HEADER VIRAL PROTEIN 08-FEB-25 9N8E TITLE CRYSTAL STRUCTURE OF EBOV GLYCOPROTEIN WITH MODIFIED HR1C (L579P) AND TITLE 2 HR2 STALK COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ENVELOPE GLYCOPROTEIN GP2; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EBOLA VIRUS - MAYINGA, ZAIRE, 1976, EBOLA VIRUS SOURCE 3 - MAYINGA; SOURCE 4 ORGANISM_TAXID: 128952; SOURCE 5 GENE: GP; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: EBOLA VIRUS - MAYINGA, ZAIRE, 1976; SOURCE 11 ORGANISM_TAXID: 128952; SOURCE 12 GENE: GP; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS EBOLA VIRUS, VIRAL PROTEIN, PREFUSION, GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.Z.LEE,R.L.STANFIELD,I.A.WILSON,J.ZHU REVDAT 1 18-FEB-26 9N8E 0 JRNL AUTH Y.Z.LEE,R.L.STANFIELD,I.A.WILSON,J.ZHU JRNL TITL CRYSTAL STRUCTURE OF EBOV GLYCOPROTEIN WITH MODIFIED HR1C JRNL TITL 2 (L579P) AND HR2 STALK JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21RC1_5127 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 17082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.790 REMARK 3 FREE R VALUE TEST SET COUNT : 1672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5700 - 7.3100 0.99 1372 157 0.2075 0.2239 REMARK 3 2 7.3000 - 5.8100 1.00 1310 143 0.2351 0.2415 REMARK 3 3 5.8000 - 5.0700 1.00 1309 147 0.2037 0.2197 REMARK 3 4 5.0700 - 4.6100 0.99 1272 141 0.1758 0.1806 REMARK 3 5 4.6100 - 4.2800 1.00 1295 143 0.1756 0.1468 REMARK 3 6 4.2800 - 4.0300 1.00 1284 138 0.1898 0.1871 REMARK 3 7 4.0300 - 3.8300 1.00 1266 142 0.2111 0.2023 REMARK 3 8 3.8300 - 3.6600 1.00 1272 138 0.2254 0.2633 REMARK 3 9 3.6600 - 3.5200 1.00 1270 143 0.2516 0.2864 REMARK 3 10 3.5200 - 3.4000 1.00 1291 131 0.2852 0.2840 REMARK 3 11 3.4000 - 3.2900 1.00 1263 132 0.3074 0.3142 REMARK 3 12 3.2900 - 3.2000 0.96 1206 117 0.3611 0.3299 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.409 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.219 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 113.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 120.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3322 REMARK 3 ANGLE : 1.604 4515 REMARK 3 CHIRALITY : 0.089 530 REMARK 3 PLANARITY : 0.014 568 REMARK 3 DIHEDRAL : 14.251 1140 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9N8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-25. REMARK 100 THE DEPOSITION ID IS D_1000292636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17104 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE-CITRIC ACID PH4.5 REMARK 280 ,12% PEG-6000, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 37730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -57.23700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 99.13739 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -114.47400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 200 REMARK 465 GLU A 201 REMARK 465 PRO A 202 REMARK 465 VAL A 203 REMARK 465 ASN A 204 REMARK 465 ALA A 205 REMARK 465 THR A 206 REMARK 465 GLU A 207 REMARK 465 ASP A 208 REMARK 465 PRO A 209 REMARK 465 LYS A 294 REMARK 465 LYS A 295 REMARK 465 ASN A 296 REMARK 465 LEU A 297 REMARK 465 THR A 298 REMARK 465 ARG A 299 REMARK 465 LYS A 300 REMARK 465 ILE A 301 REMARK 465 VAL A 310A REMARK 465 SER A 310B REMARK 465 ASN A 310C REMARK 465 GLY A 310D REMARK 465 ALA A 310E REMARK 465 LYS A 310F REMARK 465 ASN A 310G REMARK 465 ILE A 310H REMARK 465 SER A 310I REMARK 465 GLY A 310J REMARK 465 GLN A 310K REMARK 465 SER A 310L REMARK 465 PRO A 310M REMARK 465 ALA A 310N REMARK 465 ARG A 310O REMARK 465 THR A 310P REMARK 465 SER A 310Q REMARK 465 SER A 310R REMARK 465 ASP A 310S REMARK 465 PRO A 310T REMARK 465 GLY A 310U REMARK 465 THR A 310V REMARK 465 ASN A 310W REMARK 465 THR A 310X REMARK 465 THR A 310Y REMARK 465 THR A 310Z REMARK 465 GLU A 311A REMARK 465 ASP A 311B REMARK 465 HIS A 311C REMARK 465 LYS A 311D REMARK 465 ILE A 311E REMARK 465 MET A 311F REMARK 465 ALA A 311G REMARK 465 SER A 311H REMARK 465 GLU A 311I REMARK 465 ASN A 311J REMARK 465 SER A 311K REMARK 465 SER A 311L REMARK 465 ALA A 311M REMARK 465 MET A 311N REMARK 465 VAL A 311O REMARK 465 GLN A 311P REMARK 465 VAL A 311Q REMARK 465 HIS A 311R REMARK 465 SER A 311S REMARK 465 GLN A 311T REMARK 465 GLY A 311U REMARK 465 ARG A 311V REMARK 465 GLU A 311W REMARK 465 ALA A 311X REMARK 465 ALA A 311Y REMARK 465 VAL A 311Z REMARK 465 SER A 312A REMARK 465 HIS A 312B REMARK 465 LEU A 312C REMARK 465 THR A 312D REMARK 465 THR A 312E REMARK 465 LEU A 312F REMARK 465 ALA A 312G REMARK 465 THR A 312H REMARK 465 ILE A 312I REMARK 465 SER A 312J REMARK 465 THR A 312K REMARK 465 SER A 312L REMARK 465 PRO A 312M REMARK 465 GLN A 312N REMARK 465 SER A 312O REMARK 465 LEU A 312P REMARK 465 THR A 312Q REMARK 465 THR A 312R REMARK 465 LYS A 312S REMARK 465 PRO A 312T REMARK 465 GLY A 312U REMARK 465 PRO A 312V REMARK 465 ASP A 312W REMARK 465 ASN A 312X REMARK 465 SER A 312Y REMARK 465 THR A 312Z REMARK 465 HIS A 313A REMARK 465 ASN A 313B REMARK 465 THR A 313C REMARK 465 PRO A 313D REMARK 465 VAL A 313E REMARK 465 TYR A 313F REMARK 465 LYS A 313G REMARK 465 LEU A 313H REMARK 465 ASP A 313I REMARK 465 ILE A 313J REMARK 465 SER A 313K REMARK 465 GLU A 313L REMARK 465 ALA A 313M REMARK 465 THR A 313N REMARK 465 GLN A 313O REMARK 465 VAL A 313P REMARK 465 GLU A 313Q REMARK 465 GLN A 313R REMARK 465 HIS A 313S REMARK 465 HIS A 313T REMARK 465 ARG A 313U REMARK 465 ARG A 313V REMARK 465 THR A 313W REMARK 465 ASP A 313X REMARK 465 ASN A 313Y REMARK 465 ASP A 313Z REMARK 465 SER A 314A REMARK 465 THR A 314B REMARK 465 ALA A 314C REMARK 465 SER A 314D REMARK 465 ASP A 314E REMARK 465 THR A 314F REMARK 465 PRO A 314G REMARK 465 SER A 314H REMARK 465 ALA A 314I REMARK 465 THR A 314J REMARK 465 THR A 314K REMARK 465 ALA A 314L REMARK 465 ALA A 314M REMARK 465 GLY A 314N REMARK 465 PRO A 314O REMARK 465 PRO A 314P REMARK 465 LYS A 314Q REMARK 465 ALA A 314R REMARK 465 GLU A 314S REMARK 465 ASN A 314T REMARK 465 THR A 314U REMARK 465 ASN A 314V REMARK 465 THR A 314W REMARK 465 SER A 314X REMARK 465 LYS A 314Y REMARK 465 SER A 314Z REMARK 465 THR A 315A REMARK 465 ASP A 315B REMARK 465 PHE A 315C REMARK 465 LEU A 315D REMARK 465 ASP A 315E REMARK 465 PRO A 315F REMARK 465 ALA A 315G REMARK 465 THR A 315H REMARK 465 THR A 315I REMARK 465 THR A 315J REMARK 465 SER A 315K REMARK 465 PRO A 315L REMARK 465 GLN A 315M REMARK 465 ASN A 315N REMARK 465 HIS A 315O REMARK 465 SER A 315P REMARK 465 GLU A 315Q REMARK 465 THR A 315R REMARK 465 ALA A 315S REMARK 465 GLY A 315T REMARK 465 ASN A 315U REMARK 465 ASN A 315V REMARK 465 ASN A 315W REMARK 465 THR A 315X REMARK 465 HIS A 315Y REMARK 465 HIS A 315Z REMARK 465 GLN A 316A REMARK 465 ASP A 316B REMARK 465 THR A 316C REMARK 465 GLY A 316D REMARK 465 GLU A 316E REMARK 465 GLU A 316F REMARK 465 SER A 316G REMARK 465 ALA A 316H REMARK 465 SER A 316I REMARK 465 SER A 316J REMARK 465 GLY A 316K REMARK 465 LYS A 316L REMARK 465 LEU A 316M REMARK 465 GLY A 316N REMARK 465 LEU A 316O REMARK 465 ILE A 316P REMARK 465 THR A 316Q REMARK 465 ASN A 316R REMARK 465 THR A 316S REMARK 465 ILE A 316T REMARK 465 ALA A 316U REMARK 465 GLY A 316V REMARK 465 VAL A 316W REMARK 465 ALA A 316X REMARK 465 GLY A 316Y REMARK 465 LEU A 316Z REMARK 465 ILE A 317A REMARK 465 THR A 317B REMARK 465 GLY A 317C REMARK 465 GLY A 317D REMARK 465 ARG A 317E REMARK 465 ARG A 317F REMARK 465 THR A 317G REMARK 465 ARG A 317H REMARK 465 ARG A 317I REMARK 465 THR B 634 REMARK 465 LEU B 635 REMARK 465 PRO B 636 REMARK 465 ASP B 637 REMARK 465 ALA B 638 REMARK 465 SER B 639 REMARK 465 GLY B 640 REMARK 465 TYR B 641 REMARK 465 ILE B 642 REMARK 465 PRO B 643 REMARK 465 GLU B 644 REMARK 465 ALA B 645 REMARK 465 PRO B 646 REMARK 465 ARG B 647 REMARK 465 ASP B 648 REMARK 465 GLY B 649 REMARK 465 GLN B 650 REMARK 465 ALA B 651 REMARK 465 TYR B 652 REMARK 465 VAL B 653 REMARK 465 ARG B 654 REMARK 465 LYS B 655 REMARK 465 ASP B 656 REMARK 465 GLY B 657 REMARK 465 GLU B 658 REMARK 465 TRP B 659 REMARK 465 VAL B 660 REMARK 465 LEU B 661 REMARK 465 LEU B 662 REMARK 465 SER B 663 REMARK 465 THR B 664 REMARK 465 PHE B 665 REMARK 465 LEU B 666 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 127 NH2 ARG B 580 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 184 CA - CB - CG ANGL. DEV. = 19.0 DEGREES REMARK 500 LEU B 554 CA - CB - CG ANGL. DEV. = 22.0 DEGREES REMARK 500 LEU B 554 CB - CG - CD2 ANGL. DEV. = -11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 162 -158.67 -115.07 REMARK 500 SER A 211 61.87 -107.32 REMARK 500 GLU A 229 53.49 -98.08 REMARK 500 ASN A 268 53.65 -115.09 REMARK 500 THR A 283 31.76 -152.39 REMARK 500 GLU A 304 -64.61 -91.29 REMARK 500 UNK A 357 38.25 178.27 REMARK 500 UNK A 358 78.77 -34.47 REMARK 500 UNK A 359 -138.49 -74.40 REMARK 500 ASN B 550 38.92 -87.54 REMARK 500 LEU B 604 -5.34 75.93 REMARK 500 CYS B 609 55.08 -94.08 REMARK 500 REMARK 500 REMARK: NULL DBREF 9N8E A 33 317I UNP Q05320 VGP_EBOZM 33 501 DBREF 9N8E A 356 361 PDB 9N8E 9N8E 356 361 DBREF 9N8E B 502 637 UNP Q05320 VGP_EBOZM 502 637 SEQADV 9N8E ALA A 42 UNP Q05320 THR 42 CONFLICT SEQADV 9N8E PRO B 579 UNP Q05320 LEU 579 ENGINEERED MUTATION SEQADV 9N8E LEU B 615 UNP Q05320 TRP 615 CONFLICT SEQADV 9N8E ALA B 638 UNP Q05320 EXPRESSION TAG SEQADV 9N8E SER B 639 UNP Q05320 EXPRESSION TAG SEQADV 9N8E GLY B 640 UNP Q05320 EXPRESSION TAG SEQADV 9N8E TYR B 641 UNP Q05320 EXPRESSION TAG SEQADV 9N8E ILE B 642 UNP Q05320 EXPRESSION TAG SEQADV 9N8E PRO B 643 UNP Q05320 EXPRESSION TAG SEQADV 9N8E GLU B 644 UNP Q05320 EXPRESSION TAG SEQADV 9N8E ALA B 645 UNP Q05320 EXPRESSION TAG SEQADV 9N8E PRO B 646 UNP Q05320 EXPRESSION TAG SEQADV 9N8E ARG B 647 UNP Q05320 EXPRESSION TAG SEQADV 9N8E ASP B 648 UNP Q05320 EXPRESSION TAG SEQADV 9N8E GLY B 649 UNP Q05320 EXPRESSION TAG SEQADV 9N8E GLN B 650 UNP Q05320 EXPRESSION TAG SEQADV 9N8E ALA B 651 UNP Q05320 EXPRESSION TAG SEQADV 9N8E TYR B 652 UNP Q05320 EXPRESSION TAG SEQADV 9N8E VAL B 653 UNP Q05320 EXPRESSION TAG SEQADV 9N8E ARG B 654 UNP Q05320 EXPRESSION TAG SEQADV 9N8E LYS B 655 UNP Q05320 EXPRESSION TAG SEQADV 9N8E ASP B 656 UNP Q05320 EXPRESSION TAG SEQADV 9N8E GLY B 657 UNP Q05320 EXPRESSION TAG SEQADV 9N8E GLU B 658 UNP Q05320 EXPRESSION TAG SEQADV 9N8E TRP B 659 UNP Q05320 EXPRESSION TAG SEQADV 9N8E VAL B 660 UNP Q05320 EXPRESSION TAG SEQADV 9N8E LEU B 661 UNP Q05320 EXPRESSION TAG SEQADV 9N8E LEU B 662 UNP Q05320 EXPRESSION TAG SEQADV 9N8E SER B 663 UNP Q05320 EXPRESSION TAG SEQADV 9N8E THR B 664 UNP Q05320 EXPRESSION TAG SEQADV 9N8E PHE B 665 UNP Q05320 EXPRESSION TAG SEQADV 9N8E LEU B 666 UNP Q05320 EXPRESSION TAG SEQRES 1 A 475 ILE PRO LEU GLY VAL ILE HIS ASN SER ALA LEU GLN VAL SEQRES 2 A 475 SER ASP VAL ASP LYS LEU VAL CYS ARG ASP LYS LEU SER SEQRES 3 A 475 SER THR ASN GLN LEU ARG SER VAL GLY LEU ASN LEU GLU SEQRES 4 A 475 GLY ASN GLY VAL ALA THR ASP VAL PRO SER ALA THR LYS SEQRES 5 A 475 ARG TRP GLY PHE ARG SER GLY VAL PRO PRO LYS VAL VAL SEQRES 6 A 475 ASN TYR GLU ALA GLY GLU TRP ALA GLU ASN CYS TYR ASN SEQRES 7 A 475 LEU GLU ILE LYS LYS PRO ASP GLY SER GLU CYS LEU PRO SEQRES 8 A 475 ALA ALA PRO ASP GLY ILE ARG GLY PHE PRO ARG CYS ARG SEQRES 9 A 475 TYR VAL HIS LYS VAL SER GLY THR GLY PRO CYS ALA GLY SEQRES 10 A 475 ASP PHE ALA PHE HIS LYS GLU GLY ALA PHE PHE LEU TYR SEQRES 11 A 475 ASP ARG LEU ALA SER THR VAL ILE TYR ARG GLY THR THR SEQRES 12 A 475 PHE ALA GLU GLY VAL VAL ALA PHE LEU ILE LEU PRO GLN SEQRES 13 A 475 ALA LYS LYS ASP PHE PHE SER SER HIS PRO LEU ARG GLU SEQRES 14 A 475 PRO VAL ASN ALA THR GLU ASP PRO SER SER GLY TYR TYR SEQRES 15 A 475 SER THR THR ILE ARG TYR GLN ALA THR GLY PHE GLY THR SEQRES 16 A 475 ASN GLU THR GLU TYR LEU PHE GLU VAL ASP ASN LEU THR SEQRES 17 A 475 TYR VAL GLN LEU GLU SER ARG PHE THR PRO GLN PHE LEU SEQRES 18 A 475 LEU GLN LEU ASN GLU THR ILE TYR THR SER GLY LYS ARG SEQRES 19 A 475 SER ASN THR THR GLY LYS LEU ILE TRP LYS VAL ASN PRO SEQRES 20 A 475 GLU ILE ASP THR THR ILE GLY GLU TRP ALA PHE TRP GLU SEQRES 21 A 475 THR LYS LYS ASN LEU THR ARG LYS ILE ARG SER GLU GLU SEQRES 22 A 475 LEU SER PHE THR VAL VAL SER ASN GLY ALA LYS ASN ILE SEQRES 23 A 475 SER GLY GLN SER PRO ALA ARG THR SER SER ASP PRO GLY SEQRES 24 A 475 THR ASN THR THR THR GLU ASP HIS LYS ILE MET ALA SER SEQRES 25 A 475 GLU ASN SER SER ALA MET VAL GLN VAL HIS SER GLN GLY SEQRES 26 A 475 ARG GLU ALA ALA VAL SER HIS LEU THR THR LEU ALA THR SEQRES 27 A 475 ILE SER THR SER PRO GLN SER LEU THR THR LYS PRO GLY SEQRES 28 A 475 PRO ASP ASN SER THR HIS ASN THR PRO VAL TYR LYS LEU SEQRES 29 A 475 ASP ILE SER GLU ALA THR GLN VAL GLU GLN HIS HIS ARG SEQRES 30 A 475 ARG THR ASP ASN ASP SER THR ALA SER ASP THR PRO SER SEQRES 31 A 475 ALA THR THR ALA ALA GLY PRO PRO LYS ALA GLU ASN THR SEQRES 32 A 475 ASN THR SER LYS SER THR ASP PHE LEU ASP PRO ALA THR SEQRES 33 A 475 THR THR SER PRO GLN ASN HIS SER GLU THR ALA GLY ASN SEQRES 34 A 475 ASN ASN THR HIS HIS GLN ASP THR GLY GLU GLU SER ALA SEQRES 35 A 475 SER SER GLY LYS LEU GLY LEU ILE THR ASN THR ILE ALA SEQRES 36 A 475 GLY VAL ALA GLY LEU ILE THR GLY GLY ARG ARG THR ARG SEQRES 37 A 475 ARG UNK UNK UNK UNK UNK UNK SEQRES 1 B 165 GLU ALA ILE VAL ASN ALA GLN PRO LYS CYS ASN PRO ASN SEQRES 2 B 165 LEU HIS TYR TRP THR THR GLN ASP GLU GLY ALA ALA ILE SEQRES 3 B 165 GLY LEU ALA TRP ILE PRO TYR PHE GLY PRO ALA ALA GLU SEQRES 4 B 165 GLY ILE TYR ILE GLU GLY LEU MET HIS ASN GLN ASP GLY SEQRES 5 B 165 LEU ILE CYS GLY LEU ARG GLN LEU ALA ASN GLU THR THR SEQRES 6 B 165 GLN ALA LEU GLN LEU PHE LEU ARG ALA THR THR GLU PRO SEQRES 7 B 165 ARG THR PHE SER ILE LEU ASN ARG LYS ALA ILE ASP PHE SEQRES 8 B 165 LEU LEU GLN ARG TRP GLY GLY THR CYS HIS ILE LEU GLY SEQRES 9 B 165 PRO ASP CYS CYS ILE GLU PRO HIS ASP LEU THR LYS ASN SEQRES 10 B 165 ILE THR ASP LYS ILE ASP GLN ILE ILE HIS ASP PHE VAL SEQRES 11 B 165 ASP LYS THR LEU PRO ASP ALA SER GLY TYR ILE PRO GLU SEQRES 12 B 165 ALA PRO ARG ASP GLY GLN ALA TYR VAL ARG LYS ASP GLY SEQRES 13 B 165 GLU TRP VAL LEU LEU SER THR PHE LEU HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET MAN D 6 11 HET NAG A 401 14 HET NAG B 701 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 4 MAN 3(C6 H12 O6) HELIX 1 AA1 SER A 59 ASN A 61 5 3 HELIX 2 AA2 GLU A 71 GLY A 74 5 4 HELIX 3 AA3 ASP A 78 ARG A 85 1 8 HELIX 4 AA4 PRO A 187 LYS A 191 5 5 HELIX 5 AA5 THR A 249 GLY A 264 1 16 HELIX 6 AA6 ALA A 289 THR A 293 5 5 HELIX 7 AA7 ALA B 538 GLY B 541 5 4 HELIX 8 AA8 ASN B 550 ASP B 552 5 3 HELIX 9 AA9 GLY B 553 THR B 576 1 24 HELIX 10 AB1 SER B 583 GLY B 598 1 16 HELIX 11 AB2 PRO B 612 ILE B 626 1 15 SHEET 1 AA1 2 GLY A 36 HIS A 39 0 SHEET 2 AA1 2 ALA A 42 VAL A 45 -1 O GLN A 44 N VAL A 37 SHEET 1 AA2 6 LEU A 63 ASN A 69 0 SHEET 2 AA2 6 ALA A 177 ILE A 185 -1 O VAL A 180 N LEU A 68 SHEET 3 AA2 6 PHE A 159 LEU A 161 -1 N LEU A 161 O ALA A 177 SHEET 4 AA2 6 LEU A 165 SER A 167 -1 O SER A 167 N PHE A 160 SHEET 5 AA2 6 VAL A 96 ASN A 98 -1 N VAL A 97 O ALA A 166 SHEET 6 AA2 6 ARG B 580 THR B 581 1 O THR B 581 N VAL A 96 SHEET 1 AA3 2 TRP A 86 ARG A 89 0 SHEET 2 AA3 2 PHE A 151 HIS A 154 -1 O PHE A 153 N GLY A 87 SHEET 1 AA4 3 ALA A 101 GLU A 103 0 SHEET 2 AA4 3 LEU B 515 THR B 520 -1 O TRP B 518 N GLY A 102 SHEET 3 AA4 3 TYR B 543 MET B 548 -1 O ILE B 544 N THR B 519 SHEET 1 AA5 6 ALA A 105 LYS A 114 0 SHEET 2 AA5 6 CYS A 135 THR A 144 1 O HIS A 139 N CYS A 108 SHEET 3 AA5 6 THR A 216 THR A 223 1 O TYR A 220 N SER A 142 SHEET 4 AA5 6 GLU A 231 ASP A 237 -1 O LEU A 233 N GLN A 221 SHEET 5 AA5 6 THR A 240 GLN A 243 -1 O THR A 240 N VAL A 236 SHEET 6 AA5 6 LEU A 273 TRP A 275 1 O LEU A 273 N TYR A 241 SSBOND 1 CYS A 53 CYS B 609 1555 1555 2.04 SSBOND 2 CYS A 108 CYS A 135 1555 1555 2.08 SSBOND 3 CYS A 121 CYS A 147 1555 1555 2.04 SSBOND 4 CYS B 511 CYS B 556 1555 1555 2.06 SSBOND 5 CYS B 601 CYS B 608 1555 1555 2.05 LINK ND2 ASN A 228 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN A 257 C1 NAG C 1 1555 1555 1.47 LINK ND2 ASN B 563 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN B 618 C1 NAG B 701 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 6 1555 1555 1.44 LINK O3 MAN D 4 C1 MAN D 5 1555 1555 1.44 CRYST1 114.474 114.474 133.381 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008736 0.005044 0.000000 0.00000 SCALE2 0.000000 0.010087 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007497 0.00000 CONECT 154 2920 CONECT 573 778 CONECT 676 868 CONECT 778 573 CONECT 868 676 CONECT 1427 3222 CONECT 1678 3122 CONECT 2151 2501 CONECT 2501 2151 CONECT 2554 3150 CONECT 2863 2914 CONECT 2914 2863 CONECT 2920 154 CONECT 2994 3236 CONECT 3122 1678 3123 3133 CONECT 3123 3122 3124 3130 CONECT 3124 3123 3125 3131 CONECT 3125 3124 3126 3132 CONECT 3126 3125 3127 3133 CONECT 3127 3126 3134 CONECT 3128 3129 3130 3135 CONECT 3129 3128 CONECT 3130 3123 3128 CONECT 3131 3124 CONECT 3132 3125 3136 CONECT 3133 3122 3126 CONECT 3134 3127 CONECT 3135 3128 CONECT 3136 3132 3137 3147 CONECT 3137 3136 3138 3144 CONECT 3138 3137 3139 3145 CONECT 3139 3138 3140 3146 CONECT 3140 3139 3141 3147 CONECT 3141 3140 3148 CONECT 3142 3143 3144 3149 CONECT 3143 3142 CONECT 3144 3137 3142 CONECT 3145 3138 CONECT 3146 3139 CONECT 3147 3136 3140 CONECT 3148 3141 CONECT 3149 3142 CONECT 3150 2554 3151 3161 CONECT 3151 3150 3152 3158 CONECT 3152 3151 3153 3159 CONECT 3153 3152 3154 3160 CONECT 3154 3153 3155 3161 CONECT 3155 3154 3162 CONECT 3156 3157 3158 3163 CONECT 3157 3156 CONECT 3158 3151 3156 CONECT 3159 3152 CONECT 3160 3153 3164 CONECT 3161 3150 3154 CONECT 3162 3155 CONECT 3163 3156 CONECT 3164 3160 3165 3175 CONECT 3165 3164 3166 3172 CONECT 3166 3165 3167 3173 CONECT 3167 3166 3168 3174 CONECT 3168 3167 3169 3175 CONECT 3169 3168 3176 CONECT 3170 3171 3172 3177 CONECT 3171 3170 CONECT 3172 3165 3170 CONECT 3173 3166 CONECT 3174 3167 3178 CONECT 3175 3164 3168 CONECT 3176 3169 CONECT 3177 3170 CONECT 3178 3174 3179 3187 CONECT 3179 3178 3180 3184 CONECT 3180 3179 3181 3185 CONECT 3181 3180 3182 3186 CONECT 3182 3181 3183 3187 CONECT 3183 3182 3188 CONECT 3184 3179 CONECT 3185 3180 3211 CONECT 3186 3181 CONECT 3187 3178 3182 CONECT 3188 3183 3189 CONECT 3189 3188 3190 3198 CONECT 3190 3189 3191 3195 CONECT 3191 3190 3192 3196 CONECT 3192 3191 3193 3197 CONECT 3193 3192 3194 3198 CONECT 3194 3193 3199 CONECT 3195 3190 CONECT 3196 3191 3200 CONECT 3197 3192 CONECT 3198 3189 3193 CONECT 3199 3194 CONECT 3200 3196 3201 3209 CONECT 3201 3200 3202 3206 CONECT 3202 3201 3203 3207 CONECT 3203 3202 3204 3208 CONECT 3204 3203 3205 3209 CONECT 3205 3204 3210 CONECT 3206 3201 CONECT 3207 3202 CONECT 3208 3203 CONECT 3209 3200 3204 CONECT 3210 3205 CONECT 3211 3185 3212 3220 CONECT 3212 3211 3213 3217 CONECT 3213 3212 3214 3218 CONECT 3214 3213 3215 3219 CONECT 3215 3214 3216 3220 CONECT 3216 3215 3221 CONECT 3217 3212 CONECT 3218 3213 CONECT 3219 3214 CONECT 3220 3211 3215 CONECT 3221 3216 CONECT 3222 1427 3223 3233 CONECT 3223 3222 3224 3230 CONECT 3224 3223 3225 3231 CONECT 3225 3224 3226 3232 CONECT 3226 3225 3227 3233 CONECT 3227 3226 3234 CONECT 3228 3229 3230 3235 CONECT 3229 3228 CONECT 3230 3223 3228 CONECT 3231 3224 CONECT 3232 3225 CONECT 3233 3222 3226 CONECT 3234 3227 CONECT 3235 3228 CONECT 3236 2994 3237 3247 CONECT 3237 3236 3238 3244 CONECT 3238 3237 3239 3245 CONECT 3239 3238 3240 3246 CONECT 3240 3239 3241 3247 CONECT 3241 3240 3248 CONECT 3242 3243 3244 3249 CONECT 3243 3242 CONECT 3244 3237 3242 CONECT 3245 3238 CONECT 3246 3239 CONECT 3247 3236 3240 CONECT 3248 3241 CONECT 3249 3242 MASTER 526 0 10 11 19 0 0 6 3247 2 142 50 END