data_9MRF # _entry.id 9MRF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.401 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9MRF pdb_00009mrf 10.2210/pdb9mrf/pdb WWPDB D_1000291108 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-01-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9MRF _pdbx_database_status.recvd_initial_deposition_date 2025-01-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email mmravic@scripps.edu _pdbx_contact_author.name_first Marco _pdbx_contact_author.name_last Mravic _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6294-1824 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mravic, M.' 1 0000-0001-6294-1824 'Zhang, M.' 2 0009-0007-3485-6324 'Anderson, C.T.' 3 ? # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? ? ? ? primary 'To Be Published' ? 0353 ? ? ? ? ? ? ? 'De novo designed apolar residue motif transmembrane helix' ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 'Acta Crystallogr D Struct Biol' ? 0353 ? ? ? ? ? ? ? 'Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix' 2019 ? 10.1107/S2059798319011471 31588918 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mravic, M.' 1 0000-0001-6294-1824 primary 'Zhang, M.' 2 0009-0007-3485-6324 primary 'Anderson, C.T.' 3 ? 1 'Liebschner, D.' 4 0000-0003-3921-3209 1 'Afonine, P.V.' 5 0000-0002-5052-991X 1 'Baker, M.L.' 6 ? 1 'Bunkoczi, G.' 7 ? 1 'Chen, V.B.' 8 0000-0003-2492-979X 1 'Croll, T.I.' 9 ? 1 'Hintze, B.' 10 0000-0002-4871-2096 1 'Hung, L.W.' 11 0000-0001-6690-8458 1 'Jain, S.' 12 ? 1 'McCoy, A.J.' 13 ? 1 'Moriarty, N.W.' 14 0000-0001-8857-9464 1 'Oeffner, R.D.' 15 0000-0003-3107-2202 1 'Poon, B.K.' 16 0000-0001-9633-6067 1 'Prisant, M.G.' 17 ? 1 'Read, R.J.' 18 0000-0001-8273-0047 1 'Richardson, J.S.' 19 0000-0002-3311-2944 1 'Richardson, D.C.' 20 ? 1 'Sammito, M.D.' 21 0000-0002-8346-9247 1 'Sobolev, O.V.' 22 0000-0002-0623-3214 1 'Stockwell, D.H.' 23 ? 1 'Terwilliger, T.C.' 24 0000-0001-6384-0320 1 'Urzhumtsev, A.G.' 25 ? 1 'Videau, L.L.' 26 ? 1 'Williams, C.J.' 27 ? 1 'Adams, P.D.' 28 0000-0001-9333-8219 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ApolarResidue_denovo_design_46727_KFYK 3412.066 2 ? ? ? ? 2 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 2 ? ? ? ? 3 water nat water 18.015 32 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SAASDLDELLWVIAVTIFGLVLIASILKFYK _entity_poly.pdbx_seq_one_letter_code_can SAASDLDELLWVIAVTIFGLVLIASILKFYK _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DI(HYDROXYETHYL)ETHER' PEG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ALA n 1 3 ALA n 1 4 SER n 1 5 ASP n 1 6 LEU n 1 7 ASP n 1 8 GLU n 1 9 LEU n 1 10 LEU n 1 11 TRP n 1 12 VAL n 1 13 ILE n 1 14 ALA n 1 15 VAL n 1 16 THR n 1 17 ILE n 1 18 PHE n 1 19 GLY n 1 20 LEU n 1 21 VAL n 1 22 LEU n 1 23 ILE n 1 24 ALA n 1 25 SER n 1 26 ILE n 1 27 LEU n 1 28 LYS n 1 29 PHE n 1 30 TYR n 1 31 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 31 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -3 -3 SER SER A . n A 1 2 ALA 2 -2 -2 ALA ALA A . n A 1 3 ALA 3 -1 -1 ALA ALA A . n A 1 4 SER 4 0 0 SER SER A . n A 1 5 ASP 5 1 1 ASP ASP A . n A 1 6 LEU 6 2 2 LEU LEU A . n A 1 7 ASP 7 3 3 ASP ASP A . n A 1 8 GLU 8 4 4 GLU GLU A . n A 1 9 LEU 9 5 5 LEU LEU A . n A 1 10 LEU 10 6 6 LEU LEU A . n A 1 11 TRP 11 7 7 TRP TRP A . n A 1 12 VAL 12 8 8 VAL VAL A . n A 1 13 ILE 13 9 9 ILE ILE A . n A 1 14 ALA 14 10 10 ALA ALA A . n A 1 15 VAL 15 11 11 VAL VAL A . n A 1 16 THR 16 12 12 THR THR A . n A 1 17 ILE 17 13 13 ILE ILE A . n A 1 18 PHE 18 14 14 PHE PHE A . n A 1 19 GLY 19 15 15 GLY GLY A . n A 1 20 LEU 20 16 16 LEU LEU A . n A 1 21 VAL 21 17 17 VAL VAL A . n A 1 22 LEU 22 18 18 LEU LEU A . n A 1 23 ILE 23 19 19 ILE ILE A . n A 1 24 ALA 24 20 20 ALA ALA A . n A 1 25 SER 25 21 21 SER SER A . n A 1 26 ILE 26 22 22 ILE ILE A . n A 1 27 LEU 27 23 23 LEU LEU A . n A 1 28 LYS 28 24 24 LYS LYS A . n A 1 29 PHE 29 25 25 PHE PHE A . n A 1 30 TYR 30 26 26 TYR TYR A . n A 1 31 LYS 31 27 27 LYS LYS A . n B 1 1 SER 1 -3 -3 SER SER B . n B 1 2 ALA 2 -2 -2 ALA ALA B . n B 1 3 ALA 3 -1 -1 ALA ALA B . n B 1 4 SER 4 0 0 SER SER B . n B 1 5 ASP 5 1 1 ASP ASP B . n B 1 6 LEU 6 2 2 LEU LEU B . n B 1 7 ASP 7 3 3 ASP ASP B . n B 1 8 GLU 8 4 4 GLU GLU B . n B 1 9 LEU 9 5 5 LEU LEU B . n B 1 10 LEU 10 6 6 LEU LEU B . n B 1 11 TRP 11 7 7 TRP TRP B . n B 1 12 VAL 12 8 8 VAL VAL B . n B 1 13 ILE 13 9 9 ILE ILE B . n B 1 14 ALA 14 10 10 ALA ALA B . n B 1 15 VAL 15 11 11 VAL VAL B . n B 1 16 THR 16 12 12 THR THR B . n B 1 17 ILE 17 13 13 ILE ILE B . n B 1 18 PHE 18 14 14 PHE PHE B . n B 1 19 GLY 19 15 15 GLY GLY B . n B 1 20 LEU 20 16 16 LEU LEU B . n B 1 21 VAL 21 17 17 VAL VAL B . n B 1 22 LEU 22 18 18 LEU LEU B . n B 1 23 ILE 23 19 19 ILE ILE B . n B 1 24 ALA 24 20 20 ALA ALA B . n B 1 25 SER 25 21 21 SER SER B . n B 1 26 ILE 26 22 22 ILE ILE B . n B 1 27 LEU 27 23 23 LEU LEU B . n B 1 28 LYS 28 24 24 LYS LYS B . n B 1 29 PHE 29 25 25 PHE PHE B . n B 1 30 TYR 30 26 26 TYR TYR B . n B 1 31 LYS 31 27 27 LYS LYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG 1 101 101 PEG PEG A . D 2 PEG 1 101 101 PEG PEG B . E 3 HOH 1 201 243 HOH HOH A . E 3 HOH 2 202 267 HOH HOH A . E 3 HOH 3 203 362 HOH HOH A . E 3 HOH 4 204 354 HOH HOH A . E 3 HOH 5 205 242 HOH HOH A . E 3 HOH 6 206 307 HOH HOH A . E 3 HOH 7 207 152 HOH HOH A . E 3 HOH 8 208 25 HOH HOH A . E 3 HOH 9 209 377 HOH HOH A . E 3 HOH 10 210 248 HOH HOH A . E 3 HOH 11 211 89 HOH HOH A . E 3 HOH 12 212 367 HOH HOH A . E 3 HOH 13 213 397 HOH HOH A . E 3 HOH 14 214 299 HOH HOH A . E 3 HOH 15 215 293 HOH HOH A . E 3 HOH 16 216 375 HOH HOH A . E 3 HOH 17 217 373 HOH HOH A . F 3 HOH 1 201 376 HOH HOH B . F 3 HOH 2 202 86 HOH HOH B . F 3 HOH 3 203 313 HOH HOH B . F 3 HOH 4 204 329 HOH HOH B . F 3 HOH 5 205 396 HOH HOH B . F 3 HOH 6 206 108 HOH HOH B . F 3 HOH 7 207 320 HOH HOH B . F 3 HOH 8 208 409 HOH HOH B . F 3 HOH 9 209 323 HOH HOH B . F 3 HOH 10 210 368 HOH HOH B . F 3 HOH 11 211 364 HOH HOH B . F 3 HOH 12 212 393 HOH HOH B . F 3 HOH 13 213 28 HOH HOH B . F 3 HOH 14 214 16 HOH HOH B . F 3 HOH 15 215 391 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 24 ? CG ? A LYS 28 CG 2 1 Y 1 A LYS 24 ? CD ? A LYS 28 CD 3 1 Y 1 A LYS 24 ? CE ? A LYS 28 CE 4 1 Y 1 A LYS 24 ? NZ ? A LYS 28 NZ 5 1 Y 1 A PHE 25 ? CD1 ? A PHE 29 CD1 6 1 Y 1 A PHE 25 ? CD2 ? A PHE 29 CD2 7 1 Y 1 A PHE 25 ? CE1 ? A PHE 29 CE1 8 1 Y 1 A PHE 25 ? CE2 ? A PHE 29 CE2 9 1 Y 1 A PHE 25 ? CZ ? A PHE 29 CZ 10 1 Y 1 A LYS 27 ? CG ? A LYS 31 CG 11 1 Y 1 A LYS 27 ? CD ? A LYS 31 CD 12 1 Y 1 A LYS 27 ? CE ? A LYS 31 CE 13 1 Y 1 A LYS 27 ? NZ ? A LYS 31 NZ 14 1 Y 1 B LYS 24 ? CG ? B LYS 28 CG 15 1 Y 1 B LYS 24 ? CD ? B LYS 28 CD 16 1 Y 1 B LYS 24 ? CE ? B LYS 28 CE 17 1 Y 1 B LYS 24 ? NZ ? B LYS 28 NZ 18 1 Y 1 B PHE 25 ? CD1 ? B PHE 29 CD1 19 1 Y 1 B PHE 25 ? CE1 ? B PHE 29 CE1 20 1 Y 1 B PHE 25 ? CE2 ? B PHE 29 CE2 21 1 Y 1 B PHE 25 ? CZ ? B PHE 29 CZ 22 1 Y 1 B LYS 27 ? NZ ? B LYS 31 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.21.2_5419 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9MRF _cell.details ? _cell.formula_units_Z ? _cell.length_a 39.599 _cell.length_a_esd ? _cell.length_b 48.745 _cell.length_b_esd ? _cell.length_c 29.756 _cell.length_c_esd ? _cell.volume 57436.616 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9MRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall 'P 2c 2' _symmetry.space_group_name_H-M 'P 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9MRF _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'LIPIDIC CUBIC PHASE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.01M HEPES pH7.5, 3.5M 1,6-Hexanediol' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2024-10-30 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97946 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL12-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97946 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL12-1 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate 20.33 _reflns.entry_id 9MRF _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2 _reflns.d_resolution_low 30 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4159 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.084 _reflns.pdbx_Rpim_I_all 0.034 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.981 _reflns.pdbx_CC_star 0.995 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2 _reflns_shell.d_res_low 2.03 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 200 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.2 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.932 _reflns_shell.pdbx_CC_star 0.982 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 21.96 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9MRF _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.00 _refine.ls_d_res_low 25.40 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4146 _refine.ls_number_reflns_R_free 203 _refine.ls_number_reflns_R_work 3943 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.22 _refine.ls_percent_reflns_R_free 4.90 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2157 _refine.ls_R_factor_R_free 0.2524 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2139 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.09 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 18.6779 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1347 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 25.40 _refine_hist.number_atoms_solvent 32 _refine_hist.number_atoms_total 508 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 462 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0107 ? 486 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.1658 ? 662 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0634 ? 89 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0066 ? 76 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 12.4749 ? 161 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 25.40 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 203 _refine_ls_shell.number_reflns_R_work 3943 _refine_ls_shell.percent_reflns_obs 98.22 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2139 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.2524 # _struct.entry_id 9MRF _struct.title 'De novo designed apolar residue motif transmembrane helix' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9MRF _struct_keywords.text 'Membrane protein, De novo design, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9MRF _struct_ref.pdbx_db_accession 9MRF _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9MRF A 1 ? 31 ? 9MRF -3 ? 27 ? -3 27 2 1 9MRF B 1 ? 31 ? 9MRF -3 ? 27 ? -3 27 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 1 ? TYR A 30 ? SER A -3 TYR A 26 1 ? 30 HELX_P HELX_P2 AA2 ALA B 2 ? TYR B 30 ? ALA B -2 TYR B 26 1 ? 29 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_entry_details.entry_id 9MRF _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 213 ? E HOH . 2 1 A HOH 216 ? E HOH . 3 1 A HOH 217 ? E HOH . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x,-y,-z 3 -x,y,-z+1/2 4 -x,-y,z+1/2 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 217 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.21 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASP N N N N 14 ASP CA C N S 15 ASP C C N N 16 ASP O O N N 17 ASP CB C N N 18 ASP CG C N N 19 ASP OD1 O N N 20 ASP OD2 O N N 21 ASP OXT O N N 22 ASP H H N N 23 ASP H2 H N N 24 ASP HA H N N 25 ASP HB2 H N N 26 ASP HB3 H N N 27 ASP HD2 H N N 28 ASP HXT H N N 29 GLU N N N N 30 GLU CA C N S 31 GLU C C N N 32 GLU O O N N 33 GLU CB C N N 34 GLU CG C N N 35 GLU CD C N N 36 GLU OE1 O N N 37 GLU OE2 O N N 38 GLU OXT O N N 39 GLU H H N N 40 GLU H2 H N N 41 GLU HA H N N 42 GLU HB2 H N N 43 GLU HB3 H N N 44 GLU HG2 H N N 45 GLU HG3 H N N 46 GLU HE2 H N N 47 GLU HXT H N N 48 GLY N N N N 49 GLY CA C N N 50 GLY C C N N 51 GLY O O N N 52 GLY OXT O N N 53 GLY H H N N 54 GLY H2 H N N 55 GLY HA2 H N N 56 GLY HA3 H N N 57 GLY HXT H N N 58 HOH O O N N 59 HOH H1 H N N 60 HOH H2 H N N 61 ILE N N N N 62 ILE CA C N S 63 ILE C C N N 64 ILE O O N N 65 ILE CB C N S 66 ILE CG1 C N N 67 ILE CG2 C N N 68 ILE CD1 C N N 69 ILE OXT O N N 70 ILE H H N N 71 ILE H2 H N N 72 ILE HA H N N 73 ILE HB H N N 74 ILE HG12 H N N 75 ILE HG13 H N N 76 ILE HG21 H N N 77 ILE HG22 H N N 78 ILE HG23 H N N 79 ILE HD11 H N N 80 ILE HD12 H N N 81 ILE HD13 H N N 82 ILE HXT H N N 83 LEU N N N N 84 LEU CA C N S 85 LEU C C N N 86 LEU O O N N 87 LEU CB C N N 88 LEU CG C N N 89 LEU CD1 C N N 90 LEU CD2 C N N 91 LEU OXT O N N 92 LEU H H N N 93 LEU H2 H N N 94 LEU HA H N N 95 LEU HB2 H N N 96 LEU HB3 H N N 97 LEU HG H N N 98 LEU HD11 H N N 99 LEU HD12 H N N 100 LEU HD13 H N N 101 LEU HD21 H N N 102 LEU HD22 H N N 103 LEU HD23 H N N 104 LEU HXT H N N 105 LYS N N N N 106 LYS CA C N S 107 LYS C C N N 108 LYS O O N N 109 LYS CB C N N 110 LYS CG C N N 111 LYS CD C N N 112 LYS CE C N N 113 LYS NZ N N N 114 LYS OXT O N N 115 LYS H H N N 116 LYS H2 H N N 117 LYS HA H N N 118 LYS HB2 H N N 119 LYS HB3 H N N 120 LYS HG2 H N N 121 LYS HG3 H N N 122 LYS HD2 H N N 123 LYS HD3 H N N 124 LYS HE2 H N N 125 LYS HE3 H N N 126 LYS HZ1 H N N 127 LYS HZ2 H N N 128 LYS HZ3 H N N 129 LYS HXT H N N 130 PEG C1 C N N 131 PEG O1 O N N 132 PEG C2 C N N 133 PEG O2 O N N 134 PEG C3 C N N 135 PEG C4 C N N 136 PEG O4 O N N 137 PEG H11 H N N 138 PEG H12 H N N 139 PEG HO1 H N N 140 PEG H21 H N N 141 PEG H22 H N N 142 PEG H31 H N N 143 PEG H32 H N N 144 PEG H41 H N N 145 PEG H42 H N N 146 PEG HO4 H N N 147 PHE N N N N 148 PHE CA C N S 149 PHE C C N N 150 PHE O O N N 151 PHE CB C N N 152 PHE CG C Y N 153 PHE CD1 C Y N 154 PHE CD2 C Y N 155 PHE CE1 C Y N 156 PHE CE2 C Y N 157 PHE CZ C Y N 158 PHE OXT O N N 159 PHE H H N N 160 PHE H2 H N N 161 PHE HA H N N 162 PHE HB2 H N N 163 PHE HB3 H N N 164 PHE HD1 H N N 165 PHE HD2 H N N 166 PHE HE1 H N N 167 PHE HE2 H N N 168 PHE HZ H N N 169 PHE HXT H N N 170 SER N N N N 171 SER CA C N S 172 SER C C N N 173 SER O O N N 174 SER CB C N N 175 SER OG O N N 176 SER OXT O N N 177 SER H H N N 178 SER H2 H N N 179 SER HA H N N 180 SER HB2 H N N 181 SER HB3 H N N 182 SER HG H N N 183 SER HXT H N N 184 THR N N N N 185 THR CA C N S 186 THR C C N N 187 THR O O N N 188 THR CB C N R 189 THR OG1 O N N 190 THR CG2 C N N 191 THR OXT O N N 192 THR H H N N 193 THR H2 H N N 194 THR HA H N N 195 THR HB H N N 196 THR HG1 H N N 197 THR HG21 H N N 198 THR HG22 H N N 199 THR HG23 H N N 200 THR HXT H N N 201 TRP N N N N 202 TRP CA C N S 203 TRP C C N N 204 TRP O O N N 205 TRP CB C N N 206 TRP CG C Y N 207 TRP CD1 C Y N 208 TRP CD2 C Y N 209 TRP NE1 N Y N 210 TRP CE2 C Y N 211 TRP CE3 C Y N 212 TRP CZ2 C Y N 213 TRP CZ3 C Y N 214 TRP CH2 C Y N 215 TRP OXT O N N 216 TRP H H N N 217 TRP H2 H N N 218 TRP HA H N N 219 TRP HB2 H N N 220 TRP HB3 H N N 221 TRP HD1 H N N 222 TRP HE1 H N N 223 TRP HE3 H N N 224 TRP HZ2 H N N 225 TRP HZ3 H N N 226 TRP HH2 H N N 227 TRP HXT H N N 228 TYR N N N N 229 TYR CA C N S 230 TYR C C N N 231 TYR O O N N 232 TYR CB C N N 233 TYR CG C Y N 234 TYR CD1 C Y N 235 TYR CD2 C Y N 236 TYR CE1 C Y N 237 TYR CE2 C Y N 238 TYR CZ C Y N 239 TYR OH O N N 240 TYR OXT O N N 241 TYR H H N N 242 TYR H2 H N N 243 TYR HA H N N 244 TYR HB2 H N N 245 TYR HB3 H N N 246 TYR HD1 H N N 247 TYR HD2 H N N 248 TYR HE1 H N N 249 TYR HE2 H N N 250 TYR HH H N N 251 TYR HXT H N N 252 VAL N N N N 253 VAL CA C N S 254 VAL C C N N 255 VAL O O N N 256 VAL CB C N N 257 VAL CG1 C N N 258 VAL CG2 C N N 259 VAL OXT O N N 260 VAL H H N N 261 VAL H2 H N N 262 VAL HA H N N 263 VAL HB H N N 264 VAL HG11 H N N 265 VAL HG12 H N N 266 VAL HG13 H N N 267 VAL HG21 H N N 268 VAL HG22 H N N 269 VAL HG23 H N N 270 VAL HXT H N N 271 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASP N CA sing N N 13 ASP N H sing N N 14 ASP N H2 sing N N 15 ASP CA C sing N N 16 ASP CA CB sing N N 17 ASP CA HA sing N N 18 ASP C O doub N N 19 ASP C OXT sing N N 20 ASP CB CG sing N N 21 ASP CB HB2 sing N N 22 ASP CB HB3 sing N N 23 ASP CG OD1 doub N N 24 ASP CG OD2 sing N N 25 ASP OD2 HD2 sing N N 26 ASP OXT HXT sing N N 27 GLU N CA sing N N 28 GLU N H sing N N 29 GLU N H2 sing N N 30 GLU CA C sing N N 31 GLU CA CB sing N N 32 GLU CA HA sing N N 33 GLU C O doub N N 34 GLU C OXT sing N N 35 GLU CB CG sing N N 36 GLU CB HB2 sing N N 37 GLU CB HB3 sing N N 38 GLU CG CD sing N N 39 GLU CG HG2 sing N N 40 GLU CG HG3 sing N N 41 GLU CD OE1 doub N N 42 GLU CD OE2 sing N N 43 GLU OE2 HE2 sing N N 44 GLU OXT HXT sing N N 45 GLY N CA sing N N 46 GLY N H sing N N 47 GLY N H2 sing N N 48 GLY CA C sing N N 49 GLY CA HA2 sing N N 50 GLY CA HA3 sing N N 51 GLY C O doub N N 52 GLY C OXT sing N N 53 GLY OXT HXT sing N N 54 HOH O H1 sing N N 55 HOH O H2 sing N N 56 ILE N CA sing N N 57 ILE N H sing N N 58 ILE N H2 sing N N 59 ILE CA C sing N N 60 ILE CA CB sing N N 61 ILE CA HA sing N N 62 ILE C O doub N N 63 ILE C OXT sing N N 64 ILE CB CG1 sing N N 65 ILE CB CG2 sing N N 66 ILE CB HB sing N N 67 ILE CG1 CD1 sing N N 68 ILE CG1 HG12 sing N N 69 ILE CG1 HG13 sing N N 70 ILE CG2 HG21 sing N N 71 ILE CG2 HG22 sing N N 72 ILE CG2 HG23 sing N N 73 ILE CD1 HD11 sing N N 74 ILE CD1 HD12 sing N N 75 ILE CD1 HD13 sing N N 76 ILE OXT HXT sing N N 77 LEU N CA sing N N 78 LEU N H sing N N 79 LEU N H2 sing N N 80 LEU CA C sing N N 81 LEU CA CB sing N N 82 LEU CA HA sing N N 83 LEU C O doub N N 84 LEU C OXT sing N N 85 LEU CB CG sing N N 86 LEU CB HB2 sing N N 87 LEU CB HB3 sing N N 88 LEU CG CD1 sing N N 89 LEU CG CD2 sing N N 90 LEU CG HG sing N N 91 LEU CD1 HD11 sing N N 92 LEU CD1 HD12 sing N N 93 LEU CD1 HD13 sing N N 94 LEU CD2 HD21 sing N N 95 LEU CD2 HD22 sing N N 96 LEU CD2 HD23 sing N N 97 LEU OXT HXT sing N N 98 LYS N CA sing N N 99 LYS N H sing N N 100 LYS N H2 sing N N 101 LYS CA C sing N N 102 LYS CA CB sing N N 103 LYS CA HA sing N N 104 LYS C O doub N N 105 LYS C OXT sing N N 106 LYS CB CG sing N N 107 LYS CB HB2 sing N N 108 LYS CB HB3 sing N N 109 LYS CG CD sing N N 110 LYS CG HG2 sing N N 111 LYS CG HG3 sing N N 112 LYS CD CE sing N N 113 LYS CD HD2 sing N N 114 LYS CD HD3 sing N N 115 LYS CE NZ sing N N 116 LYS CE HE2 sing N N 117 LYS CE HE3 sing N N 118 LYS NZ HZ1 sing N N 119 LYS NZ HZ2 sing N N 120 LYS NZ HZ3 sing N N 121 LYS OXT HXT sing N N 122 PEG C1 O1 sing N N 123 PEG C1 C2 sing N N 124 PEG C1 H11 sing N N 125 PEG C1 H12 sing N N 126 PEG O1 HO1 sing N N 127 PEG C2 O2 sing N N 128 PEG C2 H21 sing N N 129 PEG C2 H22 sing N N 130 PEG O2 C3 sing N N 131 PEG C3 C4 sing N N 132 PEG C3 H31 sing N N 133 PEG C3 H32 sing N N 134 PEG C4 O4 sing N N 135 PEG C4 H41 sing N N 136 PEG C4 H42 sing N N 137 PEG O4 HO4 sing N N 138 PHE N CA sing N N 139 PHE N H sing N N 140 PHE N H2 sing N N 141 PHE CA C sing N N 142 PHE CA CB sing N N 143 PHE CA HA sing N N 144 PHE C O doub N N 145 PHE C OXT sing N N 146 PHE CB CG sing N N 147 PHE CB HB2 sing N N 148 PHE CB HB3 sing N N 149 PHE CG CD1 doub Y N 150 PHE CG CD2 sing Y N 151 PHE CD1 CE1 sing Y N 152 PHE CD1 HD1 sing N N 153 PHE CD2 CE2 doub Y N 154 PHE CD2 HD2 sing N N 155 PHE CE1 CZ doub Y N 156 PHE CE1 HE1 sing N N 157 PHE CE2 CZ sing Y N 158 PHE CE2 HE2 sing N N 159 PHE CZ HZ sing N N 160 PHE OXT HXT sing N N 161 SER N CA sing N N 162 SER N H sing N N 163 SER N H2 sing N N 164 SER CA C sing N N 165 SER CA CB sing N N 166 SER CA HA sing N N 167 SER C O doub N N 168 SER C OXT sing N N 169 SER CB OG sing N N 170 SER CB HB2 sing N N 171 SER CB HB3 sing N N 172 SER OG HG sing N N 173 SER OXT HXT sing N N 174 THR N CA sing N N 175 THR N H sing N N 176 THR N H2 sing N N 177 THR CA C sing N N 178 THR CA CB sing N N 179 THR CA HA sing N N 180 THR C O doub N N 181 THR C OXT sing N N 182 THR CB OG1 sing N N 183 THR CB CG2 sing N N 184 THR CB HB sing N N 185 THR OG1 HG1 sing N N 186 THR CG2 HG21 sing N N 187 THR CG2 HG22 sing N N 188 THR CG2 HG23 sing N N 189 THR OXT HXT sing N N 190 TRP N CA sing N N 191 TRP N H sing N N 192 TRP N H2 sing N N 193 TRP CA C sing N N 194 TRP CA CB sing N N 195 TRP CA HA sing N N 196 TRP C O doub N N 197 TRP C OXT sing N N 198 TRP CB CG sing N N 199 TRP CB HB2 sing N N 200 TRP CB HB3 sing N N 201 TRP CG CD1 doub Y N 202 TRP CG CD2 sing Y N 203 TRP CD1 NE1 sing Y N 204 TRP CD1 HD1 sing N N 205 TRP CD2 CE2 doub Y N 206 TRP CD2 CE3 sing Y N 207 TRP NE1 CE2 sing Y N 208 TRP NE1 HE1 sing N N 209 TRP CE2 CZ2 sing Y N 210 TRP CE3 CZ3 doub Y N 211 TRP CE3 HE3 sing N N 212 TRP CZ2 CH2 doub Y N 213 TRP CZ2 HZ2 sing N N 214 TRP CZ3 CH2 sing Y N 215 TRP CZ3 HZ3 sing N N 216 TRP CH2 HH2 sing N N 217 TRP OXT HXT sing N N 218 TYR N CA sing N N 219 TYR N H sing N N 220 TYR N H2 sing N N 221 TYR CA C sing N N 222 TYR CA CB sing N N 223 TYR CA HA sing N N 224 TYR C O doub N N 225 TYR C OXT sing N N 226 TYR CB CG sing N N 227 TYR CB HB2 sing N N 228 TYR CB HB3 sing N N 229 TYR CG CD1 doub Y N 230 TYR CG CD2 sing Y N 231 TYR CD1 CE1 sing Y N 232 TYR CD1 HD1 sing N N 233 TYR CD2 CE2 doub Y N 234 TYR CD2 HD2 sing N N 235 TYR CE1 CZ doub Y N 236 TYR CE1 HE1 sing N N 237 TYR CE2 CZ sing Y N 238 TYR CE2 HE2 sing N N 239 TYR CZ OH sing N N 240 TYR OH HH sing N N 241 TYR OXT HXT sing N N 242 VAL N CA sing N N 243 VAL N H sing N N 244 VAL N H2 sing N N 245 VAL CA C sing N N 246 VAL CA CB sing N N 247 VAL CA HA sing N N 248 VAL C O doub N N 249 VAL C OXT sing N N 250 VAL CB CG1 sing N N 251 VAL CB CG2 sing N N 252 VAL CB HB sing N N 253 VAL CG1 HG11 sing N N 254 VAL CG1 HG12 sing N N 255 VAL CG1 HG13 sing N N 256 VAL CG2 HG21 sing N N 257 VAL CG2 HG22 sing N N 258 VAL CG2 HG23 sing N N 259 VAL OXT HXT sing N N 260 # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name RoseTTAFold _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'P 2 2 21' _space_group.name_Hall 'P 2c 2' _space_group.IT_number 17 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 9MRF _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.025253 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020515 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033607 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 ? ? 3.49406 27.47979 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ #