data_9MFH # _entry.id 9MFH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.406 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9MFH pdb_00009mfh 10.2210/pdb9mfh/pdb WWPDB D_1000290873 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-09-24 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9MFH _pdbx_database_status.recvd_initial_deposition_date 2024-12-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email robert.batey@colorado.edu _pdbx_contact_author.name_first Robert _pdbx_contact_author.name_last Batey _pdbx_contact_author.name_mi T. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1384-6625 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Olenginski, L.T.' 1 0000-0002-2519-6615 'Batey, R.T.' 2 0000-0002-1384-6625 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Designing small molecules targeting a cryptic RNA binding site through base displacement.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-025-02018-8 _citation.pdbx_database_id_PubMed 40883492 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Olenginski, L.T.' 1 0000-0002-2519-6615 primary 'Wierzba, A.J.' 2 0000-0001-8347-5498 primary 'Laursen, S.P.' 3 0000-0001-6308-0763 primary 'Batey, R.T.' 4 0000-0002-1384-6625 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (76-MER)' 24571.738 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 8 ? ? ? ? 3 water nat water 18.015 181 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGUAAAAGCAUAGUGGGAAAGUGACGUGAAAUUCGUCCACACGAAAGUAAGGUCAUAGUCCGAAUGCCACCUACCA _entity_poly.pdbx_seq_one_letter_code_can GGUAAAAGCAUAGUGGGAAAGUGACGUGAAAUUCGUCCACACGAAAGUAAGGUCAUAGUCCGAAUGCCACCUACCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 A n 1 5 A n 1 6 A n 1 7 A n 1 8 G n 1 9 C n 1 10 A n 1 11 U n 1 12 A n 1 13 G n 1 14 U n 1 15 G n 1 16 G n 1 17 G n 1 18 A n 1 19 A n 1 20 A n 1 21 G n 1 22 U n 1 23 G n 1 24 A n 1 25 C n 1 26 G n 1 27 U n 1 28 G n 1 29 A n 1 30 A n 1 31 A n 1 32 U n 1 33 U n 1 34 C n 1 35 G n 1 36 U n 1 37 C n 1 38 C n 1 39 A n 1 40 C n 1 41 A n 1 42 C n 1 43 G n 1 44 A n 1 45 A n 1 46 A n 1 47 G n 1 48 U n 1 49 A n 1 50 A n 1 51 G n 1 52 G n 1 53 U n 1 54 C n 1 55 A n 1 56 U n 1 57 A n 1 58 G n 1 59 U n 1 60 C n 1 61 C n 1 62 G n 1 63 A n 1 64 A n 1 65 U n 1 66 G n 1 67 C n 1 68 C n 1 69 A n 1 70 C n 1 71 C n 1 72 U n 1 73 A n 1 74 C n 1 75 C n 1 76 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 76 _pdbx_entity_src_syn.organism_scientific 'marine metagenome' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 408172 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 A 4 4 4 A A A . n A 1 5 A 5 5 5 A A A . n A 1 6 A 6 6 6 A A A . n A 1 7 A 7 7 7 A A A . n A 1 8 G 8 8 8 G G A . n A 1 9 C 9 9 9 C C A . n A 1 10 A 10 10 10 A A A . n A 1 11 U 11 11 11 U U A . n A 1 12 A 12 12 12 A A A . n A 1 13 G 13 13 13 G G A . n A 1 14 U 14 14 14 U U A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 G 17 17 17 G G A . n A 1 18 A 18 18 18 A A A . n A 1 19 A 19 19 19 A A A . n A 1 20 A 20 20 20 A A A . n A 1 21 G 21 21 21 G G A . n A 1 22 U 22 22 22 U U A . n A 1 23 G 23 23 23 G G A . n A 1 24 A 24 24 24 A A A . n A 1 25 C 25 25 25 C C A . n A 1 26 G 26 26 26 G G A . n A 1 27 U 27 27 27 U U A . n A 1 28 G 28 28 28 G G A . n A 1 29 A 29 29 29 A A A . n A 1 30 A 30 30 30 A A A . n A 1 31 A 31 31 31 A A A . n A 1 32 U 32 32 32 U U A . n A 1 33 U 33 33 33 U U A . n A 1 34 C 34 34 34 C C A . n A 1 35 G 35 35 35 G G A . n A 1 36 U 36 36 36 U U A . n A 1 37 C 37 37 37 C C A . n A 1 38 C 38 38 38 C C A . n A 1 39 A 39 39 39 A A A . n A 1 40 C 40 40 40 C C A . n A 1 41 A 41 41 41 A A A . n A 1 42 C 42 42 42 C C A . n A 1 43 G 43 43 43 G G A . n A 1 44 A 44 44 44 A A A . n A 1 45 A 45 45 45 A A A . n A 1 46 A 46 46 46 A A A . n A 1 47 G 47 47 47 G G A . n A 1 48 U 48 48 48 U U A . n A 1 49 A 49 49 49 A A A . n A 1 50 A 50 50 50 A A A . n A 1 51 G 51 51 51 G G A . n A 1 52 G 52 52 52 G G A . n A 1 53 U 53 53 53 U U A . n A 1 54 C 54 54 54 C C A . n A 1 55 A 55 55 55 A A A . n A 1 56 U 56 56 56 U U A . n A 1 57 A 57 57 57 A A A . n A 1 58 G 58 58 58 G G A . n A 1 59 U 59 59 59 U U A . n A 1 60 C 60 60 60 C C A . n A 1 61 C 61 61 61 C C A . n A 1 62 G 62 62 62 G G A . n A 1 63 A 63 63 63 A A A . n A 1 64 A 64 64 64 A A A . n A 1 65 U 65 65 65 U U A . n A 1 66 G 66 66 66 G G A . n A 1 67 C 67 67 67 C C A . n A 1 68 C 68 68 68 C C A . n A 1 69 A 69 69 69 A A A . n A 1 70 C 70 70 70 C C A . n A 1 71 C 71 71 71 C C A . n A 1 72 U 72 72 72 U U A . n A 1 73 A 73 73 73 A A A . n A 1 74 C 74 74 74 C C A . n A 1 75 C 75 75 75 C C A . n A 1 76 A 76 76 76 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 1 MG MG A . C 2 MG 1 102 2 MG MG A . D 2 MG 1 103 3 MG MG A . E 2 MG 1 104 4 MG MG A . F 2 MG 1 105 5 MG MG A . G 2 MG 1 106 6 MG MG A . H 2 MG 1 107 7 MG MG A . I 2 MG 1 108 8 MG MG A . J 3 HOH 1 201 121 HOH HOH A . J 3 HOH 2 202 94 HOH HOH A . J 3 HOH 3 203 24 HOH HOH A . J 3 HOH 4 204 181 HOH HOH A . J 3 HOH 5 205 46 HOH HOH A . J 3 HOH 6 206 56 HOH HOH A . J 3 HOH 7 207 39 HOH HOH A . J 3 HOH 8 208 178 HOH HOH A . J 3 HOH 9 209 147 HOH HOH A . J 3 HOH 10 210 70 HOH HOH A . J 3 HOH 11 211 61 HOH HOH A . J 3 HOH 12 212 57 HOH HOH A . J 3 HOH 13 213 180 HOH HOH A . J 3 HOH 14 214 123 HOH HOH A . J 3 HOH 15 215 116 HOH HOH A . J 3 HOH 16 216 53 HOH HOH A . J 3 HOH 17 217 26 HOH HOH A . J 3 HOH 18 218 85 HOH HOH A . J 3 HOH 19 219 11 HOH HOH A . J 3 HOH 20 220 68 HOH HOH A . J 3 HOH 21 221 9 HOH HOH A . J 3 HOH 22 222 62 HOH HOH A . J 3 HOH 23 223 143 HOH HOH A . J 3 HOH 24 224 115 HOH HOH A . J 3 HOH 25 225 3 HOH HOH A . J 3 HOH 26 226 168 HOH HOH A . J 3 HOH 27 227 77 HOH HOH A . J 3 HOH 28 228 120 HOH HOH A . J 3 HOH 29 229 60 HOH HOH A . J 3 HOH 30 230 179 HOH HOH A . J 3 HOH 31 231 133 HOH HOH A . J 3 HOH 32 232 1 HOH HOH A . J 3 HOH 33 233 92 HOH HOH A . J 3 HOH 34 234 7 HOH HOH A . J 3 HOH 35 235 102 HOH HOH A . J 3 HOH 36 236 104 HOH HOH A . J 3 HOH 37 237 14 HOH HOH A . J 3 HOH 38 238 154 HOH HOH A . J 3 HOH 39 239 158 HOH HOH A . J 3 HOH 40 240 140 HOH HOH A . J 3 HOH 41 241 41 HOH HOH A . J 3 HOH 42 242 32 HOH HOH A . J 3 HOH 43 243 54 HOH HOH A . J 3 HOH 44 244 66 HOH HOH A . J 3 HOH 45 245 130 HOH HOH A . J 3 HOH 46 246 42 HOH HOH A . J 3 HOH 47 247 2 HOH HOH A . J 3 HOH 48 248 23 HOH HOH A . J 3 HOH 49 249 22 HOH HOH A . J 3 HOH 50 250 139 HOH HOH A . J 3 HOH 51 251 119 HOH HOH A . J 3 HOH 52 252 30 HOH HOH A . J 3 HOH 53 253 96 HOH HOH A . J 3 HOH 54 254 100 HOH HOH A . J 3 HOH 55 255 12 HOH HOH A . J 3 HOH 56 256 5 HOH HOH A . J 3 HOH 57 257 170 HOH HOH A . J 3 HOH 58 258 49 HOH HOH A . J 3 HOH 59 259 137 HOH HOH A . J 3 HOH 60 260 110 HOH HOH A . J 3 HOH 61 261 28 HOH HOH A . J 3 HOH 62 262 176 HOH HOH A . J 3 HOH 63 263 144 HOH HOH A . J 3 HOH 64 264 51 HOH HOH A . J 3 HOH 65 265 8 HOH HOH A . J 3 HOH 66 266 19 HOH HOH A . J 3 HOH 67 267 25 HOH HOH A . J 3 HOH 68 268 20 HOH HOH A . J 3 HOH 69 269 118 HOH HOH A . J 3 HOH 70 270 13 HOH HOH A . J 3 HOH 71 271 93 HOH HOH A . J 3 HOH 72 272 21 HOH HOH A . J 3 HOH 73 273 31 HOH HOH A . J 3 HOH 74 274 125 HOH HOH A . J 3 HOH 75 275 111 HOH HOH A . J 3 HOH 76 276 148 HOH HOH A . J 3 HOH 77 277 17 HOH HOH A . J 3 HOH 78 278 159 HOH HOH A . J 3 HOH 79 279 95 HOH HOH A . J 3 HOH 80 280 163 HOH HOH A . J 3 HOH 81 281 6 HOH HOH A . J 3 HOH 82 282 105 HOH HOH A . J 3 HOH 83 283 152 HOH HOH A . J 3 HOH 84 284 117 HOH HOH A . J 3 HOH 85 285 146 HOH HOH A . J 3 HOH 86 286 128 HOH HOH A . J 3 HOH 87 287 155 HOH HOH A . J 3 HOH 88 288 64 HOH HOH A . J 3 HOH 89 289 126 HOH HOH A . J 3 HOH 90 290 98 HOH HOH A . J 3 HOH 91 291 37 HOH HOH A . J 3 HOH 92 292 174 HOH HOH A . J 3 HOH 93 293 142 HOH HOH A . J 3 HOH 94 294 4 HOH HOH A . J 3 HOH 95 295 71 HOH HOH A . J 3 HOH 96 296 27 HOH HOH A . J 3 HOH 97 297 18 HOH HOH A . J 3 HOH 98 298 15 HOH HOH A . J 3 HOH 99 299 63 HOH HOH A . J 3 HOH 100 300 72 HOH HOH A . J 3 HOH 101 301 90 HOH HOH A . J 3 HOH 102 302 50 HOH HOH A . J 3 HOH 103 303 43 HOH HOH A . J 3 HOH 104 304 109 HOH HOH A . J 3 HOH 105 305 40 HOH HOH A . J 3 HOH 106 306 16 HOH HOH A . J 3 HOH 107 307 76 HOH HOH A . J 3 HOH 108 308 59 HOH HOH A . J 3 HOH 109 309 78 HOH HOH A . J 3 HOH 110 310 55 HOH HOH A . J 3 HOH 111 311 112 HOH HOH A . J 3 HOH 112 312 79 HOH HOH A . J 3 HOH 113 313 38 HOH HOH A . J 3 HOH 114 314 134 HOH HOH A . J 3 HOH 115 315 160 HOH HOH A . J 3 HOH 116 316 124 HOH HOH A . J 3 HOH 117 317 47 HOH HOH A . J 3 HOH 118 318 75 HOH HOH A . J 3 HOH 119 319 80 HOH HOH A . J 3 HOH 120 320 113 HOH HOH A . J 3 HOH 121 321 175 HOH HOH A . J 3 HOH 122 322 45 HOH HOH A . J 3 HOH 123 323 52 HOH HOH A . J 3 HOH 124 324 58 HOH HOH A . J 3 HOH 125 325 10 HOH HOH A . J 3 HOH 126 326 44 HOH HOH A . J 3 HOH 127 327 150 HOH HOH A . J 3 HOH 128 328 29 HOH HOH A . J 3 HOH 129 329 36 HOH HOH A . J 3 HOH 130 330 33 HOH HOH A . J 3 HOH 131 331 99 HOH HOH A . J 3 HOH 132 332 103 HOH HOH A . J 3 HOH 133 333 84 HOH HOH A . J 3 HOH 134 334 67 HOH HOH A . J 3 HOH 135 335 108 HOH HOH A . J 3 HOH 136 336 101 HOH HOH A . J 3 HOH 137 337 48 HOH HOH A . J 3 HOH 138 338 35 HOH HOH A . J 3 HOH 139 339 145 HOH HOH A . J 3 HOH 140 340 114 HOH HOH A . J 3 HOH 141 341 82 HOH HOH A . J 3 HOH 142 342 83 HOH HOH A . J 3 HOH 143 343 151 HOH HOH A . J 3 HOH 144 344 73 HOH HOH A . J 3 HOH 145 345 107 HOH HOH A . J 3 HOH 146 346 91 HOH HOH A . J 3 HOH 147 347 106 HOH HOH A . J 3 HOH 148 348 34 HOH HOH A . J 3 HOH 149 349 65 HOH HOH A . J 3 HOH 150 350 141 HOH HOH A . J 3 HOH 151 351 156 HOH HOH A . J 3 HOH 152 352 135 HOH HOH A . J 3 HOH 153 353 97 HOH HOH A . J 3 HOH 154 354 89 HOH HOH A . J 3 HOH 155 355 132 HOH HOH A . J 3 HOH 156 356 74 HOH HOH A . J 3 HOH 157 357 165 HOH HOH A . J 3 HOH 158 358 129 HOH HOH A . J 3 HOH 159 359 86 HOH HOH A . J 3 HOH 160 360 162 HOH HOH A . J 3 HOH 161 361 177 HOH HOH A . J 3 HOH 162 362 136 HOH HOH A . J 3 HOH 163 363 88 HOH HOH A . J 3 HOH 164 364 166 HOH HOH A . J 3 HOH 165 365 161 HOH HOH A . J 3 HOH 166 366 81 HOH HOH A . J 3 HOH 167 367 122 HOH HOH A . J 3 HOH 168 368 131 HOH HOH A . J 3 HOH 169 369 157 HOH HOH A . J 3 HOH 170 370 149 HOH HOH A . J 3 HOH 171 371 153 HOH HOH A . J 3 HOH 172 372 138 HOH HOH A . J 3 HOH 173 373 87 HOH HOH A . J 3 HOH 174 374 127 HOH HOH A . J 3 HOH 175 375 69 HOH HOH A . J 3 HOH 176 376 164 HOH HOH A . J 3 HOH 177 377 172 HOH HOH A . J 3 HOH 178 378 171 HOH HOH A . J 3 HOH 179 379 167 HOH HOH A . J 3 HOH 180 380 169 HOH HOH A . J 3 HOH 181 381 173 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 121.18 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9MFH _cell.details ? _cell.formula_units_Z ? _cell.length_a 109.326 _cell.length_a_esd ? _cell.length_b 39.320 _cell.length_b_esd ? _cell.length_c 64.189 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9MFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9MFH _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;10% (v/v) (+/-)-2-Methyl-2,4-pentanediol, 40 mM Sodium cacodylate trihydrate (pH 7.0), 12 mM Spermine tetrahydrochloride, 80 mM Potassium chloride, 20 mM Magnesium chloride hexahydrate. Hanging drop. 303.15 K ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 303.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 200K' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2024-12-06 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'SEALED TUBE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-003' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54178 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9MFH _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.50 _reflns.d_resolution_low 20.00 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7804 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.4 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.083 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.925 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 2.50 2.59 ? ? ? ? ? ? 581 ? ? ? ? ? ? ? ? ? ? ? 1.8 1.043 ? ? 0.334 0.212 ? 1 1 0.857 0.961 ? 70.9 ? 0.255 ? ? ? ? ? ? ? ? ? 2.59 2.69 ? ? ? ? ? ? 726 ? ? ? ? ? ? ? ? ? ? ? 2.1 1.000 ? ? 0.336 0.208 ? 2 1 0.840 0.956 ? 88.3 ? 0.261 ? ? ? ? ? ? ? ? ? 2.69 2.81 ? ? ? ? ? ? 785 ? ? ? ? ? ? ? ? ? ? ? 2.3 0.983 ? ? 0.274 0.166 ? 3 1 0.893 0.971 ? 95.8 ? 0.216 ? ? ? ? ? ? ? ? ? 2.81 2.96 ? ? ? ? ? ? 795 ? ? ? ? ? ? ? ? ? ? ? 2.4 1.239 ? ? 0.257 0.156 ? 4 1 0.897 0.973 ? 98.1 ? 0.202 ? ? ? ? ? ? ? ? ? 2.96 3.15 ? ? ? ? ? ? 802 ? ? ? ? ? ? ? ? ? ? ? 2.5 1.574 ? ? 0.204 0.124 ? 5 1 0.932 0.982 ? 98.5 ? 0.161 ? ? ? ? ? ? ? ? ? 3.15 3.39 ? ? ? ? ? ? 827 ? ? ? ? ? ? ? ? ? ? ? 2.5 1.816 ? ? 0.158 0.095 ? 6 1 0.950 0.987 ? 98.7 ? 0.125 ? ? ? ? ? ? ? ? ? 3.39 3.73 ? ? ? ? ? ? 812 ? ? ? ? ? ? ? ? ? ? ? 2.6 1.963 ? ? 0.139 0.083 ? 7 1 0.948 0.987 ? 99.1 ? 0.111 ? ? ? ? ? ? ? ? ? 3.73 4.26 ? ? ? ? ? ? 827 ? ? ? ? ? ? ? ? ? ? ? 2.5 2.012 ? ? 0.126 0.076 ? 8 1 0.960 0.990 ? 99.2 ? 0.100 ? ? ? ? ? ? ? ? ? 4.26 5.35 ? ? ? ? ? ? 828 ? ? ? ? ? ? ? ? ? ? ? 2.5 2.106 ? ? 0.103 0.063 ? 9 1 0.972 0.993 ? 98.1 ? 0.081 ? ? ? ? ? ? ? ? ? 5.35 20.00 ? ? ? ? ? ? 821 ? ? ? ? ? ? ? ? ? ? ? 2.4 2.000 ? ? 0.078 0.048 ? 10 1 0.996 0.999 ? 94.7 ? 0.061 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9MFH _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.70 _refine.ls_d_res_low 19.65 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6433 _refine.ls_number_reflns_R_free 645 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.74 _refine.ls_percent_reflns_R_free 10.03 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2474 _refine.ls_R_factor_R_free 0.2940 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2422 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 29.83 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.48 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 19.65 _refine_hist.number_atoms_solvent 181 _refine_hist.number_atoms_total 1820 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1631 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.002 ? 1828 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.637 ? 2848 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 14.570 ? 909 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.033 ? 380 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 76 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.70 2.91 . . 124 1132 97.00 . . . . 0.3308 . . . . . . . . . . . 0.4285 'X-RAY DIFFRACTION' 2.91 3.20 . . 136 1154 99.00 . . . . 0.2810 . . . . . . . . . . . 0.3591 'X-RAY DIFFRACTION' 3.20 3.66 . . 125 1161 99.00 . . . . 0.2191 . . . . . . . . . . . 0.2768 'X-RAY DIFFRACTION' 3.66 4.60 . . 128 1168 99.00 . . . . 0.2259 . . . . . . . . . . . 0.2483 'X-RAY DIFFRACTION' 4.60 19.65 . . 132 1173 96.00 . . . . 0.2241 . . . . . . . . . . . 0.2688 # _struct.entry_id 9MFH _struct.title 'env2 cobalamin riboswitch aptamer domain in the apo state' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9MFH _struct_keywords.text 'riboswitch, aptamer, vitamin B12, cobalamin, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9MFH _struct_ref.pdbx_db_accession 9MFH _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9MFH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 76 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9MFH _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 76 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 76 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 1 OP1 ? ? ? 1_555 H MG . MG ? ? A G 1 A MG 107 1_555 ? ? ? ? ? ? ? 2.841 ? ? metalc2 metalc ? ? A A 5 OP1 ? ? ? 1_555 B MG . MG ? ? A A 5 A MG 101 1_555 ? ? ? ? ? ? ? 2.409 ? ? metalc3 metalc ? ? A A 6 OP2 ? ? ? 1_555 B MG . MG ? ? A A 6 A MG 101 1_555 ? ? ? ? ? ? ? 2.098 ? ? metalc4 metalc ? ? A U 11 OP1 ? ? ? 1_555 F MG . MG ? ? A U 11 A MG 105 1_555 ? ? ? ? ? ? ? 2.227 ? ? metalc5 metalc ? ? A A 12 OP2 ? ? ? 1_555 F MG . MG ? ? A A 12 A MG 105 1_555 ? ? ? ? ? ? ? 1.821 ? ? metalc6 metalc ? ? A A 19 OP2 ? ? ? 1_555 I MG . MG ? ? A A 19 A MG 108 1_555 ? ? ? ? ? ? ? 2.758 ? ? metalc7 metalc ? ? A A 41 OP2 ? ? ? 1_555 G MG . MG ? ? A A 41 A MG 106 1_555 ? ? ? ? ? ? ? 2.379 ? ? metalc8 metalc ? ? A A 41 "O5'" ? ? ? 1_555 G MG . MG ? ? A A 41 A MG 106 1_555 ? ? ? ? ? ? ? 2.855 ? ? metalc9 metalc ? ? A C 42 OP2 ? ? ? 1_555 G MG . MG ? ? A C 42 A MG 106 1_555 ? ? ? ? ? ? ? 2.999 ? ? metalc10 metalc ? ? A A 49 OP1 ? ? ? 1_555 C MG . MG ? ? A A 49 A MG 102 1_555 ? ? ? ? ? ? ? 2.242 ? ? metalc11 metalc ? ? A G 58 OP2 ? ? ? 1_555 C MG . MG ? ? A G 58 A MG 102 1_555 ? ? ? ? ? ? ? 2.371 ? ? metalc12 metalc ? ? A G 62 O6 ? ? ? 1_555 E MG . MG ? ? A G 62 A MG 104 1_555 ? ? ? ? ? ? ? 2.884 ? ? metalc13 metalc ? ? B MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 101 A HOH 213 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc14 metalc ? ? B MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 101 A HOH 230 1_555 ? ? ? ? ? ? ? 2.455 ? ? metalc15 metalc ? ? B MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 101 A HOH 245 1_555 ? ? ? ? ? ? ? 2.454 ? ? metalc16 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 102 A HOH 250 1_555 ? ? ? ? ? ? ? 2.478 ? ? metalc17 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 102 A HOH 314 1_555 ? ? ? ? ? ? ? 2.356 ? ? metalc18 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 103 A HOH 217 1_555 ? ? ? ? ? ? ? 2.456 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 104 A HOH 298 1_555 ? ? ? ? ? ? ? 2.792 ? ? metalc20 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 105 A HOH 204 1_555 ? ? ? ? ? ? ? 2.027 ? ? metalc21 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 105 A HOH 265 1_555 ? ? ? ? ? ? ? 2.099 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 75 N3 ? ? A G 1 A C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 75 O2 ? ? A G 1 A C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 75 N4 ? ? A G 1 A C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 74 N3 ? ? A G 2 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 74 O2 ? ? A G 2 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 74 N4 ? ? A G 2 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 73 N1 ? ? A U 3 A A 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 73 N6 ? ? A U 3 A A 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 72 N3 ? ? A A 4 A U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 72 O4 ? ? A A 4 A U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 11 N3 ? ? A A 7 A U 11 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog12 hydrog ? ? A G 8 N2 ? ? ? 1_555 A U 65 O2 ? ? A G 8 A U 65 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog13 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 66 N1 ? ? A C 9 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 66 O6 ? ? A C 9 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 66 N2 ? ? A C 9 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 12 N6 ? ? ? 1_555 A C 71 O2 ? ? A A 12 A C 71 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog17 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 70 N3 ? ? A G 13 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 70 O2 ? ? A G 13 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 70 N4 ? ? A G 13 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 69 N1 ? ? A U 14 A A 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 69 N6 ? ? A U 14 A A 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 15 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 15 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 15 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 16 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 16 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 16 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 20 N3 ? ? ? 1_555 A G 58 N2 ? ? A A 20 A G 58 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog29 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 23 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 23 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 23 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 24 N1 ? ? ? 1_555 A U 36 N3 ? ? A A 24 A U 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 24 N6 ? ? ? 1_555 A U 36 O4 ? ? A A 24 A U 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 25 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 25 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 25 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 26 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 34 O2 ? ? A G 26 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 34 N4 ? ? A G 26 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 27 N3 ? ? ? 1_555 A A 31 N7 ? ? A U 27 A A 31 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog44 hydrog ? ? A U 27 O2 ? ? ? 1_555 A A 31 N6 ? ? A U 27 A A 31 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog45 hydrog ? ? A G 28 N2 ? ? ? 1_555 A A 55 N7 ? ? A G 28 A A 55 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog46 hydrog ? ? A G 28 N3 ? ? ? 1_555 A A 55 N6 ? ? A G 28 A A 55 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog47 hydrog ? ? A A 39 N1 ? ? ? 1_555 A U 59 N3 ? ? A A 39 A U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 39 N6 ? ? ? 1_555 A U 59 O4 ? ? A A 39 A U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 40 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 40 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 40 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A A 41 N1 ? ? ? 1_555 A U 48 N3 ? ? A A 41 A U 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A A 41 N6 ? ? ? 1_555 A U 48 O4 ? ? A A 41 A U 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 47 N1 ? ? A C 42 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 47 O6 ? ? A C 42 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 47 N2 ? ? A C 42 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 43 N2 ? ? ? 1_555 A A 46 N7 ? ? A G 43 A A 46 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog58 hydrog ? ? A A 50 N1 ? ? ? 1_555 A G 62 N1 ? ? A A 50 A G 62 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog59 hydrog ? ? A A 50 N6 ? ? ? 1_555 A G 62 O6 ? ? A A 50 A G 62 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog60 hydrog ? ? A G 51 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 51 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 51 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 51 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 51 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 51 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 52 N1 ? ? ? 1_555 A C 60 N3 ? ? A G 52 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 52 N2 ? ? ? 1_555 A C 60 O2 ? ? A G 52 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 52 O6 ? ? ? 1_555 A C 60 N4 ? ? A G 52 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A U 53 N3 ? ? ? 1_555 A A 57 N7 ? ? A U 53 A A 57 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog67 hydrog ? ? A U 53 O2 ? ? ? 1_555 A A 57 N6 ? ? A U 53 A A 57 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A A 5 ? A A 5 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 OP2 ? A A 6 ? A A 6 ? 1_555 92.8 ? 2 OP1 ? A A 5 ? A A 5 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? J HOH . ? A HOH 213 ? 1_555 101.2 ? 3 OP2 ? A A 6 ? A A 6 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? J HOH . ? A HOH 213 ? 1_555 123.7 ? 4 OP1 ? A A 5 ? A A 5 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? J HOH . ? A HOH 230 ? 1_555 87.3 ? 5 OP2 ? A A 6 ? A A 6 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? J HOH . ? A HOH 230 ? 1_555 168.7 ? 6 O ? J HOH . ? A HOH 213 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? J HOH . ? A HOH 230 ? 1_555 67.3 ? 7 OP1 ? A A 5 ? A A 5 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? J HOH . ? A HOH 245 ? 1_555 79.9 ? 8 OP2 ? A A 6 ? A A 6 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? J HOH . ? A HOH 245 ? 1_555 84.3 ? 9 O ? J HOH . ? A HOH 213 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? J HOH . ? A HOH 245 ? 1_555 151.6 ? 10 O ? J HOH . ? A HOH 230 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? J HOH . ? A HOH 245 ? 1_555 84.6 ? 11 OP1 ? A U 11 ? A U 11 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 OP2 ? A A 12 ? A A 12 ? 1_555 85.1 ? 12 OP1 ? A U 11 ? A U 11 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? J HOH . ? A HOH 204 ? 1_555 61.3 ? 13 OP2 ? A A 12 ? A A 12 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? J HOH . ? A HOH 204 ? 1_555 107.5 ? 14 OP1 ? A U 11 ? A U 11 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? J HOH . ? A HOH 265 ? 1_555 108.5 ? 15 OP2 ? A A 12 ? A A 12 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? J HOH . ? A HOH 265 ? 1_555 109.3 ? 16 O ? J HOH . ? A HOH 204 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? J HOH . ? A HOH 265 ? 1_555 140.6 ? 17 OP2 ? A A 41 ? A A 41 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 "O5'" ? A A 41 ? A A 41 ? 1_555 55.8 ? 18 OP2 ? A A 41 ? A A 41 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 OP2 ? A C 42 ? A C 42 ? 1_555 120.4 ? 19 "O5'" ? A A 41 ? A A 41 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 OP2 ? A C 42 ? A C 42 ? 1_555 79.5 ? 20 OP1 ? A A 49 ? A A 49 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 OP2 ? A G 58 ? A G 58 ? 1_555 75.8 ? 21 OP1 ? A A 49 ? A A 49 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 250 ? 1_555 78.2 ? 22 OP2 ? A G 58 ? A G 58 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 250 ? 1_555 66.1 ? 23 OP1 ? A A 49 ? A A 49 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 314 ? 1_555 156.4 ? 24 OP2 ? A G 58 ? A G 58 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 314 ? 1_555 95.0 ? 25 O ? J HOH . ? A HOH 250 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? J HOH . ? A HOH 314 ? 1_555 118.4 ? 26 O6 ? A G 62 ? A G 62 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? J HOH . ? A HOH 298 ? 1_555 157.6 ? # _pdbx_entry_details.entry_id 9MFH _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N3 A C 68 ? ? O A HOH 201 ? ? 2.00 2 1 N1 A G 15 ? ? O A HOH 201 ? ? 2.03 3 1 OP2 A A 7 ? ? O A HOH 202 ? ? 2.05 4 1 O A HOH 209 ? ? O A HOH 343 ? ? 2.14 5 1 OP2 A G 21 ? ? O A HOH 203 ? ? 2.17 6 1 OP1 A U 11 ? ? O A HOH 204 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O2'" _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 C _pdbx_validate_symm_contact.auth_seq_id_1 54 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 C _pdbx_validate_symm_contact.auth_seq_id_2 54 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 2.17 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 291 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id J _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 375 ? 6.34 . 2 1 O ? A HOH 376 ? 6.56 . 3 1 O ? A HOH 377 ? 6.74 . 4 1 O ? A HOH 378 ? 7.81 . 5 1 O ? A HOH 379 ? 7.91 . 6 1 O ? A HOH 380 ? 9.66 . 7 1 O ? A HOH 381 ? 9.74 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 U OP3 O N N 115 U P P N N 116 U OP1 O N N 117 U OP2 O N N 118 U "O5'" O N N 119 U "C5'" C N N 120 U "C4'" C N R 121 U "O4'" O N N 122 U "C3'" C N S 123 U "O3'" O N N 124 U "C2'" C N R 125 U "O2'" O N N 126 U "C1'" C N R 127 U N1 N N N 128 U C2 C N N 129 U O2 O N N 130 U N3 N N N 131 U C4 C N N 132 U O4 O N N 133 U C5 C N N 134 U C6 C N N 135 U HOP3 H N N 136 U HOP2 H N N 137 U "H5'" H N N 138 U "H5''" H N N 139 U "H4'" H N N 140 U "H3'" H N N 141 U "HO3'" H N N 142 U "H2'" H N N 143 U "HO2'" H N N 144 U "H1'" H N N 145 U H3 H N N 146 U H5 H N N 147 U H6 H N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9MFH 'double helix' 9MFH 'a-form double helix' 9MFH 'parallel strands' 9MFH 'hairpin loop' 9MFH tetraloop 9MFH 'bulge loop' 9MFH 'mismatched base pair' 9MFH 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 75 1_555 -0.169 -0.144 0.072 -5.349 2.572 -0.043 1 A_G1:C75_A A 1 ? A 75 ? 19 1 1 A G 2 1_555 A C 74 1_555 -0.158 -0.151 0.202 0.645 -1.105 -0.705 2 A_G2:C74_A A 2 ? A 74 ? 19 1 1 A U 3 1_555 A A 73 1_555 -0.005 -0.143 0.465 -0.827 -3.032 1.824 3 A_U3:A73_A A 3 ? A 73 ? 20 1 1 A A 4 1_555 A U 72 1_555 0.032 -0.064 -0.029 -2.597 -2.667 4.891 4 A_A4:U72_A A 4 ? A 72 ? 20 1 1 A A 12 1_555 A C 71 1_555 -4.220 -0.922 -0.478 -5.137 0.875 -16.409 5 A_A12:C71_A A 12 ? A 71 ? ? 1 1 A G 13 1_555 A C 70 1_555 -0.174 -0.135 -0.260 -2.019 4.473 -0.951 6 A_G13:C70_A A 13 ? A 70 ? 19 1 1 A U 14 1_555 A A 69 1_555 -0.005 -0.068 0.017 3.359 3.366 -0.855 7 A_U14:A69_A A 14 ? A 69 ? 20 1 1 A G 15 1_555 A C 68 1_555 -0.209 0.133 0.115 4.469 -3.092 3.142 8 A_G15:C68_A A 15 ? A 68 ? 19 1 1 A G 16 1_555 A C 67 1_555 -0.150 -0.107 0.079 -5.915 -3.973 0.641 9 A_G16:C67_A A 16 ? A 67 ? 19 1 1 A A 7 1_555 A U 11 1_555 0.141 -0.488 0.038 21.463 -3.662 -167.638 10 A_A7:U11_A A 7 ? A 11 ? ? 2 1 A G 8 1_555 A U 65 1_555 -0.685 -6.245 0.138 15.631 -16.002 -133.656 11 A_G8:U65_A A 8 ? A 65 ? ? ? 1 A C 9 1_555 A G 66 1_555 0.210 -0.153 0.277 19.835 6.427 5.746 12 A_C9:G66_A A 9 ? A 66 ? 19 1 1 A A 46 1_555 A G 43 1_555 -7.072 -5.131 0.817 -17.893 2.152 -20.907 13 A_A46:G43_A A 46 ? A 43 ? ? ? 1 A G 47 1_555 A C 42 1_555 -0.201 -0.149 0.147 4.574 8.645 0.660 14 A_G47:C42_A A 47 ? A 42 ? 19 1 1 A U 48 1_555 A A 41 1_555 -0.055 -0.050 -0.032 10.866 2.784 -1.071 15 A_U48:A41_A A 48 ? A 41 ? 20 1 1 A G 58 1_555 A C 40 1_555 -0.067 -0.114 -0.160 -1.620 5.403 -1.325 16 A_G58:C40_A A 58 ? A 40 ? 19 1 1 A U 59 1_555 A A 39 1_555 -0.118 -0.065 -0.479 7.451 5.344 -0.709 17 A_U59:A39_A A 59 ? A 39 ? 20 1 1 A G 21 1_555 A C 38 1_555 -0.148 -0.092 -0.165 -11.859 -4.843 0.194 18 A_G21:C38_A A 21 ? A 38 ? 19 1 1 A G 23 1_555 A C 37 1_555 -0.179 -0.114 -0.059 -4.860 1.968 -1.735 19 A_G23:C37_A A 23 ? A 37 ? 19 1 1 A A 24 1_555 A U 36 1_555 0.054 -0.115 0.227 0.630 3.581 -0.121 20 A_A24:U36_A A 24 ? A 36 ? 20 1 1 A C 25 1_555 A G 35 1_555 0.187 -0.138 0.088 -0.615 -2.174 0.413 21 A_C25:G35_A A 25 ? A 35 ? 19 1 1 A G 26 1_555 A C 34 1_555 -0.180 -0.118 0.117 -9.533 -7.374 -2.139 22 A_G26:C34_A A 26 ? A 34 ? 19 1 1 A U 27 1_555 A A 31 1_555 4.164 -1.914 0.471 3.783 5.774 -90.744 23 A_U27:A31_A A 27 ? A 31 ? 24 4 1 A G 28 1_555 A A 55 1_555 6.554 -4.427 0.275 13.645 13.749 -1.226 24 A_G28:A55_A A 28 ? A 55 ? 11 10 1 A A 50 1_555 A G 62 1_555 -0.053 1.541 -0.435 18.743 -9.304 -4.128 25 A_A50:G62_A A 50 ? A 62 ? 8 1 1 A G 51 1_555 A C 61 1_555 -0.179 -0.139 0.153 -1.352 -8.635 -0.571 26 A_G51:C61_A A 51 ? A 61 ? 19 1 1 A G 52 1_555 A C 60 1_555 -0.185 -0.130 0.282 -4.792 -4.909 -0.967 27 A_G52:C60_A A 52 ? A 60 ? 19 1 1 A U 53 1_555 A A 57 1_555 4.469 -2.478 -0.200 3.387 0.615 -87.693 28 A_U53:A57_A A 53 ? A 57 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 75 1_555 A G 2 1_555 A C 74 1_555 -0.585 -1.286 3.057 -3.363 6.416 34.814 -2.959 0.513 2.826 10.582 5.547 35.537 1 AA_G1G2:C74C75_AA A 1 ? A 75 ? A 2 ? A 74 ? 1 A G 2 1_555 A C 74 1_555 A U 3 1_555 A A 73 1_555 0.392 -1.402 3.267 -1.991 6.655 34.125 -3.313 -0.945 2.923 11.196 3.350 34.804 2 AA_G2U3:A73C74_AA A 2 ? A 74 ? A 3 ? A 73 ? 1 A U 3 1_555 A A 73 1_555 A A 4 1_555 A U 72 1_555 0.846 -1.660 3.036 6.270 12.741 33.585 -4.192 -0.599 2.387 20.927 -10.299 36.384 3 AA_U3A4:U72A73_AA A 3 ? A 73 ? A 4 ? A 72 ? 1 A A 4 1_555 A U 72 1_555 A A 12 1_555 A C 71 1_555 0.992 -3.350 3.411 -0.381 7.591 -8.310 0.857 4.245 4.809 -42.461 -2.130 -11.257 4 AA_A4A12:C71U72_AA A 4 ? A 72 ? A 12 ? A 71 ? 1 A A 12 1_555 A C 71 1_555 A G 13 1_555 A C 70 1_555 0.765 -1.627 3.227 -4.728 3.905 45.563 -2.406 -1.370 2.996 5.015 6.073 45.952 5 AA_A12G13:C70C71_AA A 12 ? A 71 ? A 13 ? A 70 ? 1 A G 13 1_555 A C 70 1_555 A U 14 1_555 A A 69 1_555 0.152 -1.880 3.125 -1.475 3.947 35.938 -3.540 -0.437 2.901 6.369 2.381 36.176 6 AA_G13U14:A69C70_AA A 13 ? A 70 ? A 14 ? A 69 ? 1 A U 14 1_555 A A 69 1_555 A G 15 1_555 A C 68 1_555 0.628 -1.617 2.775 1.842 18.225 30.535 -4.590 -0.834 1.619 31.319 -3.165 35.496 7 AA_U14G15:C68A69_AA A 14 ? A 69 ? A 15 ? A 68 ? 1 A G 15 1_555 A C 68 1_555 A G 16 1_555 A C 67 1_555 0.444 -1.993 3.832 2.176 -0.642 31.030 -3.571 -0.337 3.893 -1.198 -4.061 31.110 8 AA_G15G16:C67C68_AA A 15 ? A 68 ? A 16 ? A 67 ? 1 A A 7 1_555 A U 11 1_555 A G 8 1_555 A U 65 1_555 -0.438 0.207 3.019 5.285 -5.167 24.840 1.757 2.300 2.769 -11.685 -11.952 25.900 9 AA_A7G8:U65U11_AA A 7 ? A 11 ? A 8 ? A 65 ? 1 A A 46 1_555 A G 43 1_555 A G 47 1_555 A C 42 1_555 1.551 -0.922 2.709 3.351 5.717 56.954 -1.220 -1.466 2.692 5.973 -3.501 57.306 10 AA_A46G47:C42G43_AA A 46 ? A 43 ? A 47 ? A 42 ? 1 A G 47 1_555 A C 42 1_555 A U 48 1_555 A A 41 1_555 0.107 -1.434 3.371 3.792 6.733 31.592 -3.727 0.464 3.002 12.140 -6.838 32.500 11 AA_G47U48:A41C42_AA A 47 ? A 42 ? A 48 ? A 41 ? 1 A U 48 1_555 A A 41 1_555 A G 58 1_555 A C 40 1_555 2.052 -3.240 3.267 0.559 8.452 17.603 -12.808 -5.837 1.615 25.769 -1.703 19.520 12 AA_U48G58:C40A41_AA A 48 ? A 41 ? A 58 ? A 40 ? 1 A G 58 1_555 A C 40 1_555 A U 59 1_555 A A 39 1_555 -0.555 -2.289 3.065 3.326 8.238 31.492 -5.268 1.471 2.338 14.813 -5.981 32.691 13 AA_G58U59:A39C40_AA A 58 ? A 40 ? A 59 ? A 39 ? 1 A U 59 1_555 A A 39 1_555 A G 21 1_555 A C 38 1_555 -0.542 -2.169 3.504 -2.243 10.366 37.374 -4.520 0.545 2.851 15.791 3.417 38.798 14 AA_U59G21:C38A39_AA A 59 ? A 39 ? A 21 ? A 38 ? 1 A G 21 1_555 A C 38 1_555 A G 23 1_555 A C 37 1_555 -0.168 -2.572 3.083 -1.882 6.999 21.774 -8.509 -0.126 2.167 17.901 4.813 22.935 15 AA_G21G23:C37C38_AA A 21 ? A 38 ? A 23 ? A 37 ? 1 A G 23 1_555 A C 37 1_555 A A 24 1_555 A U 36 1_555 -0.211 -1.687 2.907 -4.898 7.260 35.723 -3.511 -0.229 2.533 11.621 7.840 36.747 16 AA_G23A24:U36C37_AA A 23 ? A 37 ? A 24 ? A 36 ? 1 A A 24 1_555 A U 36 1_555 A C 25 1_555 A G 35 1_555 0.063 -1.526 3.211 1.933 6.207 34.360 -3.424 0.170 2.898 10.391 -3.236 34.951 17 AA_A24C25:G35U36_AA A 24 ? A 36 ? A 25 ? A 35 ? 1 A C 25 1_555 A G 35 1_555 A G 26 1_555 A C 34 1_555 0.372 -1.876 3.061 4.064 12.807 35.088 -4.339 -0.127 2.289 20.344 -6.456 37.497 18 AA_C25G26:C34G35_AA A 25 ? A 35 ? A 26 ? A 34 ? 1 A G 26 1_555 A C 34 1_555 A U 27 1_555 A A 31 1_555 -2.833 -1.279 3.198 -1.485 -1.616 74.150 -1.011 2.303 3.270 -1.340 1.231 74.178 19 AA_G26U27:A31C34_AA A 26 ? A 34 ? A 27 ? A 31 ? 1 A U 27 1_555 A A 31 1_555 A G 28 1_555 A A 55 1_555 1.662 -0.131 3.173 3.552 -1.017 -0.676 9.485 51.492 -1.036 21.917 76.551 -3.756 20 AA_U27G28:A55A31_AA A 27 ? A 31 ? A 28 ? A 55 ? 1 A A 50 1_555 A G 62 1_555 A G 51 1_555 A C 61 1_555 -1.065 -2.699 3.248 -15.907 17.395 31.445 -5.865 -0.087 1.881 27.744 25.371 39.120 21 AA_A50G51:C61G62_AA A 50 ? A 62 ? A 51 ? A 61 ? 1 A G 51 1_555 A C 61 1_555 A G 52 1_555 A C 60 1_555 0.422 -2.138 3.163 3.008 0.779 37.535 -3.409 -0.277 3.142 1.207 -4.666 37.659 22 AA_G51G52:C60C61_AA A 51 ? A 61 ? A 52 ? A 60 ? 1 A G 52 1_555 A C 60 1_555 A U 53 1_555 A A 57 1_555 -1.303 -1.487 3.292 4.999 -3.751 86.127 -1.003 1.065 3.278 -2.744 -3.657 86.310 23 AA_G52U53:A57C60_AA A 52 ? A 60 ? A 53 ? A 57 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'R35 GM152029' _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4FRG _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9MFH _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.009147 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005536 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025432 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018210 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P # loop_ #