HEADER IMMUNE SYSTEM 14-MAR-25 9MAP TITLE CRYSTAL STRUCTURE OF GAGWLP AND PD-L1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH 1 LIGAND 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PD-L1,PDCD1 LIGAND 1,PROGRAMMED DEATH LIGAND 1,HPD-L1,B7 COMPND 5 HOMOLOG 1,B7-H1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: G-AGWLP; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD274, B7H1, PDCD1L1, PDCD1LG1, PDL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PD-L1, G-AGWLP, COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.YANG,M.R.CHEN,Y.B.XIAO REVDAT 1 03-DEC-25 9MAP 0 JRNL AUTH P.YANG JRNL TITL CRYSTAL STRUCTURE OF PD-L1 AND G-AGWLP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.2_5419: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.274 REMARK 3 R VALUE (WORKING SET) : 0.273 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7800 - 7.2300 1.00 1341 150 0.2998 0.3094 REMARK 3 2 7.2200 - 5.7400 1.00 1269 140 0.2725 0.2781 REMARK 3 3 5.7400 - 5.0200 1.00 1251 139 0.2469 0.2469 REMARK 3 4 5.0100 - 4.5600 1.00 1227 137 0.2324 0.2397 REMARK 3 5 4.5500 - 4.2300 1.00 1227 136 0.2348 0.2762 REMARK 3 6 4.2300 - 3.9800 0.99 1206 134 0.2431 0.2635 REMARK 3 7 3.9800 - 3.7800 1.00 1213 135 0.2570 0.3082 REMARK 3 8 3.7800 - 3.6200 1.00 1222 137 0.2504 0.2504 REMARK 3 9 3.6100 - 3.4800 1.00 1221 135 0.2954 0.2954 REMARK 3 10 3.4800 - 3.3600 1.00 1204 134 0.2984 0.3433 REMARK 3 11 3.3600 - 3.2500 1.00 1208 135 0.3071 0.3282 REMARK 3 12 3.2500 - 3.1600 1.00 1203 132 0.2878 0.2878 REMARK 3 13 3.1600 - 3.0800 1.00 1203 134 0.3303 0.3303 REMARK 3 14 3.0800 - 3.0000 1.00 1193 133 0.4092 0.4323 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 NULL REMARK 3 ANGLE : 0.544 NULL REMARK 3 CHIRALITY : 0.045 177 REMARK 3 PLANARITY : 0.004 207 REMARK 3 DIHEDRAL : 14.295 435 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -34.2462 -20.3613 -3.9241 REMARK 3 T TENSOR REMARK 3 T11: 0.6828 T22: 0.8458 REMARK 3 T33: 0.6111 T12: 0.0131 REMARK 3 T13: 0.0217 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 3.8113 L22: 3.0314 REMARK 3 L33: 1.1232 L12: 0.8727 REMARK 3 L13: -0.2173 L23: -0.0980 REMARK 3 S TENSOR REMARK 3 S11: 0.0376 S12: -0.2378 S13: -0.0556 REMARK 3 S21: 0.1565 S22: -0.0488 S23: -0.0115 REMARK 3 S31: -0.2151 S32: -0.1243 S33: -0.0132 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9MAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 19-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1300057510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-24 REMARK 200 TEMPERATURE (KELVIN) : 193.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35632 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 49.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 400.3 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 90.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 13.6 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0,2.04M NAH2PO4 AND K2HPO4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X,-Y+1/2,Z REMARK 290 27555 -X+1/2,Y,-Z REMARK 290 28555 X,-Y,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z,-X,-Y+1/2 REMARK 290 31555 -Z,-X+1/2,Y REMARK 290 32555 -Z+1/2,X,-Y REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z,-X REMARK 290 35555 Y,-Z,-X+1/2 REMARK 290 36555 -Y,-Z+1/2,X REMARK 290 37555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 38555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 39555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 40555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 41555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 42555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 43555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 44555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 45555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 46555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 47555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 48555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 111.30250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.30250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 111.30250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 111.30250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 111.30250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 111.30250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 111.30250 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 111.30250 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 111.30250 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 111.30250 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 111.30250 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 111.30250 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 111.30250 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 111.30250 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 111.30250 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 111.30250 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 111.30250 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 111.30250 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 166.95375 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 55.65125 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 55.65125 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 166.95375 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 166.95375 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 166.95375 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 55.65125 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 55.65125 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 166.95375 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 55.65125 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 166.95375 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 55.65125 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 166.95375 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 55.65125 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 55.65125 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 55.65125 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 166.95375 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 55.65125 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 166.95375 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 166.95375 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 166.95375 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 55.65125 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 55.65125 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 166.95375 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 166.95375 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 55.65125 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 55.65125 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 55.65125 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 55.65125 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 166.95375 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 55.65125 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 166.95375 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 55.65125 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 166.95375 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 166.95375 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 166.95375 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 111.30250 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 111.30250 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 111.30250 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 111.30250 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 111.30250 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 111.30250 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 111.30250 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 111.30250 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 111.30250 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 111.30250 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 111.30250 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 111.30250 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 111.30250 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 111.30250 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 111.30250 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 111.30250 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 111.30250 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 111.30250 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 55.65125 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 166.95375 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 166.95375 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 55.65125 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 55.65125 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 55.65125 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 166.95375 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 166.95375 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 55.65125 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 166.95375 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 55.65125 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 166.95375 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 55.65125 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 166.95375 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 166.95375 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 166.95375 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 55.65125 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 166.95375 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 55.65125 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 55.65125 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 55.65125 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 166.95375 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 166.95375 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 55.65125 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 55.65125 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 166.95375 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 166.95375 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 166.95375 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 166.95375 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 55.65125 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 166.95375 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 55.65125 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 166.95375 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 55.65125 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 55.65125 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 55.65125 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -152.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 -55.65125 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -55.65125 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -55.65125 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 -55.65125 REMARK 350 BIOMT2 5 0.000000 0.000000 -1.000000 -55.65125 REMARK 350 BIOMT3 5 0.000000 -1.000000 0.000000 -55.65125 REMARK 350 BIOMT1 6 0.000000 0.000000 -1.000000 -55.65125 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 -55.65125 REMARK 350 BIOMT3 6 -1.000000 0.000000 0.000000 -55.65125 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 -55.65125 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -55.65125 REMARK 350 BIOMT3 2 -1.000000 0.000000 0.000000 -55.65125 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -111.30250 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 0.000000 1.000000 -55.65125 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -55.65125 REMARK 350 BIOMT3 4 1.000000 0.000000 0.000000 55.65125 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 82 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 46 -130.31 37.83 REMARK 500 GLU A 60 -130.96 53.68 REMARK 500 GLU B 17 -11.50 73.92 REMARK 500 REMARK 500 REMARK: NULL DBREF 9MAP A 18 133 UNP Q9NZQ7 PD1L1_HUMAN 18 133 DBREF 9MAP B 1 28 PDB 9MAP 9MAP 1 28 SEQADV 9MAP ALA A 15 UNP Q9NZQ7 EXPRESSION TAG SEQADV 9MAP ALA A 16 UNP Q9NZQ7 EXPRESSION TAG SEQADV 9MAP ALA A 17 UNP Q9NZQ7 EXPRESSION TAG SEQADV 9MAP HIS A 134 UNP Q9NZQ7 EXPRESSION TAG SEQADV 9MAP ALA A 135 UNP Q9NZQ7 EXPRESSION TAG SEQADV 9MAP ALA A 136 UNP Q9NZQ7 EXPRESSION TAG SEQRES 1 A 122 ALA ALA ALA ALA PHE THR VAL THR VAL PRO LYS ASP LEU SEQRES 2 A 122 TYR VAL VAL GLU TYR GLY SER ASN MET THR ILE GLU CYS SEQRES 3 A 122 LYS PHE PRO VAL GLU LYS GLN LEU ASP LEU ALA ALA LEU SEQRES 4 A 122 ILE VAL TYR TRP GLU MET GLU ASP LYS ASN ILE ILE GLN SEQRES 5 A 122 PHE VAL HIS GLY GLU GLU ASP LEU LYS VAL GLN HIS SER SEQRES 6 A 122 SER TYR ARG GLN ARG ALA ARG LEU LEU LYS ASP GLN LEU SEQRES 7 A 122 SER LEU GLY ASN ALA ALA LEU GLN ILE THR ASP VAL LYS SEQRES 8 A 122 LEU GLN ASP ALA GLY VAL TYR ARG CYS MET ILE SER TYR SEQRES 9 A 122 GLY GLY ALA ASP TYR LYS ARG ILE THR VAL LYS VAL ASN SEQRES 10 A 122 ALA PRO HIS ALA ALA SEQRES 1 B 28 GLY CYS PRO ALA ASP CYS TYR GLU TYR CYS ARG GLY VAL SEQRES 2 B 28 PRO PHE CYS GLU LEU GLY TRP SER LEU ARG CYS PRO PRO SEQRES 3 B 28 HIS CYS HET PO4 A 201 5 HET CA B 101 1 HET CL B 102 1 HETNAM PO4 PHOSPHATE ION HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 3 PO4 O4 P 3- FORMUL 4 CA CA 2+ FORMUL 5 CL CL 1- FORMUL 6 HOH *2(H2 O) HELIX 1 AA1 ASP A 49 ALA A 52 5 4 HELIX 2 AA2 HIS A 78 ARG A 82 5 5 HELIX 3 AA3 LYS A 89 GLY A 95 5 7 HELIX 4 AA4 LYS A 105 ALA A 109 5 5 HELIX 5 AA5 ASP B 5 ARG B 11 1 7 SHEET 1 AA1 6 LEU A 27 VAL A 30 0 SHEET 2 AA1 6 ALA A 121 VAL A 130 1 O LYS A 129 N TYR A 28 SHEET 3 AA1 6 GLY A 110 SER A 117 -1 N TYR A 112 O ILE A 126 SHEET 4 AA1 6 ILE A 54 MET A 59 -1 N TYR A 56 O MET A 115 SHEET 5 AA1 6 LYS A 62 VAL A 68 -1 O ILE A 64 N TRP A 57 SHEET 6 AA1 6 GLU A 71 GLU A 72 -1 O GLU A 71 N VAL A 68 SHEET 1 AA2 3 MET A 36 ILE A 38 0 SHEET 2 AA2 3 LEU A 99 ILE A 101 -1 O LEU A 99 N ILE A 38 SHEET 3 AA2 3 ALA A 85 LEU A 87 -1 N ARG A 86 O GLN A 100 SSBOND 1 CYS A 40 CYS A 114 1555 1555 2.03 SSBOND 2 CYS B 2 CYS B 28 1555 1555 2.03 SSBOND 3 CYS B 6 CYS B 24 1555 1555 2.04 SSBOND 4 CYS B 10 CYS B 16 1555 1555 2.04 CRYST1 222.605 222.605 222.605 90.00 90.00 90.00 I 41 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004492 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004492 0.00000 CONECT 184 782 CONECT 782 184 CONECT 958 1165 CONECT 984 1135 CONECT 1023 1069 CONECT 1069 1023 CONECT 1135 984 CONECT 1165 958 CONECT 1167 1168 1169 1170 1171 CONECT 1168 1167 CONECT 1169 1167 CONECT 1170 1167 CONECT 1171 1167 MASTER 480 0 3 5 9 0 0 6 1173 2 13 13 END