HEADER OXIDOREDUCTASE 25-JAN-25 9N1D TITLE CRYSTAL STRUCTURE OF CYSS FROM CORALLOCOCCUS SP. CA054B WITH 5'- TITLE 2 DEOXYADENOSINE AND METHIONINE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: RADICAL SAM ENZYME CYSS; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORALLOCOCCUS SP. CA054B; SOURCE 3 ORGANISM_TAXID: 2316734; SOURCE 4 GENE: D7V80_23740; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CYSTOBACTAMIDS, RADICAL S-ADENOSYLMETHIONINE METHYLASE, COBALAMIN, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.WANG,J.CUI,S.J.BOOKER REVDAT 1 28-JAN-26 9N1D 0 JRNL AUTH J.CUI,B.WANG,R.K.MAURYA,S.J.BOOKER JRNL TITL STRUCTURAL BASIS FOR ITERATIVE METHYLATION BY A JRNL TITL 2 COBALAMIN-DEPENDENT RADICAL S -ADENOSYLMETHIONINE ENZYME IN JRNL TITL 3 CYSTOBACTAMIDS BIOSYNTHESIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 123 19123 2026 JRNL REFN ESSN 1091-6490 JRNL PMID 41564129 JRNL DOI 10.1073/PNAS.2527019123 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.3 REMARK 3 NUMBER OF REFLECTIONS : 68013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.240 REMARK 3 FREE R VALUE TEST SET COUNT : 2885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8500 - 5.3500 0.96 4184 186 0.1447 0.1710 REMARK 3 2 5.3400 - 4.2400 0.96 4138 182 0.1308 0.1564 REMARK 3 3 4.2400 - 3.7100 0.94 4070 185 0.1378 0.1700 REMARK 3 4 3.7100 - 3.3700 0.87 3804 178 0.1539 0.1813 REMARK 3 5 3.3700 - 3.1300 0.92 3961 174 0.1576 0.2186 REMARK 3 6 3.1300 - 2.9400 0.93 4071 184 0.1643 0.2090 REMARK 3 7 2.9400 - 2.8000 0.91 3959 182 0.1621 0.2536 REMARK 3 8 2.8000 - 2.6700 0.88 3796 164 0.1634 0.2201 REMARK 3 9 2.6700 - 2.5700 0.83 3611 170 0.1602 0.2128 REMARK 3 10 2.5700 - 2.4800 0.75 3283 137 0.1622 0.2189 REMARK 3 11 2.4800 - 2.4100 0.70 3034 133 0.1649 0.2344 REMARK 3 12 2.4000 - 2.3400 0.68 2974 128 0.1693 0.2674 REMARK 3 13 2.3400 - 2.2700 0.62 2672 114 0.1796 0.2309 REMARK 3 14 2.2700 - 2.2200 0.56 2433 109 0.2266 0.2593 REMARK 3 15 2.2200 - 2.1700 0.54 2381 103 0.2030 0.2330 REMARK 3 16 2.1700 - 2.1200 0.53 2319 92 0.1763 0.2401 REMARK 3 17 2.1200 - 2.0800 0.52 2240 102 0.1891 0.2495 REMARK 3 18 2.0800 - 2.0400 0.50 2200 94 0.1850 0.2309 REMARK 3 19 2.0400 - 2.0000 0.50 2153 105 0.1895 0.2324 REMARK 3 20 2.0000 - 1.9700 0.49 2114 85 0.2048 0.2509 REMARK 3 21 1.9700 - 1.9400 0.40 1731 78 0.2319 0.2763 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5387 REMARK 3 ANGLE : 0.799 7358 REMARK 3 CHIRALITY : 0.050 799 REMARK 3 PLANARITY : 0.006 982 REMARK 3 DIHEDRAL : 14.675 2063 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 5:163) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9152 5.4283 -19.4779 REMARK 3 T TENSOR REMARK 3 T11: 0.1984 T22: 0.1343 REMARK 3 T33: 0.1107 T12: 0.0406 REMARK 3 T13: -0.0016 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 2.4290 L22: 1.7287 REMARK 3 L33: 2.1614 L12: -0.1517 REMARK 3 L13: 0.0813 L23: -0.1927 REMARK 3 S TENSOR REMARK 3 S11: 0.0466 S12: 0.3326 S13: -0.1291 REMARK 3 S21: -0.3297 S22: -0.0514 S23: 0.1258 REMARK 3 S31: 0.3578 S32: 0.0762 S33: 0.0102 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 164:396) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4577 10.9910 7.8462 REMARK 3 T TENSOR REMARK 3 T11: 0.0915 T22: 0.0940 REMARK 3 T33: 0.1180 T12: 0.0397 REMARK 3 T13: 0.0530 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.5801 L22: 0.9218 REMARK 3 L33: 1.9694 L12: -0.1964 REMARK 3 L13: 1.1464 L23: -0.3852 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: -0.1456 S13: 0.0463 REMARK 3 S21: 0.0572 S22: 0.0581 S23: 0.0911 REMARK 3 S31: -0.1016 S32: -0.2816 S33: -0.0280 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 397:446) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4037 1.5157 12.7980 REMARK 3 T TENSOR REMARK 3 T11: 0.1076 T22: 0.0730 REMARK 3 T33: 0.1317 T12: 0.0551 REMARK 3 T13: 0.0355 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.2050 L22: 1.5540 REMARK 3 L33: 0.7207 L12: -0.0664 REMARK 3 L13: 0.5952 L23: -0.9019 REMARK 3 S TENSOR REMARK 3 S11: 0.2814 S12: 0.1353 S13: 0.0836 REMARK 3 S21: 0.1094 S22: -0.1844 S23: -0.0221 REMARK 3 S31: -0.0070 S32: 0.1205 S33: -0.0309 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 447:515) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3681 -9.2000 15.1553 REMARK 3 T TENSOR REMARK 3 T11: 0.0833 T22: 0.0641 REMARK 3 T33: 0.1041 T12: 0.0042 REMARK 3 T13: 0.0185 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.9384 L22: 2.5756 REMARK 3 L33: 2.7453 L12: 0.2688 REMARK 3 L13: 0.4936 L23: 0.3348 REMARK 3 S TENSOR REMARK 3 S11: -0.0581 S12: 0.1772 S13: -0.0435 REMARK 3 S21: -0.0414 S22: 0.0475 S23: -0.1880 REMARK 3 S31: -0.1254 S32: 0.1541 S33: 0.0121 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 516:704) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2546 -8.9555 23.1604 REMARK 3 T TENSOR REMARK 3 T11: 0.0926 T22: 0.1103 REMARK 3 T33: 0.1305 T12: -0.0103 REMARK 3 T13: 0.0049 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.3090 L22: 1.4320 REMARK 3 L33: 1.8891 L12: -0.0933 REMARK 3 L13: 0.0140 L23: -1.1591 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: -0.0645 S13: -0.0451 REMARK 3 S21: 0.2003 S22: -0.0054 S23: 0.0029 REMARK 3 S31: 0.0650 S32: -0.0684 S33: -0.0481 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9N1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1000286394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03580 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68013 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.52200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH6.0, 15% W/V PEG6000, 200 REMARK 280 MM SODIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.90800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 SER A 632 REMARK 465 ILE A 633 REMARK 465 ALA A 634 REMARK 465 PRO A 635 REMARK 465 VAL A 636 REMARK 465 ARG A 637 REMARK 465 ARG A 638 REMARK 465 PRO A 639 REMARK 465 GLN A 640 REMARK 465 VAL A 641 REMARK 465 ALA A 642 REMARK 465 VAL A 643 REMARK 465 ALA A 644 REMARK 465 SER A 645 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 200 56.28 -152.52 REMARK 500 ALA A 209 36.61 -150.80 REMARK 500 GLN A 303 -47.97 69.31 REMARK 500 ASN A 378 -7.67 84.29 REMARK 500 TYR A 430 -63.36 -104.89 REMARK 500 SER A 486 -10.38 -155.90 REMARK 500 HIS A 497 -70.83 -133.41 REMARK 500 LYS A 618 48.84 -149.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1343 DISTANCE = 7.55 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 702 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 197 SG REMARK 620 2 SF4 A 702 S2 109.3 REMARK 620 3 SF4 A 702 S3 119.8 104.1 REMARK 620 4 SF4 A 702 S4 114.4 103.8 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 702 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 201 SG REMARK 620 2 SF4 A 702 S1 108.9 REMARK 620 3 SF4 A 702 S2 120.2 104.1 REMARK 620 4 SF4 A 702 S3 113.3 105.1 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 702 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 204 SG REMARK 620 2 SF4 A 702 S1 112.1 REMARK 620 3 SF4 A 702 S3 110.7 105.0 REMARK 620 4 SF4 A 702 S4 119.2 104.0 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 B12 A 701 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1125 O REMARK 620 2 B12 A 701 N21 96.9 REMARK 620 3 B12 A 701 N22 89.0 90.2 REMARK 620 4 B12 A 701 N23 98.5 163.2 96.8 REMARK 620 5 B12 A 701 N24 86.7 83.8 172.1 90.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 702 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 704 N REMARK 620 2 SF4 A 702 S1 157.8 REMARK 620 3 SF4 A 702 S2 87.1 101.9 REMARK 620 4 SF4 A 702 S4 96.1 101.7 102.1 REMARK 620 5 MET A 704 OXT 70.6 89.7 85.5 164.5 REMARK 620 N 1 2 3 4 DBREF1 9N1D A 1 645 UNP A0A3A8HCN5_9BACT DBREF2 9N1D A A0A3A8HCN5 1 645 SEQRES 1 A 645 MET GLY ALA MET VAL ASN GLN ARG VAL ALA PHE ILE GLU SEQRES 2 A 645 LEU THR VAL PHE ALA GLY VAL TYR PRO LEU ALA SER GLY SEQRES 3 A 645 TYR MET ARG GLY VAL ALA GLU GLN ASN ALA ALA ILE LYS SEQRES 4 A 645 ASP ALA CYS SER PHE GLU ILE HIS SER ILE CYS ILE ASN SEQRES 5 A 645 ASP ASN ARG PHE GLU ASP ARG LEU ASN ALA ILE ASP ALA SEQRES 6 A 645 ASP VAL TYR ALA ILE SER CYS TYR VAL TRP ASN MET GLY SEQRES 7 A 645 PHE VAL LYS ARG TRP LEU PRO THR LEU THR ALA ARG LYS SEQRES 8 A 645 PRO HIS ALA HIS VAL ILE LEU GLY GLY PRO GLN VAL MET SEQRES 9 A 645 ASN HIS GLY ALA ARG TYR LEU ASP PRO GLY ASN GLU ARG SEQRES 10 A 645 VAL VAL LEU CYS ASN GLY GLU GLY GLU TYR THR PHE ALA SEQRES 11 A 645 ASN TYR LEU ALA GLU ILE CYS SER PRO GLU PRO ASP LEU SEQRES 12 A 645 GLY LYS VAL LYS GLY LEU THR PHE TYR ARG ASN GLY GLU SEQRES 13 A 645 LEU ILE THR SER ALA PRO GLN GLU ARG ILE GLN ASP LEU SEQRES 14 A 645 ASN ALA ILE PRO SER PRO TYR LEU GLU GLY TYR PHE ASP SEQRES 15 A 645 SER GLU LYS TYR VAL TRP ALA PRO ILE GLU THR ASN ARG SEQRES 16 A 645 GLY CYS PRO TYR GLN CYS THR TYR CYS PHE TRP GLY ALA SEQRES 17 A 645 ALA THR ASN SER ARG VAL PHE LYS THR ASP MET ASP ARG SEQRES 18 A 645 VAL LYS ALA GLU ILE THR TRP LEU SER GLN ARG ARG ALA SEQRES 19 A 645 PHE TYR ILE PHE ILE THR ASP ALA ASN PHE GLY MET LEU SEQRES 20 A 645 THR ARG ASP ILE GLU ILE ALA GLN HIS ILE ALA GLU CYS SEQRES 21 A 645 LYS ARG LYS TYR GLY TYR PRO LEU THR VAL TRP LEU SER SEQRES 22 A 645 ALA ALA LYS ASN SER PRO ASP ARG VAL THR GLN ILE THR SEQRES 23 A 645 ARG ILE LEU SER GLN GLU GLY LEU ILE SER THR GLN PRO SEQRES 24 A 645 VAL SER LEU GLN THR MET ASP ALA ASN THR LEU LYS SER SEQRES 25 A 645 VAL LYS ARG GLY ASN ILE LYS GLU SER ALA TYR LEU ASN SEQRES 26 A 645 LEU GLN GLU GLU LEU ARG ARG SER LYS LEU SER SER PHE SEQRES 27 A 645 VAL GLU MET ILE TRP PRO LEU PRO GLY GLU THR LEU GLU SEQRES 28 A 645 THR PHE LYS GLU GLY ILE GLY LYS LEU CYS SER TYR GLU SEQRES 29 A 645 ALA ASP ALA ILE LEU ILE HIS HIS LEU LEU LEU ILE ASN SEQRES 30 A 645 ASN VAL PRO MET ASN ALA GLN ARG GLU GLU PHE ASN LEU SEQRES 31 A 645 GLU VAL SER ASN ASP GLU ASP PRO ASN SER GLU ALA GLN SEQRES 32 A 645 VAL VAL VAL ALA THR ARG ASP VAL THR ARG GLU GLU TYR SEQRES 33 A 645 LYS GLU GLY VAL ARG PHE GLY TYR HIS LEU THR SER LEU SEQRES 34 A 645 TYR SER LEU ARG ALA LEU GLN PHE VAL GLY LYS TYR LEU SEQRES 35 A 645 ASP LYS GLN GLY LEU LEU ALA PHE LYS ASP LEU ILE SER SEQRES 36 A 645 SER PHE SER ASP TYR CYS LYS ARG PHE PRO ASP HIS PRO SEQRES 37 A 645 TYR THR GLN TYR ILE SER SER ILE ILE ASP GLY SER SER SEQRES 38 A 645 GLN SER LYS PHE SER ALA ASN GLY GLY ILE PHE HIS VAL SEQRES 39 A 645 THR LEU HIS GLU PHE ARG ARG GLU PHE ASP GLN LEU LEU SEQRES 40 A 645 ALA GLY PHE LEU GLN SER LEU GLY MET MET HIS THR GLU SEQRES 41 A 645 PRO LEU GLU PHE LEU PHE ASP LEU ASP LEU LEU ASN ARG SEQRES 42 A 645 PRO HIS VAL TYR SER ASN THR PRO VAL THR ASN GLY ASP SEQRES 43 A 645 GLY LEU LEU LYS HIS VAL THR VAL VAL ALA LYS GLU LYS SEQRES 44 A 645 ASP ALA LEU VAL VAL HIS ILE PRO GLU LYS TYR VAL GLN SEQRES 45 A 645 LEU ALA TRP GLU MET LEU ARG LEU ASP GLY ALA PRO SER SEQRES 46 A 645 THR ARG MET ARG VAL LYS TYR ARG GLY ALA GLN MET PRO SEQRES 47 A 645 PHE MET ALA ASN LYS PRO TYR GLU ASP ASN LEU SER TYR SEQRES 48 A 645 CYS GLU ALA LYS LEU HIS LYS MET GLY SER ILE LEU PRO SEQRES 49 A 645 VAL TRP GLU PRO ALA VAL PRO SER ILE ALA PRO VAL ARG SEQRES 50 A 645 ARG PRO GLN VAL ALA VAL ALA SER HET B12 A 701 91 HET SF4 A 702 8 HET 5AD A 703 18 HET MET A 704 9 HET NA A 705 1 HETNAM B12 COBALAMIN HETNAM SF4 IRON/SULFUR CLUSTER HETNAM 5AD 5'-DEOXYADENOSINE HETNAM MET METHIONINE HETNAM NA SODIUM ION FORMUL 2 B12 C62 H89 CO N13 O14 P 2+ FORMUL 3 SF4 FE4 S4 FORMUL 4 5AD C10 H13 N5 O3 FORMUL 5 MET C5 H11 N O2 S FORMUL 6 NA NA 1+ FORMUL 7 HOH *543(H2 O) HELIX 1 AA1 PRO A 22 ASN A 35 1 14 HELIX 2 AA2 ASN A 35 ALA A 41 1 7 HELIX 3 AA3 ARG A 55 ALA A 62 1 8 HELIX 4 AA4 ASN A 76 LYS A 91 1 16 HELIX 5 AA5 HIS A 106 LEU A 111 1 6 HELIX 6 AA6 GLU A 124 CYS A 137 1 14 HELIX 7 AA7 ASP A 142 VAL A 146 5 5 HELIX 8 AA8 ASP A 168 ILE A 172 5 5 HELIX 9 AA9 ASP A 182 TYR A 186 5 5 HELIX 10 AB1 PHE A 205 ALA A 209 5 5 HELIX 11 AB2 ASP A 218 ARG A 232 1 15 HELIX 12 AB3 THR A 248 GLY A 265 1 18 HELIX 13 AB4 SER A 278 GLN A 291 1 14 HELIX 14 AB5 ASP A 306 VAL A 313 1 8 HELIX 15 AB6 LYS A 319 ARG A 332 1 14 HELIX 16 AB7 THR A 349 TYR A 363 1 15 HELIX 17 AB8 VAL A 379 ARG A 385 5 7 HELIX 18 AB9 THR A 412 TYR A 430 1 19 HELIX 19 AC1 LEU A 435 GLN A 445 1 11 HELIX 20 AC2 ALA A 449 LYS A 462 1 14 HELIX 21 AC3 HIS A 467 SER A 480 1 14 HELIX 22 AC4 SER A 486 HIS A 497 1 12 HELIX 23 AC5 PHE A 499 GLY A 515 1 17 HELIX 24 AC6 PRO A 521 ARG A 533 1 13 HELIX 25 AC7 PRO A 567 ARG A 579 1 13 HELIX 26 AC8 PRO A 604 HIS A 617 1 14 HELIX 27 AC9 LYS A 618 ILE A 622 5 5 SHEET 1 AA1 7 CYS A 42 CYS A 50 0 SHEET 2 AA1 7 GLN A 7 THR A 15 1 N VAL A 9 O SER A 43 SHEET 3 AA1 7 VAL A 67 SER A 71 1 O VAL A 67 N ALA A 10 SHEET 4 AA1 7 HIS A 95 GLY A 99 1 O HIS A 95 N TYR A 68 SHEET 5 AA1 7 VAL A 118 CYS A 121 1 O VAL A 119 N VAL A 96 SHEET 6 AA1 7 LEU A 149 ARG A 153 -1 O THR A 150 N LEU A 120 SHEET 7 AA1 7 GLU A 156 THR A 159 -1 O ILE A 158 N PHE A 151 SHEET 1 AA2 3 TRP A 188 ILE A 191 0 SHEET 2 AA2 3 TYR A 236 ILE A 239 1 O PHE A 238 N ILE A 191 SHEET 3 AA2 3 THR A 269 TRP A 271 1 O TRP A 271 N ILE A 239 SHEET 1 AA3 2 ASN A 194 ARG A 195 0 SHEET 2 AA3 2 PHE A 215 LYS A 216 -1 O PHE A 215 N ARG A 195 SHEET 1 AA4 3 GLN A 298 GLN A 303 0 SHEET 2 AA4 3 SER A 337 TRP A 343 1 O PHE A 338 N VAL A 300 SHEET 3 AA4 3 ALA A 367 HIS A 372 1 O HIS A 371 N MET A 341 SHEET 1 AA5 2 GLU A 391 ASN A 394 0 SHEET 2 AA5 2 GLN A 403 ALA A 407 -1 O VAL A 406 N GLU A 391 SHEET 1 AA6 4 THR A 553 LYS A 557 0 SHEET 2 AA6 4 ALA A 561 HIS A 565 -1 O HIS A 565 N THR A 553 SHEET 3 AA6 4 ARG A 587 LYS A 591 -1 O MET A 588 N VAL A 564 SHEET 4 AA6 4 VAL A 625 PRO A 628 -1 O GLU A 627 N ARG A 589 LINK SG CYS A 197 FE1 SF4 A 702 1555 1555 2.28 LINK SG CYS A 201 FE4 SF4 A 702 1555 1555 2.30 LINK SG CYS A 204 FE2 SF4 A 702 1555 1555 2.28 LINK CO B12 A 701 O HOH A1125 1555 1555 2.33 LINK FE3 SF4 A 702 N MET A 704 1555 1555 2.46 LINK FE3 SF4 A 702 OXT MET A 704 1555 1555 2.47 LINK NA NA A 705 O HOH A1211 1555 1555 2.79 CISPEP 1 TYR A 266 PRO A 267 0 3.22 CISPEP 2 TRP A 343 PRO A 344 0 -5.53 CISPEP 3 GLU A 520 PRO A 521 0 3.48 CRYST1 59.283 77.816 77.039 90.00 110.89 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016868 0.000000 0.006438 0.00000 SCALE2 0.000000 0.012851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013894 0.00000 CONECT 1539 5201 CONECT 1573 5204 CONECT 1598 5202 CONECT 5110 5111 5112 5113 5114 CONECT 5110 5561 CONECT 5111 5110 5115 5129 CONECT 5112 5110 5132 5145 CONECT 5113 5110 5147 5157 CONECT 5114 5110 5160 5173 CONECT 5115 5111 5116 5117 5173 CONECT 5116 5115 CONECT 5117 5115 5118 5119 5123 CONECT 5118 5117 CONECT 5119 5117 5120 CONECT 5120 5119 5121 5122 CONECT 5121 5120 CONECT 5122 5120 CONECT 5123 5117 5124 5129 CONECT 5124 5123 5125 CONECT 5125 5124 5126 CONECT 5126 5125 5127 5128 CONECT 5127 5126 CONECT 5128 5126 CONECT 5129 5111 5123 5130 CONECT 5130 5129 5131 5132 CONECT 5131 5130 CONECT 5132 5112 5130 5133 CONECT 5133 5132 5134 5135 5139 CONECT 5134 5133 CONECT 5135 5133 5136 CONECT 5136 5135 5137 5138 CONECT 5137 5136 CONECT 5138 5136 CONECT 5139 5133 5140 5145 CONECT 5140 5139 5141 CONECT 5141 5140 5142 CONECT 5142 5141 5143 5144 CONECT 5143 5142 CONECT 5144 5142 CONECT 5145 5112 5139 5146 CONECT 5146 5145 5147 CONECT 5147 5113 5146 5148 CONECT 5148 5147 5149 5150 5151 CONECT 5149 5148 CONECT 5150 5148 CONECT 5151 5148 5152 5157 CONECT 5152 5151 5153 CONECT 5153 5152 5154 CONECT 5154 5153 5155 5156 CONECT 5155 5154 CONECT 5156 5154 CONECT 5157 5113 5151 5158 CONECT 5158 5157 5159 5160 CONECT 5159 5158 CONECT 5160 5114 5158 5161 CONECT 5161 5160 5162 5163 5168 CONECT 5162 5161 CONECT 5163 5161 5164 CONECT 5164 5163 5165 CONECT 5165 5164 5166 5167 CONECT 5166 5165 CONECT 5167 5165 5174 CONECT 5168 5161 5169 5173 CONECT 5169 5168 5170 CONECT 5170 5169 5171 5172 CONECT 5171 5170 CONECT 5172 5170 CONECT 5173 5114 5115 5168 CONECT 5174 5167 5175 CONECT 5175 5174 5176 5177 CONECT 5176 5175 CONECT 5177 5175 5180 CONECT 5178 5180 CONECT 5179 5180 CONECT 5180 5177 5178 5179 5181 CONECT 5181 5180 5182 CONECT 5182 5181 5183 5187 CONECT 5183 5182 5184 5185 CONECT 5184 5183 CONECT 5185 5183 5186 5190 CONECT 5186 5185 5187 CONECT 5187 5182 5186 5188 CONECT 5188 5187 5189 CONECT 5189 5188 CONECT 5190 5185 5191 5192 CONECT 5191 5190 5194 5200 CONECT 5192 5190 5193 CONECT 5193 5192 5194 CONECT 5194 5191 5193 5195 CONECT 5195 5194 5196 CONECT 5196 5195 5197 5198 CONECT 5197 5196 CONECT 5198 5196 5199 5200 CONECT 5199 5198 CONECT 5200 5191 5198 CONECT 5201 1539 5206 5207 5208 CONECT 5202 1598 5205 5207 5208 CONECT 5203 5205 5206 5208 5227 CONECT 5203 5235 CONECT 5204 1573 5205 5206 5207 CONECT 5205 5202 5203 5204 CONECT 5206 5201 5203 5204 CONECT 5207 5201 5202 5204 CONECT 5208 5201 5202 5203 CONECT 5209 5210 5217 CONECT 5210 5209 5211 CONECT 5211 5210 5212 CONECT 5212 5211 5213 5216 CONECT 5213 5212 5214 5219 CONECT 5214 5213 5215 CONECT 5215 5214 5216 CONECT 5216 5212 5215 5217 CONECT 5217 5209 5216 5218 CONECT 5218 5217 CONECT 5219 5213 5220 5224 CONECT 5220 5219 5221 5225 CONECT 5221 5220 5222 5226 CONECT 5222 5221 5223 5224 CONECT 5223 5222 CONECT 5224 5219 5222 CONECT 5225 5220 CONECT 5226 5221 CONECT 5227 5203 CONECT 5235 5203 CONECT 5236 5647 CONECT 5561 5110 CONECT 5647 5236 MASTER 393 0 5 27 21 0 0 6 5699 1 127 50 END