data_9M86 # _entry.id 9M86 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9M86 pdb_00009m86 10.2210/pdb9m86/pdb WWPDB D_1300057388 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-08-06 ? 2 'Structure model' 1 1 2025-09-24 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9M86 _pdbx_database_status.recvd_initial_deposition_date 2025-03-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email kozo-tomita@edu.k.u-tokyo.ac.jp _pdbx_contact_author.name_first Kozo _pdbx_contact_author.name_last Tomita _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-7374-3898 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ju, J.' 1 0000-0003-3660-3375 'Tomita, K.' 2 0000-0002-7374-3898 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 16 _citation.language ? _citation.page_first 7708 _citation.page_last 7708 _citation.title 'Structures and mechanisms of U6 snRNA m 6 A modification by METTL16.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-025-63021-0 _citation.pdbx_database_id_PubMed 40841561 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ju, J.' 1 0000-0003-3660-3375 primary 'Tomita, K.' 2 0000-0002-7374-3898 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase' 15097.939 2 2.1.1.346 ? ? ? 2 polymer syn 'RNA (31-MER)' 9972.022 2 ? ? ? 'U6 small nuclear RNA' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;(MSE)RPHNELIRPSSTSLSKYFPHKVLQNWTLDPELCAQIDDILQKFLDDNKIPWSKKGSVLEISTKSITWSRKARRIS KSQTSVSSLEGQ(MSE)KCELNVIDNQLQCKWIEGYDYNVYESFCSALARALRDNKK ; ;MRPHNELIRPSSTSLSKYFPHKVLQNWTLDPELCAQIDDILQKFLDDNKIPWSKKGSVLEISTKSITWSRKARRISKSQT SVSSLEGQMKCELNVIDNQLQCKWIEGYDYNVYESFCSALARALRDNKK ; A,C ? 2 polyribonucleotide no no AGCAUGGCCCCUGCACAAGGAUGACACUGCG AGCAUGGCCCCUGCACAAGGAUGACACUGCG B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ARG n 1 3 PRO n 1 4 HIS n 1 5 ASN n 1 6 GLU n 1 7 LEU n 1 8 ILE n 1 9 ARG n 1 10 PRO n 1 11 SER n 1 12 SER n 1 13 THR n 1 14 SER n 1 15 LEU n 1 16 SER n 1 17 LYS n 1 18 TYR n 1 19 PHE n 1 20 PRO n 1 21 HIS n 1 22 LYS n 1 23 VAL n 1 24 LEU n 1 25 GLN n 1 26 ASN n 1 27 TRP n 1 28 THR n 1 29 LEU n 1 30 ASP n 1 31 PRO n 1 32 GLU n 1 33 LEU n 1 34 CYS n 1 35 ALA n 1 36 GLN n 1 37 ILE n 1 38 ASP n 1 39 ASP n 1 40 ILE n 1 41 LEU n 1 42 GLN n 1 43 LYS n 1 44 PHE n 1 45 LEU n 1 46 ASP n 1 47 ASP n 1 48 ASN n 1 49 LYS n 1 50 ILE n 1 51 PRO n 1 52 TRP n 1 53 SER n 1 54 LYS n 1 55 LYS n 1 56 GLY n 1 57 SER n 1 58 VAL n 1 59 LEU n 1 60 GLU n 1 61 ILE n 1 62 SER n 1 63 THR n 1 64 LYS n 1 65 SER n 1 66 ILE n 1 67 THR n 1 68 TRP n 1 69 SER n 1 70 ARG n 1 71 LYS n 1 72 ALA n 1 73 ARG n 1 74 ARG n 1 75 ILE n 1 76 SER n 1 77 LYS n 1 78 SER n 1 79 GLN n 1 80 THR n 1 81 SER n 1 82 VAL n 1 83 SER n 1 84 SER n 1 85 LEU n 1 86 GLU n 1 87 GLY n 1 88 GLN n 1 89 MSE n 1 90 LYS n 1 91 CYS n 1 92 GLU n 1 93 LEU n 1 94 ASN n 1 95 VAL n 1 96 ILE n 1 97 ASP n 1 98 ASN n 1 99 GLN n 1 100 LEU n 1 101 GLN n 1 102 CYS n 1 103 LYS n 1 104 TRP n 1 105 ILE n 1 106 GLU n 1 107 GLY n 1 108 TYR n 1 109 ASP n 1 110 TYR n 1 111 ASN n 1 112 VAL n 1 113 TYR n 1 114 GLU n 1 115 SER n 1 116 PHE n 1 117 CYS n 1 118 SER n 1 119 ALA n 1 120 LEU n 1 121 ALA n 1 122 ARG n 1 123 ALA n 1 124 LEU n 1 125 ARG n 1 126 ASP n 1 127 ASN n 1 128 LYS n 1 129 LYS n 2 1 A n 2 2 G n 2 3 C n 2 4 A n 2 5 U n 2 6 G n 2 7 G n 2 8 C n 2 9 C n 2 10 C n 2 11 C n 2 12 U n 2 13 G n 2 14 C n 2 15 A n 2 16 C n 2 17 A n 2 18 A n 2 19 G n 2 20 G n 2 21 A n 2 22 U n 2 23 G n 2 24 A n 2 25 C n 2 26 A n 2 27 C n 2 28 U n 2 29 G n 2 30 C n 2 31 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 129 _entity_src_gen.gene_src_common_name 'fission yeast' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SPAC27D7.08c _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Schizosaccharomyces pombe' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4896 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant Rosetta2 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 31 _pdbx_entity_src_syn.organism_scientific 'Schizosaccharomyces pombe' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 4896 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 270 ? ? ? A . n A 1 2 ARG 2 271 ? ? ? A . n A 1 3 PRO 3 272 ? ? ? A . n A 1 4 HIS 4 273 ? ? ? A . n A 1 5 ASN 5 274 ? ? ? A . n A 1 6 GLU 6 275 ? ? ? A . n A 1 7 LEU 7 276 ? ? ? A . n A 1 8 ILE 8 277 ? ? ? A . n A 1 9 ARG 9 278 ? ? ? A . n A 1 10 PRO 10 279 ? ? ? A . n A 1 11 SER 11 280 ? ? ? A . n A 1 12 SER 12 281 281 SER SER A . n A 1 13 THR 13 282 282 THR THR A . n A 1 14 SER 14 283 283 SER SER A . n A 1 15 LEU 15 284 284 LEU LEU A . n A 1 16 SER 16 285 285 SER SER A . n A 1 17 LYS 17 286 286 LYS LYS A . n A 1 18 TYR 18 287 287 TYR TYR A . n A 1 19 PHE 19 288 288 PHE PHE A . n A 1 20 PRO 20 289 289 PRO PRO A . n A 1 21 HIS 21 290 290 HIS HIS A . n A 1 22 LYS 22 291 291 LYS LYS A . n A 1 23 VAL 23 292 292 VAL VAL A . n A 1 24 LEU 24 293 293 LEU LEU A . n A 1 25 GLN 25 294 294 GLN GLN A . n A 1 26 ASN 26 295 295 ASN ASN A . n A 1 27 TRP 27 296 296 TRP TRP A . n A 1 28 THR 28 297 297 THR THR A . n A 1 29 LEU 29 298 298 LEU LEU A . n A 1 30 ASP 30 299 299 ASP ASP A . n A 1 31 PRO 31 300 300 PRO PRO A . n A 1 32 GLU 32 301 301 GLU GLU A . n A 1 33 LEU 33 302 302 LEU LEU A . n A 1 34 CYS 34 303 303 CYS CYS A . n A 1 35 ALA 35 304 304 ALA ALA A . n A 1 36 GLN 36 305 305 GLN GLN A . n A 1 37 ILE 37 306 306 ILE ILE A . n A 1 38 ASP 38 307 307 ASP ASP A . n A 1 39 ASP 39 308 308 ASP ASP A . n A 1 40 ILE 40 309 309 ILE ILE A . n A 1 41 LEU 41 310 310 LEU LEU A . n A 1 42 GLN 42 311 311 GLN GLN A . n A 1 43 LYS 43 312 312 LYS LYS A . n A 1 44 PHE 44 313 313 PHE PHE A . n A 1 45 LEU 45 314 314 LEU LEU A . n A 1 46 ASP 46 315 315 ASP ASP A . n A 1 47 ASP 47 316 316 ASP ASP A . n A 1 48 ASN 48 317 317 ASN ASN A . n A 1 49 LYS 49 318 318 LYS LYS A . n A 1 50 ILE 50 319 319 ILE ILE A . n A 1 51 PRO 51 320 320 PRO PRO A . n A 1 52 TRP 52 321 321 TRP TRP A . n A 1 53 SER 53 322 322 SER SER A . n A 1 54 LYS 54 323 323 LYS LYS A . n A 1 55 LYS 55 324 324 LYS LYS A . n A 1 56 GLY 56 325 325 GLY GLY A . n A 1 57 SER 57 326 326 SER SER A . n A 1 58 VAL 58 327 327 VAL VAL A . n A 1 59 LEU 59 328 328 LEU LEU A . n A 1 60 GLU 60 329 329 GLU GLU A . n A 1 61 ILE 61 330 330 ILE ILE A . n A 1 62 SER 62 331 331 SER SER A . n A 1 63 THR 63 332 332 THR THR A . n A 1 64 LYS 64 333 333 LYS LYS A . n A 1 65 SER 65 334 334 SER SER A . n A 1 66 ILE 66 335 335 ILE ILE A . n A 1 67 THR 67 336 336 THR THR A . n A 1 68 TRP 68 337 337 TRP TRP A . n A 1 69 SER 69 338 338 SER SER A . n A 1 70 ARG 70 339 339 ARG ARG A . n A 1 71 LYS 71 340 340 LYS LYS A . n A 1 72 ALA 72 341 341 ALA ALA A . n A 1 73 ARG 73 342 342 ARG ARG A . n A 1 74 ARG 74 343 343 ARG ARG A . n A 1 75 ILE 75 344 344 ILE ILE A . n A 1 76 SER 76 345 345 SER SER A . n A 1 77 LYS 77 346 346 LYS LYS A . n A 1 78 SER 78 347 347 SER SER A . n A 1 79 GLN 79 348 348 GLN GLN A . n A 1 80 THR 80 349 349 THR THR A . n A 1 81 SER 81 350 350 SER SER A . n A 1 82 VAL 82 351 351 VAL VAL A . n A 1 83 SER 83 352 352 SER SER A . n A 1 84 SER 84 353 353 SER SER A . n A 1 85 LEU 85 354 354 LEU LEU A . n A 1 86 GLU 86 355 355 GLU GLU A . n A 1 87 GLY 87 356 356 GLY GLY A . n A 1 88 GLN 88 357 357 GLN GLN A . n A 1 89 MSE 89 358 358 MSE MSE A . n A 1 90 LYS 90 359 359 LYS LYS A . n A 1 91 CYS 91 360 360 CYS CYS A . n A 1 92 GLU 92 361 361 GLU GLU A . n A 1 93 LEU 93 362 362 LEU LEU A . n A 1 94 ASN 94 363 363 ASN ASN A . n A 1 95 VAL 95 364 364 VAL VAL A . n A 1 96 ILE 96 365 365 ILE ILE A . n A 1 97 ASP 97 366 366 ASP ASP A . n A 1 98 ASN 98 367 367 ASN ASN A . n A 1 99 GLN 99 368 368 GLN GLN A . n A 1 100 LEU 100 369 369 LEU LEU A . n A 1 101 GLN 101 370 370 GLN GLN A . n A 1 102 CYS 102 371 371 CYS CYS A . n A 1 103 LYS 103 372 372 LYS LYS A . n A 1 104 TRP 104 373 373 TRP TRP A . n A 1 105 ILE 105 374 374 ILE ILE A . n A 1 106 GLU 106 375 375 GLU GLU A . n A 1 107 GLY 107 376 376 GLY GLY A . n A 1 108 TYR 108 377 377 TYR TYR A . n A 1 109 ASP 109 378 378 ASP ASP A . n A 1 110 TYR 110 379 379 TYR TYR A . n A 1 111 ASN 111 380 380 ASN ASN A . n A 1 112 VAL 112 381 381 VAL VAL A . n A 1 113 TYR 113 382 382 TYR TYR A . n A 1 114 GLU 114 383 383 GLU GLU A . n A 1 115 SER 115 384 384 SER SER A . n A 1 116 PHE 116 385 385 PHE PHE A . n A 1 117 CYS 117 386 386 CYS CYS A . n A 1 118 SER 118 387 387 SER SER A . n A 1 119 ALA 119 388 388 ALA ALA A . n A 1 120 LEU 120 389 389 LEU LEU A . n A 1 121 ALA 121 390 390 ALA ALA A . n A 1 122 ARG 122 391 391 ARG ARG A . n A 1 123 ALA 123 392 392 ALA ALA A . n A 1 124 LEU 124 393 393 LEU LEU A . n A 1 125 ARG 125 394 394 ARG ARG A . n A 1 126 ASP 126 395 395 ASP ASP A . n A 1 127 ASN 127 396 396 ASN ASN A . n A 1 128 LYS 128 397 397 LYS LYS A . n A 1 129 LYS 129 398 398 LYS LYS A . n B 2 1 A 1 47 47 A A B . n B 2 2 G 2 48 48 G G B . n B 2 3 C 3 49 49 C C B . n B 2 4 A 4 50 50 A A B . n B 2 5 U 5 51 51 U U B . n B 2 6 G 6 52 52 G G B . n B 2 7 G 7 53 53 G G B . n B 2 8 C 8 54 54 C C B . n B 2 9 C 9 55 55 C C B . n B 2 10 C 10 56 56 C C B . n B 2 11 C 11 57 57 C C B . n B 2 12 U 12 58 58 U U B . n B 2 13 G 13 59 59 G G B . n B 2 14 C 14 60 60 C C B . n B 2 15 A 15 61 61 A A B . n B 2 16 C 16 62 62 C C B . n B 2 17 A 17 63 63 A A B . n B 2 18 A 18 64 64 A A B . n B 2 19 G 19 65 65 G G B . n B 2 20 G 20 66 66 G G B . n B 2 21 A 21 67 67 A A B . n B 2 22 U 22 68 68 U U B . n B 2 23 G 23 69 69 G G B . n B 2 24 A 24 70 70 A A B . n B 2 25 C 25 71 71 C C B . n B 2 26 A 26 72 72 A A B . n B 2 27 C 27 73 73 C C B . n B 2 28 U 28 74 74 U U B . n B 2 29 G 29 75 75 G G B . n B 2 30 C 30 76 76 C C B . n B 2 31 G 31 77 77 G G B . n C 1 1 MSE 1 270 ? ? ? C . n C 1 2 ARG 2 271 ? ? ? C . n C 1 3 PRO 3 272 ? ? ? C . n C 1 4 HIS 4 273 ? ? ? C . n C 1 5 ASN 5 274 ? ? ? C . n C 1 6 GLU 6 275 ? ? ? C . n C 1 7 LEU 7 276 ? ? ? C . n C 1 8 ILE 8 277 ? ? ? C . n C 1 9 ARG 9 278 ? ? ? C . n C 1 10 PRO 10 279 ? ? ? C . n C 1 11 SER 11 280 ? ? ? C . n C 1 12 SER 12 281 281 SER SER C . n C 1 13 THR 13 282 282 THR THR C . n C 1 14 SER 14 283 283 SER SER C . n C 1 15 LEU 15 284 284 LEU LEU C . n C 1 16 SER 16 285 285 SER SER C . n C 1 17 LYS 17 286 286 LYS LYS C . n C 1 18 TYR 18 287 287 TYR TYR C . n C 1 19 PHE 19 288 288 PHE PHE C . n C 1 20 PRO 20 289 289 PRO PRO C . n C 1 21 HIS 21 290 290 HIS HIS C . n C 1 22 LYS 22 291 291 LYS LYS C . n C 1 23 VAL 23 292 292 VAL VAL C . n C 1 24 LEU 24 293 293 LEU LEU C . n C 1 25 GLN 25 294 294 GLN GLN C . n C 1 26 ASN 26 295 295 ASN ASN C . n C 1 27 TRP 27 296 296 TRP TRP C . n C 1 28 THR 28 297 297 THR THR C . n C 1 29 LEU 29 298 298 LEU LEU C . n C 1 30 ASP 30 299 299 ASP ASP C . n C 1 31 PRO 31 300 300 PRO PRO C . n C 1 32 GLU 32 301 301 GLU GLU C . n C 1 33 LEU 33 302 302 LEU LEU C . n C 1 34 CYS 34 303 303 CYS CYS C . n C 1 35 ALA 35 304 304 ALA ALA C . n C 1 36 GLN 36 305 305 GLN GLN C . n C 1 37 ILE 37 306 306 ILE ILE C . n C 1 38 ASP 38 307 307 ASP ASP C . n C 1 39 ASP 39 308 308 ASP ASP C . n C 1 40 ILE 40 309 309 ILE ILE C . n C 1 41 LEU 41 310 310 LEU LEU C . n C 1 42 GLN 42 311 311 GLN GLN C . n C 1 43 LYS 43 312 312 LYS LYS C . n C 1 44 PHE 44 313 313 PHE PHE C . n C 1 45 LEU 45 314 314 LEU LEU C . n C 1 46 ASP 46 315 315 ASP ASP C . n C 1 47 ASP 47 316 316 ASP ASP C . n C 1 48 ASN 48 317 317 ASN ASN C . n C 1 49 LYS 49 318 318 LYS LYS C . n C 1 50 ILE 50 319 319 ILE ILE C . n C 1 51 PRO 51 320 320 PRO PRO C . n C 1 52 TRP 52 321 321 TRP TRP C . n C 1 53 SER 53 322 322 SER SER C . n C 1 54 LYS 54 323 323 LYS LYS C . n C 1 55 LYS 55 324 324 LYS LYS C . n C 1 56 GLY 56 325 325 GLY GLY C . n C 1 57 SER 57 326 326 SER SER C . n C 1 58 VAL 58 327 327 VAL VAL C . n C 1 59 LEU 59 328 328 LEU LEU C . n C 1 60 GLU 60 329 329 GLU GLU C . n C 1 61 ILE 61 330 330 ILE ILE C . n C 1 62 SER 62 331 331 SER SER C . n C 1 63 THR 63 332 332 THR THR C . n C 1 64 LYS 64 333 333 LYS LYS C . n C 1 65 SER 65 334 334 SER SER C . n C 1 66 ILE 66 335 335 ILE ILE C . n C 1 67 THR 67 336 336 THR THR C . n C 1 68 TRP 68 337 337 TRP TRP C . n C 1 69 SER 69 338 338 SER SER C . n C 1 70 ARG 70 339 339 ARG ARG C . n C 1 71 LYS 71 340 340 LYS LYS C . n C 1 72 ALA 72 341 341 ALA ALA C . n C 1 73 ARG 73 342 342 ARG ARG C . n C 1 74 ARG 74 343 343 ARG ARG C . n C 1 75 ILE 75 344 344 ILE ILE C . n C 1 76 SER 76 345 345 SER SER C . n C 1 77 LYS 77 346 346 LYS LYS C . n C 1 78 SER 78 347 347 SER SER C . n C 1 79 GLN 79 348 348 GLN GLN C . n C 1 80 THR 80 349 349 THR THR C . n C 1 81 SER 81 350 350 SER SER C . n C 1 82 VAL 82 351 351 VAL VAL C . n C 1 83 SER 83 352 352 SER SER C . n C 1 84 SER 84 353 353 SER SER C . n C 1 85 LEU 85 354 354 LEU LEU C . n C 1 86 GLU 86 355 355 GLU GLU C . n C 1 87 GLY 87 356 356 GLY GLY C . n C 1 88 GLN 88 357 357 GLN GLN C . n C 1 89 MSE 89 358 358 MSE MSE C . n C 1 90 LYS 90 359 359 LYS LYS C . n C 1 91 CYS 91 360 360 CYS CYS C . n C 1 92 GLU 92 361 361 GLU GLU C . n C 1 93 LEU 93 362 362 LEU LEU C . n C 1 94 ASN 94 363 363 ASN ASN C . n C 1 95 VAL 95 364 364 VAL VAL C . n C 1 96 ILE 96 365 365 ILE ILE C . n C 1 97 ASP 97 366 366 ASP ASP C . n C 1 98 ASN 98 367 367 ASN ASN C . n C 1 99 GLN 99 368 368 GLN GLN C . n C 1 100 LEU 100 369 369 LEU LEU C . n C 1 101 GLN 101 370 370 GLN GLN C . n C 1 102 CYS 102 371 371 CYS CYS C . n C 1 103 LYS 103 372 372 LYS LYS C . n C 1 104 TRP 104 373 373 TRP TRP C . n C 1 105 ILE 105 374 374 ILE ILE C . n C 1 106 GLU 106 375 375 GLU GLU C . n C 1 107 GLY 107 376 376 GLY GLY C . n C 1 108 TYR 108 377 377 TYR TYR C . n C 1 109 ASP 109 378 378 ASP ASP C . n C 1 110 TYR 110 379 379 TYR TYR C . n C 1 111 ASN 111 380 380 ASN ASN C . n C 1 112 VAL 112 381 381 VAL VAL C . n C 1 113 TYR 113 382 382 TYR TYR C . n C 1 114 GLU 114 383 383 GLU GLU C . n C 1 115 SER 115 384 384 SER SER C . n C 1 116 PHE 116 385 385 PHE PHE C . n C 1 117 CYS 117 386 386 CYS CYS C . n C 1 118 SER 118 387 387 SER SER C . n C 1 119 ALA 119 388 388 ALA ALA C . n C 1 120 LEU 120 389 389 LEU LEU C . n C 1 121 ALA 121 390 390 ALA ALA C . n C 1 122 ARG 122 391 391 ARG ARG C . n C 1 123 ALA 123 392 392 ALA ALA C . n C 1 124 LEU 124 393 393 LEU LEU C . n C 1 125 ARG 125 394 394 ARG ARG C . n C 1 126 ASP 126 395 395 ASP ASP C . n C 1 127 ASN 127 396 396 ASN ASN C . n C 1 128 LYS 128 397 397 LYS LYS C . n C 1 129 LYS 129 398 398 LYS LYS C . n D 2 1 A 1 47 47 A A D . n D 2 2 G 2 48 48 G G D . n D 2 3 C 3 49 49 C C D . n D 2 4 A 4 50 50 A A D . n D 2 5 U 5 51 51 U U D . n D 2 6 G 6 52 52 G G D . n D 2 7 G 7 53 53 G G D . n D 2 8 C 8 54 54 C C D . n D 2 9 C 9 55 55 C C D . n D 2 10 C 10 56 56 C C D . n D 2 11 C 11 57 57 C C D . n D 2 12 U 12 58 58 U U D . n D 2 13 G 13 59 59 G G D . n D 2 14 C 14 60 60 C C D . n D 2 15 A 15 61 61 A A D . n D 2 16 C 16 62 62 C C D . n D 2 17 A 17 63 63 A A D . n D 2 18 A 18 64 64 A A D . n D 2 19 G 19 65 65 G G D . n D 2 20 G 20 66 66 G G D . n D 2 21 A 21 67 67 A A D . n D 2 22 U 22 68 68 U U D . n D 2 23 G 23 69 69 G G D . n D 2 24 A 24 70 70 A A D . n D 2 25 C 25 71 71 C C D . n D 2 26 A 26 72 72 A A D . n D 2 27 C 27 73 73 C C D . n D 2 28 U 28 74 74 U U D . n D 2 29 G 29 75 75 G G D . n D 2 30 C 30 76 76 C C D . n D 2 31 G 31 77 77 G G D . n # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.13_2998)' 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 4.2 5 # _cell.angle_alpha 87.53 _cell.angle_alpha_esd ? _cell.angle_beta 88.35 _cell.angle_beta_esd ? _cell.angle_gamma 62.87 _cell.angle_gamma_esd ? _cell.entry_id 9M86 _cell.details ? _cell.formula_units_Z ? _cell.length_a 44.135 _cell.length_a_esd ? _cell.length_b 47.136 _cell.length_b_esd ? _cell.length_c 61.831 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9M86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9M86 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'sodium acetate, sodium cacodylate pH 7.0, Tris-HCl pH 8.5, PEG 8000' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 4M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2024-03-11 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.978 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.978 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9M86 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.79 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10820 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.94 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.179 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.168 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 2.79 2.87 ? ? ? ? ? ? 772 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.756 ? ? 1 1 0.819 ? ? ? ? 0.712 ? ? ? ? ? ? ? ? ? 2.87 2.94 ? ? ? ? ? ? 809 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.691 ? ? 2 1 0.899 ? ? ? ? 0.653 ? ? ? ? ? ? ? ? ? 2.94 3.03 ? ? ? ? ? ? 724 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.531 ? ? 3 1 0.965 ? ? ? ? 0.501 ? ? ? ? ? ? ? ? ? 3.03 3.12 ? ? ? ? ? ? 759 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.35 ? ? 4 1 0.991 ? ? ? ? 0.33 ? ? ? ? ? ? ? ? ? 3.12 3.23 ? ? ? ? ? ? 683 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.316 ? ? 5 1 0.991 ? ? ? ? 0.297 ? ? ? ? ? ? ? ? ? 3.23 3.34 ? ? ? ? ? ? 704 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.301 ? ? 6 1 0.983 ? ? ? ? 0.282 ? ? ? ? ? ? ? ? ? 3.34 3.46 ? ? ? ? ? ? 666 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.278 ? ? 7 1 0.984 ? ? ? ? 0.26 ? ? ? ? ? ? ? ? ? 3.46 3.61 ? ? ? ? ? ? 656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.255 ? ? 8 1 0.989 ? ? ? ? 0.239 ? ? ? ? ? ? ? ? ? 3.61 3.77 ? ? ? ? ? ? 597 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.202 ? ? 9 1 0.995 ? ? ? ? 0.19 ? ? ? ? ? ? ? ? ? 3.77 3.95 ? ? ? ? ? ? 613 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.201 ? ? 10 1 0.992 ? ? ? ? 0.19 ? ? ? ? ? ? ? ? ? 3.95 4.16 ? ? ? ? ? ? 533 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.183 ? ? 11 1 0.994 ? ? ? ? 0.173 ? ? ? ? ? ? ? ? ? 4.16 4.42 ? ? ? ? ? ? 558 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.172 ? ? 12 1 0.994 ? ? ? ? 0.162 ? ? ? ? ? ? ? ? ? 4.42 4.72 ? ? ? ? ? ? 500 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.137 ? ? 13 1 0.993 ? ? ? ? 0.129 ? ? ? ? ? ? ? ? ? 4.72 5.1 ? ? ? ? ? ? 451 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.12 ? ? 14 1 0.993 ? ? ? ? 0.112 ? ? ? ? ? ? ? ? ? 5.10 5.59 ? ? ? ? ? ? 442 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.118 ? ? 15 1 0.995 ? ? ? ? 0.111 ? ? ? ? ? ? ? ? ? 5.59 6.25 ? ? ? ? ? ? 378 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.119 ? ? 16 1 0.995 ? ? ? ? 0.112 ? ? ? ? ? ? ? ? ? 6.25 7.21 ? ? ? ? ? ? 342 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.109 ? ? 17 1 0.995 ? ? ? ? 0.102 ? ? ? ? ? ? ? ? ? 7.21 8.83 ? ? ? ? ? ? 293 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.084 ? ? 18 1 0.996 ? ? ? ? 0.079 ? ? ? ? ? ? ? ? ? 8.83 12.49 ? ? ? ? ? ? 219 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.065 ? ? 19 1 0.998 ? ? ? ? 0.06 ? ? ? ? ? ? ? ? ? 12.49 50 ? ? ? ? ? ? 121 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.067 ? ? 20 1 0.994 ? ? ? ? 0.062 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9M86 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.795 _refine.ls_d_res_low 33.490 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10788 _refine.ls_number_reflns_R_free 542 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.48 _refine.ls_percent_reflns_R_free 5.02 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2086 _refine.ls_R_factor_R_free 0.2600 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2059 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.05 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.32 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.41 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1918 _refine_hist.pdbx_number_atoms_nucleic_acid 1320 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3238 _refine_hist.d_res_high 2.795 _refine_hist.d_res_low 33.490 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 3430 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.824 ? 4932 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 18.368 ? 1478 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.046 ? 598 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 392 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.795 3.0757 . . 134 2514 98.00 . . . . 0.2659 . . . . . . . . . . . . . . . 0.3264 'X-RAY DIFFRACTION' 3.0757 3.5203 . . 136 2567 98.00 . . . . 0.2271 . . . . . . . . . . . . . . . 0.2756 'X-RAY DIFFRACTION' 3.5203 4.4336 . . 136 2589 99.00 . . . . 0.1973 . . . . . . . . . . . . . . . 0.2500 'X-RAY DIFFRACTION' 4.4336 33.49 . . 136 2576 99.00 . . . . 0.1844 . . . . . . . . . . . . . . . 0.2394 # _struct.entry_id 9M86 _struct.title 'Crystal structure of SpMETTL16 kinase associated 1 domain in complex with U6 snRNA internal stem loop' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9M86 _struct_keywords.text 'm6A methyltransferase, U6 snRNA, protein-RNA complex, splicing, TRANSFERASE, TRANSFERASE-RNA complex' _struct_keywords.pdbx_keywords TRANSFERASE/RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP MTL16_SCHPO O42662 ? 1 ;MRPHNELIRPSSTSLSKYFPHKVLQNWTLDPELCAQIDDILQKFLDDNKIPWSKKGSVLEISTKSITWSRKARRISKSQT SVSSLEGQMKCELNVIDNQLQCKWIEGYDYNVYESFCSALARALRDNKK ; 257 2 PDB 9M86 9M86 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9M86 A 1 ? 129 ? O42662 257 ? 385 ? 270 398 2 2 9M86 B 1 ? 31 ? 9M86 47 ? 77 ? 47 77 3 1 9M86 C 1 ? 129 ? O42662 257 ? 385 ? 270 398 4 2 9M86 D 1 ? 31 ? 9M86 47 ? 77 ? 47 77 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1990 ? 1 MORE -15 ? 1 'SSA (A^2)' 12180 ? 2 'ABSA (A^2)' 1860 ? 2 MORE -14 ? 2 'SSA (A^2)' 12340 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1 C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 30 ? ASN A 48 ? ASP A 299 ASN A 317 1 ? 19 HELX_P HELX_P2 AA2 SER A 69 ? SER A 78 ? SER A 338 SER A 347 1 ? 10 HELX_P HELX_P3 AA3 ASP A 109 ? ASN A 127 ? ASP A 378 ASN A 396 1 ? 19 HELX_P HELX_P4 AA4 ASP C 30 ? ASN C 48 ? ASP C 299 ASN C 317 1 ? 19 HELX_P HELX_P5 AA5 SER C 69 ? LYS C 77 ? SER C 338 LYS C 346 1 ? 9 HELX_P HELX_P6 AA6 ASP C 109 ? LYS C 129 ? ASP C 378 LYS C 398 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLN 88 C ? ? ? 1_555 A MSE 89 N ? ? A GLN 357 A MSE 358 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A MSE 89 C ? ? ? 1_555 A LYS 90 N ? ? A MSE 358 A LYS 359 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? C GLN 88 C ? ? ? 1_555 C MSE 89 N ? ? C GLN 357 C MSE 358 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? C MSE 89 C ? ? ? 1_555 C LYS 90 N ? ? C MSE 358 C LYS 359 1_555 ? ? ? ? ? ? ? 1.332 ? ? hydrog1 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 30 N3 ? ? B G 48 B C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 30 O2 ? ? B G 48 B C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 30 N4 ? ? B G 48 B C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 2 N1 ? ? ? 1_555 B G 31 O6 ? ? B G 48 B G 77 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog5 hydrog ? ? B G 2 O6 ? ? ? 1_555 B G 31 N1 ? ? B G 48 B G 77 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog6 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 29 N1 ? ? B C 49 B G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 29 O6 ? ? B C 49 B G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 29 N2 ? ? B C 49 B G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 28 N3 ? ? B A 50 B U 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 28 O4 ? ? B A 50 B U 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B U 5 N3 ? ? ? 1_555 B A 26 N1 ? ? B U 51 B A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B U 5 O4 ? ? ? 1_555 B A 26 N6 ? ? B U 51 B A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B U 5 O2 ? ? ? 1_555 B C 27 N4 ? ? B U 51 B C 73 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog14 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 25 N3 ? ? B G 52 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 25 O2 ? ? B G 52 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 25 N4 ? ? B G 52 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B G 7 N1 ? ? ? 1_555 B A 24 N1 ? ? B G 53 B A 70 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog18 hydrog ? ? B C 8 N3 ? ? ? 1_555 B G 23 N1 ? ? B C 54 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B C 8 N4 ? ? ? 1_555 B G 23 O6 ? ? B C 54 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B C 8 O2 ? ? ? 1_555 B G 23 N2 ? ? B C 54 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B C 9 N4 ? ? ? 1_555 B A 21 N1 ? ? B C 55 B A 67 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog22 hydrog ? ? B C 10 O2 ? ? ? 1_555 B G 20 N2 ? ? B C 56 B G 66 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog23 hydrog ? ? B C 11 N3 ? ? ? 1_555 B G 19 N1 ? ? B C 57 B G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B C 11 N4 ? ? ? 1_555 B G 19 O6 ? ? B C 57 B G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B C 11 O2 ? ? ? 1_555 B G 19 N2 ? ? B C 57 B G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B U 12 N3 ? ? ? 1_555 B A 18 N1 ? ? B U 58 B A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B U 12 O4 ? ? ? 1_555 B A 18 N6 ? ? B U 58 B A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B G 13 N2 ? ? ? 1_555 B A 17 N7 ? ? B G 59 B A 63 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog29 hydrog ? ? B G 13 N3 ? ? ? 1_555 B A 17 N6 ? ? B G 59 B A 63 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog30 hydrog ? ? D G 2 N1 ? ? ? 1_555 D C 30 N3 ? ? D G 48 D C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? D G 2 N2 ? ? ? 1_555 D C 30 O2 ? ? D G 48 D C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? D G 2 O6 ? ? ? 1_555 D C 30 N4 ? ? D G 48 D C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? D C 3 N3 ? ? ? 1_555 D G 29 N1 ? ? D C 49 D G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? D C 3 N4 ? ? ? 1_555 D G 29 O6 ? ? D C 49 D G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? D C 3 O2 ? ? ? 1_555 D G 29 N2 ? ? D C 49 D G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? D A 4 N1 ? ? ? 1_555 D U 28 N3 ? ? D A 50 D U 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? D A 4 N6 ? ? ? 1_555 D U 28 O4 ? ? D A 50 D U 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? D U 5 N3 ? ? ? 1_555 D A 26 N1 ? ? D U 51 D A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? D U 5 O4 ? ? ? 1_555 D A 26 N6 ? ? D U 51 D A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? D G 6 N1 ? ? ? 1_555 D C 25 N3 ? ? D G 52 D C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? D G 6 N2 ? ? ? 1_555 D C 25 O2 ? ? D G 52 D C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? D G 6 O6 ? ? ? 1_555 D C 25 N4 ? ? D G 52 D C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? D G 7 N1 ? ? ? 1_555 D A 24 N1 ? ? D G 53 D A 70 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog44 hydrog ? ? D G 7 O6 ? ? ? 1_555 D A 24 N6 ? ? D G 53 D A 70 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog45 hydrog ? ? D C 8 N3 ? ? ? 1_555 D G 23 N1 ? ? D C 54 D G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? D C 8 N4 ? ? ? 1_555 D G 23 O6 ? ? D C 54 D G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? D C 8 O2 ? ? ? 1_555 D G 23 N2 ? ? D C 54 D G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? D C 9 N4 ? ? ? 1_555 D A 21 N1 ? ? D C 55 D A 67 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog49 hydrog ? ? D C 10 N3 ? ? ? 1_555 D G 20 N1 ? ? D C 56 D G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? D C 10 N4 ? ? ? 1_555 D G 20 O6 ? ? D C 56 D G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? D C 10 O2 ? ? ? 1_555 D G 20 N2 ? ? D C 56 D G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? D C 11 N3 ? ? ? 1_555 D G 19 N1 ? ? D C 57 D G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? D C 11 N4 ? ? ? 1_555 D G 19 O6 ? ? D C 57 D G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? D C 11 O2 ? ? ? 1_555 D G 19 N2 ? ? D C 57 D G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? D U 12 N3 ? ? ? 1_555 D A 18 N1 ? ? D U 58 D A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? D U 12 O4 ? ? ? 1_555 D A 18 N6 ? ? D U 58 D A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? D G 13 N2 ? ? ? 1_555 D A 17 N7 ? ? D G 59 D A 63 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog58 hydrog ? ? D G 13 N3 ? ? ? 1_555 D A 17 N6 ? ? D G 59 D A 63 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 89 ? . . . . MSE A 358 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE C 89 ? . . . . MSE C 358 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 24 ? THR A 28 ? LEU A 293 THR A 297 AA1 2 GLN A 99 ? GLU A 106 ? GLN A 368 GLU A 375 AA1 3 GLU A 86 ? ILE A 96 ? GLU A 355 ILE A 365 AA1 4 LEU A 59 ? SER A 65 ? LEU A 328 SER A 334 AA1 5 TRP A 52 ? LYS A 54 ? TRP A 321 LYS A 323 AA2 1 LEU C 24 ? THR C 28 ? LEU C 293 THR C 297 AA2 2 GLN C 99 ? GLY C 107 ? GLN C 368 GLY C 376 AA2 3 MSE C 89 ? ILE C 96 ? MSE C 358 ILE C 365 AA2 4 LEU C 59 ? THR C 63 ? LEU C 328 THR C 332 AA2 5 TRP C 52 ? LYS C 54 ? TRP C 321 LYS C 323 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLN A 25 ? N GLN A 294 O CYS A 102 ? O CYS A 371 AA1 2 3 O LYS A 103 ? O LYS A 372 N GLU A 92 ? N GLU A 361 AA1 3 4 O MSE A 89 ? O MSE A 358 N THR A 63 ? N THR A 332 AA1 4 5 O GLU A 60 ? O GLU A 329 N SER A 53 ? N SER A 322 AA2 1 2 N GLN C 25 ? N GLN C 294 O CYS C 102 ? O CYS C 371 AA2 2 3 O GLN C 101 ? O GLN C 370 N ASN C 94 ? N ASN C 363 AA2 3 4 O CYS C 91 ? O CYS C 360 N ILE C 61 ? N ILE C 330 AA2 4 5 O GLU C 60 ? O GLU C 329 N SER C 53 ? N SER C 322 # _pdbx_entry_details.entry_id 9M86 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 352 ? ? -99.05 34.93 2 1 GLU A 355 ? ? -77.34 -168.12 3 1 SER C 283 ? ? -100.07 58.13 4 1 SER C 334 ? ? -170.41 146.75 5 1 GLU C 355 ? ? -66.17 -179.04 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 89 A MSE 358 ? MET 'modified residue' 2 C MSE 89 C MSE 358 ? MET 'modified residue' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 270 ? A MSE 1 2 1 Y 1 A ARG 271 ? A ARG 2 3 1 Y 1 A PRO 272 ? A PRO 3 4 1 Y 1 A HIS 273 ? A HIS 4 5 1 Y 1 A ASN 274 ? A ASN 5 6 1 Y 1 A GLU 275 ? A GLU 6 7 1 Y 1 A LEU 276 ? A LEU 7 8 1 Y 1 A ILE 277 ? A ILE 8 9 1 Y 1 A ARG 278 ? A ARG 9 10 1 Y 1 A PRO 279 ? A PRO 10 11 1 Y 1 A SER 280 ? A SER 11 12 1 Y 1 C MSE 270 ? C MSE 1 13 1 Y 1 C ARG 271 ? C ARG 2 14 1 Y 1 C PRO 272 ? C PRO 3 15 1 Y 1 C HIS 273 ? C HIS 4 16 1 Y 1 C ASN 274 ? C ASN 5 17 1 Y 1 C GLU 275 ? C GLU 6 18 1 Y 1 C LEU 276 ? C LEU 7 19 1 Y 1 C ILE 277 ? C ILE 8 20 1 Y 1 C ARG 278 ? C ARG 9 21 1 Y 1 C PRO 279 ? C PRO 10 22 1 Y 1 C SER 280 ? C SER 11 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 ILE N N N N 268 ILE CA C N S 269 ILE C C N N 270 ILE O O N N 271 ILE CB C N S 272 ILE CG1 C N N 273 ILE CG2 C N N 274 ILE CD1 C N N 275 ILE OXT O N N 276 ILE H H N N 277 ILE H2 H N N 278 ILE HA H N N 279 ILE HB H N N 280 ILE HG12 H N N 281 ILE HG13 H N N 282 ILE HG21 H N N 283 ILE HG22 H N N 284 ILE HG23 H N N 285 ILE HD11 H N N 286 ILE HD12 H N N 287 ILE HD13 H N N 288 ILE HXT H N N 289 LEU N N N N 290 LEU CA C N S 291 LEU C C N N 292 LEU O O N N 293 LEU CB C N N 294 LEU CG C N N 295 LEU CD1 C N N 296 LEU CD2 C N N 297 LEU OXT O N N 298 LEU H H N N 299 LEU H2 H N N 300 LEU HA H N N 301 LEU HB2 H N N 302 LEU HB3 H N N 303 LEU HG H N N 304 LEU HD11 H N N 305 LEU HD12 H N N 306 LEU HD13 H N N 307 LEU HD21 H N N 308 LEU HD22 H N N 309 LEU HD23 H N N 310 LEU HXT H N N 311 LYS N N N N 312 LYS CA C N S 313 LYS C C N N 314 LYS O O N N 315 LYS CB C N N 316 LYS CG C N N 317 LYS CD C N N 318 LYS CE C N N 319 LYS NZ N N N 320 LYS OXT O N N 321 LYS H H N N 322 LYS H2 H N N 323 LYS HA H N N 324 LYS HB2 H N N 325 LYS HB3 H N N 326 LYS HG2 H N N 327 LYS HG3 H N N 328 LYS HD2 H N N 329 LYS HD3 H N N 330 LYS HE2 H N N 331 LYS HE3 H N N 332 LYS HZ1 H N N 333 LYS HZ2 H N N 334 LYS HZ3 H N N 335 LYS HXT H N N 336 MSE N N N N 337 MSE CA C N S 338 MSE C C N N 339 MSE O O N N 340 MSE OXT O N N 341 MSE CB C N N 342 MSE CG C N N 343 MSE SE SE N N 344 MSE CE C N N 345 MSE H H N N 346 MSE H2 H N N 347 MSE HA H N N 348 MSE HXT H N N 349 MSE HB2 H N N 350 MSE HB3 H N N 351 MSE HG2 H N N 352 MSE HG3 H N N 353 MSE HE1 H N N 354 MSE HE2 H N N 355 MSE HE3 H N N 356 PHE N N N N 357 PHE CA C N S 358 PHE C C N N 359 PHE O O N N 360 PHE CB C N N 361 PHE CG C Y N 362 PHE CD1 C Y N 363 PHE CD2 C Y N 364 PHE CE1 C Y N 365 PHE CE2 C Y N 366 PHE CZ C Y N 367 PHE OXT O N N 368 PHE H H N N 369 PHE H2 H N N 370 PHE HA H N N 371 PHE HB2 H N N 372 PHE HB3 H N N 373 PHE HD1 H N N 374 PHE HD2 H N N 375 PHE HE1 H N N 376 PHE HE2 H N N 377 PHE HZ H N N 378 PHE HXT H N N 379 PRO N N N N 380 PRO CA C N S 381 PRO C C N N 382 PRO O O N N 383 PRO CB C N N 384 PRO CG C N N 385 PRO CD C N N 386 PRO OXT O N N 387 PRO H H N N 388 PRO HA H N N 389 PRO HB2 H N N 390 PRO HB3 H N N 391 PRO HG2 H N N 392 PRO HG3 H N N 393 PRO HD2 H N N 394 PRO HD3 H N N 395 PRO HXT H N N 396 SER N N N N 397 SER CA C N S 398 SER C C N N 399 SER O O N N 400 SER CB C N N 401 SER OG O N N 402 SER OXT O N N 403 SER H H N N 404 SER H2 H N N 405 SER HA H N N 406 SER HB2 H N N 407 SER HB3 H N N 408 SER HG H N N 409 SER HXT H N N 410 THR N N N N 411 THR CA C N S 412 THR C C N N 413 THR O O N N 414 THR CB C N R 415 THR OG1 O N N 416 THR CG2 C N N 417 THR OXT O N N 418 THR H H N N 419 THR H2 H N N 420 THR HA H N N 421 THR HB H N N 422 THR HG1 H N N 423 THR HG21 H N N 424 THR HG22 H N N 425 THR HG23 H N N 426 THR HXT H N N 427 TRP N N N N 428 TRP CA C N S 429 TRP C C N N 430 TRP O O N N 431 TRP CB C N N 432 TRP CG C Y N 433 TRP CD1 C Y N 434 TRP CD2 C Y N 435 TRP NE1 N Y N 436 TRP CE2 C Y N 437 TRP CE3 C Y N 438 TRP CZ2 C Y N 439 TRP CZ3 C Y N 440 TRP CH2 C Y N 441 TRP OXT O N N 442 TRP H H N N 443 TRP H2 H N N 444 TRP HA H N N 445 TRP HB2 H N N 446 TRP HB3 H N N 447 TRP HD1 H N N 448 TRP HE1 H N N 449 TRP HE3 H N N 450 TRP HZ2 H N N 451 TRP HZ3 H N N 452 TRP HH2 H N N 453 TRP HXT H N N 454 TYR N N N N 455 TYR CA C N S 456 TYR C C N N 457 TYR O O N N 458 TYR CB C N N 459 TYR CG C Y N 460 TYR CD1 C Y N 461 TYR CD2 C Y N 462 TYR CE1 C Y N 463 TYR CE2 C Y N 464 TYR CZ C Y N 465 TYR OH O N N 466 TYR OXT O N N 467 TYR H H N N 468 TYR H2 H N N 469 TYR HA H N N 470 TYR HB2 H N N 471 TYR HB3 H N N 472 TYR HD1 H N N 473 TYR HD2 H N N 474 TYR HE1 H N N 475 TYR HE2 H N N 476 TYR HH H N N 477 TYR HXT H N N 478 U OP3 O N N 479 U P P N N 480 U OP1 O N N 481 U OP2 O N N 482 U "O5'" O N N 483 U "C5'" C N N 484 U "C4'" C N R 485 U "O4'" O N N 486 U "C3'" C N S 487 U "O3'" O N N 488 U "C2'" C N R 489 U "O2'" O N N 490 U "C1'" C N R 491 U N1 N N N 492 U C2 C N N 493 U O2 O N N 494 U N3 N N N 495 U C4 C N N 496 U O4 O N N 497 U C5 C N N 498 U C6 C N N 499 U HOP3 H N N 500 U HOP2 H N N 501 U "H5'" H N N 502 U "H5''" H N N 503 U "H4'" H N N 504 U "H3'" H N N 505 U "HO3'" H N N 506 U "H2'" H N N 507 U "HO2'" H N N 508 U "H1'" H N N 509 U H3 H N N 510 U H5 H N N 511 U H6 H N N 512 VAL N N N N 513 VAL CA C N S 514 VAL C C N N 515 VAL O O N N 516 VAL CB C N N 517 VAL CG1 C N N 518 VAL CG2 C N N 519 VAL OXT O N N 520 VAL H H N N 521 VAL H2 H N N 522 VAL HA H N N 523 VAL HB H N N 524 VAL HG11 H N N 525 VAL HG12 H N N 526 VAL HG13 H N N 527 VAL HG21 H N N 528 VAL HG22 H N N 529 VAL HG23 H N N 530 VAL HXT H N N 531 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 ILE N CA sing N N 265 ILE N H sing N N 266 ILE N H2 sing N N 267 ILE CA C sing N N 268 ILE CA CB sing N N 269 ILE CA HA sing N N 270 ILE C O doub N N 271 ILE C OXT sing N N 272 ILE CB CG1 sing N N 273 ILE CB CG2 sing N N 274 ILE CB HB sing N N 275 ILE CG1 CD1 sing N N 276 ILE CG1 HG12 sing N N 277 ILE CG1 HG13 sing N N 278 ILE CG2 HG21 sing N N 279 ILE CG2 HG22 sing N N 280 ILE CG2 HG23 sing N N 281 ILE CD1 HD11 sing N N 282 ILE CD1 HD12 sing N N 283 ILE CD1 HD13 sing N N 284 ILE OXT HXT sing N N 285 LEU N CA sing N N 286 LEU N H sing N N 287 LEU N H2 sing N N 288 LEU CA C sing N N 289 LEU CA CB sing N N 290 LEU CA HA sing N N 291 LEU C O doub N N 292 LEU C OXT sing N N 293 LEU CB CG sing N N 294 LEU CB HB2 sing N N 295 LEU CB HB3 sing N N 296 LEU CG CD1 sing N N 297 LEU CG CD2 sing N N 298 LEU CG HG sing N N 299 LEU CD1 HD11 sing N N 300 LEU CD1 HD12 sing N N 301 LEU CD1 HD13 sing N N 302 LEU CD2 HD21 sing N N 303 LEU CD2 HD22 sing N N 304 LEU CD2 HD23 sing N N 305 LEU OXT HXT sing N N 306 LYS N CA sing N N 307 LYS N H sing N N 308 LYS N H2 sing N N 309 LYS CA C sing N N 310 LYS CA CB sing N N 311 LYS CA HA sing N N 312 LYS C O doub N N 313 LYS C OXT sing N N 314 LYS CB CG sing N N 315 LYS CB HB2 sing N N 316 LYS CB HB3 sing N N 317 LYS CG CD sing N N 318 LYS CG HG2 sing N N 319 LYS CG HG3 sing N N 320 LYS CD CE sing N N 321 LYS CD HD2 sing N N 322 LYS CD HD3 sing N N 323 LYS CE NZ sing N N 324 LYS CE HE2 sing N N 325 LYS CE HE3 sing N N 326 LYS NZ HZ1 sing N N 327 LYS NZ HZ2 sing N N 328 LYS NZ HZ3 sing N N 329 LYS OXT HXT sing N N 330 MSE N CA sing N N 331 MSE N H sing N N 332 MSE N H2 sing N N 333 MSE CA C sing N N 334 MSE CA CB sing N N 335 MSE CA HA sing N N 336 MSE C O doub N N 337 MSE C OXT sing N N 338 MSE OXT HXT sing N N 339 MSE CB CG sing N N 340 MSE CB HB2 sing N N 341 MSE CB HB3 sing N N 342 MSE CG SE sing N N 343 MSE CG HG2 sing N N 344 MSE CG HG3 sing N N 345 MSE SE CE sing N N 346 MSE CE HE1 sing N N 347 MSE CE HE2 sing N N 348 MSE CE HE3 sing N N 349 PHE N CA sing N N 350 PHE N H sing N N 351 PHE N H2 sing N N 352 PHE CA C sing N N 353 PHE CA CB sing N N 354 PHE CA HA sing N N 355 PHE C O doub N N 356 PHE C OXT sing N N 357 PHE CB CG sing N N 358 PHE CB HB2 sing N N 359 PHE CB HB3 sing N N 360 PHE CG CD1 doub Y N 361 PHE CG CD2 sing Y N 362 PHE CD1 CE1 sing Y N 363 PHE CD1 HD1 sing N N 364 PHE CD2 CE2 doub Y N 365 PHE CD2 HD2 sing N N 366 PHE CE1 CZ doub Y N 367 PHE CE1 HE1 sing N N 368 PHE CE2 CZ sing Y N 369 PHE CE2 HE2 sing N N 370 PHE CZ HZ sing N N 371 PHE OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 SER N CA sing N N 390 SER N H sing N N 391 SER N H2 sing N N 392 SER CA C sing N N 393 SER CA CB sing N N 394 SER CA HA sing N N 395 SER C O doub N N 396 SER C OXT sing N N 397 SER CB OG sing N N 398 SER CB HB2 sing N N 399 SER CB HB3 sing N N 400 SER OG HG sing N N 401 SER OXT HXT sing N N 402 THR N CA sing N N 403 THR N H sing N N 404 THR N H2 sing N N 405 THR CA C sing N N 406 THR CA CB sing N N 407 THR CA HA sing N N 408 THR C O doub N N 409 THR C OXT sing N N 410 THR CB OG1 sing N N 411 THR CB CG2 sing N N 412 THR CB HB sing N N 413 THR OG1 HG1 sing N N 414 THR CG2 HG21 sing N N 415 THR CG2 HG22 sing N N 416 THR CG2 HG23 sing N N 417 THR OXT HXT sing N N 418 TRP N CA sing N N 419 TRP N H sing N N 420 TRP N H2 sing N N 421 TRP CA C sing N N 422 TRP CA CB sing N N 423 TRP CA HA sing N N 424 TRP C O doub N N 425 TRP C OXT sing N N 426 TRP CB CG sing N N 427 TRP CB HB2 sing N N 428 TRP CB HB3 sing N N 429 TRP CG CD1 doub Y N 430 TRP CG CD2 sing Y N 431 TRP CD1 NE1 sing Y N 432 TRP CD1 HD1 sing N N 433 TRP CD2 CE2 doub Y N 434 TRP CD2 CE3 sing Y N 435 TRP NE1 CE2 sing Y N 436 TRP NE1 HE1 sing N N 437 TRP CE2 CZ2 sing Y N 438 TRP CE3 CZ3 doub Y N 439 TRP CE3 HE3 sing N N 440 TRP CZ2 CH2 doub Y N 441 TRP CZ2 HZ2 sing N N 442 TRP CZ3 CH2 sing Y N 443 TRP CZ3 HZ3 sing N N 444 TRP CH2 HH2 sing N N 445 TRP OXT HXT sing N N 446 TYR N CA sing N N 447 TYR N H sing N N 448 TYR N H2 sing N N 449 TYR CA C sing N N 450 TYR CA CB sing N N 451 TYR CA HA sing N N 452 TYR C O doub N N 453 TYR C OXT sing N N 454 TYR CB CG sing N N 455 TYR CB HB2 sing N N 456 TYR CB HB3 sing N N 457 TYR CG CD1 doub Y N 458 TYR CG CD2 sing Y N 459 TYR CD1 CE1 sing Y N 460 TYR CD1 HD1 sing N N 461 TYR CD2 CE2 doub Y N 462 TYR CD2 HD2 sing N N 463 TYR CE1 CZ doub Y N 464 TYR CE1 HE1 sing N N 465 TYR CE2 CZ sing Y N 466 TYR CE2 HE2 sing N N 467 TYR CZ OH sing N N 468 TYR OH HH sing N N 469 TYR OXT HXT sing N N 470 U OP3 P sing N N 471 U OP3 HOP3 sing N N 472 U P OP1 doub N N 473 U P OP2 sing N N 474 U P "O5'" sing N N 475 U OP2 HOP2 sing N N 476 U "O5'" "C5'" sing N N 477 U "C5'" "C4'" sing N N 478 U "C5'" "H5'" sing N N 479 U "C5'" "H5''" sing N N 480 U "C4'" "O4'" sing N N 481 U "C4'" "C3'" sing N N 482 U "C4'" "H4'" sing N N 483 U "O4'" "C1'" sing N N 484 U "C3'" "O3'" sing N N 485 U "C3'" "C2'" sing N N 486 U "C3'" "H3'" sing N N 487 U "O3'" "HO3'" sing N N 488 U "C2'" "O2'" sing N N 489 U "C2'" "C1'" sing N N 490 U "C2'" "H2'" sing N N 491 U "O2'" "HO2'" sing N N 492 U "C1'" N1 sing N N 493 U "C1'" "H1'" sing N N 494 U N1 C2 sing N N 495 U N1 C6 sing N N 496 U C2 O2 doub N N 497 U C2 N3 sing N N 498 U N3 C4 sing N N 499 U N3 H3 sing N N 500 U C4 O4 doub N N 501 U C4 C5 sing N N 502 U C5 C6 doub N N 503 U C5 H5 sing N N 504 U C6 H6 sing N N 505 VAL N CA sing N N 506 VAL N H sing N N 507 VAL N H2 sing N N 508 VAL CA C sing N N 509 VAL CA CB sing N N 510 VAL CA HA sing N N 511 VAL C O doub N N 512 VAL C OXT sing N N 513 VAL CB CG1 sing N N 514 VAL CB CG2 sing N N 515 VAL CB HB sing N N 516 VAL CG1 HG11 sing N N 517 VAL CG1 HG12 sing N N 518 VAL CG1 HG13 sing N N 519 VAL CG2 HG21 sing N N 520 VAL CG2 HG22 sing N N 521 VAL CG2 HG23 sing N N 522 VAL OXT HXT sing N N 523 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9M86 'double helix' 9M86 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 2 1_555 B C 30 1_555 -0.260 -0.170 -0.936 -13.936 -9.833 1.686 1 B_G48:C76_B B 48 ? B 76 ? 19 1 1 B C 3 1_555 B G 29 1_555 0.151 -0.212 -0.494 -0.719 -9.652 2.743 2 B_C49:G75_B B 49 ? B 75 ? 19 1 1 B A 4 1_555 B U 28 1_555 0.325 -0.062 -0.751 -12.139 11.412 -1.323 3 B_A50:U74_B B 50 ? B 74 ? 20 1 1 B U 5 1_555 B A 26 1_555 -0.171 -0.208 0.861 -1.097 -16.634 -7.624 4 B_U51:A72_B B 51 ? B 72 ? 20 1 1 B G 6 1_555 B C 25 1_555 -0.150 -0.051 -0.125 -3.558 -14.036 0.497 5 B_G52:C71_B B 52 ? B 71 ? 19 1 1 B G 7 1_555 B A 24 1_555 -0.231 1.923 -0.631 4.551 -16.592 2.330 6 B_G53:A70_B B 53 ? B 70 ? ? 1 1 B C 8 1_555 B G 23 1_555 0.154 -0.057 -0.155 -5.980 -15.343 4.330 7 B_C54:G69_B B 54 ? B 69 ? 19 1 1 B C 9 1_555 B A 21 1_555 -2.643 0.484 -1.004 9.505 -12.139 -0.149 8 B_C55:A67_B B 55 ? B 67 ? ? ? 1 B C 10 1_555 B G 20 1_555 -0.776 0.543 -0.115 3.068 -12.512 15.006 9 B_C56:G66_B B 56 ? B 66 ? ? 1 1 B C 11 1_555 B G 19 1_555 0.168 -0.194 -0.003 -0.490 -8.647 -0.330 10 B_C57:G65_B B 57 ? B 65 ? 19 1 1 B U 12 1_555 B A 18 1_555 0.033 -0.155 0.250 0.552 11.096 2.423 11 B_U58:A64_B B 58 ? B 64 ? 20 1 1 B G 13 1_555 B A 17 1_555 6.658 -4.024 0.650 21.100 14.161 3.798 12 B_G59:A63_B B 59 ? B 63 ? 11 9 1 D G 2 1_555 D C 30 1_555 -0.266 -0.258 0.030 -0.576 -19.468 -0.135 13 D_G48:C76_D D 48 ? D 76 ? 19 1 1 D C 3 1_555 D G 29 1_555 0.161 -0.191 0.373 3.678 -6.798 0.800 14 D_C49:G75_D D 49 ? D 75 ? 19 1 1 D A 4 1_555 D U 28 1_555 -0.201 0.171 0.033 -0.613 -17.694 15.160 15 D_A50:U74_D D 50 ? D 74 ? 20 1 1 D U 5 1_555 D A 26 1_555 -0.004 -0.012 -0.001 -3.888 -8.541 0.011 16 D_U51:A72_D D 51 ? D 72 ? 20 1 1 D G 6 1_555 D C 25 1_555 -0.073 -0.030 0.568 6.611 -16.072 1.146 17 D_G52:C71_D D 52 ? D 71 ? 19 1 1 D G 7 1_555 D A 24 1_555 0.447 1.464 0.162 14.746 -15.919 -12.807 18 D_G53:A70_D D 53 ? D 70 ? 8 1 1 D C 8 1_555 D G 23 1_555 0.051 -0.090 0.286 -4.035 -10.618 -0.071 19 D_C54:G69_D D 54 ? D 69 ? 19 1 1 D C 9 1_555 D A 21 1_555 -3.212 0.461 -0.907 16.847 -10.698 2.990 20 D_C55:A67_D D 55 ? D 67 ? ? ? 1 D C 10 1_555 D G 20 1_555 0.193 -0.195 0.054 0.512 -6.196 0.917 21 D_C56:G66_D D 56 ? D 66 ? 19 1 1 D C 11 1_555 D G 19 1_555 0.133 -0.096 0.107 -1.838 -4.397 3.288 22 D_C57:G65_D D 57 ? D 65 ? 19 1 1 D U 12 1_555 D A 18 1_555 -0.019 -0.259 0.396 4.001 13.210 0.524 23 D_U58:A64_D D 58 ? D 64 ? 20 1 1 D G 13 1_555 D A 17 1_555 6.789 -4.166 0.846 19.402 12.272 0.861 24 D_G59:A63_D D 59 ? D 63 ? 11 9 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 2 1_555 B C 30 1_555 B C 3 1_555 B G 29 1_555 -0.089 -0.796 3.116 -6.900 4.857 36.837 -1.819 -0.700 2.959 7.564 10.746 37.759 1 BB_G48C49:G75C76_BB B 48 ? B 76 ? B 49 ? B 75 ? 1 B C 3 1_555 B G 29 1_555 B A 4 1_555 B U 28 1_555 0.424 -1.638 3.833 0.936 -1.292 31.235 -2.749 -0.577 3.907 -2.398 -1.736 31.275 2 BB_C49A50:U74G75_BB B 49 ? B 75 ? B 50 ? B 74 ? 1 B A 4 1_555 B U 28 1_555 B U 5 1_555 B A 26 1_555 2.298 -2.001 2.976 -15.969 29.414 56.102 -2.753 -2.628 1.261 28.645 15.551 64.624 3 BB_A50U51:A72U74_BB B 50 ? B 74 ? B 51 ? B 72 ? 1 B U 5 1_555 B A 26 1_555 B G 6 1_555 B C 25 1_555 0.118 -1.942 3.344 4.165 0.900 28.530 -4.103 0.706 3.266 1.813 -8.392 28.840 4 BB_U51G52:C71A72_BB B 51 ? B 72 ? B 52 ? B 71 ? 1 B G 6 1_555 B C 25 1_555 B G 7 1_555 B A 24 1_555 -0.997 -1.982 3.163 1.073 -0.478 16.444 -6.596 4.190 3.147 -1.668 -3.745 16.486 5 BB_G52G53:A70C71_BB B 52 ? B 71 ? B 53 ? B 70 ? 1 B G 7 1_555 B A 24 1_555 B C 8 1_555 B G 23 1_555 0.064 -1.198 3.485 -6.318 2.388 33.820 -2.412 -1.140 3.330 4.054 10.728 34.468 6 BB_G53C54:G69A70_BB B 53 ? B 70 ? B 54 ? B 69 ? 1 B C 8 1_555 B G 23 1_555 B C 9 1_555 B A 21 1_555 0.428 -1.757 4.038 -28.465 19.194 34.404 -3.803 -2.977 2.000 25.856 38.344 48.234 7 BB_C54C55:A67G69_BB B 54 ? B 69 ? B 55 ? B 67 ? 1 B C 9 1_555 B A 21 1_555 B C 10 1_555 B G 20 1_555 0.660 -1.354 3.520 -9.280 3.883 38.202 -2.480 -2.111 3.134 5.811 13.888 39.457 8 BB_C55C56:G66A67_BB B 55 ? B 67 ? B 56 ? B 66 ? 1 B C 10 1_555 B G 20 1_555 B C 11 1_555 B G 19 1_555 -0.783 -1.786 3.363 -2.495 5.640 38.367 -3.371 0.874 3.122 8.515 3.766 38.841 9 BB_C56C57:G65G66_BB B 56 ? B 66 ? B 57 ? B 65 ? 1 B C 11 1_555 B G 19 1_555 B U 12 1_555 B A 18 1_555 -0.377 -2.153 3.260 -5.053 8.165 23.338 -7.086 -0.468 2.408 19.176 11.868 25.210 10 BB_C57U58:A64G65_BB B 57 ? B 65 ? B 58 ? B 64 ? 1 B U 12 1_555 B A 18 1_555 B G 13 1_555 B A 17 1_555 0.465 -0.642 2.888 -0.708 5.142 57.349 -0.910 -0.517 2.821 5.346 0.736 57.563 11 BB_U58G59:A63A64_BB B 58 ? B 64 ? B 59 ? B 63 ? 1 D G 2 1_555 D C 30 1_555 D C 3 1_555 D G 29 1_555 -0.034 -1.112 2.973 -6.515 10.623 36.985 -2.783 -0.632 2.541 16.192 9.930 38.958 12 DD_G48C49:G75C76_DD D 48 ? D 76 ? D 49 ? D 75 ? 1 D C 3 1_555 D G 29 1_555 D A 4 1_555 D U 28 1_555 0.918 -1.715 3.143 3.729 7.962 30.554 -4.467 -1.053 2.711 14.730 -6.899 31.764 13 DD_C49A50:U74G75_DD D 49 ? D 75 ? D 50 ? D 74 ? 1 D A 4 1_555 D U 28 1_555 D U 5 1_555 D A 26 1_555 0.787 -1.126 3.285 -0.786 3.984 45.928 -1.776 -1.072 3.169 5.093 1.006 46.098 14 DD_A50U51:A72U74_DD D 50 ? D 74 ? D 51 ? D 72 ? 1 D U 5 1_555 D A 26 1_555 D G 6 1_555 D C 25 1_555 0.113 -1.644 2.746 -4.598 12.961 31.226 -4.342 -0.737 1.899 22.746 8.069 34.051 15 DD_U51G52:C71A72_DD D 51 ? D 72 ? D 52 ? D 71 ? 1 D G 6 1_555 D C 25 1_555 D G 7 1_555 D A 24 1_555 -1.160 -1.686 3.193 -0.660 3.897 22.606 -5.531 2.697 2.897 9.845 1.667 22.945 16 DD_G52G53:A70C71_DD D 52 ? D 71 ? D 53 ? D 70 ? 1 D G 7 1_555 D A 24 1_555 D C 8 1_555 D G 23 1_555 0.666 -1.554 3.378 0.965 1.332 35.509 -2.744 -0.946 3.335 2.182 -1.581 35.546 17 DD_G53C54:G69A70_DD D 53 ? D 70 ? D 54 ? D 69 ? 1 D C 8 1_555 D G 23 1_555 D C 9 1_555 D A 21 1_555 1.054 -2.357 3.891 -26.563 19.116 30.910 -4.717 -3.634 1.132 27.905 38.777 44.723 18 DD_C54C55:A67G69_DD D 54 ? D 69 ? D 55 ? D 67 ? 1 D C 9 1_555 D A 21 1_555 D C 10 1_555 D G 20 1_555 -0.232 -1.357 3.832 -11.125 4.476 47.452 -2.037 -0.705 3.661 5.461 13.572 48.859 19 DD_C55C56:G66A67_DD D 55 ? D 67 ? D 56 ? D 66 ? 1 D C 10 1_555 D G 20 1_555 D C 11 1_555 D G 19 1_555 -0.139 -2.017 3.237 0.153 2.598 31.011 -4.239 0.287 3.061 4.848 -0.285 31.117 20 DD_C56C57:G65G66_DD D 56 ? D 66 ? D 57 ? D 65 ? 1 D C 11 1_555 D G 19 1_555 D U 12 1_555 D A 18 1_555 -0.397 -2.091 3.115 -5.041 4.652 24.688 -5.913 -0.399 2.708 10.621 11.509 25.609 21 DD_C57U58:A64G65_DD D 57 ? D 65 ? D 58 ? D 64 ? 1 D U 12 1_555 D A 18 1_555 D G 13 1_555 D A 17 1_555 0.272 -0.902 2.877 2.233 8.220 58.090 -1.289 -0.178 2.746 8.416 -2.286 58.657 22 DD_U58G59:A63A64_DD D 58 ? D 64 ? D 59 ? D 63 ? # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 23H00368 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name AlphaFold _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9M86 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.022658 _atom_sites.fract_transf_matrix[1][2] -0.011610 _atom_sites.fract_transf_matrix[1][3] -0.000263 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023838 _atom_sites.fract_transf_matrix[2][3] -0.000804 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016189 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S SE # loop_ #