HEADER DNA BINDING PROTEIN/DNA 17-JAN-25 9MX9 TITLE CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF FLI1 (F362A) IN COMPLEX TITLE 2 WITH A DNA CONTAINING TWO CONTIGUOUS GGAA SITES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRIEND LEUKEMIA INTEGRATION 1 TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN (RESIDUES 259-399); COMPND 5 SYNONYM: PROTO-ONCOGENE FLI-1,TRANSCRIPTION FACTOR ERGB; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*GP*AP*CP*CP*GP*GP*AP*AP*GP*GP*AP*AP*GP*TP*G)- COMPND 10 3'); COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*AP*CP*TP*TP*CP*CP*TP*TP*CP*CP*GP*GP*TP*C)- COMPND 15 3'); COMPND 16 CHAIN: F; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FLI1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS EWING SARCOMA, TRANSCRIPTION FACTOR, ONCOGENESIS, BONE TUMOR, DRUG KEYWDS 2 TARGET, DEREGULATION, DNA BINDING PROTEIN-DNA COMPLEX, DNA BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.HOU,O.V.TSODIKOV REVDAT 2 23-APR-25 9MX9 1 JRNL REVDAT 1 12-MAR-25 9MX9 0 JRNL AUTH C.HOU,O.V.TSODIKOV JRNL TITL STRUCTURE AND COOPERATIVE FORMATION OF A FLI1 FILAMENT ON JRNL TITL 2 CONTIGUOUS GGAA DNA SITES. JRNL REF NUCLEIC ACIDS RES. V. 53 2025 JRNL REFN ESSN 1362-4962 JRNL PMID 40131773 JRNL DOI 10.1093/NAR/GKAF205 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 599 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 767 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1500 REMARK 3 NUCLEIC ACID ATOMS : 608 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.55000 REMARK 3 B22 (A**2) : -1.55000 REMARK 3 B33 (A**2) : 3.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.511 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.288 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.143 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2218 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1758 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3119 ; 1.180 ; 1.486 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4054 ; 1.214 ; 1.869 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 181 ; 5.830 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;33.574 ;21.648 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 270 ;18.193 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.235 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 278 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2111 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 552 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 730 ; 2.548 ; 5.383 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 729 ; 2.539 ; 5.379 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 909 ; 4.325 ; 8.062 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 910 ; 4.322 ; 8.067 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1487 ; 2.562 ; 5.076 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1486 ; 2.563 ; 5.076 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2209 ; 4.253 ; 7.556 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2688 ; 6.221 ;52.339 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2687 ; 6.158 ;52.295 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9MX9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1000292004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11403 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5JVT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 0.1 M SODIUM REMARK 280 CACODYLATE, PH 6.5, 18% PEG8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 59.50000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 59.50000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.65800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.82900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.50000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.48700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.48700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.50000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.82900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 59.50000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 59.50000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.65800 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 59.50000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 59.50000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.65800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 59.50000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 71.48700 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 59.50000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 23.82900 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.50000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 23.82900 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 59.50000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 71.48700 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 59.50000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 59.50000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 47.65800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 255 REMARK 465 PRO A 256 REMARK 465 HIS A 257 REMARK 465 MET A 258 REMARK 465 GLN A 259 REMARK 465 PRO A 260 REMARK 465 ASP A 261 REMARK 465 PRO A 262 REMARK 465 TYR A 263 REMARK 465 GLN A 264 REMARK 465 ILE A 265 REMARK 465 LEU A 266 REMARK 465 GLY A 267 REMARK 465 PRO A 268 REMARK 465 THR A 269 REMARK 465 SER A 270 REMARK 465 SER A 271 REMARK 465 ARG A 272 REMARK 465 LEU A 273 REMARK 465 ALA A 274 REMARK 465 ASN A 275 REMARK 465 PRO A 276 REMARK 465 GLY A 277 REMARK 465 SER A 278 REMARK 465 HIS A 372 REMARK 465 PRO A 373 REMARK 465 THR A 374 REMARK 465 GLU A 375 REMARK 465 SER A 376 REMARK 465 SER A 377 REMARK 465 MET A 378 REMARK 465 TYR A 379 REMARK 465 LYS A 380 REMARK 465 TYR A 381 REMARK 465 PRO A 382 REMARK 465 SER A 383 REMARK 465 ASP A 384 REMARK 465 ILE A 385 REMARK 465 SER A 386 REMARK 465 TYR A 387 REMARK 465 MET A 388 REMARK 465 PRO A 389 REMARK 465 SER A 390 REMARK 465 TYR A 391 REMARK 465 HIS A 392 REMARK 465 ALA A 393 REMARK 465 HIS A 394 REMARK 465 GLN A 395 REMARK 465 GLN A 396 REMARK 465 LYS A 397 REMARK 465 VAL A 398 REMARK 465 ASN A 399 REMARK 465 GLY D 255 REMARK 465 PRO D 256 REMARK 465 HIS D 257 REMARK 465 MET D 258 REMARK 465 GLN D 259 REMARK 465 PRO D 260 REMARK 465 ASP D 261 REMARK 465 PRO D 262 REMARK 465 TYR D 263 REMARK 465 GLN D 264 REMARK 465 ILE D 265 REMARK 465 LEU D 266 REMARK 465 GLY D 267 REMARK 465 PRO D 268 REMARK 465 THR D 269 REMARK 465 SER D 270 REMARK 465 SER D 271 REMARK 465 ARG D 272 REMARK 465 LEU D 273 REMARK 465 ALA D 274 REMARK 465 ASN D 275 REMARK 465 PRO D 276 REMARK 465 GLY D 277 REMARK 465 SER D 278 REMARK 465 GLY D 279 REMARK 465 GLN D 280 REMARK 465 PRO D 371 REMARK 465 HIS D 372 REMARK 465 PRO D 373 REMARK 465 THR D 374 REMARK 465 GLU D 375 REMARK 465 SER D 376 REMARK 465 SER D 377 REMARK 465 MET D 378 REMARK 465 TYR D 379 REMARK 465 LYS D 380 REMARK 465 TYR D 381 REMARK 465 PRO D 382 REMARK 465 SER D 383 REMARK 465 ASP D 384 REMARK 465 ILE D 385 REMARK 465 SER D 386 REMARK 465 TYR D 387 REMARK 465 MET D 388 REMARK 465 PRO D 389 REMARK 465 SER D 390 REMARK 465 TYR D 391 REMARK 465 HIS D 392 REMARK 465 ALA D 393 REMARK 465 HIS D 394 REMARK 465 GLN D 395 REMARK 465 GLN D 396 REMARK 465 LYS D 397 REMARK 465 VAL D 398 REMARK 465 ASN D 399 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 303 CD OE1 OE2 REMARK 470 LYS A 354 CD CE NZ REMARK 470 GLU D 303 CD OE1 OE2 REMARK 470 LYS D 354 CD CE NZ REMARK 470 DC F 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 280 -48.17 76.24 REMARK 500 GLU A 303 -61.16 -124.12 REMARK 500 ASN A 346 19.57 57.88 REMARK 500 PHE D 360 79.04 -117.24 REMARK 500 LEU D 369 74.92 -103.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 315 OD2 REMARK 620 2 HOH A 501 O 62.9 REMARK 620 3 HOH A 502 O 83.0 82.5 REMARK 620 4 HOH D 501 O 111.8 149.7 127.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 344 OD2 REMARK 620 2 HOH D 501 O 85.6 REMARK 620 N 1 DBREF 9MX9 A 259 399 UNP Q01543 FLI1_HUMAN 259 399 DBREF 9MX9 D 259 399 UNP Q01543 FLI1_HUMAN 259 399 DBREF 9MX9 E 1 15 PDB 9MX9 9MX9 1 15 DBREF 9MX9 F 1 15 PDB 9MX9 9MX9 1 15 SEQADV 9MX9 GLY A 255 UNP Q01543 EXPRESSION TAG SEQADV 9MX9 PRO A 256 UNP Q01543 EXPRESSION TAG SEQADV 9MX9 HIS A 257 UNP Q01543 EXPRESSION TAG SEQADV 9MX9 MET A 258 UNP Q01543 EXPRESSION TAG SEQADV 9MX9 ALA A 362 UNP Q01543 PHE 362 ENGINEERED MUTATION SEQADV 9MX9 GLY D 255 UNP Q01543 EXPRESSION TAG SEQADV 9MX9 PRO D 256 UNP Q01543 EXPRESSION TAG SEQADV 9MX9 HIS D 257 UNP Q01543 EXPRESSION TAG SEQADV 9MX9 MET D 258 UNP Q01543 EXPRESSION TAG SEQADV 9MX9 ALA D 362 UNP Q01543 PHE 362 ENGINEERED MUTATION SEQRES 1 A 145 GLY PRO HIS MET GLN PRO ASP PRO TYR GLN ILE LEU GLY SEQRES 2 A 145 PRO THR SER SER ARG LEU ALA ASN PRO GLY SER GLY GLN SEQRES 3 A 145 ILE GLN LEU TRP GLN PHE LEU LEU GLU LEU LEU SER ASP SEQRES 4 A 145 SER ALA ASN ALA SER CYS ILE THR TRP GLU GLY THR ASN SEQRES 5 A 145 GLY GLU PHE LYS MET THR ASP PRO ASP GLU VAL ALA ARG SEQRES 6 A 145 ARG TRP GLY GLU ARG LYS SER LYS PRO ASN MET ASN TYR SEQRES 7 A 145 ASP LYS LEU SER ARG ALA LEU ARG TYR TYR TYR ASP LYS SEQRES 8 A 145 ASN ILE MET THR LYS VAL HIS GLY LYS ARG TYR ALA TYR SEQRES 9 A 145 LYS PHE ASP ALA HIS GLY ILE ALA GLN ALA LEU GLN PRO SEQRES 10 A 145 HIS PRO THR GLU SER SER MET TYR LYS TYR PRO SER ASP SEQRES 11 A 145 ILE SER TYR MET PRO SER TYR HIS ALA HIS GLN GLN LYS SEQRES 12 A 145 VAL ASN SEQRES 1 D 145 GLY PRO HIS MET GLN PRO ASP PRO TYR GLN ILE LEU GLY SEQRES 2 D 145 PRO THR SER SER ARG LEU ALA ASN PRO GLY SER GLY GLN SEQRES 3 D 145 ILE GLN LEU TRP GLN PHE LEU LEU GLU LEU LEU SER ASP SEQRES 4 D 145 SER ALA ASN ALA SER CYS ILE THR TRP GLU GLY THR ASN SEQRES 5 D 145 GLY GLU PHE LYS MET THR ASP PRO ASP GLU VAL ALA ARG SEQRES 6 D 145 ARG TRP GLY GLU ARG LYS SER LYS PRO ASN MET ASN TYR SEQRES 7 D 145 ASP LYS LEU SER ARG ALA LEU ARG TYR TYR TYR ASP LYS SEQRES 8 D 145 ASN ILE MET THR LYS VAL HIS GLY LYS ARG TYR ALA TYR SEQRES 9 D 145 LYS PHE ASP ALA HIS GLY ILE ALA GLN ALA LEU GLN PRO SEQRES 10 D 145 HIS PRO THR GLU SER SER MET TYR LYS TYR PRO SER ASP SEQRES 11 D 145 ILE SER TYR MET PRO SER TYR HIS ALA HIS GLN GLN LYS SEQRES 12 D 145 VAL ASN SEQRES 1 E 15 DG DA DC DC DG DG DA DA DG DG DA DA DG SEQRES 2 E 15 DT DG SEQRES 1 F 15 DC DA DC DT DT DC DC DT DT DC DC DG DG SEQRES 2 F 15 DT DC HET CA A 401 1 HET CA D 401 1 HET CA E 101 1 HET CA F 101 1 HET CA F 102 1 HETNAM CA CALCIUM ION FORMUL 5 CA 5(CA 2+) FORMUL 10 HOH *3(H2 O) HELIX 1 AA1 GLN A 282 ASP A 293 1 12 HELIX 2 AA2 ASP A 313 LYS A 325 1 13 HELIX 3 AA3 ASN A 331 TYR A 342 1 12 HELIX 4 AA4 ASP A 361 GLN A 370 1 10 HELIX 5 AA5 GLN D 282 ASP D 293 1 12 HELIX 6 AA6 SER D 294 ALA D 297 5 4 HELIX 7 AA7 ASP D 313 LYS D 325 1 13 HELIX 8 AA8 ASN D 331 TYR D 341 1 11 HELIX 9 AA9 ASP D 361 LEU D 369 1 9 SHEET 1 AA1 4 THR A 301 TRP A 302 0 SHEET 2 AA1 4 GLU A 308 LYS A 310 -1 O LYS A 310 N THR A 301 SHEET 3 AA1 4 ALA A 357 PHE A 360 -1 O TYR A 358 N PHE A 309 SHEET 4 AA1 4 MET A 348 LYS A 350 -1 N THR A 349 O LYS A 359 SHEET 1 AA2 4 THR D 301 TRP D 302 0 SHEET 2 AA2 4 GLU D 308 LYS D 310 -1 O LYS D 310 N THR D 301 SHEET 3 AA2 4 ALA D 357 LYS D 359 -1 O TYR D 358 N PHE D 309 SHEET 4 AA2 4 THR D 349 LYS D 350 -1 N THR D 349 O LYS D 359 LINK OD2 ASP A 315 CA CA A 401 1555 1555 3.00 LINK CA CA A 401 O HOH A 501 1555 1555 2.80 LINK CA CA A 401 O HOH A 502 1555 1555 2.32 LINK CA CA A 401 O HOH D 501 1555 1555 2.38 LINK OD2 ASP D 344 CA CA D 401 1555 1555 3.01 LINK CA CA D 401 O HOH D 501 1555 1555 2.84 LINK O6 DG E 1 CA CA E 101 1555 1555 2.97 LINK O6 DG F 12 CA CA F 101 1555 1555 2.98 LINK O6 DG F 13 CA CA F 102 1555 1555 3.11 CRYST1 119.000 119.000 95.316 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008403 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008403 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010491 0.00000 TER 761 PRO A 371 TER 1502 GLN D 370 TER 1817 DG E 15 TER 2112 DC F 15 HETATM 2113 CA CA A 401 34.146 -3.979 21.669 1.00 90.39 CA HETATM 2114 CA CA D 401 35.089 -2.103 18.677 1.00 88.84 CA HETATM 2115 CA CA E 101 37.265 20.351 23.194 1.00 94.46 CA HETATM 2116 CA CA F 101 32.682 15.362 17.715 1.00 84.73 CA HETATM 2117 CA CA F 102 33.116 17.022 20.741 1.00 96.50 CA HETATM 2118 O HOH A 501 32.652 -4.560 23.964 1.00 55.62 O HETATM 2119 O HOH A 502 32.038 -3.646 20.752 1.00 50.61 O HETATM 2120 O HOH D 501 36.245 -3.896 20.550 1.00 67.10 O CONECT 288 2113 CONECT 1294 2114 CONECT 1516 2115 CONECT 2045 2116 CONECT 2067 2117 CONECT 2113 288 2118 2119 2120 CONECT 2114 1294 2120 CONECT 2115 1516 CONECT 2116 2045 CONECT 2117 2067 CONECT 2118 2113 CONECT 2119 2113 CONECT 2120 2113 2114 MASTER 452 0 5 9 8 0 0 6 2116 4 13 28 END