HEADER VIRAL PROTEIN/IMMUNE SYSTEM 09-JAN-25 9MSK TITLE STRUCTURE OF HEPATITIS C VIRUS ENVELOPE GLYCOPROTEIN E2 CORE FROM TITLE 2 ISOLATE H77 BOUND TO NEUTRALIZING ANTIBODY RM3-26 CAVEAT 9MSK NAG E 701 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RM3-26 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RM3-26 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ENVELOPE GLYCOPROTEIN E2; COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_COMMON: RHESUS MONKEY; SOURCE 4 ORGANISM_TAXID: 9544; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 10 ORGANISM_COMMON: RHESUS MONKEY; SOURCE 11 ORGANISM_TAXID: 9544; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS (ISOLATE 1); SOURCE 17 ORGANISM_TAXID: 11104; SOURCE 18 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 19 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS IMMUNITY PROTEINS, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.K.Y.NGUYEN,I.A.WILSON REVDAT 1 01-JUL-26 9MSK 0 JRNL AUTH F.CHEN,Y.T.K.NGUYEN,Y.Z.LEE,E.GIANG,S.C.LAU,Y.KOIDE, JRNL AUTH 2 S.H.HUNG,L.UENO,L.HE,T.R.FUERST,G.M.LAUER,R.L.STANFIELD, JRNL AUTH 3 J.ZHU,I.A.WILSON,M.LAW JRNL TITL THE CONSERVED BRIDGING DOMAIN ON HCV E1E2 GLYCOPROTEIN JRNL TITL 2 COMPLEX IS TARGETED BY NEUTRALIZING ANTIBODIES FROM DIVERSE JRNL TITL 3 LINEAGES. JRNL REF BIORXIV 2025 JRNL REFN ISSN 2692-8205 JRNL PMID 41280117 JRNL DOI 10.1101/2025.11.05.686883 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 31984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.264 REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 1667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9700 - 5.1100 1.00 2807 163 0.2149 0.2160 REMARK 3 2 5.1100 - 4.0600 1.00 2758 147 0.1955 0.2154 REMARK 3 3 4.0600 - 3.5400 0.96 2613 156 0.2426 0.2662 REMARK 3 4 3.5400 - 3.2200 0.99 2691 156 0.2727 0.2752 REMARK 3 5 3.2200 - 2.9900 1.00 2727 153 0.2893 0.3420 REMARK 3 6 2.9900 - 2.8100 1.00 2747 147 0.2987 0.3417 REMARK 3 7 2.8100 - 2.6700 0.99 2714 133 0.3433 0.3793 REMARK 3 8 2.6700 - 2.5600 0.97 2623 149 0.3563 0.3605 REMARK 3 9 2.5600 - 2.4600 0.99 2681 155 0.3705 0.3651 REMARK 3 10 2.4600 - 2.3700 0.95 2606 146 0.3975 0.4888 REMARK 3 11 2.3700 - 2.3000 0.66 1791 91 0.4685 0.4396 REMARK 3 12 2.3000 - 2.2300 0.57 1559 71 0.6327 0.5772 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.560 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4023 REMARK 3 ANGLE : 1.609 5475 REMARK 3 CHIRALITY : 0.091 619 REMARK 3 PLANARITY : 0.034 694 REMARK 3 DIHEDRAL : 18.266 1436 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9MSK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1000291722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33892 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 36.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM THIOCYANATE, 20% W/V REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.77050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.97450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.77050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.97450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA E 432 REMARK 465 ARG E 433 REMARK 465 GLN E 434 REMARK 465 LEU E 435 REMARK 465 ILE E 436 REMARK 465 ASN E 437 REMARK 465 THR E 438 REMARK 465 ASN E 439 REMARK 465 GLY E 440 REMARK 465 SER E 441 REMARK 465 TRP E 442 REMARK 465 HIS E 443 REMARK 465 ILE E 444 REMARK 465 ASN E 445 REMARK 465 SER E 446 REMARK 465 THR E 447 REMARK 465 ALA E 448 REMARK 465 LEU E 449 REMARK 465 ASN E 450 REMARK 465 CYS E 451 REMARK 465 ASN E 452 REMARK 465 GLU E 453 REMARK 465 SER E 454 REMARK 465 LEU E 455 REMARK 465 ASN E 456 REMARK 465 THR E 457 REMARK 465 GLY E 458 REMARK 465 TRP E 459 REMARK 465 LEU E 460 REMARK 465 ALA E 461 REMARK 465 GLY E 462 REMARK 465 LEU E 463 REMARK 465 PHE E 464 REMARK 465 TYR E 465 REMARK 465 GLN E 466 REMARK 465 HIS E 467 REMARK 465 LYS E 468 REMARK 465 PHE E 469 REMARK 465 ASP E 470 REMARK 465 SER E 471 REMARK 465 SER E 472 REMARK 465 GLY E 473 REMARK 465 CYS E 474 REMARK 465 PRO E 475 REMARK 465 GLU E 476 REMARK 465 ARG E 477 REMARK 465 LEU E 478 REMARK 465 ALA E 479 REMARK 465 SER E 480 REMARK 465 CYS E 481 REMARK 465 GLY E 482 REMARK 465 SER E 483 REMARK 465 SER E 484 REMARK 465 GLY E 485 REMARK 465 CYS E 486 REMARK 465 TRP E 487 REMARK 465 HIS E 488 REMARK 465 TYR E 489 REMARK 465 VAL E 516 REMARK 465 GLY E 517 REMARK 465 THR E 518 REMARK 465 THR E 519 REMARK 465 ASP E 520 REMARK 465 ARG E 521 REMARK 465 SER E 522 REMARK 465 GLY E 523 REMARK 465 ALA E 524 REMARK 465 PRO E 525 REMARK 465 THR E 526 REMARK 465 TYR E 527 REMARK 465 SER E 528 REMARK 465 TRP E 529 REMARK 465 GLY E 530 REMARK 465 ALA E 531 REMARK 465 ASN E 532 REMARK 465 ASP E 533 REMARK 465 THR E 534 REMARK 465 ASP E 535 REMARK 465 VAL E 536 REMARK 465 PHE E 537 REMARK 465 VAL E 538 REMARK 465 LEU E 539 REMARK 465 ASN E 540 REMARK 465 ASN E 541 REMARK 465 THR E 542 REMARK 465 ARG E 543 REMARK 465 PRO E 544 REMARK 465 PRO E 545 REMARK 465 LEU E 546 REMARK 465 GLY E 547 REMARK 465 THR E 558 REMARK 465 GLY E 559 REMARK 465 PRO E 594 REMARK 465 THR E 595 REMARK 465 ASP E 596 REMARK 465 GLY E 597 REMARK 465 MET E 631 REMARK 465 TYR E 632 REMARK 465 VAL E 633 REMARK 465 GLY E 634 REMARK 465 GLY E 635 REMARK 465 VAL E 636 REMARK 465 GLU E 637 REMARK 465 HIS E 638 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C TRP E 549 O PHE E 550 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O MET L 4 NZ LYS L 188 2556 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE E 550 CB - CA - C ANGL. DEV. = 26.3 DEGREES REMARK 500 PHE E 550 N - CA - C ANGL. DEV. = -39.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU H 2 122.62 -36.80 REMARK 500 LYS H 43 -163.15 -110.86 REMARK 500 ASP H 56 92.31 -69.48 REMARK 500 ILE H 100 126.03 74.74 REMARK 500 THR H 100a -12.71 80.02 REMARK 500 ARG H 100c -9.60 68.78 REMARK 500 PRO H 126 -175.47 -66.30 REMARK 500 PRO H 147 -159.40 -84.79 REMARK 500 SER L 30 -123.12 41.91 REMARK 500 ALA L 51 -59.79 72.25 REMARK 500 SER L 67 111.30 -170.89 REMARK 500 ASN L 138 61.06 63.32 REMARK 500 GLU L 143 125.69 -39.35 REMARK 500 ALA L 144 149.00 -172.83 REMARK 500 ASN L 152 -0.40 61.54 REMARK 500 LYS L 169 -74.05 -108.89 REMARK 500 SER L 171 42.44 39.92 REMARK 500 THR L 172 -166.36 -104.71 REMARK 500 LYS E 500 -9.36 -59.58 REMARK 500 SER E 501 63.12 -111.35 REMARK 500 CYS E 503 105.06 -160.75 REMARK 500 TRP E 549 77.85 -116.62 REMARK 500 PRO E 567 -165.80 -101.64 REMARK 500 PRO E 568 105.09 -27.65 REMARK 500 SER E 599 -116.08 44.89 REMARK 500 PRO E 619 49.41 -84.05 REMARK 500 CYS E 620 -3.45 -142.22 REMARK 500 THR E 621 35.86 -94.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG H 81 0.19 SIDE CHAIN REMARK 500 ARG H 100c 0.08 SIDE CHAIN REMARK 500 ARG L 108 0.14 SIDE CHAIN REMARK 500 ARG L 209 0.11 SIDE CHAIN REMARK 500 ARG E 492 0.10 SIDE CHAIN REMARK 500 ARG E 630 0.29 SIDE CHAIN REMARK 500 ARG E 639 0.26 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9MSK H 1 215 PDB 9MSK 9MSK 1 215 DBREF 9MSK L 1 212 PDB 9MSK 9MSK 1 212 DBREF 9MSK E 432 645 PDB 9MSK 9MSK 432 645 SEQRES 1 H 223 GLN LEU GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 223 PRO SER GLU THR LEU SER LEU THR CYS ILE VAL SER GLY SEQRES 3 H 223 GLY SER ILE SER GLY TYR SER TRP ASN TRP ILE ARG GLN SEQRES 4 H 223 PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY ASN ILE PHE SEQRES 5 H 223 SER GLY GLY ASP ASP ALA ASN TYR ASN PRO SER LEU LYS SEQRES 6 H 223 SER ARG VAL THR LEU SER VAL ASP THR SER LYS ASN HIS SEQRES 7 H 223 PHE SER LEU ARG LEU SER SER VAL THR ALA ALA ASP THR SEQRES 8 H 223 ALA VAL TYR TYR CYS ALA ARG HIS SER ALA GLY PHE ILE SEQRES 9 H 223 THR GLY ARG TYR PHE GLU LEU TRP GLY GLN GLY ALA LEU SEQRES 10 H 223 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 223 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 223 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 223 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 223 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 223 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 223 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 223 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 H 223 PRO LYS SEQRES 1 L 212 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 212 SER LEU GLY ASP ARG VAL THR ILE THR CYS ARG ALA ASN SEQRES 3 L 212 GLN ASP ILE SER SER SER LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 212 PRO GLY LYS ALA PRO LYS PRO LEU ILE TYR TYR ALA SER SEQRES 5 L 212 ASN LEU GLU SER GLY VAL PRO SER ARG PHE ARG GLY SER SEQRES 6 L 212 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 212 GLN SER GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN TYR SEQRES 8 L 212 ASN SER ASP PRO LEU THR PHE GLY GLY GLY THR LYS VAL SEQRES 9 L 212 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 212 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 212 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ILE GLU SEQRES 12 L 212 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 212 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 212 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 212 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 212 VAL THR GLN GLY THR THR SER VAL THR LYS SER PHE ASN SEQRES 17 L 212 ARG GLY GLU CYS SEQRES 1 E 191 ALA ARG GLN LEU ILE ASN THR ASN GLY SER TRP HIS ILE SEQRES 2 E 191 ASN SER THR ALA LEU ASN CYS ASN GLU SER LEU ASN THR SEQRES 3 E 191 GLY TRP LEU ALA GLY LEU PHE TYR GLN HIS LYS PHE ASP SEQRES 4 E 191 SER SER GLY CYS PRO GLU ARG LEU ALA SER CYS GLY SER SEQRES 5 E 191 SER GLY CYS TRP HIS TYR PRO PRO ARG PRO CYS GLY ILE SEQRES 6 E 191 VAL PRO ALA LYS SER VAL CYS GLY PRO VAL TYR CYS PHE SEQRES 7 E 191 THR PRO SER PRO VAL VAL VAL GLY THR THR ASP ARG SER SEQRES 8 E 191 GLY ALA PRO THR TYR SER TRP GLY ALA ASN ASP THR ASP SEQRES 9 E 191 VAL PHE VAL LEU ASN ASN THR ARG PRO PRO LEU GLY ASN SEQRES 10 E 191 TRP PHE GLY CYS THR TRP MET ASN SER THR GLY PHE THR SEQRES 11 E 191 LYS VAL CYS GLY ALA PRO PRO GLY GLY PRO THR ASP GLY SEQRES 12 E 191 GLY SER GLY PRO TRP ILE THR PRO ARG CYS MET VAL ASP SEQRES 13 E 191 TYR PRO TYR ARG LEU TRP HIS TYR PRO CYS THR ILE ASN SEQRES 14 E 191 TYR THR ILE PHE LYS VAL ARG MET TYR VAL GLY GLY VAL SEQRES 15 E 191 GLU HIS ARG LEU GLU ALA ALA CYS ASN HET NAG E 701 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG C8 H15 N O6 FORMUL 5 HOH *10(H2 O) HELIX 1 AA1 THR H 83 THR H 87 5 5 HELIX 2 AA2 SER H 156 ALA H 158 5 3 HELIX 3 AA3 SER H 187 LEU H 189 5 3 HELIX 4 AA4 LYS H 201 ASN H 204 5 4 HELIX 5 AA5 GLN L 79 PHE L 83 5 5 HELIX 6 AA6 SER L 121 SER L 127 1 7 HELIX 7 AA7 LYS L 183 GLU L 187 1 5 HELIX 8 AA8 TYR E 613 TYR E 618 1 6 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 AA1 4 HIS H 77 LEU H 82 -1 O PHE H 78 N CYS H 22 SHEET 4 AA1 4 SER H 70 ASP H 72 -1 N ASP H 72 O HIS H 77 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 ALA H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 HIS H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 SER H 33 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 AA2 6 GLU H 46 PHE H 52 -1 O ILE H 51 N TRP H 34 SHEET 6 AA2 6 ASN H 58 TYR H 59 -1 O ASN H 58 N ASN H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 ALA H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 HIS H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 4 LEU H 102 TRP H 103 -1 O LEU H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 PRO H 123 0 SHEET 2 AA4 4 CYS H 140 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 3 THR H 135 ALA H 137 0 SHEET 2 AA5 3 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 3 AA5 3 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 LYS H 210 -1 O THR H 205 N HIS H 200 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 GLU L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 GLY L 66 -1 N SER L 65 O THR L 72 SHEET 1 AA8 6 SER L 10 SER L 14 0 SHEET 2 AA8 6 THR L 102 LYS L 107 1 O LYS L 107 N ALA L 13 SHEET 3 AA8 6 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 AA8 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 SER L 14 0 SHEET 2 AA9 4 THR L 102 LYS L 107 1 O LYS L 107 N ALA L 13 SHEET 3 AA9 4 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB2 4 ALA L 153 GLN L 155 0 SHEET 2 AB2 4 LYS L 145 VAL L 150 -1 N TRP L 148 O GLN L 155 SHEET 3 AB2 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB2 4 SER L 202 ASN L 208 -1 O LYS L 205 N CYS L 194 SHEET 1 AB3 4 PRO E 513 VAL E 514 0 SHEET 2 AB3 4 TYR E 507 PHE E 509 -1 N CYS E 508 O VAL E 514 SHEET 3 AB3 4 CYS E 552 MET E 555 -1 O THR E 553 N TYR E 507 SHEET 4 AB3 4 THR E 561 VAL E 563 -1 O LYS E 562 N TRP E 554 SHEET 1 AB4 3 CYS E 607 VAL E 609 0 SHEET 2 AB4 3 GLU E 641 CYS E 644 -1 O ALA E 643 N MET E 608 SHEET 3 AB4 3 THR E 625 LYS E 628 -1 N THR E 625 O CYS E 644 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.08 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.02 SSBOND 5 CYS E 494 CYS E 564 1555 1555 2.03 SSBOND 6 CYS E 508 CYS E 552 1555 1555 1.89 SSBOND 7 CYS E 607 CYS E 644 1555 1555 2.02 LINK ND2 ASN E 623 C1 NAG E 701 1555 1555 1.51 CISPEP 1 PHE H 146 PRO H 147 0 -9.27 CISPEP 2 GLU H 148 PRO H 149 0 0.62 CISPEP 3 SER L 7 PRO L 8 0 3.31 CISPEP 4 ASP L 94 PRO L 95 0 10.43 CISPEP 5 TYR L 140 PRO L 141 0 0.14 CRYST1 79.541 73.949 122.451 90.00 90.44 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012572 0.000000 0.000097 0.00000 SCALE2 0.000000 0.013523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008167 0.00000 CONECT 161 727 CONECT 727 161 CONECT 1098 1512 CONECT 1512 1098 CONECT 1822 2328 CONECT 2328 1822 CONECT 2670 3146 CONECT 3146 2670 CONECT 3319 3592 CONECT 3414 3509 CONECT 3509 3414 CONECT 3592 3319 CONECT 3697 3951 CONECT 3842 3961 CONECT 3951 3697 CONECT 3961 3842 3962 3972 CONECT 3962 3961 3963 3969 CONECT 3963 3962 3964 3970 CONECT 3964 3963 3965 3971 CONECT 3965 3964 3966 3972 CONECT 3966 3965 3973 CONECT 3967 3968 3969 3974 CONECT 3968 3967 CONECT 3969 3962 3967 CONECT 3970 3963 CONECT 3971 3964 CONECT 3972 3961 3965 CONECT 3973 3966 CONECT 3974 3967 MASTER 430 0 1 8 53 0 0 6 3981 3 29 50 END