HEADER VIRAL PROTEIN 08-DEC-24 9MES TITLE NMR STRUCUTURE OF DENGUE VIRUS 2 CAPSID PROTEIN WITH THE DELETION OF TITLE 2 THE INTRINSICALLY DISORDERED N-TERMINAL REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN C; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CORE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS TYPE 2; SOURCE 3 ORGANISM_TAXID: 11060; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CAPSID, DENGUE VIRUS, INTRINSICALLY DISORDERED REGION, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.M.BARBOSA,A.T.DA POIAN,F.C.L.ALMEIDA REVDAT 1 17-DEC-25 9MES 0 JRNL AUTH G.M.BARBOSA,A.T.DA POIAN,F.C.L.ALMEIDA JRNL TITL THE ROLE OF THE N-TERMINAL INTRINSICALLY DISORDERED REGION JRNL TITL 2 OF THE DENGUE VIRUS CAPSID PROTEIN IN PROTECTING HYDROPHOBIC JRNL TITL 3 SURFACES FROM FULL EXPOSURE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, PSVS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BHATTACHARYA AND MONTELIONE (PSVS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9MES COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1000289929. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 255 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 300 UM [U-13C; U-15N] DENGUE REMARK 210 VIRUS2 CAPSID PROTEIN WITH THE REMARK 210 DELETION OF THE INTRINSICALLY REMARK 210 DISORDERED N-TEMINAL REGION., 55 REMARK 210 MM SODIUM PHOSPHATE PH 6, 200 MM REMARK 210 SODIUM CHLORIDE, 5 % V/V [U-2H] REMARK 210 D2O, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 2D 1H-15N HSQC; 2D REMARK 210 1H-13C HSQC; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 MET A 19 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 23 132.43 -178.23 REMARK 500 1 PHE A 33 -62.86 73.91 REMARK 500 1 SER A 34 -67.74 -173.77 REMARK 500 1 ARG A 41 178.76 66.08 REMARK 500 1 THR A 58 -34.48 169.98 REMARK 500 1 SER A 75 -69.22 -153.15 REMARK 500 1 ARG A 99 74.10 58.98 REMARK 500 1 VAL B 23 132.52 -178.02 REMARK 500 1 PHE B 33 -63.17 73.88 REMARK 500 1 SER B 34 -67.88 -173.42 REMARK 500 1 ARG B 41 178.82 65.94 REMARK 500 1 THR B 58 -35.09 170.17 REMARK 500 1 SER B 75 -69.20 -153.48 REMARK 500 1 ARG B 99 73.92 59.00 REMARK 500 2 ASN A 21 133.17 69.21 REMARK 500 2 ARG A 22 -88.81 -113.58 REMARK 500 2 VAL A 23 -65.89 -162.72 REMARK 500 2 THR A 25 -72.38 67.20 REMARK 500 2 THR A 58 -40.18 175.74 REMARK 500 2 THR A 71 43.01 -140.94 REMARK 500 2 SER A 75 -73.52 -156.57 REMARK 500 2 ASN B 21 132.92 69.60 REMARK 500 2 ARG B 22 -88.50 -113.14 REMARK 500 2 VAL B 23 -66.52 -162.99 REMARK 500 2 THR B 25 -72.41 67.40 REMARK 500 2 THR B 58 -39.94 175.34 REMARK 500 2 THR B 71 42.88 -140.34 REMARK 500 2 SER B 75 -73.64 -157.13 REMARK 500 3 SER A 24 121.19 -177.26 REMARK 500 3 THR A 25 77.41 52.87 REMARK 500 3 VAL A 26 -38.77 -155.89 REMARK 500 3 PHE A 33 78.02 61.70 REMARK 500 3 SER A 34 175.05 69.34 REMARK 500 3 LEU A 57 -75.20 -64.18 REMARK 500 3 THR A 58 -26.55 164.17 REMARK 500 3 THR A 71 21.24 -149.41 REMARK 500 3 SER A 75 -62.92 -144.60 REMARK 500 3 SER B 24 121.41 -177.24 REMARK 500 3 THR B 25 77.68 52.62 REMARK 500 3 VAL B 26 -38.73 -156.15 REMARK 500 3 PHE B 33 77.65 62.46 REMARK 500 3 SER B 34 174.71 69.86 REMARK 500 3 LEU B 57 -75.06 -64.15 REMARK 500 3 THR B 58 -26.56 164.03 REMARK 500 3 THR B 71 20.88 -149.01 REMARK 500 3 SER B 75 -63.04 -144.68 REMARK 500 4 ARG A 20 20.75 -156.79 REMARK 500 4 VAL A 23 -63.90 -170.37 REMARK 500 4 SER A 24 141.40 -179.82 REMARK 500 4 VAL A 26 -43.93 -164.45 REMARK 500 REMARK 500 THIS ENTRY HAS 361 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 51073 RELATED DB: BMRB DBREF 9MES A 20 100 UNP P07564 POLG_DEN2J 20 100 DBREF 9MES B 20 100 UNP P07564 POLG_DEN2J 20 100 SEQADV 9MES MET A 19 UNP P07564 INITIATING METHIONINE SEQADV 9MES MET B 19 UNP P07564 INITIATING METHIONINE SEQRES 1 A 82 MET ARG ASN ARG VAL SER THR VAL GLN GLN LEU THR LYS SEQRES 2 A 82 ARG PHE SER LEU GLY MET LEU GLN GLY ARG GLY PRO LEU SEQRES 3 A 82 LYS LEU PHE MET ALA LEU VAL ALA PHE LEU ARG PHE LEU SEQRES 4 A 82 THR ILE PRO PRO THR ALA GLY ILE LEU LYS ARG TRP GLY SEQRES 5 A 82 THR ILE LYS LYS SER LYS ALA ILE ASN VAL LEU ARG GLY SEQRES 6 A 82 PHE ARG LYS GLU ILE GLY ARG MET LEU ASN ILE LEU ASN SEQRES 7 A 82 ARG ARG ARG ARG SEQRES 1 B 82 MET ARG ASN ARG VAL SER THR VAL GLN GLN LEU THR LYS SEQRES 2 B 82 ARG PHE SER LEU GLY MET LEU GLN GLY ARG GLY PRO LEU SEQRES 3 B 82 LYS LEU PHE MET ALA LEU VAL ALA PHE LEU ARG PHE LEU SEQRES 4 B 82 THR ILE PRO PRO THR ALA GLY ILE LEU LYS ARG TRP GLY SEQRES 5 B 82 THR ILE LYS LYS SER LYS ALA ILE ASN VAL LEU ARG GLY SEQRES 6 B 82 PHE ARG LYS GLU ILE GLY ARG MET LEU ASN ILE LEU ASN SEQRES 7 B 82 ARG ARG ARG ARG HELIX 1 AA1 VAL A 23 ARG A 32 1 10 HELIX 2 AA2 PRO A 43 THR A 58 1 16 HELIX 3 AA3 THR A 62 TRP A 69 1 8 HELIX 4 AA4 SER A 75 ARG A 98 1 24 HELIX 5 AA5 VAL B 23 ARG B 32 1 10 HELIX 6 AA6 PRO B 43 THR B 58 1 16 HELIX 7 AA7 THR B 62 TRP B 69 1 8 HELIX 8 AA8 SER B 75 ARG B 98 1 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL MASTER 157 0 0 8 0 0 0 6 1339 2 0 14 END