HEADER TRANSFERASE 21-JAN-25 9MYE TITLE C28 POLYMERASE INCORPORATING RNA, N+1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TO POL; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TEMPLATE; COMPND 9 CHAIN: T; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PRIMER; COMPND 13 CHAIN: P; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS GORGONARIUS; SOURCE 3 ORGANISM_TAXID: 71997; SOURCE 4 GENE: POL, POLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS ENZYME ENGINEERING, B-FAMILY POLYMERASE, RNA POLYMERASE, POLYMERASE, KEYWDS 2 BINARY COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HAJJAR,G.K.KO,E.J.HO,N.CHIM,J.C.CHAPUT REVDAT 3 21-JAN-26 9MYE 1 JRNL REVDAT 2 14-JAN-26 9MYE 1 JRNL REVDAT 1 17-DEC-25 9MYE 0 JRNL AUTH E.L.MEDINA,V.A.MAOLA,M.HAJJAR,G.K.KO,E.J.HO,A.R.HORTON, JRNL AUTH 2 N.CHIM,J.C.CHAPUT JRNL TITL RAPID EVOLUTION OF A HIGHLY EFFICIENT RNA POLYMERASE BY JRNL TITL 2 HOMOLOGOUS RECOMBINATION. JRNL REF NAT.CHEM.BIOL. 2026 JRNL REFN ESSN 1552-4469 JRNL PMID 41501182 JRNL DOI 10.1038/S41589-025-02124-7 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1-4487-000 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 44720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 64.0300 - 4.7800 1.00 4547 212 0.2085 0.2072 REMARK 3 2 4.7800 - 3.8000 1.00 4348 204 0.1865 0.2313 REMARK 3 3 3.8000 - 3.3200 1.00 4330 203 0.2088 0.2544 REMARK 3 4 3.3200 - 3.0100 1.00 4280 199 0.2394 0.2848 REMARK 3 5 3.0100 - 2.8000 0.96 4117 194 0.3064 0.3451 REMARK 3 6 2.8000 - 2.6300 0.97 4117 191 0.3365 0.3546 REMARK 3 7 2.6300 - 2.5000 1.00 4275 201 0.3042 0.3425 REMARK 3 8 2.5000 - 2.3900 1.00 4243 197 0.3043 0.3494 REMARK 3 9 2.3900 - 2.3000 1.00 4239 199 0.3152 0.3456 REMARK 3 10 2.3000 - 2.2200 1.00 4226 198 0.3408 0.3955 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1856 4.8164 37.3743 REMARK 3 T TENSOR REMARK 3 T11: 0.3347 T22: 0.2799 REMARK 3 T33: 0.2531 T12: -0.0038 REMARK 3 T13: 0.0444 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.8235 L22: 2.3960 REMARK 3 L33: 2.4372 L12: 1.6188 REMARK 3 L13: 1.1307 L23: 1.6147 REMARK 3 S TENSOR REMARK 3 S11: 0.2396 S12: -0.1335 S13: -0.0647 REMARK 3 S21: 0.3677 S22: -0.1090 S23: -0.0065 REMARK 3 S31: 0.2888 S32: -0.1629 S33: 0.0032 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4720 11.8911 41.1022 REMARK 3 T TENSOR REMARK 3 T11: 0.4745 T22: 0.4817 REMARK 3 T33: 0.4452 T12: -0.0172 REMARK 3 T13: 0.0251 T23: -0.0528 REMARK 3 L TENSOR REMARK 3 L11: 1.1682 L22: 1.2747 REMARK 3 L33: 1.2957 L12: -0.9061 REMARK 3 L13: -0.5360 L23: 0.5673 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: 0.0062 S13: -0.3205 REMARK 3 S21: 0.2723 S22: 0.0255 S23: -0.3059 REMARK 3 S31: 0.1235 S32: 0.5313 S33: -0.0007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 531 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0571 6.9924 12.2566 REMARK 3 T TENSOR REMARK 3 T11: 0.3175 T22: 0.2592 REMARK 3 T33: 0.3303 T12: -0.0476 REMARK 3 T13: -0.0084 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 0.8143 L22: 0.9647 REMARK 3 L33: 2.0770 L12: 0.1044 REMARK 3 L13: -0.0128 L23: 0.6655 REMARK 3 S TENSOR REMARK 3 S11: -0.0960 S12: 0.0961 S13: 0.1354 REMARK 3 S21: -0.2477 S22: 0.0961 S23: -0.0716 REMARK 3 S31: -0.3331 S32: 0.1416 S33: 0.0026 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 532 THROUGH 747 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1389 9.7023 17.2015 REMARK 3 T TENSOR REMARK 3 T11: 0.4095 T22: 0.5415 REMARK 3 T33: 0.7573 T12: -0.1296 REMARK 3 T13: -0.0170 T23: -0.1239 REMARK 3 L TENSOR REMARK 3 L11: 2.4500 L22: 1.2994 REMARK 3 L33: 1.3210 L12: 0.0154 REMARK 3 L13: 0.9648 L23: 0.6698 REMARK 3 S TENSOR REMARK 3 S11: -0.3462 S12: -0.0170 S13: 0.6341 REMARK 3 S21: -0.0847 S22: 0.3545 S23: -0.5411 REMARK 3 S31: -0.3179 S32: 0.3057 S33: -0.0080 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'T' AND (RESID 5 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6859 -4.7467 16.9797 REMARK 3 T TENSOR REMARK 3 T11: 0.4763 T22: 0.6460 REMARK 3 T33: 0.6289 T12: 0.0224 REMARK 3 T13: -0.0316 T23: -0.1650 REMARK 3 L TENSOR REMARK 3 L11: 0.3303 L22: 0.4646 REMARK 3 L33: 0.3753 L12: 0.2945 REMARK 3 L13: 0.1508 L23: 0.4084 REMARK 3 S TENSOR REMARK 3 S11: -0.1658 S12: -0.3372 S13: 0.1062 REMARK 3 S21: 0.4214 S22: 0.3133 S23: -0.5065 REMARK 3 S31: 0.3629 S32: 0.2764 S33: -0.0046 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 2 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8845 -6.1741 17.0112 REMARK 3 T TENSOR REMARK 3 T11: 0.3527 T22: 0.7478 REMARK 3 T33: 0.7867 T12: 0.0055 REMARK 3 T13: 0.0451 T23: -0.1868 REMARK 3 L TENSOR REMARK 3 L11: 0.1075 L22: 0.6365 REMARK 3 L33: 1.2413 L12: -0.2025 REMARK 3 L13: -0.3013 L23: 0.8755 REMARK 3 S TENSOR REMARK 3 S11: -0.1723 S12: -0.1338 S13: 0.0577 REMARK 3 S21: 0.3738 S22: 0.1695 S23: -0.5540 REMARK 3 S31: 0.4610 S32: 0.3903 S33: -0.0645 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 12 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9193 8.0168 9.2139 REMARK 3 T TENSOR REMARK 3 T11: 0.4938 T22: 0.5312 REMARK 3 T33: 0.5127 T12: -0.0868 REMARK 3 T13: -0.0179 T23: -0.0621 REMARK 3 L TENSOR REMARK 3 L11: 0.0274 L22: 0.0930 REMARK 3 L33: 0.0722 L12: 0.0502 REMARK 3 L13: -0.0422 L23: -0.0785 REMARK 3 S TENSOR REMARK 3 S11: -0.1085 S12: -0.0555 S13: -0.0919 REMARK 3 S21: -0.0529 S22: -0.1136 S23: 0.0263 REMARK 3 S31: -0.1989 S32: 0.1603 S33: 0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9MYE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1000291931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS, POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45059 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 64.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.07752 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.81700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS II G10 [12.5%(W/V) PEG 4K, REMARK 280 20%(V/V) 1,2,6-HEXANETRIOL, 0.02M OF EACH AMINO-ACID II, 0.1M REMARK 280 GLYGLY/AMPD PH 8.5], VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.98500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.11500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.17000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.11500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.98500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.17000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 748 REMARK 465 SER A 749 REMARK 465 HIS A 750 REMARK 465 TYR A 751 REMARK 465 ARG A 752 REMARK 465 LYS A 753 REMARK 465 GLU A 754 REMARK 465 ASP A 755 REMARK 465 LEU A 756 REMARK 465 ARG A 757 REMARK 465 TYR A 758 REMARK 465 GLN A 759 REMARK 465 LYS A 760 REMARK 465 THR A 761 REMARK 465 ARG A 762 REMARK 465 GLN A 763 REMARK 465 VAL A 764 REMARK 465 GLY A 765 REMARK 465 LEU A 766 REMARK 465 SER A 767 REMARK 465 ALA A 768 REMARK 465 TRP A 769 REMARK 465 LEU A 770 REMARK 465 LYS A 771 REMARK 465 PRO A 772 REMARK 465 LYS A 773 REMARK 465 THR A 774 REMARK 465 DA T 1 REMARK 465 DA T 2 REMARK 465 DA T 3 REMARK 465 DC T 4 REMARK 465 DG T 18 REMARK 465 DC P 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC P 10 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 132 79.63 -110.49 REMARK 500 GLU A 151 -130.59 50.60 REMARK 500 PHE A 152 112.74 -165.54 REMARK 500 ASP A 164 -162.39 -129.88 REMARK 500 PHE A 214 -77.69 -148.04 REMARK 500 GLU A 437 -56.22 60.82 REMARK 500 ALA A 470 44.12 -103.53 REMARK 500 TRP A 505 53.59 -93.58 REMARK 500 LEU A 538 -66.65 -94.55 REMARK 500 THR A 542 -116.50 56.77 REMARK 500 LYS A 593 -5.66 69.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 901 DISTANCE = 5.98 ANGSTROMS DBREF 9MYE A 1 774 UNP P56689 DPOL_THEGO 1 773 DBREF 9MYE T 1 18 PDB 9MYE 9MYE 1 18 DBREF 9MYE P 1 12 PDB 9MYE 9MYE 1 12 SEQADV 9MYE ALA A 5 UNP P56689 THR 5 CONFLICT SEQADV 9MYE ILE A 15 UNP P56689 VAL 15 CONFLICT SEQADV 9MYE VAL A 28 UNP P56689 ILE 28 CONFLICT SEQADV 9MYE GLU A 29 UNP P56689 ASP 29 CONFLICT SEQADV 9MYE ARG A 35 UNP P56689 GLU 35 CONFLICT SEQADV 9MYE ASN A 88 UNP P56689 THR 88 CONFLICT SEQADV 9MYE GLN A 93 UNP P56689 VAL 93 CONFLICT SEQADV 9MYE ARG A 99 UNP P56689 LYS 99 CONFLICT SEQADV 9MYE ARG A 101 UNP P56689 LYS 101 CONFLICT SEQADV 9MYE ALA A 102 UNP P56689 GLU 102 CONFLICT SEQADV 9MYE THR A 136 UNP P56689 LYS 136 CONFLICT SEQADV 9MYE ALA A 141 UNP P56689 ASP 141 CONFLICT SEQADV 9MYE ALA A 143 UNP P56689 GLU 143 CONFLICT SEQADV 9MYE GLY A 153 UNP P56689 ALA 153 CONFLICT SEQADV 9MYE THR A 154 UNP P56689 GLU 154 CONFLICT SEQADV 9MYE GLY A 165 UNP P56689 GLU 165 CONFLICT SEQADV 9MYE SER A 166 UNP P56689 GLU 166 CONFLICT SEQADV 9MYE GLU A 167 UNP P56689 GLY 167 CONFLICT SEQADV 9MYE LYS A 175 UNP P56689 ASN 175 CONFLICT SEQADV 9MYE ARG A 196 UNP P56689 LYS 196 CONFLICT SEQADV 9MYE ARG A 199 UNP P56689 LYS 199 CONFLICT SEQADV 9MYE CYS A 223 UNP P56689 SER 223 CONFLICT SEQADV 9MYE GLU A 225 UNP P56689 LYS 225 CONFLICT SEQADV 9MYE ILE A 228 UNP P56689 VAL 228 CONFLICT SEQADV 9MYE THR A 231 UNP P56689 ILE 231 CONFLICT SEQADV 9MYE ASP A 235 UNP P56689 GLU 235 CONFLICT SEQADV 9MYE LEU A 327 UNP P56689 PHE 327 CONFLICT SEQADV 9MYE ILE A 337 UNP P56689 VAL 337 CONFLICT SEQADV 9MYE TYR A 377 UNP P56689 LEU 377 CONFLICT SEQADV 9MYE GLU A 378 UNP P56689 ALA 378 CONFLICT SEQADV 9MYE LEU A 381 UNP P56689 INSERTION SEQADV 9MYE LYS A 395 UNP P56689 ARG 394 CONFLICT SEQADV 9MYE GLY A 400 UNP P56689 ASN 399 CONFLICT SEQADV 9MYE LEU A 401 UNP P56689 ILE 400 CONFLICT SEQADV 9MYE SER A 403 UNP P56689 TYR 402 CONFLICT SEQADV 9MYE GLY A 410 UNP P56689 TYR 409 CONFLICT SEQADV 9MYE ARG A 430 UNP P56689 GLU 429 CONFLICT SEQADV 9MYE GLU A 437 UNP P56689 GLN 436 CONFLICT SEQADV 9MYE LEU A 486 UNP P56689 ALA 485 CONFLICT SEQADV 9MYE LYS A 665 UNP P56689 GLU 664 CONFLICT SEQADV 9MYE VAL A 692 UNP P56689 ILE 691 CONFLICT SEQADV 9MYE THR A 724 UNP P56689 ALA 723 CONFLICT SEQADV 9MYE SER A 749 UNP P56689 PHE 748 CONFLICT SEQADV 9MYE HIS A 750 UNP P56689 GLY 749 CONFLICT SEQADV 9MYE SER A 767 UNP P56689 GLY 766 CONFLICT SEQRES 1 A 774 MET ILE LEU ASP ALA ASP TYR ILE THR GLU ASP GLY LYS SEQRES 2 A 774 PRO ILE ILE ARG ILE PHE LYS LYS GLU ASN GLY GLU PHE SEQRES 3 A 774 LYS VAL GLU TYR ASP ARG ASN PHE ARG PRO TYR ILE TYR SEQRES 4 A 774 ALA LEU LEU LYS ASP ASP SER ALA ILE GLU ASP VAL LYS SEQRES 5 A 774 LYS ILE THR ALA GLU ARG HIS GLY THR THR VAL ARG VAL SEQRES 6 A 774 VAL ARG ALA GLU LYS VAL LYS LYS LYS PHE LEU GLY ARG SEQRES 7 A 774 PRO ILE GLU VAL TRP LYS LEU TYR PHE ASN HIS PRO GLN SEQRES 8 A 774 ASP GLN PRO ALA ILE ARG ASP ARG ILE ARG ALA HIS PRO SEQRES 9 A 774 ALA VAL VAL ASP ILE TYR GLU TYR ASP ILE PRO PHE ALA SEQRES 10 A 774 LYS ARG TYR LEU ILE ASP LYS GLY LEU ILE PRO MET GLU SEQRES 11 A 774 GLY ASP GLU GLU LEU THR MET LEU ALA PHE ALA ILE ALA SEQRES 12 A 774 THR LEU TYR HIS GLU GLY GLU GLU PHE GLY THR GLY PRO SEQRES 13 A 774 ILE LEU MET ILE SER TYR ALA ASP GLY SER GLU ALA ARG SEQRES 14 A 774 VAL ILE THR TRP LYS LYS ILE ASP LEU PRO TYR VAL ASP SEQRES 15 A 774 VAL VAL SER THR GLU LYS GLU MET ILE LYS ARG PHE LEU SEQRES 16 A 774 ARG VAL VAL ARG GLU LYS ASP PRO ASP VAL LEU ILE THR SEQRES 17 A 774 TYR ASN GLY ASP ASN PHE ASP PHE ALA TYR LEU LYS LYS SEQRES 18 A 774 ARG CYS GLU GLU LEU GLY ILE LYS PHE THR LEU GLY ARG SEQRES 19 A 774 ASP GLY SER GLU PRO LYS ILE GLN ARG MET GLY ASP ARG SEQRES 20 A 774 PHE ALA VAL GLU VAL LYS GLY ARG ILE HIS PHE ASP LEU SEQRES 21 A 774 TYR PRO VAL ILE ARG ARG THR ILE ASN LEU PRO THR TYR SEQRES 22 A 774 THR LEU GLU ALA VAL TYR GLU ALA ILE PHE GLY GLN PRO SEQRES 23 A 774 LYS GLU LYS VAL TYR ALA GLU GLU ILE ALA GLN ALA TRP SEQRES 24 A 774 GLU THR GLY GLU GLY LEU GLU ARG VAL ALA ARG TYR SER SEQRES 25 A 774 MET GLU ASP ALA LYS VAL THR TYR GLU LEU GLY LYS GLU SEQRES 26 A 774 PHE LEU PRO MET GLU ALA GLN LEU SER ARG LEU ILE GLY SEQRES 27 A 774 GLN SER LEU TRP ASP VAL SER ARG SER SER THR GLY ASN SEQRES 28 A 774 LEU VAL GLU TRP PHE LEU LEU ARG LYS ALA TYR GLU ARG SEQRES 29 A 774 ASN GLU LEU ALA PRO ASN LYS PRO ASP GLU ARG GLU TYR SEQRES 30 A 774 GLU ARG ARG LEU ARG GLU SER TYR ALA GLY GLY TYR VAL SEQRES 31 A 774 LYS GLU PRO GLU LYS GLY LEU TRP GLU GLY LEU VAL SER SEQRES 32 A 774 LEU ASP PHE ARG SER LEU GLY PRO SER ILE ILE ILE THR SEQRES 33 A 774 HIS ASN VAL SER PRO ASP THR LEU ASN ARG GLU GLY CYS SEQRES 34 A 774 ARG GLU TYR ASP VAL ALA PRO GLU VAL GLY HIS LYS PHE SEQRES 35 A 774 CYS LYS ASP PHE PRO GLY PHE ILE PRO SER LEU LEU GLY SEQRES 36 A 774 ASP LEU LEU GLU GLU ARG GLN LYS VAL LYS LYS LYS MET SEQRES 37 A 774 LYS ALA THR ILE ASP PRO ILE GLU LYS LYS LEU LEU ASP SEQRES 38 A 774 TYR ARG GLN ARG LEU ILE LYS ILE LEU ALA ASN SER PHE SEQRES 39 A 774 TYR GLY TYR TYR GLY TYR ALA LYS ALA ARG TRP TYR CYS SEQRES 40 A 774 LYS GLU CYS ALA GLU SER VAL THR ALA TRP GLY ARG GLN SEQRES 41 A 774 TYR ILE GLU THR THR ILE ARG GLU ILE GLU GLU LYS PHE SEQRES 42 A 774 GLY PHE LYS VAL LEU TYR ALA ASP THR ASP GLY PHE PHE SEQRES 43 A 774 ALA THR ILE PRO GLY ALA ASP ALA GLU THR VAL LYS LYS SEQRES 44 A 774 LYS ALA LYS GLU PHE LEU ASP TYR ILE ASN ALA LYS LEU SEQRES 45 A 774 PRO GLY LEU LEU GLU LEU GLU TYR GLU GLY PHE TYR LYS SEQRES 46 A 774 ARG GLY PHE PHE VAL THR LYS LYS LYS TYR ALA VAL ILE SEQRES 47 A 774 ASP GLU GLU ASP LYS ILE THR THR ARG GLY LEU GLU ILE SEQRES 48 A 774 VAL ARG ARG ASP TRP SER GLU ILE ALA LYS GLU THR GLN SEQRES 49 A 774 ALA ARG VAL LEU GLU ALA ILE LEU LYS HIS GLY ASP VAL SEQRES 50 A 774 GLU GLU ALA VAL ARG ILE VAL LYS GLU VAL THR GLU LYS SEQRES 51 A 774 LEU SER LYS TYR GLU VAL PRO PRO GLU LYS LEU VAL ILE SEQRES 52 A 774 TYR LYS GLN ILE THR ARG ASP LEU LYS ASP TYR LYS ALA SEQRES 53 A 774 THR GLY PRO HIS VAL ALA VAL ALA LYS ARG LEU ALA ALA SEQRES 54 A 774 ARG GLY VAL LYS ILE ARG PRO GLY THR VAL ILE SER TYR SEQRES 55 A 774 ILE VAL LEU LYS GLY SER GLY ARG ILE GLY ASP ARG ALA SEQRES 56 A 774 ILE PRO PHE ASP GLU PHE ASP PRO THR LYS HIS LYS TYR SEQRES 57 A 774 ASP ALA GLU TYR TYR ILE GLU ASN GLN VAL LEU PRO ALA SEQRES 58 A 774 VAL GLU ARG ILE LEU ARG ALA SER HIS TYR ARG LYS GLU SEQRES 59 A 774 ASP LEU ARG TYR GLN LYS THR ARG GLN VAL GLY LEU SER SEQRES 60 A 774 ALA TRP LEU LYS PRO LYS THR SEQRES 1 T 18 DA DA DA DC DG DT DA DC DG DC DA DG DT SEQRES 2 T 18 DT DC DG DC DG SEQRES 1 P 12 DC DG DC DG DA DA DC DT DG DC DG U FORMUL 4 HOH *105(H2 O) HELIX 1 AA1 ASP A 44 SER A 46 5 3 HELIX 2 AA2 ALA A 47 LYS A 53 1 7 HELIX 3 AA3 HIS A 89 GLN A 91 5 3 HELIX 4 AA4 ASP A 92 HIS A 103 1 12 HELIX 5 AA5 PRO A 115 LYS A 124 1 10 HELIX 6 AA6 THR A 186 ASP A 202 1 17 HELIX 7 AA7 PHE A 214 LEU A 226 1 13 HELIX 8 AA8 LEU A 260 ILE A 268 1 9 HELIX 9 AA9 THR A 274 PHE A 283 1 10 HELIX 10 AB1 TYR A 291 GLY A 302 1 12 HELIX 11 AB2 GLY A 304 GLY A 338 1 35 HELIX 12 AB3 SER A 340 SER A 345 1 6 HELIX 13 AB4 SER A 348 ARG A 364 1 17 HELIX 14 AB5 ASP A 373 GLU A 383 1 11 HELIX 15 AB6 SER A 408 ASN A 418 1 11 HELIX 16 AB7 GLY A 448 ALA A 470 1 23 HELIX 17 AB8 ASP A 473 SER A 493 1 21 HELIX 18 AB9 SER A 493 TYR A 498 1 6 HELIX 19 AC1 CYS A 507 LYS A 532 1 26 HELIX 20 AC2 ASP A 553 LEU A 572 1 20 HELIX 21 AC3 LEU A 609 ARG A 613 5 5 HELIX 22 AC4 SER A 617 LYS A 633 1 17 HELIX 23 AC5 ASP A 636 LYS A 653 1 18 HELIX 24 AC6 PRO A 657 VAL A 662 5 6 HELIX 25 AC7 ASP A 670 TYR A 674 5 5 HELIX 26 AC8 GLY A 678 ARG A 690 1 13 HELIX 27 AC9 ARG A 710 ASP A 713 5 4 HELIX 28 AD1 ASP A 719 PHE A 721 5 3 HELIX 29 AD2 ASP A 729 ASN A 736 1 8 HELIX 30 AD3 GLN A 737 ARG A 747 1 11 SHEET 1 AA1 3 ILE A 2 GLU A 10 0 SHEET 2 AA1 3 LYS A 13 GLU A 22 -1 O ARG A 17 N ASP A 6 SHEET 3 AA1 3 GLU A 25 ASP A 31 -1 O GLU A 29 N ILE A 18 SHEET 1 AA2 5 THR A 55 ARG A 58 0 SHEET 2 AA2 5 THR A 61 PHE A 75 -1 O VAL A 63 N ALA A 56 SHEET 3 AA2 5 ARG A 78 PHE A 87 -1 O ILE A 80 N LYS A 73 SHEET 4 AA2 5 TYR A 37 LEU A 42 -1 N ALA A 40 O TRP A 83 SHEET 5 AA2 5 VAL A 106 TYR A 110 -1 O VAL A 107 N LEU A 41 SHEET 1 AA3 6 VAL A 181 VAL A 183 0 SHEET 2 AA3 6 ALA A 168 THR A 172 1 N VAL A 170 O ASP A 182 SHEET 3 AA3 6 ILE A 157 ALA A 163 -1 N ILE A 160 O ILE A 171 SHEET 4 AA3 6 MET A 137 THR A 144 -1 N ALA A 139 O ALA A 163 SHEET 5 AA3 6 VAL A 205 THR A 208 1 O ILE A 207 N LEU A 138 SHEET 6 AA3 6 ILE A 256 ASP A 259 1 O PHE A 258 N LEU A 206 SHEET 1 AA4 2 LYS A 240 ARG A 243 0 SHEET 2 AA4 2 PHE A 248 GLU A 251 -1 O ALA A 249 N GLN A 242 SHEET 1 AA5 7 VAL A 390 LYS A 391 0 SHEET 2 AA5 7 LYS A 536 ASP A 541 -1 O ALA A 540 N LYS A 391 SHEET 3 AA5 7 GLY A 544 THR A 548 -1 O THR A 548 N LYS A 536 SHEET 4 AA5 7 GLY A 396 PHE A 406 -1 N VAL A 402 O ALA A 547 SHEET 5 AA5 7 LEU A 578 THR A 591 -1 O LYS A 585 N GLY A 400 SHEET 6 AA5 7 LYS A 594 ILE A 598 -1 O LYS A 594 N THR A 591 SHEET 7 AA5 7 ILE A 604 ARG A 607 -1 O THR A 605 N VAL A 597 SHEET 1 AA6 2 TYR A 432 VAL A 434 0 SHEET 2 AA6 2 LYS A 441 CYS A 443 -1 O PHE A 442 N ASP A 433 SHEET 1 AA7 3 ILE A 663 GLN A 666 0 SHEET 2 AA7 3 VAL A 699 VAL A 704 -1 O ILE A 700 N LYS A 665 SHEET 3 AA7 3 ALA A 715 PRO A 717 -1 O ILE A 716 N ILE A 703 SSBOND 1 CYS A 429 CYS A 443 1555 1555 2.03 SSBOND 2 CYS A 507 CYS A 510 1555 1555 2.04 CRYST1 77.970 102.340 112.230 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012825 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008910 0.00000 CONECT 3516 3631 CONECT 3631 3516 CONECT 4170 4194 CONECT 4194 4170 MASTER 408 0 0 30 28 0 0 6 6715 3 4 63 END