HEADER TRANSFERASE 11-DEC-24 9MGT TITLE STRUCTURE OF N-3 AMINOGLYCOSIDE ACETYLTRANSFERASE XIA (AAC(3)-XIA) IN TITLE 2 COMPLEX WITH COENZYME A AND TOBRAMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOGLYCOSIDE N-ACETYLTRANSFERASE AAC(3)-XI; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM STRIATUM; SOURCE 3 ORGANISM_TAXID: 43770; SOURCE 4 GENE: CBE89_03745; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIBIOTIC RESISTANCE, AMINOGLYCOSIDES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ZIELINSKI,M.HEMMINGS,T.GOLKAR,J.BLANCHET,A.M.BERGHUIS REVDAT 2 17-SEP-25 9MGT 1 JRNL REVDAT 1 03-SEP-25 9MGT 0 JRNL AUTH M.HEMMINGS,M.ZIELINSKI,T.GOLKAR,J.BLANCHET,A.PISTOFIDIS, JRNL AUTH 2 K.MUNRO,T.M.SCHMEING,D.S.BOHLE,A.M.BERGHUIS JRNL TITL ENZYME-MEDIATED AMINOGLYCOSIDE RESISTANCE WITHOUT TARGET JRNL TITL 2 MIMICRY. JRNL REF COMMUN CHEM V. 8 258 2025 JRNL REFN ESSN 2399-3669 JRNL PMID 40855189 JRNL DOI 10.1038/S42004-025-01666-0 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 19127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.640 REMARK 3 FREE R VALUE TEST SET COUNT : 1270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0700 - 4.0800 1.00 2028 146 0.1504 0.1774 REMARK 3 2 4.0700 - 3.2400 1.00 1998 141 0.1293 0.1539 REMARK 3 3 3.2300 - 2.8300 1.00 1978 142 0.1446 0.1972 REMARK 3 4 2.8300 - 2.5700 0.99 2010 142 0.1498 0.2015 REMARK 3 5 2.5700 - 2.3800 0.99 1973 140 0.1431 0.1982 REMARK 3 6 2.3800 - 2.2400 0.99 1987 143 0.1381 0.2052 REMARK 3 7 2.2400 - 2.1300 0.99 1965 141 0.1357 0.2029 REMARK 3 8 2.1300 - 2.0400 0.99 1979 137 0.1483 0.2052 REMARK 3 9 2.0400 - 1.9600 0.98 1939 138 0.1592 0.2065 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.165 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.469 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2495 REMARK 3 ANGLE : 1.132 3424 REMARK 3 CHIRALITY : 0.048 386 REMARK 3 PLANARITY : 0.008 430 REMARK 3 DIHEDRAL : 11.947 362 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3491 66.7895 25.1940 REMARK 3 T TENSOR REMARK 3 T11: 0.2017 T22: 0.1512 REMARK 3 T33: 0.2177 T12: 0.0316 REMARK 3 T13: 0.0104 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 2.4457 L22: 2.3618 REMARK 3 L33: 4.6239 L12: -1.4647 REMARK 3 L13: -1.7503 L23: -0.9440 REMARK 3 S TENSOR REMARK 3 S11: 0.2714 S12: 0.3689 S13: 0.2606 REMARK 3 S21: -0.0932 S22: 0.0515 S23: 0.1038 REMARK 3 S31: -0.2671 S32: -0.6090 S33: -0.2690 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4725 63.8482 35.4218 REMARK 3 T TENSOR REMARK 3 T11: 0.1928 T22: 0.0896 REMARK 3 T33: 0.2209 T12: 0.0080 REMARK 3 T13: 0.0365 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 3.9887 L22: 4.6432 REMARK 3 L33: 5.7137 L12: 1.6385 REMARK 3 L13: 0.5111 L23: 0.2313 REMARK 3 S TENSOR REMARK 3 S11: 0.2940 S12: -0.2970 S13: 0.3237 REMARK 3 S21: 0.3743 S22: 0.1490 S23: 0.1359 REMARK 3 S31: -0.3451 S32: -0.1935 S33: -0.3591 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1112 54.8306 31.9598 REMARK 3 T TENSOR REMARK 3 T11: 0.0548 T22: 0.0728 REMARK 3 T33: 0.0801 T12: -0.0283 REMARK 3 T13: -0.0008 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 1.4487 L22: 6.4946 REMARK 3 L33: 2.4470 L12: -0.4981 REMARK 3 L13: -0.2588 L23: -1.7381 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.0454 S13: 0.0868 REMARK 3 S21: 0.3303 S22: 0.0141 S23: 0.1431 REMARK 3 S31: -0.2249 S32: -0.0279 S33: -0.0321 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1481 60.2509 23.5207 REMARK 3 T TENSOR REMARK 3 T11: 0.1138 T22: 0.0518 REMARK 3 T33: 0.0994 T12: -0.0002 REMARK 3 T13: 0.0119 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.0940 L22: 4.1940 REMARK 3 L33: 3.8102 L12: -0.1545 REMARK 3 L13: 0.2122 L23: -2.3594 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: 0.1143 S13: 0.2605 REMARK 3 S21: -0.0077 S22: -0.0223 S23: -0.1534 REMARK 3 S31: -0.3306 S32: -0.0050 S33: 0.0352 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3483 51.5682 18.0229 REMARK 3 T TENSOR REMARK 3 T11: 0.0998 T22: 0.1104 REMARK 3 T33: 0.1495 T12: 0.0076 REMARK 3 T13: -0.0119 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 2.9958 L22: 1.7784 REMARK 3 L33: 3.6712 L12: 0.4381 REMARK 3 L13: 1.5262 L23: 0.1651 REMARK 3 S TENSOR REMARK 3 S11: -0.0772 S12: 0.3222 S13: 0.1831 REMARK 3 S21: -0.3023 S22: 0.1108 S23: 0.0669 REMARK 3 S31: -0.1739 S32: -0.1184 S33: -0.0558 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5930 42.5598 19.3175 REMARK 3 T TENSOR REMARK 3 T11: 0.0846 T22: 0.1283 REMARK 3 T33: 0.0522 T12: -0.0046 REMARK 3 T13: -0.0200 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 4.9026 L22: 0.1261 REMARK 3 L33: 1.5945 L12: 0.4897 REMARK 3 L13: -2.3640 L23: -0.3723 REMARK 3 S TENSOR REMARK 3 S11: -0.0436 S12: 0.1166 S13: 0.0393 REMARK 3 S21: 0.0236 S22: -0.0135 S23: -0.0227 REMARK 3 S31: 0.1508 S32: -0.0258 S33: 0.0417 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9095 31.5697 38.1581 REMARK 3 T TENSOR REMARK 3 T11: 0.1277 T22: 0.1074 REMARK 3 T33: 0.1671 T12: 0.0257 REMARK 3 T13: 0.0001 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 1.5028 L22: 2.5072 REMARK 3 L33: 3.3254 L12: -0.2150 REMARK 3 L13: -0.0730 L23: 1.1469 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: 0.0888 S13: -0.4353 REMARK 3 S21: 0.0406 S22: 0.0680 S23: -0.1612 REMARK 3 S31: 0.2762 S32: 0.2800 S33: -0.0475 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3167 36.6970 40.5646 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.0886 REMARK 3 T33: 0.0972 T12: -0.0082 REMARK 3 T13: -0.0005 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 4.8583 L22: 2.3251 REMARK 3 L33: 4.2405 L12: -0.1713 REMARK 3 L13: -0.1607 L23: -0.5492 REMARK 3 S TENSOR REMARK 3 S11: 0.0516 S12: -0.2406 S13: 0.0328 REMARK 3 S21: 0.5952 S22: 0.0286 S23: -0.2152 REMARK 3 S31: 0.0723 S32: -0.0249 S33: -0.0853 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7579 40.1242 31.8769 REMARK 3 T TENSOR REMARK 3 T11: 0.0746 T22: 0.0885 REMARK 3 T33: 0.0415 T12: -0.0246 REMARK 3 T13: -0.0081 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 2.1890 L22: 3.9634 REMARK 3 L33: 1.4517 L12: -0.2767 REMARK 3 L13: -0.1023 L23: 0.0605 REMARK 3 S TENSOR REMARK 3 S11: -0.0975 S12: 0.0714 S13: -0.0081 REMARK 3 S21: 0.0681 S22: 0.0911 S23: 0.1294 REMARK 3 S31: 0.1403 S32: -0.0991 S33: -0.0287 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0343 36.5552 18.8502 REMARK 3 T TENSOR REMARK 3 T11: 0.0934 T22: 0.2371 REMARK 3 T33: 0.0896 T12: -0.0654 REMARK 3 T13: -0.0205 T23: -0.0748 REMARK 3 L TENSOR REMARK 3 L11: 2.4200 L22: 0.3708 REMARK 3 L33: 2.9440 L12: 0.0110 REMARK 3 L13: 0.1974 L23: -0.1827 REMARK 3 S TENSOR REMARK 3 S11: -0.1709 S12: 0.3153 S13: -0.1944 REMARK 3 S21: -0.0809 S22: -0.0920 S23: 0.0704 REMARK 3 S31: 0.4538 S32: -0.3526 S33: -0.0795 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8232 46.4794 18.4226 REMARK 3 T TENSOR REMARK 3 T11: 0.1001 T22: 0.1093 REMARK 3 T33: 0.0748 T12: 0.0007 REMARK 3 T13: 0.0277 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 5.5252 L22: 3.1812 REMARK 3 L33: 5.0338 L12: 2.5179 REMARK 3 L13: 2.2925 L23: 1.6112 REMARK 3 S TENSOR REMARK 3 S11: -0.0970 S12: 0.0805 S13: 0.1406 REMARK 3 S21: -0.0973 S22: 0.0847 S23: 0.2267 REMARK 3 S31: -0.0081 S32: -0.3866 S33: -0.0552 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9MGT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1000289205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : LIQUID ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER METALJET REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19238 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 32.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 18.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 4.6, 10-45% REMARK 280 (V/V) 2-METHYL-2,4-PENTANEDIOL, 0-20% (V/V) PEG 400, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.79900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 ASN A 5 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 465 ASN B 5 REMARK 465 GLU B 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 30 CG OD1 OD2 REMARK 470 THR A 31 OG1 CG2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 GLN A 43 CG CD OE1 NE2 REMARK 470 HIS A 47 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 49 CG OD1 OD2 REMARK 470 GLN A 98 CG CD OE1 NE2 REMARK 470 ARG A 129 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 136 CG CD OE1 OE2 REMARK 470 GLN B 137 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 111 HE21 GLN A 113 1.55 REMARK 500 HZ2 LYS A 20 O HOH A 304 1.56 REMARK 500 O HOH A 307 O HOH A 319 1.95 REMARK 500 O HOH A 389 O HOH A 408 1.96 REMARK 500 O ASP A 48 O HOH A 301 1.96 REMARK 500 O HOH A 305 O HOH A 402 2.00 REMARK 500 O HOH B 301 O HOH B 409 2.02 REMARK 500 O HOH B 385 O HOH B 438 2.03 REMARK 500 O HOH A 331 O HOH A 387 2.05 REMARK 500 O TYR B 71 O HOH B 301 2.05 REMARK 500 O HOH B 412 O HOH B 447 2.07 REMARK 500 O HOH A 303 O HOH A 363 2.07 REMARK 500 O HOH B 309 O HOH B 395 2.10 REMARK 500 O HOH B 422 O HOH B 428 2.13 REMARK 500 O HOH A 385 O HOH A 416 2.16 REMARK 500 O GLU A 6 O HOH A 302 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 322 O HOH B 414 1554 1.86 REMARK 500 O HOH A 410 O HOH B 338 1655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 111 147.82 -170.09 REMARK 500 REMARK 500 REMARK: NULL DBREF1 9MGT A 1 148 UNP A0A0K2X0F2_CORST DBREF2 9MGT A A0A0K2X0F2 1 148 DBREF1 9MGT B 1 148 UNP A0A0K2X0F2_CORST DBREF2 9MGT B A0A0K2X0F2 1 148 SEQRES 1 A 148 MET THR THR THR ASN GLU ILE ARG VAL ALA GLU VAL ALA SEQRES 2 A 148 ASP ALA GLY VAL VAL ALA LYS LEU LEU ARG ASP PHE ASN SEQRES 3 A 148 THR GLU PHE ASP THR PRO VAL PRO GLU GLY LEU GLU GLU SEQRES 4 A 148 ARG PHE ALA GLN ILE ILE ALA HIS ASP ASP ALA PHE VAL SEQRES 5 A 148 LEU LEU ALA GLY ASP ILE GLY PHE ALA TYR VAL THR LEU SEQRES 6 A 148 ARG PRO SER PRO TYR TYR ASP GLY PRO VAL ALA MET LEU SEQRES 7 A 148 ASP GLU LEU TYR VAL ALA PRO ALA HIS ARG ASN ARG GLY SEQRES 8 A 148 VAL GLY THR ALA LEU LEU GLN ARG VAL PHE GLU GLU ILE SEQRES 9 A 148 ARG LYS HIS SER ALA GLY GLU LEU GLN ILE ASN VAL ASP SEQRES 10 A 148 GLU VAL ASP THR ASP ALA ARG ARG PHE TYR GLU ARG HIS SEQRES 11 A 148 GLY LEU THR ASN ILE GLU GLN GLY SER ARG MET LEU LEU SEQRES 12 A 148 TYR ILE ARG GLU LEU SEQRES 1 B 148 MET THR THR THR ASN GLU ILE ARG VAL ALA GLU VAL ALA SEQRES 2 B 148 ASP ALA GLY VAL VAL ALA LYS LEU LEU ARG ASP PHE ASN SEQRES 3 B 148 THR GLU PHE ASP THR PRO VAL PRO GLU GLY LEU GLU GLU SEQRES 4 B 148 ARG PHE ALA GLN ILE ILE ALA HIS ASP ASP ALA PHE VAL SEQRES 5 B 148 LEU LEU ALA GLY ASP ILE GLY PHE ALA TYR VAL THR LEU SEQRES 6 B 148 ARG PRO SER PRO TYR TYR ASP GLY PRO VAL ALA MET LEU SEQRES 7 B 148 ASP GLU LEU TYR VAL ALA PRO ALA HIS ARG ASN ARG GLY SEQRES 8 B 148 VAL GLY THR ALA LEU LEU GLN ARG VAL PHE GLU GLU ILE SEQRES 9 B 148 ARG LYS HIS SER ALA GLY GLU LEU GLN ILE ASN VAL ASP SEQRES 10 B 148 GLU VAL ASP THR ASP ALA ARG ARG PHE TYR GLU ARG HIS SEQRES 11 B 148 GLY LEU THR ASN ILE GLU GLN GLY SER ARG MET LEU LEU SEQRES 12 B 148 TYR ILE ARG GLU LEU HET COA A 201 160 HET COA B 201 80 HET TOY B 202 69 HETNAM COA COENZYME A HETNAM TOY TOBRAMYCIN HETSYN TOY 4-AMINO-2-[4,6-DIAMINO-3-(3-AMINO-6-AMINOMETHYL-5- HETSYN 2 TOY HYDROXY-TETRAHYDRO-PYRAN-2-YLOXY)-2-HYDROXY- HETSYN 3 TOY CYCLOHEXYLOXY]-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN-3,5- HETSYN 4 TOY DIOL FORMUL 3 COA 2(C21 H36 N7 O16 P3 S) FORMUL 5 TOY C18 H37 N5 O9 FORMUL 6 HOH *276(H2 O) HELIX 1 AA1 GLU A 11 ALA A 13 5 3 HELIX 2 AA2 ASP A 14 PHE A 29 1 16 HELIX 3 AA3 GLY A 36 ASP A 48 1 13 HELIX 4 AA4 PRO A 85 ARG A 88 5 4 HELIX 5 AA5 GLY A 91 HIS A 107 1 17 HELIX 6 AA6 ASP A 120 HIS A 130 1 11 HELIX 7 AA7 GLU B 11 ALA B 13 5 3 HELIX 8 AA8 ASP B 14 PHE B 29 1 16 HELIX 9 AA9 GLY B 36 ALA B 46 1 11 HELIX 10 AB1 PRO B 85 ARG B 88 5 4 HELIX 11 AB2 GLY B 91 HIS B 107 1 17 HELIX 12 AB3 ASP B 120 HIS B 130 1 11 SHEET 1 AA1 7 ILE A 7 VAL A 9 0 SHEET 2 AA1 7 ALA A 50 ALA A 55 -1 O LEU A 54 N ARG A 8 SHEET 3 AA1 7 GLY A 59 ARG A 66 -1 O ALA A 61 N LEU A 53 SHEET 4 AA1 7 VAL A 75 VAL A 83 -1 O GLU A 80 N TYR A 62 SHEET 5 AA1 7 GLU A 111 ASP A 117 1 O GLU A 111 N ALA A 76 SHEET 6 AA1 7 SER B 139 GLU B 147 -1 O TYR B 144 N ILE A 114 SHEET 7 AA1 7 ILE B 135 GLU B 136 -1 N GLU B 136 O SER B 139 SHEET 1 AA2 7 ILE A 135 GLU A 136 0 SHEET 2 AA2 7 SER A 139 GLU A 147 -1 O SER A 139 N GLU A 136 SHEET 3 AA2 7 GLU B 111 ASP B 117 -1 O ILE B 114 N TYR A 144 SHEET 4 AA2 7 VAL B 75 VAL B 83 1 N ALA B 76 O GLU B 111 SHEET 5 AA2 7 GLY B 59 ARG B 66 -1 N ARG B 66 O VAL B 75 SHEET 6 AA2 7 ALA B 50 ALA B 55 -1 N PHE B 51 O VAL B 63 SHEET 7 AA2 7 ARG B 8 VAL B 9 -1 N ARG B 8 O LEU B 54 CRYST1 35.179 101.598 39.828 90.00 106.11 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028426 0.000000 0.008210 0.00000 SCALE2 0.000000 0.009843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026134 0.00000 CONECT 4474 4476 4484 CONECT 4475 4477 4485 CONECT 4476 4474 4478 4570 CONECT 4477 4475 4479 4571 CONECT 4478 4476 4480 CONECT 4479 4477 4481 CONECT 4480 4478 4482 4492 CONECT 4481 4479 4483 4493 CONECT 4482 4480 4484 4488 CONECT 4483 4481 4485 4489 CONECT 4484 4474 4482 4486 CONECT 4485 4475 4483 4487 CONECT 4486 4484 4572 4574 CONECT 4487 4485 4573 4575 CONECT 4488 4482 4490 CONECT 4489 4483 4491 CONECT 4490 4488 4492 4576 CONECT 4491 4489 4493 4577 CONECT 4492 4480 4490 4494 CONECT 4493 4481 4491 4495 CONECT 4494 4492 4496 4514 4578 CONECT 4495 4493 4497 4515 4579 CONECT 4496 4494 4498 4500 4580 CONECT 4497 4495 4499 4501 4581 CONECT 4498 4496 4582 CONECT 4499 4497 4583 CONECT 4500 4496 4502 4512 4584 CONECT 4501 4497 4503 4513 4585 CONECT 4502 4500 4504 CONECT 4503 4501 4505 CONECT 4504 4502 4506 4508 4510 CONECT 4505 4503 4507 4509 4511 CONECT 4506 4504 CONECT 4507 4505 CONECT 4508 4504 CONECT 4509 4505 CONECT 4510 4504 CONECT 4511 4505 CONECT 4512 4500 4514 4516 4586 CONECT 4513 4501 4515 4517 4587 CONECT 4514 4494 4512 CONECT 4515 4495 4513 CONECT 4516 4512 4518 4588 4590 CONECT 4517 4513 4519 4589 4591 CONECT 4518 4516 4520 CONECT 4519 4517 4521 CONECT 4520 4518 4522 4524 4526 CONECT 4521 4519 4523 4525 4527 CONECT 4522 4520 CONECT 4523 4521 CONECT 4524 4520 CONECT 4525 4521 CONECT 4526 4520 4528 CONECT 4527 4521 4529 CONECT 4528 4526 4530 4532 4534 CONECT 4529 4527 4531 4533 4535 CONECT 4530 4528 CONECT 4531 4529 CONECT 4532 4528 CONECT 4533 4529 CONECT 4534 4528 4538 CONECT 4535 4529 4539 CONECT 4536 4538 4540 4542 4544 CONECT 4537 4539 4541 4543 4545 CONECT 4538 4534 4536 4592 4594 CONECT 4539 4535 4537 4593 4595 CONECT 4540 4536 4596 4598 4600 CONECT 4541 4537 4597 4599 4601 CONECT 4542 4536 4602 4604 4606 CONECT 4543 4537 4603 4605 4607 CONECT 4544 4536 4546 4548 4608 CONECT 4545 4537 4547 4549 4609 CONECT 4546 4544 4610 CONECT 4547 4545 4611 CONECT 4548 4544 4550 4552 CONECT 4549 4545 4551 4553 CONECT 4550 4548 CONECT 4551 4549 CONECT 4552 4548 4554 4612 CONECT 4553 4549 4555 4613 CONECT 4554 4552 4556 4614 4616 CONECT 4555 4553 4557 4615 4617 CONECT 4556 4554 4558 4618 4620 CONECT 4557 4555 4559 4619 4621 CONECT 4558 4556 4560 4562 CONECT 4559 4557 4561 4563 CONECT 4560 4558 CONECT 4561 4559 CONECT 4562 4558 4564 4622 CONECT 4563 4559 4565 4623 CONECT 4564 4562 4566 4624 4626 CONECT 4565 4563 4567 4625 4627 CONECT 4566 4564 4568 4628 4630 CONECT 4567 4565 4569 4629 4631 CONECT 4568 4566 4632 CONECT 4569 4567 4633 CONECT 4570 4476 CONECT 4571 4477 CONECT 4572 4486 CONECT 4573 4487 CONECT 4574 4486 CONECT 4575 4487 CONECT 4576 4490 CONECT 4577 4491 CONECT 4578 4494 CONECT 4579 4495 CONECT 4580 4496 CONECT 4581 4497 CONECT 4582 4498 CONECT 4583 4499 CONECT 4584 4500 CONECT 4585 4501 CONECT 4586 4512 CONECT 4587 4513 CONECT 4588 4516 CONECT 4589 4517 CONECT 4590 4516 CONECT 4591 4517 CONECT 4592 4538 CONECT 4593 4539 CONECT 4594 4538 CONECT 4595 4539 CONECT 4596 4540 CONECT 4597 4541 CONECT 4598 4540 CONECT 4599 4541 CONECT 4600 4540 CONECT 4601 4541 CONECT 4602 4542 CONECT 4603 4543 CONECT 4604 4542 CONECT 4605 4543 CONECT 4606 4542 CONECT 4607 4543 CONECT 4608 4544 CONECT 4609 4545 CONECT 4610 4546 CONECT 4611 4547 CONECT 4612 4552 CONECT 4613 4553 CONECT 4614 4554 CONECT 4615 4555 CONECT 4616 4554 CONECT 4617 4555 CONECT 4618 4556 CONECT 4619 4557 CONECT 4620 4556 CONECT 4621 4557 CONECT 4622 4562 CONECT 4623 4563 CONECT 4624 4564 CONECT 4625 4565 CONECT 4626 4564 CONECT 4627 4565 CONECT 4628 4566 CONECT 4629 4567 CONECT 4630 4566 CONECT 4631 4567 CONECT 4632 4568 CONECT 4633 4569 CONECT 4634 4635 4639 CONECT 4635 4634 4636 4682 CONECT 4636 4635 4637 CONECT 4637 4636 4638 4643 CONECT 4638 4637 4639 4641 CONECT 4639 4634 4638 4640 CONECT 4640 4639 4683 4684 CONECT 4641 4638 4642 CONECT 4642 4641 4643 4685 CONECT 4643 4637 4642 4644 CONECT 4644 4643 4645 4654 4686 CONECT 4645 4644 4646 4647 4687 CONECT 4646 4645 4688 CONECT 4647 4645 4648 4653 4689 CONECT 4648 4647 4649 CONECT 4649 4648 4650 4651 4652 CONECT 4650 4649 CONECT 4651 4649 CONECT 4652 4649 CONECT 4653 4647 4654 4655 4690 CONECT 4654 4644 4653 CONECT 4655 4653 4656 4691 4692 CONECT 4656 4655 4657 CONECT 4657 4656 4658 4659 4660 CONECT 4658 4657 CONECT 4659 4657 CONECT 4660 4657 4661 CONECT 4661 4660 4662 4663 4664 CONECT 4662 4661 CONECT 4663 4661 CONECT 4664 4661 4666 CONECT 4665 4666 4667 4668 4669 CONECT 4666 4664 4665 4693 4694 CONECT 4667 4665 4695 4696 4697 CONECT 4668 4665 4698 4699 4700 CONECT 4669 4665 4670 4671 4701 CONECT 4670 4669 4702 CONECT 4671 4669 4672 4673 CONECT 4672 4671 CONECT 4673 4671 4674 4703 CONECT 4674 4673 4675 4704 4705 CONECT 4675 4674 4676 4706 4707 CONECT 4676 4675 4677 4678 CONECT 4677 4676 CONECT 4678 4676 4679 4708 CONECT 4679 4678 4680 4709 4710 CONECT 4680 4679 4681 4711 4712 CONECT 4681 4680 4713 CONECT 4682 4635 CONECT 4683 4640 CONECT 4684 4640 CONECT 4685 4642 CONECT 4686 4644 CONECT 4687 4645 CONECT 4688 4646 CONECT 4689 4647 CONECT 4690 4653 CONECT 4691 4655 CONECT 4692 4655 CONECT 4693 4666 CONECT 4694 4666 CONECT 4695 4667 CONECT 4696 4667 CONECT 4697 4667 CONECT 4698 4668 CONECT 4699 4668 CONECT 4700 4668 CONECT 4701 4669 CONECT 4702 4670 CONECT 4703 4673 CONECT 4704 4674 CONECT 4705 4674 CONECT 4706 4675 CONECT 4707 4675 CONECT 4708 4678 CONECT 4709 4679 CONECT 4710 4679 CONECT 4711 4680 CONECT 4712 4680 CONECT 4713 4681 CONECT 4714 4715 4716 4722 4746 CONECT 4715 4714 4730 CONECT 4716 4714 4717 4718 4747 CONECT 4717 4716 4748 4749 CONECT 4718 4716 4719 4750 4751 CONECT 4719 4718 4720 4721 4752 CONECT 4720 4719 4753 CONECT 4721 4719 4722 4723 4754 CONECT 4722 4714 4721 CONECT 4723 4721 4724 4755 4756 CONECT 4724 4723 4757 4758 CONECT 4725 4726 4727 4733 4759 CONECT 4726 4725 4760 4761 CONECT 4727 4725 4728 4762 4763 CONECT 4728 4727 4729 4730 4764 CONECT 4729 4728 4765 4766 CONECT 4730 4715 4728 4731 4767 CONECT 4731 4730 4732 4733 4768 CONECT 4732 4731 4769 CONECT 4733 4725 4731 4734 4770 CONECT 4734 4733 4735 CONECT 4735 4734 4736 4743 4771 CONECT 4736 4735 4737 4738 4772 CONECT 4737 4736 4773 CONECT 4738 4736 4739 4740 4774 CONECT 4739 4738 4775 4776 CONECT 4740 4738 4741 4742 4777 CONECT 4741 4740 4778 CONECT 4742 4740 4743 4744 4779 CONECT 4743 4735 4742 CONECT 4744 4742 4745 4780 4781 CONECT 4745 4744 4782 CONECT 4746 4714 CONECT 4747 4716 CONECT 4748 4717 CONECT 4749 4717 CONECT 4750 4718 CONECT 4751 4718 CONECT 4752 4719 CONECT 4753 4720 CONECT 4754 4721 CONECT 4755 4723 CONECT 4756 4723 CONECT 4757 4724 CONECT 4758 4724 CONECT 4759 4725 CONECT 4760 4726 CONECT 4761 4726 CONECT 4762 4727 CONECT 4763 4727 CONECT 4764 4728 CONECT 4765 4729 CONECT 4766 4729 CONECT 4767 4730 CONECT 4768 4731 CONECT 4769 4732 CONECT 4770 4733 CONECT 4771 4735 CONECT 4772 4736 CONECT 4773 4737 CONECT 4774 4738 CONECT 4775 4739 CONECT 4776 4739 CONECT 4777 4740 CONECT 4778 4741 CONECT 4779 4742 CONECT 4780 4744 CONECT 4781 4744 CONECT 4782 4745 MASTER 459 0 3 12 14 0 0 6 2620 2 309 24 END