HEADER DNA BINDING PROTEIN 22-JAN-25 9MYP TITLE STRUCTURE OF PATIRIA MINIATA HOP1 CHROMATIN BINDING REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HORMA DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, C, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: N-TERMINAL MKSSHHHHHHENLYFQSNA TAG; METHYLATED LYSINE COMPND 6 (MLY) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PATIRIA MINIATA; SOURCE 3 ORGANISM_COMMON: BAT STAR; SOURCE 4 ORGANISM_TAXID: 46514; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEIOSIS, PHD DOMAIN, WINGED-HELIX DOMAIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.R.RODRIGUEZ,Q.YE,J.NGUYEN,K.CHAU,K.D.CORBETT REVDAT 2 15-OCT-25 9MYP 1 JRNL REVDAT 1 13-AUG-25 9MYP 0 JRNL AUTH A.A.RODRIGUEZ,A.E.CIRULLI,K.CHAU,J.NGUYEN,Q.YE,K.D.CORBETT JRNL TITL BIPARTITE CHROMATIN RECOGNITION BY HOP1 FROM TWO DIVERGED JRNL TITL 2 HOLOZOA. JRNL REF LIFE SCI ALLIANCE V. 8 2025 JRNL REFN ESSN 2575-1077 JRNL PMID 40829932 JRNL DOI 10.26508/LSA.202503428 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 47825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 82.9500 - 4.7300 0.98 2868 146 0.1825 0.1989 REMARK 3 2 4.7200 - 3.7500 0.96 2670 151 0.1552 0.1708 REMARK 3 3 3.7500 - 3.2800 0.98 2715 126 0.1825 0.2394 REMARK 3 4 3.2800 - 2.9800 0.99 2667 141 0.1928 0.2618 REMARK 3 5 2.9800 - 2.7600 0.99 2714 138 0.2058 0.2558 REMARK 3 6 2.7600 - 2.6000 1.00 2710 136 0.2096 0.2763 REMARK 3 7 2.6000 - 2.4700 0.98 2657 154 0.2072 0.2456 REMARK 3 8 2.4700 - 2.3600 0.99 2665 154 0.2119 0.2708 REMARK 3 9 2.3600 - 2.2700 0.98 2595 150 0.2190 0.3032 REMARK 3 10 2.2700 - 2.1900 1.00 2696 146 0.2316 0.2540 REMARK 3 11 2.1900 - 2.1200 1.00 2676 138 0.2272 0.2406 REMARK 3 12 2.1200 - 2.0600 1.00 2667 146 0.2277 0.2646 REMARK 3 13 2.0600 - 2.0100 1.00 2665 147 0.2311 0.2955 REMARK 3 14 2.0100 - 1.9600 1.00 2629 150 0.2353 0.2822 REMARK 3 15 1.9600 - 1.9200 0.99 2648 141 0.2670 0.2581 REMARK 3 16 1.9200 - 1.8700 0.99 2659 137 0.3050 0.3249 REMARK 3 17 1.8700 - 1.8400 0.94 2500 123 0.3596 0.3570 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.255 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.819 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3941 REMARK 3 ANGLE : 1.130 5319 REMARK 3 CHIRALITY : 0.060 577 REMARK 3 PLANARITY : 0.013 690 REMARK 3 DIHEDRAL : 15.132 1475 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9MYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1000291891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2827 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47903 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 82.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS TRIS PH 6.5, 0.1 M POTASSIUM REMARK 280 THIOCYANATE, AND 17% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.32700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.70100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.47750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.70100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.32700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.47750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 474 REMARK 465 GLY A 475 REMARK 465 LYS A 476 REMARK 465 ARG A 477 REMARK 465 LEU A 478 REMARK 465 LYS A 499 REMARK 465 ALA C 473 REMARK 465 LYS C 474 REMARK 465 GLY C 475 REMARK 465 LYS C 476 REMARK 465 ARG C 477 REMARK 465 LEU C 478 REMARK 465 LYS C 498 REMARK 465 LYS C 499 REMARK 465 LYS B 474 REMARK 465 GLY B 475 REMARK 465 LYS B 476 REMARK 465 ARG B 477 REMARK 465 LEU B 478 REMARK 465 LYS B 499 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 498 CG CD CE NZ REMARK 470 ASN C 472 CG OD1 ND2 REMARK 470 LYS B 498 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLU C 453 O HOH C 602 1.05 REMARK 500 O HOH C 660 O HOH C 673 1.28 REMARK 500 OE2 GLU A 437 HE ARG A 449 1.45 REMARK 500 HH11 ARG B 463 O HOH B 604 1.53 REMARK 500 HZ1 LYS A 401 O HOH A 603 1.53 REMARK 500 H LYS C 484 O HOH C 604 1.56 REMARK 500 O HOH B 671 O HOH B 688 1.62 REMARK 500 O HOH A 689 O HOH A 743 1.64 REMARK 500 O LEU C 450 O HOH C 601 1.66 REMARK 500 O HOH A 703 O HOH A 730 1.67 REMARK 500 O HOH A 751 O HOH B 695 1.70 REMARK 500 O HOH A 725 O HOH B 686 1.73 REMARK 500 O HOH A 705 O HOH A 719 1.75 REMARK 500 O HOH A 658 O HOH A 732 1.78 REMARK 500 O HOH A 711 O HOH A 744 1.83 REMARK 500 N GLU C 453 O HOH C 602 1.83 REMARK 500 O HOH A 674 O HOH A 724 1.85 REMARK 500 O HOH A 619 O HOH A 714 1.91 REMARK 500 O ASP C 439 O HOH C 603 1.95 REMARK 500 O HOH A 696 O HOH A 751 1.95 REMARK 500 O VAL C 482 O HOH C 604 1.98 REMARK 500 O HOH A 704 O HOH A 713 1.99 REMARK 500 O HOH A 693 O HOH A 709 2.00 REMARK 500 OD2 ASP A 439 O HOH A 601 2.01 REMARK 500 OE2 GLU B 467 O HOH B 601 2.03 REMARK 500 O HOH B 672 O HOH B 687 2.04 REMARK 500 O HOH C 664 O HOH C 668 2.05 REMARK 500 O HOH B 675 O HOH B 676 2.06 REMARK 500 OE1 GLU A 465 O HOH A 602 2.06 REMARK 500 O HOH B 669 O HOH B 691 2.07 REMARK 500 O HOH B 674 O HOH B 679 2.07 REMARK 500 NZ LYS A 401 O HOH A 603 2.09 REMARK 500 O HOH B 660 O HOH B 664 2.10 REMARK 500 SG CYS B 399 O HOH B 665 2.11 REMARK 500 O HOH B 658 O HOH B 685 2.12 REMARK 500 OE1 GLU B 371 O HOH B 602 2.14 REMARK 500 O HOH A 621 O HOH A 690 2.15 REMARK 500 O HOH C 661 O HOH C 665 2.15 REMARK 500 O HOH A 640 O HOH A 735 2.16 REMARK 500 O HOH A 684 O HOH A 686 2.17 REMARK 500 O HOH A 663 O HOH A 728 2.17 REMARK 500 O HOH A 642 O HOH A 720 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 364 114.47 -169.02 REMARK 500 LYS A 374 19.09 59.71 REMARK 500 SER A 489 -71.97 -95.07 REMARK 500 ASP C 364 115.53 -163.63 REMARK 500 ILE C 402 16.43 -143.33 REMARK 500 GLN C 471 -169.95 -105.44 REMARK 500 SER C 489 -63.85 -102.70 REMARK 500 ASP B 364 117.94 -165.43 REMARK 500 SER B 489 -67.92 -99.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 503 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 338 NE2 REMARK 620 2 HIS A 340 NE2 92.0 REMARK 620 3 HIS C 338 NE2 89.1 175.2 REMARK 620 4 HIS C 340 NE2 90.0 90.8 93.9 REMARK 620 5 HIS B 338 NE2 59.0 108.9 75.7 36.4 REMARK 620 6 HIS B 340 NE2 57.0 109.6 74.9 38.7 2.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 356 SG REMARK 620 2 CYS A 358 SG 118.1 REMARK 620 3 HIS A 378 ND1 107.4 95.6 REMARK 620 4 CYS A 381 SG 111.0 110.1 113.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 370 SG REMARK 620 2 CYS A 373 SG 107.6 REMARK 620 3 CYS A 396 SG 111.2 114.0 REMARK 620 4 CYS A 399 SG 113.8 106.3 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 356 SG REMARK 620 2 CYS C 358 SG 118.1 REMARK 620 3 HIS C 378 ND1 106.9 97.1 REMARK 620 4 CYS C 381 SG 105.8 109.5 120.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 370 SG REMARK 620 2 CYS C 373 SG 109.3 REMARK 620 3 CYS C 396 SG 110.9 117.2 REMARK 620 4 CYS C 399 SG 109.9 108.2 100.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 356 SG REMARK 620 2 CYS B 358 SG 117.6 REMARK 620 3 HIS B 378 ND1 103.2 97.2 REMARK 620 4 CYS B 381 SG 110.0 111.5 116.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 370 SG REMARK 620 2 CYS B 373 SG 111.1 REMARK 620 3 CYS B 396 SG 110.2 111.8 REMARK 620 4 CYS B 399 SG 110.8 107.8 105.1 REMARK 620 N 1 2 3 DBREF1 9MYP A 352 499 UNP A0A913ZKG6_PATMI DBREF2 9MYP A A0A913ZKG6 352 499 DBREF1 9MYP C 352 499 UNP A0A913ZKG6_PATMI DBREF2 9MYP C A0A913ZKG6 352 499 DBREF1 9MYP B 352 499 UNP A0A913ZKG6_PATMI DBREF2 9MYP B A0A913ZKG6 352 499 SEQADV 9MYP MET A 333 UNP A0A913ZKG INITIATING METHIONINE SEQADV 9MYP LYS A 334 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP SER A 335 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP SER A 336 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS A 337 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS A 338 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS A 339 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS A 340 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS A 341 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS A 342 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP GLU A 343 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP ASN A 344 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP LEU A 345 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP TYR A 346 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP PHE A 347 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP GLN A 348 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP SER A 349 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP ASN A 350 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP ALA A 351 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP MET C 333 UNP A0A913ZKG INITIATING METHIONINE SEQADV 9MYP LYS C 334 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP SER C 335 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP SER C 336 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS C 337 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS C 338 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS C 339 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS C 340 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS C 341 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS C 342 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP GLU C 343 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP ASN C 344 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP LEU C 345 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP TYR C 346 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP PHE C 347 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP GLN C 348 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP SER C 349 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP ASN C 350 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP ALA C 351 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP MET B 333 UNP A0A913ZKG INITIATING METHIONINE SEQADV 9MYP LYS B 334 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP SER B 335 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP SER B 336 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS B 337 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS B 338 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS B 339 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS B 340 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS B 341 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP HIS B 342 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP GLU B 343 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP ASN B 344 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP LEU B 345 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP TYR B 346 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP PHE B 347 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP GLN B 348 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP SER B 349 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP ASN B 350 UNP A0A913ZKG EXPRESSION TAG SEQADV 9MYP ALA B 351 UNP A0A913ZKG EXPRESSION TAG SEQRES 1 A 167 MET LYS SER SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 A 167 TYR PHE GLN SER ASN ALA ASN ILE VAL ARG CYS PRO CYS SEQRES 3 A 167 GLY CYS ASN GLU ASP ASP GLY LEU MET ILE ARG CYS GLU SEQRES 4 A 167 GLU CYS LYS LEU TRP GLN HIS ALA VAL CYS PHE ALA ILE SEQRES 5 A 167 ILE SER GLU ASP ASP ALA PRO GLU GLN HIS VAL CYS ASN SEQRES 6 A 167 GLN CYS ALA LYS ILE VAL PRO ARG HIS MET LYS PRO THR SEQRES 7 A 167 ASP PRO TYR LEU THR THR LEU ALA PRO VAL VAL LEU GLN SEQRES 8 A 167 ALA THR CYS LEU TRP ARG ARG ALA LEU LEU ALA ALA THR SEQRES 9 A 167 GLU MET ASP ARG ILE LEU VAL PRO ASN PHE SER ARG ARG SEQRES 10 A 167 LEU GLY VAL GLU ILE THR VAL ALA HIS GLY LEU ILE ASN SEQRES 11 A 167 ARG LEU GLU LYS GLU GLY TYR CYS GLN ASN ALA LYS GLY SEQRES 12 A 167 LYS ARG LEU GLY ARG LEU VAL ASN LYS GLU LYS LEU LYS SEQRES 13 A 167 SER GLU GLY PHE LYS MLY TYR PHE GLU LYS LYS SEQRES 1 C 167 MET LYS SER SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 C 167 TYR PHE GLN SER ASN ALA ASN ILE VAL ARG CYS PRO CYS SEQRES 3 C 167 GLY CYS ASN GLU ASP ASP GLY LEU MET ILE ARG CYS GLU SEQRES 4 C 167 GLU CYS LYS LEU TRP GLN HIS ALA VAL CYS PHE ALA ILE SEQRES 5 C 167 ILE SER GLU ASP ASP ALA PRO GLU GLN HIS VAL CYS ASN SEQRES 6 C 167 GLN CYS ALA LYS ILE VAL PRO ARG HIS MET LYS PRO THR SEQRES 7 C 167 ASP PRO TYR LEU THR THR LEU ALA PRO VAL VAL LEU GLN SEQRES 8 C 167 ALA THR CYS LEU TRP ARG ARG ALA LEU LEU ALA ALA THR SEQRES 9 C 167 GLU MET ASP ARG ILE LEU VAL PRO ASN PHE SER ARG ARG SEQRES 10 C 167 LEU GLY VAL GLU ILE THR VAL ALA HIS GLY LEU ILE ASN SEQRES 11 C 167 ARG LEU GLU LYS GLU GLY TYR CYS GLN ASN ALA LYS GLY SEQRES 12 C 167 LYS ARG LEU GLY ARG LEU VAL ASN LYS GLU LYS LEU LYS SEQRES 13 C 167 SER GLU GLY PHE LYS MLY TYR PHE GLU LYS LYS SEQRES 1 B 167 MET LYS SER SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 B 167 TYR PHE GLN SER ASN ALA ASN ILE VAL ARG CYS PRO CYS SEQRES 3 B 167 GLY CYS ASN GLU ASP ASP GLY LEU MET ILE ARG CYS GLU SEQRES 4 B 167 GLU CYS LYS LEU TRP GLN HIS ALA VAL CYS PHE ALA ILE SEQRES 5 B 167 ILE SER GLU ASP ASP ALA PRO GLU GLN HIS VAL CYS ASN SEQRES 6 B 167 GLN CYS ALA LYS ILE VAL PRO ARG HIS MET LYS PRO THR SEQRES 7 B 167 ASP PRO TYR LEU THR THR LEU ALA PRO VAL VAL LEU GLN SEQRES 8 B 167 ALA THR CYS LEU TRP ARG ARG ALA LEU LEU ALA ALA THR SEQRES 9 B 167 GLU MET ASP ARG ILE LEU VAL PRO ASN PHE SER ARG ARG SEQRES 10 B 167 LEU GLY VAL GLU ILE THR VAL ALA HIS GLY LEU ILE ASN SEQRES 11 B 167 ARG LEU GLU LYS GLU GLY TYR CYS GLN ASN ALA LYS GLY SEQRES 12 B 167 LYS ARG LEU GLY ARG LEU VAL ASN LYS GLU LYS LEU LYS SEQRES 13 B 167 SER GLU GLY PHE LYS MLY TYR PHE GLU LYS LYS MODRES 9MYP MLY A 494 LYS MODIFIED RESIDUE MODRES 9MYP MLY C 494 LYS MODIFIED RESIDUE MODRES 9MYP MLY B 494 LYS MODIFIED RESIDUE HET MLY A 494 27 HET MLY C 494 27 HET MLY B 494 27 HET ZN A 501 1 HET ZN A 502 1 HET NI A 503 1 HET ZN C 501 1 HET ZN C 502 1 HET ZN B 501 1 HET ZN B 502 1 HETNAM MLY N-DIMETHYL-LYSINE HETNAM ZN ZINC ION HETNAM NI NICKEL (II) ION FORMUL 1 MLY 3(C8 H18 N2 O2) FORMUL 4 ZN 6(ZN 2+) FORMUL 6 NI NI 2+ FORMUL 11 HOH *326(H2 O) HELIX 1 AA1 VAL A 380 ALA A 383 5 4 HELIX 2 AA2 SER A 386 ALA A 390 5 5 HELIX 3 AA3 CYS A 396 LYS A 401 1 6 HELIX 4 AA4 ASP A 411 THR A 416 1 6 HELIX 5 AA5 ALA A 418 THR A 436 1 19 HELIX 6 AA6 LEU A 442 GLY A 451 1 10 HELIX 7 AA7 GLU A 453 GLU A 467 1 15 HELIX 8 AA8 ASN A 483 PHE A 496 1 14 HELIX 9 AA9 VAL C 380 ALA C 383 5 4 HELIX 10 AB1 SER C 386 ALA C 390 5 5 HELIX 11 AB2 ASN C 397 VAL C 403 5 7 HELIX 12 AB3 ASP C 411 THR C 416 1 6 HELIX 13 AB4 ALA C 418 THR C 436 1 19 HELIX 14 AB5 LEU C 442 GLY C 451 1 10 HELIX 15 AB6 GLU C 453 GLU C 467 1 15 HELIX 16 AB7 ASN C 483 PHE C 496 1 14 HELIX 17 AB8 VAL B 380 ALA B 383 5 4 HELIX 18 AB9 GLN B 398 ILE B 402 5 5 HELIX 19 AC1 ASP B 411 THR B 415 5 5 HELIX 20 AC2 ALA B 418 THR B 436 1 19 HELIX 21 AC3 LEU B 442 GLY B 451 1 10 HELIX 22 AC4 GLU B 453 GLU B 467 1 15 HELIX 23 AC5 ASN B 483 PHE B 496 1 14 SHEET 1 AA1 3 TRP A 376 HIS A 378 0 SHEET 2 AA1 3 LEU A 366 ARG A 369 -1 N ILE A 368 O GLN A 377 SHEET 3 AA1 3 LEU C 345 PHE C 347 -1 O TYR C 346 N MET A 367 SHEET 1 AA2 2 ARG A 440 ILE A 441 0 SHEET 2 AA2 2 ARG A 480 LEU A 481 -1 O ARG A 480 N ILE A 441 SHEET 1 AA3 2 MET C 367 ARG C 369 0 SHEET 2 AA3 2 TRP C 376 HIS C 378 -1 O GLN C 377 N ILE C 368 SHEET 1 AA4 2 ARG C 440 ILE C 441 0 SHEET 2 AA4 2 ARG C 480 LEU C 481 -1 O ARG C 480 N ILE C 441 SHEET 1 AA5 2 MET B 367 ARG B 369 0 SHEET 2 AA5 2 TRP B 376 HIS B 378 -1 O GLN B 377 N ILE B 368 SHEET 1 AA6 2 ARG B 440 ILE B 441 0 SHEET 2 AA6 2 ARG B 480 LEU B 481 -1 O ARG B 480 N ILE B 441 LINK C LYS A 493 N MLY A 494 1555 1555 1.33 LINK C MLY A 494 N TYR A 495 1555 1555 1.31 LINK C LYS C 493 N MLY C 494 1555 1555 1.32 LINK C MLY C 494 N TYR C 495 1555 1555 1.32 LINK C LYS B 493 N MLY B 494 1555 1555 1.32 LINK C MLY B 494 N TYR B 495 1555 1555 1.34 LINK NE2 HIS A 338 NI NI A 503 1555 1555 2.08 LINK NE2 HIS A 340 NI NI A 503 1555 1555 2.14 LINK SG CYS A 356 ZN ZN A 502 1555 1555 2.32 LINK SG CYS A 358 ZN ZN A 502 1555 1555 2.35 LINK SG CYS A 370 ZN ZN A 501 1555 1555 2.32 LINK SG CYS A 373 ZN ZN A 501 1555 1555 2.37 LINK ND1 HIS A 378 ZN ZN A 502 1555 1555 2.17 LINK SG CYS A 381 ZN ZN A 502 1555 1555 2.26 LINK SG CYS A 396 ZN ZN A 501 1555 1555 2.38 LINK SG CYS A 399 ZN ZN A 501 1555 1555 2.35 LINK NI NI A 503 NE2 HIS C 338 1555 1555 2.23 LINK NI NI A 503 NE2 HIS C 340 1555 1555 2.23 LINK NI NI A 503 NE2 HIS B 338 2565 1555 2.13 LINK NI NI A 503 NE2 HIS B 340 2565 1555 2.15 LINK SG CYS C 356 ZN ZN C 502 1555 1555 2.20 LINK SG CYS C 358 ZN ZN C 502 1555 1555 2.40 LINK SG CYS C 370 ZN ZN C 501 1555 1555 2.39 LINK SG CYS C 373 ZN ZN C 501 1555 1555 2.29 LINK ND1 HIS C 378 ZN ZN C 502 1555 1555 2.12 LINK SG CYS C 381 ZN ZN C 502 1555 1555 2.34 LINK SG CYS C 396 ZN ZN C 501 1555 1555 2.31 LINK SG CYS C 399 ZN ZN C 501 1555 1555 2.40 LINK SG CYS B 356 ZN ZN B 502 1555 1555 2.30 LINK SG CYS B 358 ZN ZN B 502 1555 1555 2.33 LINK SG CYS B 370 ZN ZN B 501 1555 1555 2.35 LINK SG CYS B 373 ZN ZN B 501 1555 1555 2.36 LINK ND1 HIS B 378 ZN ZN B 502 1555 1555 2.12 LINK SG CYS B 381 ZN ZN B 502 1555 1555 2.29 LINK SG CYS B 396 ZN ZN B 501 1555 1555 2.37 LINK SG CYS B 399 ZN ZN B 501 1555 1555 2.38 CRYST1 38.654 106.955 131.402 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025871 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009350 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007610 0.00000 CONECT 87 7643 CONECT 121 7643 CONECT 382 7642 CONECT 406 7642 CONECT 573 7641 CONECT 613 7641 CONECT 706 7642 CONECT 748 7642 CONECT 965 7641 CONECT 1006 7641 CONECT 2444 2464 CONECT 2464 2444 2465 2475 CONECT 2465 2464 2466 2473 2476 CONECT 2466 2465 2467 2477 2478 CONECT 2467 2466 2468 2479 2480 CONECT 2468 2467 2469 2481 2482 CONECT 2469 2468 2470 2483 2484 CONECT 2470 2469 2471 2472 CONECT 2471 2470 2485 2486 2487 CONECT 2472 2470 2488 2489 2490 CONECT 2473 2465 2474 2491 CONECT 2474 2473 CONECT 2475 2464 CONECT 2476 2465 CONECT 2477 2466 CONECT 2478 2466 CONECT 2479 2467 CONECT 2480 2467 CONECT 2481 2468 CONECT 2482 2468 CONECT 2483 2469 CONECT 2484 2469 CONECT 2485 2471 CONECT 2486 2471 CONECT 2487 2471 CONECT 2488 2472 CONECT 2489 2472 CONECT 2490 2472 CONECT 2491 2473 CONECT 2642 7643 CONECT 2676 7643 CONECT 2937 7645 CONECT 2961 7645 CONECT 3128 7644 CONECT 3168 7644 CONECT 3261 7645 CONECT 3303 7645 CONECT 3520 7644 CONECT 3561 7644 CONECT 4982 5002 CONECT 5002 4982 5003 5013 CONECT 5003 5002 5004 5011 5014 CONECT 5004 5003 5005 5015 5016 CONECT 5005 5004 5006 5017 5018 CONECT 5006 5005 5007 5019 5020 CONECT 5007 5006 5008 5021 5022 CONECT 5008 5007 5009 5010 CONECT 5009 5008 5023 5024 5025 CONECT 5010 5008 5026 5027 5028 CONECT 5011 5003 5012 5029 CONECT 5012 5011 CONECT 5013 5002 CONECT 5014 5003 CONECT 5015 5004 CONECT 5016 5004 CONECT 5017 5005 CONECT 5018 5005 CONECT 5019 5006 CONECT 5020 5006 CONECT 5021 5007 CONECT 5022 5007 CONECT 5023 5009 CONECT 5024 5009 CONECT 5025 5009 CONECT 5026 5010 CONECT 5027 5010 CONECT 5028 5010 CONECT 5029 5011 CONECT 5468 7647 CONECT 5492 7647 CONECT 5659 7646 CONECT 5699 7646 CONECT 5792 7647 CONECT 5834 7647 CONECT 6051 7646 CONECT 6092 7646 CONECT 7530 7550 CONECT 7550 7530 7551 7561 CONECT 7551 7550 7552 7559 7562 CONECT 7552 7551 7553 7563 7564 CONECT 7553 7552 7554 7565 7566 CONECT 7554 7553 7555 7567 7568 CONECT 7555 7554 7556 7569 7570 CONECT 7556 7555 7557 7558 CONECT 7557 7556 7571 7572 7573 CONECT 7558 7556 7574 7575 7576 CONECT 7559 7551 7560 7577 CONECT 7560 7559 CONECT 7561 7550 CONECT 7562 7551 CONECT 7563 7552 CONECT 7564 7552 CONECT 7565 7553 CONECT 7566 7553 CONECT 7567 7554 CONECT 7568 7554 CONECT 7569 7555 CONECT 7570 7555 CONECT 7571 7557 CONECT 7572 7557 CONECT 7573 7557 CONECT 7574 7558 CONECT 7575 7558 CONECT 7576 7558 CONECT 7577 7559 CONECT 7641 573 613 965 1006 CONECT 7642 382 406 706 748 CONECT 7643 87 121 2642 2676 CONECT 7644 3128 3168 3520 3561 CONECT 7645 2937 2961 3261 3303 CONECT 7646 5659 5699 6051 6092 CONECT 7647 5468 5492 5792 5834 MASTER 400 0 10 23 13 0 0 6 4190 3 122 39 END