HEADER HYDROLASE 17-MAR-25 9MBE TITLE NEUTRON CRYSTAL STRUCTURE OF HUMAN MTH1(G2K/C87A/C104S MUTANT) IN TITLE 2 COMPLEX WITH 8-OXO-DGTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-HYDROXY-DATP DIPHOSPHATASE,8-OXO-DGTPASE,NUCLEOSIDE COMPND 5 DIPHOSPHATE-LINKED MOIETY X MOTIF 1,NUDIX MOTIF 1; COMPND 6 EC: 3.6.1.55,3.6.1.56; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT1, MTH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDIZED PURINE NUCLEOSIDE TRIPHOSPHATE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION; NEUTRON DIFFRACTION AUTHOR K.FUJIMIYA,K.HIRATA,A.OSTERMANN,T.E.SCHRADER,T.HIROMOTO,T.ARIMORI, AUTHOR 2 Y.HIRANO,T.TAMADA,T.NAKAMURA REVDAT 1 30-JUL-25 9MBE 0 JRNL AUTH K.HIRATA,K.FUJIMIYA,A.OSTERMANN,T.E.SCHRADER,T.HIROMOTO, JRNL AUTH 2 M.GOTO,T.ARIMORI,Y.HIRANO,K.KUSAKA,T.TAMADA,T.NAKAMURA JRNL TITL NEUTRON AND TIME-RESOLVED X-RAY CRYSTALLOGRAPHY REVEAL THE JRNL TITL 2 SUBSTRATE RECOGNITION AND CATALYTIC MECHANISM OF HUMAN NUDIX JRNL TITL 3 HYDROLASE MTH1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 85122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 40674425 JRNL DOI 10.1073/PNAS.2510085122 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 X-RAY DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 53817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0800 - 3.7300 0.99 2945 162 0.1674 0.1781 REMARK 3 2 3.7300 - 2.9600 1.00 2817 150 0.1551 0.1687 REMARK 3 3 2.9600 - 2.5900 0.99 2785 141 0.1729 0.1996 REMARK 3 4 2.5900 - 2.3500 0.99 2757 140 0.1718 0.1822 REMARK 3 5 2.3500 - 2.1800 0.98 2680 136 0.1647 0.1993 REMARK 3 6 2.1800 - 2.0600 0.98 2739 145 0.1636 0.1755 REMARK 3 7 2.0600 - 1.9500 0.98 2691 148 0.1688 0.2183 REMARK 3 8 1.9500 - 1.8700 0.98 2702 144 0.1705 0.2117 REMARK 3 9 1.8700 - 1.8000 0.98 2666 136 0.1807 0.1872 REMARK 3 10 1.8000 - 1.7300 0.98 2686 145 0.1793 0.2066 REMARK 3 11 1.7300 - 1.6800 0.98 2649 147 0.1823 0.2265 REMARK 3 12 1.6800 - 1.6300 0.98 2654 139 0.1870 0.2021 REMARK 3 13 1.6300 - 1.5900 0.97 2639 131 0.1854 0.2190 REMARK 3 14 1.5900 - 1.5500 0.97 2644 135 0.1965 0.2402 REMARK 3 15 1.5500 - 1.5100 0.97 2622 138 0.1929 0.1856 REMARK 3 16 1.5100 - 1.4800 0.97 2612 149 0.2038 0.2451 REMARK 3 17 1.4800 - 1.4500 0.96 2633 128 0.2082 0.2248 REMARK 3 18 1.4500 - 1.4300 0.96 2606 128 0.2102 0.2750 REMARK 3 19 1.4300 - 1.4000 0.96 2602 146 0.2237 0.2371 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.131 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5940 REMARK 3 ANGLE : 1.573 10618 REMARK 3 CHIRALITY : 0.094 391 REMARK 3 PLANARITY : 0.007 1128 REMARK 3 DIHEDRAL : 18.188 1667 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 NEUTRON DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 83.5 REMARK 3 NUMBER OF REFLECTIONS : 26267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 1.7600 - 1.7000 0.00 2428 0 0.2995 0.3497 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.131 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9MBE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1300052372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53822 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 32.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.20300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 29-MAY-18 REMARK 230 TEMPERATURE (KELVIN) : 100.0 REMARK 230 PH : NULL REMARK 230 NUMBER OF CRYSTALS USED : NULL REMARK 230 REMARK 230 NEUTRON SOURCE : NUCLEAR REACTOR REMARK 230 BEAMLINE : BIODIFF REMARK 230 WAVELENGTH OR RANGE (A) : 3.1 REMARK 230 MONOCHROMATOR : NULL REMARK 230 OPTICS : NULL REMARK 230 REMARK 230 DETECTOR TYPE : IMAGE PLATE REMARK 230 DETECTOR MANUFACTURER : BIODIFF REMARK 230 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 230 DATA SCALING SOFTWARE : XDS REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 26291 REMARK 230 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 230 RESOLUTION RANGE LOW (A) : 38.050 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 83.7 REMARK 230 DATA REDUNDANCY : 2.600 REMARK 230 R MERGE (I) : 0.14200 REMARK 230 R SYM (I) : NULL REMARK 230 FOR THE DATA SET : 5.5000 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 230 COMPLETENESS FOR SHELL (%) : NULL REMARK 230 DATA REDUNDANCY IN SHELL : NULL REMARK 230 R MERGE FOR SHELL (I) : 0.38700 REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : NULL REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 230 SOFTWARE USED : PHENIX REMARK 230 STARTING MODEL: NULL REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, CACODYLATE, NACL, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.92500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.08000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.92500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.08000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS B 24 O SER B 98 1.53 REMARK 500 DZ2 LYS B 24 O SER B 98 1.54 REMARK 500 HD2 ASP A 119 O6 8DG A 201 1.54 REMARK 500 DD2 ASP A 119 O6 8DG A 201 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 90 112.98 -179.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 36 O REMARK 620 2 GLU A 56 OE2 85.6 REMARK 620 3 8DG A 201 O2B 99.0 93.9 REMARK 620 4 8DG A 201 O1A 108.3 165.6 87.5 REMARK 620 5 HOH A 371 O 165.4 88.9 67.8 78.4 REMARK 620 6 HOH A 393 O 88.7 85.4 172.2 91.2 104.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 OE1 REMARK 620 2 GLU A 56 OE2 95.1 REMARK 620 3 8DG A 201 O2B 112.1 87.9 REMARK 620 4 HOH A 304 O 158.9 104.3 77.3 REMARK 620 5 HOH A 311 O 82.8 163.0 77.4 81.0 REMARK 620 6 HOH A 315 O 90.9 115.7 146.0 73.4 81.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 36 O REMARK 620 2 GLU B 52 OE1 77.9 REMARK 620 3 GLU B 56 OE2 85.9 106.7 REMARK 620 4 8DG B 201 O2B 107.0 129.2 123.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 36 O REMARK 620 2 GLU B 56 OE2 86.4 REMARK 620 3 8DG B 201 O2B 109.0 112.4 REMARK 620 4 8DG B 201 O1A 108.6 162.7 71.6 REMARK 620 5 HOH B 352 O 79.6 74.5 168.8 99.2 REMARK 620 N 1 2 3 4 DBREF 9MBE A 1 156 UNP P36639 8ODP_HUMAN 42 197 DBREF 9MBE B 1 156 UNP P36639 8ODP_HUMAN 42 197 SEQADV 9MBE LYS A 2 UNP P36639 GLY 43 ENGINEERED MUTATION SEQADV 9MBE ALA A 87 UNP P36639 CYS 128 ENGINEERED MUTATION SEQADV 9MBE SER A 104 UNP P36639 CYS 145 ENGINEERED MUTATION SEQADV 9MBE LYS B 2 UNP P36639 GLY 43 ENGINEERED MUTATION SEQADV 9MBE ALA B 87 UNP P36639 CYS 128 ENGINEERED MUTATION SEQADV 9MBE SER B 104 UNP P36639 CYS 145 ENGINEERED MUTATION SEQRES 1 A 156 MET LYS ALA SER ARG LEU TYR THR LEU VAL LEU VAL LEU SEQRES 2 A 156 GLN PRO GLN ARG VAL LEU LEU GLY MET LYS LYS ARG GLY SEQRES 3 A 156 PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY GLY LYS VAL SEQRES 4 A 156 GLN GLU GLY GLU THR ILE GLU ASP GLY ALA ARG ARG GLU SEQRES 5 A 156 LEU GLN GLU GLU SER GLY LEU THR VAL ASP ALA LEU HIS SEQRES 6 A 156 LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL GLY GLU PRO SEQRES 7 A 156 GLU LEU MET ASP VAL HIS VAL PHE ALA THR ASP SER ILE SEQRES 8 A 156 GLN GLY THR PRO VAL GLU SER ASP GLU MET ARG PRO SER SEQRES 9 A 156 TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS ASP MET TRP SEQRES 10 A 156 PRO ASP ASP SER TYR TRP PHE PRO LEU LEU LEU GLN LYS SEQRES 11 A 156 LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN GLY GLN ASP SEQRES 12 A 156 THR ILE LEU ASP TYR THR LEU ARG GLU VAL ASP THR VAL SEQRES 1 B 156 MET LYS ALA SER ARG LEU TYR THR LEU VAL LEU VAL LEU SEQRES 2 B 156 GLN PRO GLN ARG VAL LEU LEU GLY MET LYS LYS ARG GLY SEQRES 3 B 156 PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY GLY LYS VAL SEQRES 4 B 156 GLN GLU GLY GLU THR ILE GLU ASP GLY ALA ARG ARG GLU SEQRES 5 B 156 LEU GLN GLU GLU SER GLY LEU THR VAL ASP ALA LEU HIS SEQRES 6 B 156 LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL GLY GLU PRO SEQRES 7 B 156 GLU LEU MET ASP VAL HIS VAL PHE ALA THR ASP SER ILE SEQRES 8 B 156 GLN GLY THR PRO VAL GLU SER ASP GLU MET ARG PRO SER SEQRES 9 B 156 TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS ASP MET TRP SEQRES 10 B 156 PRO ASP ASP SER TYR TRP PHE PRO LEU LEU LEU GLN LYS SEQRES 11 B 156 LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN GLY GLN ASP SEQRES 12 B 156 THR ILE LEU ASP TYR THR LEU ARG GLU VAL ASP THR VAL HET 8DG A 201 49 HET NA A 202 1 HET NA A 203 1 HET 8DG B 201 39 HET NA B 202 2 HETNAM 8DG 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM NA SODIUM ION FORMUL 3 8DG 2(C10 H16 N5 O14 P3) FORMUL 4 NA 3(NA 1+) FORMUL 8 HOH *300(H2 O) HELIX 1 AA1 THR A 44 GLY A 58 1 15 HELIX 2 AA2 PRO A 112 MET A 116 5 5 HELIX 3 AA3 TRP A 117 PRO A 118 5 2 HELIX 4 AA4 ASP A 119 GLN A 129 1 11 HELIX 5 AA5 THR B 44 GLY B 58 1 15 HELIX 6 AA6 PRO B 112 MET B 116 5 5 HELIX 7 AA7 TRP B 117 PRO B 118 5 2 HELIX 8 AA8 ASP B 119 GLN B 129 1 11 SHEET 1 AA1 3 TRP A 32 ASN A 33 0 SHEET 2 AA1 3 ARG A 17 LYS A 23 -1 N GLY A 21 O ASN A 33 SHEET 3 AA1 3 MET A 101 GLN A 107 -1 O SER A 104 N LEU A 20 SHEET 1 AA2 7 TRP A 32 ASN A 33 0 SHEET 2 AA2 7 ARG A 17 LYS A 23 -1 N GLY A 21 O ASN A 33 SHEET 3 AA2 7 SER A 4 LEU A 13 -1 N VAL A 12 O LEU A 19 SHEET 4 AA2 7 LEU A 80 THR A 88 1 O PHE A 86 N LEU A 9 SHEET 5 AA2 7 HIS A 65 PHE A 74 -1 N ILE A 70 O VAL A 83 SHEET 6 AA2 7 PHE A 133 GLN A 140 1 O PHE A 139 N GLU A 73 SHEET 7 AA2 7 THR A 144 GLU A 152 -1 O ASP A 147 N LYS A 138 SHEET 1 AA3 4 TRP B 32 ASN B 33 0 SHEET 2 AA3 4 ARG B 17 LYS B 23 -1 N GLY B 21 O ASN B 33 SHEET 3 AA3 4 SER B 4 LEU B 13 -1 N VAL B 12 O LEU B 19 SHEET 4 AA3 4 MET B 101 GLN B 107 0 SHEET 1 AA4 7 PHE B 35 LYS B 38 0 SHEET 2 AA4 7 SER B 4 LEU B 13 -1 N VAL B 10 O PHE B 35 SHEET 3 AA4 7 ARG B 17 LYS B 23 -1 O LEU B 19 N VAL B 12 SHEET 4 AA4 7 LEU B 80 THR B 88 0 SHEET 5 AA4 7 HIS B 65 PHE B 74 -1 N GLY B 68 O VAL B 85 SHEET 6 AA4 7 PHE B 133 GLN B 140 1 O PHE B 139 N GLU B 73 SHEET 7 AA4 7 THR B 144 GLU B 152 -1 O ASP B 147 N LYS B 138 LINK O GLY A 36 NA NA A 202 1555 1555 2.32 LINK OE1 GLU A 52 NA NA A 203 1555 1555 2.26 LINK OE2 GLU A 56 NA NA A 202 1555 1555 2.25 LINK OE2 GLU A 56 NA NA A 203 1555 1555 2.49 LINK O2B 8DG A 201 NA NA A 202 1555 1555 2.36 LINK O1A 8DG A 201 NA NA A 202 1555 1555 2.29 LINK O2B 8DG A 201 NA NA A 203 1555 1555 2.36 LINK NA NA A 202 O HOH A 371 1555 1555 2.74 LINK NA NA A 202 O HOH A 393 1555 1555 2.34 LINK NA NA A 203 O HOH A 304 1555 1555 2.36 LINK NA NA A 203 O HOH A 311 1555 1555 2.83 LINK NA NA A 203 O HOH A 315 1555 1555 2.52 LINK O GLY B 36 NA B NA B 202 1555 1555 2.56 LINK O GLY B 36 NA A NA B 202 1555 1555 2.39 LINK OE1 GLU B 52 NA B NA B 202 1555 1555 2.70 LINK OE2 GLU B 56 NA B NA B 202 1555 1555 2.19 LINK OE2 GLU B 56 NA A NA B 202 1555 1555 2.36 LINK O2B 8DG B 201 NA B NA B 202 1555 1555 2.42 LINK O2B 8DG B 201 NA A NA B 202 1555 1555 2.54 LINK O1A 8DG B 201 NA A NA B 202 1555 1555 1.97 LINK NA A NA B 202 O HOH B 352 1555 1555 2.33 CRYST1 45.850 48.160 124.100 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021810 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020764 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008058 0.00000 CONECT 674 5742 CONECT 938 5743 CONECT 1020 5742 5743 CONECT 3531 5783 5784 CONECT 3797 5784 CONECT 3870 5783 5784 CONECT 5693 5694 5695 5696 5697 CONECT 5694 5693 CONECT 5695 5693 CONECT 5696 5693 CONECT 5697 5693 5698 CONECT 5698 5697 5699 5700 5701 CONECT 5699 5698 CONECT 5700 5698 5742 5743 CONECT 5701 5698 5702 CONECT 5702 5701 5703 5704 5705 CONECT 5703 5702 5742 CONECT 5704 5702 CONECT 5705 5702 5706 CONECT 5706 5705 5707 5725 5726 CONECT 5707 5706 5708 5709 5727 CONECT 5708 5707 5712 CONECT 5709 5707 5710 5711 5728 CONECT 5710 5709 5729 CONECT 5711 5709 5712 5731 5732 CONECT 5712 5708 5711 5713 5733 CONECT 5713 5712 5714 5723 CONECT 5714 5713 5715 5724 CONECT 5715 5714 5716 5734 CONECT 5716 5715 5717 5723 CONECT 5717 5716 5718 5719 CONECT 5718 5717 CONECT 5719 5717 5720 5736 CONECT 5720 5719 5721 5722 CONECT 5721 5720 5738 5740 CONECT 5722 5720 5723 CONECT 5723 5713 5716 5722 CONECT 5724 5714 CONECT 5725 5706 CONECT 5726 5706 CONECT 5727 5707 CONECT 5728 5709 CONECT 5729 5710 CONECT 5731 5711 CONECT 5732 5711 CONECT 5733 5712 CONECT 5734 5715 CONECT 5736 5719 CONECT 5738 5721 CONECT 5740 5721 CONECT 5742 674 1020 5700 5703 CONECT 5742 5877 5913 CONECT 5743 938 1020 5700 5788 CONECT 5743 5795 5801 CONECT 5744 5745 5746 5747 5748 CONECT 5745 5744 CONECT 5746 5744 CONECT 5747 5744 CONECT 5748 5744 5749 CONECT 5749 5748 5750 5751 5752 CONECT 5750 5749 CONECT 5751 5749 5783 5784 CONECT 5752 5749 5753 CONECT 5753 5752 5754 5755 5756 CONECT 5754 5753 5783 CONECT 5755 5753 CONECT 5756 5753 5757 CONECT 5757 5756 5758 5776 5777 CONECT 5758 5757 5759 5760 5778 CONECT 5759 5758 5763 CONECT 5760 5758 5761 5762 5779 CONECT 5761 5760 CONECT 5762 5760 5763 5780 5781 CONECT 5763 5759 5762 5764 5782 CONECT 5764 5763 5765 5774 CONECT 5765 5764 5766 5775 CONECT 5766 5765 5767 CONECT 5767 5766 5768 5774 CONECT 5768 5767 5769 5770 CONECT 5769 5768 CONECT 5770 5768 5771 CONECT 5771 5770 5772 5773 CONECT 5772 5771 CONECT 5773 5771 5774 CONECT 5774 5764 5767 5773 CONECT 5775 5765 CONECT 5776 5757 CONECT 5777 5757 CONECT 5778 5758 CONECT 5779 5760 CONECT 5780 5762 CONECT 5781 5762 CONECT 5782 5763 CONECT 5783 3531 3870 5751 5754 CONECT 5783 6076 CONECT 5784 3531 3797 3870 5751 CONECT 5788 5743 CONECT 5795 5743 CONECT 5801 5743 CONECT 5877 5742 CONECT 5913 5742 CONECT 6076 5783 MASTER 407 0 5 8 21 0 0 6 2907 2 102 24 END