HEADER RNA 13-FEB-25 9NBH TITLE RNA SCAFFOLD ATTACHED TO 8-OXOGUANINE RIBOSWITCH APTAMER CORE ONLY COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (88-MER); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS VIRAL RNA, SCAFFOLD, ENGINEERING, RNA EXPDTA ELECTRON MICROSCOPY AUTHOR C.P.JONES,A.R.FERRE-D'AMARE REVDAT 1 04-MAR-26 9NBH 0 JRNL AUTH C.P.JONES,A.R.FERRE-D'AMARE JRNL TITL SYMMETRIC SCAFFOLDS ENABLE DE NOVO MODELLING OF RNA BY JRNL TITL 2 CRYOEM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.520 REMARK 3 NUMBER OF PARTICLES : 482149 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9NBH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-25. REMARK 100 THE DEPOSITION ID IS D_1000292981. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SCAFFOLD RNA ATTACHED TO 8 REMARK 245 -OXOGUANINE APTAMER BOUND TO 8- REMARK 245 OXOGUANINE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 C A 31 REMARK 465 C A 32 REMARK 465 U A 33 REMARK 465 G A 34 REMARK 465 U A 35 REMARK 465 U A 36 REMARK 465 C A 37 REMARK 465 G A 38 REMARK 465 U A 39 REMARK 465 A A 40 REMARK 465 U A 41 REMARK 465 A A 42 REMARK 465 A A 43 REMARK 465 C A 44 REMARK 465 C A 45 REMARK 465 C A 46 REMARK 465 C A 47 REMARK 465 G A 48 REMARK 465 A A 49 REMARK 465 U A 50 REMARK 465 A A 51 REMARK 465 A A 52 REMARK 465 U A 53 REMARK 465 C A 54 REMARK 465 G A 55 REMARK 465 G A 56 REMARK 465 U A 57 REMARK 465 U A 58 REMARK 465 C A 59 REMARK 465 G A 60 REMARK 465 G A 61 REMARK 465 G A 62 REMARK 465 G A 63 REMARK 465 G A 64 REMARK 465 C A 65 REMARK 465 U A 66 REMARK 465 C A 67 REMARK 465 U A 68 REMARK 465 A A 69 REMARK 465 C A 70 REMARK 465 U A 71 REMARK 465 G A 72 REMARK 465 G A 73 REMARK 465 G A 74 REMARK 465 G A 75 REMARK 465 U A 76 REMARK 465 C A 77 REMARK 465 C A 78 REMARK 465 G A 79 REMARK 465 U A 80 REMARK 465 A A 81 REMARK 465 A A 82 REMARK 465 A A 83 REMARK 465 A A 84 REMARK 465 U A 85 REMARK 465 C A 86 REMARK 465 C A 87 REMARK 465 U A 88 REMARK 465 A A 89 REMARK 465 A A 90 REMARK 465 C A 91 REMARK 465 U A 92 REMARK 465 A A 93 REMARK 465 C A 94 REMARK 465 G A 95 REMARK 465 A A 96 REMARK 465 A A 97 REMARK 465 C A 98 REMARK 465 G A 99 REMARK 465 G A 100 REMARK 465 G A 101 REMARK 465 A A 102 REMARK 465 C B 31 REMARK 465 C B 32 REMARK 465 U B 33 REMARK 465 G B 34 REMARK 465 U B 35 REMARK 465 U B 36 REMARK 465 C B 37 REMARK 465 G B 38 REMARK 465 U B 39 REMARK 465 A B 40 REMARK 465 U B 41 REMARK 465 A B 42 REMARK 465 A B 43 REMARK 465 C B 44 REMARK 465 C B 45 REMARK 465 C B 46 REMARK 465 C B 47 REMARK 465 G B 48 REMARK 465 A B 49 REMARK 465 U B 50 REMARK 465 A B 51 REMARK 465 A B 52 REMARK 465 U B 53 REMARK 465 C B 54 REMARK 465 G B 55 REMARK 465 G B 56 REMARK 465 U B 57 REMARK 465 U B 58 REMARK 465 C B 59 REMARK 465 G B 60 REMARK 465 G B 61 REMARK 465 G B 62 REMARK 465 G B 63 REMARK 465 G B 64 REMARK 465 C B 65 REMARK 465 U B 66 REMARK 465 C B 67 REMARK 465 U B 68 REMARK 465 A B 69 REMARK 465 C B 70 REMARK 465 U B 71 REMARK 465 G B 72 REMARK 465 G B 73 REMARK 465 G B 74 REMARK 465 G B 75 REMARK 465 U B 76 REMARK 465 C B 77 REMARK 465 C B 78 REMARK 465 G B 79 REMARK 465 U B 80 REMARK 465 A B 81 REMARK 465 A B 82 REMARK 465 A B 83 REMARK 465 A B 84 REMARK 465 U B 85 REMARK 465 C B 86 REMARK 465 C B 87 REMARK 465 U B 88 REMARK 465 A B 89 REMARK 465 A B 90 REMARK 465 C B 91 REMARK 465 U B 92 REMARK 465 A B 93 REMARK 465 C B 94 REMARK 465 G B 95 REMARK 465 A B 96 REMARK 465 A B 97 REMARK 465 C B 98 REMARK 465 G B 99 REMARK 465 G B 100 REMARK 465 G B 101 REMARK 465 A B 102 REMARK 465 C C 31 REMARK 465 C C 32 REMARK 465 U C 33 REMARK 465 G C 34 REMARK 465 U C 35 REMARK 465 U C 36 REMARK 465 C C 37 REMARK 465 G C 38 REMARK 465 U C 39 REMARK 465 A C 40 REMARK 465 U C 41 REMARK 465 A C 42 REMARK 465 A C 43 REMARK 465 C C 44 REMARK 465 C C 45 REMARK 465 C C 46 REMARK 465 C C 47 REMARK 465 G C 48 REMARK 465 A C 49 REMARK 465 U C 50 REMARK 465 A C 51 REMARK 465 A C 52 REMARK 465 U C 53 REMARK 465 C C 54 REMARK 465 G C 55 REMARK 465 G C 56 REMARK 465 U C 57 REMARK 465 U C 58 REMARK 465 C C 59 REMARK 465 G C 60 REMARK 465 G C 61 REMARK 465 G C 62 REMARK 465 G C 63 REMARK 465 G C 64 REMARK 465 C C 65 REMARK 465 U C 66 REMARK 465 C C 67 REMARK 465 U C 68 REMARK 465 A C 69 REMARK 465 C C 70 REMARK 465 U C 71 REMARK 465 G C 72 REMARK 465 G C 73 REMARK 465 G C 74 REMARK 465 G C 75 REMARK 465 U C 76 REMARK 465 C C 77 REMARK 465 C C 78 REMARK 465 G C 79 REMARK 465 U C 80 REMARK 465 A C 81 REMARK 465 A C 82 REMARK 465 A C 83 REMARK 465 A C 84 REMARK 465 U C 85 REMARK 465 C C 86 REMARK 465 C C 87 REMARK 465 U C 88 REMARK 465 A C 89 REMARK 465 A C 90 REMARK 465 C C 91 REMARK 465 U C 92 REMARK 465 A C 93 REMARK 465 C C 94 REMARK 465 G C 95 REMARK 465 A C 96 REMARK 465 A C 97 REMARK 465 C C 98 REMARK 465 G C 99 REMARK 465 G C 100 REMARK 465 G C 101 REMARK 465 A C 102 REMARK 465 C D 31 REMARK 465 C D 32 REMARK 465 U D 33 REMARK 465 G D 34 REMARK 465 U D 35 REMARK 465 U D 36 REMARK 465 C D 37 REMARK 465 G D 38 REMARK 465 U D 39 REMARK 465 A D 40 REMARK 465 U D 41 REMARK 465 A D 42 REMARK 465 A D 43 REMARK 465 C D 44 REMARK 465 C D 45 REMARK 465 C D 46 REMARK 465 C D 47 REMARK 465 G D 48 REMARK 465 A D 49 REMARK 465 U D 50 REMARK 465 A D 51 REMARK 465 A D 52 REMARK 465 U D 53 REMARK 465 C D 54 REMARK 465 G D 55 REMARK 465 G D 56 REMARK 465 U D 57 REMARK 465 U D 58 REMARK 465 C D 59 REMARK 465 G D 60 REMARK 465 G D 61 REMARK 465 G D 62 REMARK 465 G D 63 REMARK 465 G D 64 REMARK 465 C D 65 REMARK 465 U D 66 REMARK 465 C D 67 REMARK 465 U D 68 REMARK 465 A D 69 REMARK 465 C D 70 REMARK 465 U D 71 REMARK 465 G D 72 REMARK 465 G D 73 REMARK 465 G D 74 REMARK 465 G D 75 REMARK 465 U D 76 REMARK 465 C D 77 REMARK 465 C D 78 REMARK 465 G D 79 REMARK 465 U D 80 REMARK 465 A D 81 REMARK 465 A D 82 REMARK 465 A D 83 REMARK 465 A D 84 REMARK 465 U D 85 REMARK 465 C D 86 REMARK 465 C D 87 REMARK 465 U D 88 REMARK 465 A D 89 REMARK 465 A D 90 REMARK 465 C D 91 REMARK 465 U D 92 REMARK 465 A D 93 REMARK 465 C D 94 REMARK 465 G D 95 REMARK 465 A D 96 REMARK 465 A D 97 REMARK 465 C D 98 REMARK 465 G D 99 REMARK 465 G D 100 REMARK 465 G D 101 REMARK 465 A D 102 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 G A 120 O HOH A 301 2.16 REMARK 500 O6 G B 120 O HOH B 301 2.17 REMARK 500 O6 G D 120 O HOH D 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 137 OP1 REMARK 620 2 HOH A 320 O 82.2 REMARK 620 3 HOH A 322 O 90.5 89.3 REMARK 620 4 HOH B 309 O 98.4 179.4 90.6 REMARK 620 5 HOH B 335 O 89.1 90.7 179.6 89.4 REMARK 620 6 HOH B 336 O 171.7 89.5 89.9 89.9 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 148 OP2 REMARK 620 2 HOH A 328 O 91.6 REMARK 620 3 HOH A 334 O 100.6 90.6 REMARK 620 4 HOH A 336 O 79.6 89.6 179.7 REMARK 620 5 HOH A 368 O 89.0 179.4 89.5 90.3 REMARK 620 6 HOH A 388 O 169.6 89.4 89.7 90.1 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 347 O REMARK 620 2 HOH A 386 O 90.1 REMARK 620 3 HOH C 325 O 90.1 89.6 REMARK 620 4 HOH D 357 O 179.9 89.9 90.0 REMARK 620 5 HOH D 384 O 89.9 179.3 89.6 90.1 REMARK 620 6 HOH D 398 O 90.0 90.4 180.0 90.0 90.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 323 O REMARK 620 2 HOH A 324 O 89.5 REMARK 620 3 HOH A 383 O 89.8 90.1 REMARK 620 4 HOH B 318 O 90.5 179.3 90.6 REMARK 620 5 HOH B 365 O 179.6 90.2 90.0 89.8 REMARK 620 6 HOH B 368 O 90.4 89.6 179.7 89.7 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 301 O REMARK 620 2 HOH A 337 O 90.3 REMARK 620 3 HOH A 355 O 90.3 89.8 REMARK 620 4 HOH A 360 O 89.6 90.0 179.8 REMARK 620 5 HOH A 399 O 89.7 179.8 90.0 90.2 REMARK 620 6 HOH A 400 O 179.7 90.0 89.8 90.3 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 307 O REMARK 620 2 HOH A 330 O 89.9 REMARK 620 3 HOH A 332 O 89.3 90.5 REMARK 620 4 A B 137 OP1 98.6 171.4 88.1 REMARK 620 5 HOH B 323 O 179.4 89.5 90.8 82.1 REMARK 620 6 HOH B 325 O 90.6 89.9 179.6 91.5 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 316 O REMARK 620 2 HOH A 361 O 89.7 REMARK 620 3 HOH B 321 O 179.3 89.6 REMARK 620 4 HOH B 324 O 90.5 90.6 89.3 REMARK 620 5 HOH B 376 O 89.8 89.7 90.4 179.6 REMARK 620 6 HOH B 388 O 90.6 179.6 90.1 89.7 90.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B 148 OP2 REMARK 620 2 HOH B 330 O 92.0 REMARK 620 3 HOH B 338 O 100.0 90.6 REMARK 620 4 HOH B 343 O 80.2 89.7 179.6 REMARK 620 5 HOH B 372 O 88.6 179.4 89.5 90.2 REMARK 620 6 HOH B 394 O 170.1 89.4 89.8 90.0 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 345 O REMARK 620 2 HOH B 389 O 90.1 REMARK 620 3 HOH C 351 O 179.9 89.9 REMARK 620 4 HOH C 389 O 89.9 179.2 90.1 REMARK 620 5 HOH C 401 O 90.0 90.4 90.0 90.4 REMARK 620 6 HOH D 318 O 90.1 89.6 90.0 89.6 179.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 301 O REMARK 620 2 HOH B 339 O 90.3 REMARK 620 3 HOH B 347 O 89.6 90.0 REMARK 620 4 HOH B 355 O 90.3 89.9 179.8 REMARK 620 5 HOH B 405 O 179.8 89.9 90.4 89.7 REMARK 620 6 HOH B 406 O 89.8 179.8 90.3 89.9 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A C 137 OP1 REMARK 620 2 HOH C 326 O 93.0 REMARK 620 3 HOH C 328 O 83.1 89.3 REMARK 620 4 HOH D 303 O 97.5 90.6 179.4 REMARK 620 5 HOH D 326 O 86.6 179.6 90.7 89.4 REMARK 620 6 HOH D 330 O 172.0 89.9 89.4 89.9 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A C 148 OP2 REMARK 620 2 HOH C 333 O 92.7 REMARK 620 3 HOH C 342 O 99.7 90.6 REMARK 620 4 HOH C 346 O 80.6 89.7 179.6 REMARK 620 5 HOH C 372 O 87.9 179.3 89.5 90.2 REMARK 620 6 HOH C 391 O 170.3 89.4 89.7 90.0 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 302 O REMARK 620 2 HOH C 314 O 89.5 REMARK 620 3 HOH C 361 O 90.4 179.8 REMARK 620 4 HOH C 369 O 89.8 90.3 89.8 REMARK 620 5 HOH C 398 O 89.6 89.9 90.0 179.3 REMARK 620 6 HOH D 319 O 179.4 90.1 90.0 89.8 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 301 O REMARK 620 2 HOH C 331 O 89.7 REMARK 620 3 HOH C 338 O 90.4 89.9 REMARK 620 4 HOH C 359 O 90.0 179.8 90.1 REMARK 620 5 HOH C 403 O 179.7 90.5 89.8 89.7 REMARK 620 6 HOH C 404 O 89.8 90.1 179.8 89.9 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 310 O REMARK 620 2 HOH C 337 O 89.3 REMARK 620 3 HOH C 341 O 90.0 90.5 REMARK 620 4 A D 137 OP1 98.2 88.3 171.7 REMARK 620 5 HOH D 321 O 179.4 90.8 89.4 82.4 REMARK 620 6 HOH D 323 O 90.6 179.6 89.9 91.3 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 320 O REMARK 620 2 HOH D 311 O 89.2 REMARK 620 3 HOH D 322 O 89.5 90.6 REMARK 620 4 HOH D 324 O 90.1 89.7 179.5 REMARK 620 5 HOH D 347 O 179.1 90.3 89.8 90.7 REMARK 620 6 HOH D 366 O 91.0 179.2 90.2 89.5 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A D 148 OP2 REMARK 620 2 HOH D 336 O 90.6 REMARK 620 3 HOH D 339 O 98.9 90.6 REMARK 620 4 HOH D 345 O 81.3 89.6 179.7 REMARK 620 5 HOH D 370 O 89.9 179.4 89.5 90.2 REMARK 620 6 HOH D 388 O 171.3 89.4 89.8 90.0 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 301 O REMARK 620 2 HOH D 335 O 90.4 REMARK 620 3 HOH D 338 O 89.7 89.9 REMARK 620 4 HOH D 343 O 90.2 90.0 179.8 REMARK 620 5 HOH D 400 O 179.7 89.8 90.5 89.7 REMARK 620 6 HOH D 401 O 89.7 179.9 90.2 90.0 90.1 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-49229 RELATED DB: EMDB REMARK 900 RNA SCAFFOLD ATTACHED TO 8-OXOGUANINE RIBOSWITCH APTAMER CORE ONLY DBREF 9NBH A 1 160 PDB 9NBH 9NBH 1 160 DBREF 9NBH B 1 160 PDB 9NBH 9NBH 1 160 DBREF 9NBH C 1 160 PDB 9NBH 9NBH 1 160 DBREF 9NBH D 1 160 PDB 9NBH 9NBH 1 160 SEQRES 1 A 160 G G G C C A C U G U U U C SEQRES 2 A 160 A C U G U U G C G C U A C SEQRES 3 A 160 A U C U C C U G U U C G U SEQRES 4 A 160 A U A A C C C C G A U A A SEQRES 5 A 160 U C G G U U C G G G G G C SEQRES 6 A 160 U C U A C U G G G G U C C SEQRES 7 A 160 G U A A A A U C C U A A C SEQRES 8 A 160 U A C G A A C G G G A G G SEQRES 9 A 160 C C A C A C G A A A G U G SEQRES 10 A 160 U G G A G U G A C C A G U SEQRES 11 A 160 G G C C C C A C C C U G A SEQRES 12 A 160 A G G U A A A C U U G U A SEQRES 13 A 160 G C G C SEQRES 1 B 160 G G G C C A C U G U U U C SEQRES 2 B 160 A C U G U U G C G C U A C SEQRES 3 B 160 A U C U C C U G U U C G U SEQRES 4 B 160 A U A A C C C C G A U A A SEQRES 5 B 160 U C G G U U C G G G G G C SEQRES 6 B 160 U C U A C U G G G G U C C SEQRES 7 B 160 G U A A A A U C C U A A C SEQRES 8 B 160 U A C G A A C G G G A G G SEQRES 9 B 160 C C A C A C G A A A G U G SEQRES 10 B 160 U G G A G U G A C C A G U SEQRES 11 B 160 G G C C C C A C C C U G A SEQRES 12 B 160 A G G U A A A C U U G U A SEQRES 13 B 160 G C G C SEQRES 1 C 160 G G G C C A C U G U U U C SEQRES 2 C 160 A C U G U U G C G C U A C SEQRES 3 C 160 A U C U C C U G U U C G U SEQRES 4 C 160 A U A A C C C C G A U A A SEQRES 5 C 160 U C G G U U C G G G G G C SEQRES 6 C 160 U C U A C U G G G G U C C SEQRES 7 C 160 G U A A A A U C C U A A C SEQRES 8 C 160 U A C G A A C G G G A G G SEQRES 9 C 160 C C A C A C G A A A G U G SEQRES 10 C 160 U G G A G U G A C C A G U SEQRES 11 C 160 G G C C C C A C C C U G A SEQRES 12 C 160 A G G U A A A C U U G U A SEQRES 13 C 160 G C G C SEQRES 1 D 160 G G G C C A C U G U U U C SEQRES 2 D 160 A C U G U U G C G C U A C SEQRES 3 D 160 A U C U C C U G U U C G U SEQRES 4 D 160 A U A A C C C C G A U A A SEQRES 5 D 160 U C G G U U C G G G G G C SEQRES 6 D 160 U C U A C U G G G G U C C SEQRES 7 D 160 G U A A A A U C C U A A C SEQRES 8 D 160 U A C G A A C G G G A G G SEQRES 9 D 160 C C A C A C G A A A G U G SEQRES 10 D 160 U G G A G U G A C C A G U SEQRES 11 D 160 G G C C C C A C C C U G A SEQRES 12 D 160 A G G U A A A C U U G U A SEQRES 13 D 160 G C G C HET MG A 201 1 HET MG A 202 1 HET MG A 203 1 HET MG A 204 1 HET MG A 205 1 HET MG B 201 1 HET MG B 202 1 HET MG B 203 1 HET MG B 204 1 HET MG B 205 1 HET MG C 201 1 HET MG C 202 1 HET MG C 203 1 HET MG C 204 1 HET MG D 201 1 HET MG D 202 1 HET MG D 203 1 HET MG D 204 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG 18(MG 2+) FORMUL 23 HOH *411(H2 O) LINK OP1 A A 137 MG MG A 202 1555 1555 1.78 LINK OP2 A A 148 MG MG A 204 1555 1555 2.26 LINK MG MG A 201 O HOH A 347 1555 1555 2.18 LINK MG MG A 201 O HOH A 386 1555 1555 2.18 LINK MG MG A 201 O HOH C 325 1555 1555 2.17 LINK MG MG A 201 O HOH D 357 1555 1555 2.18 LINK MG MG A 201 O HOH D 384 1555 1555 2.18 LINK MG MG A 201 O HOH D 398 1555 1555 2.18 LINK MG MG A 202 O HOH A 320 1555 1555 2.18 LINK MG MG A 202 O HOH A 322 1555 1555 2.17 LINK MG MG A 202 O HOH B 309 1555 1555 2.18 LINK MG MG A 202 O HOH B 335 1555 1555 2.17 LINK MG MG A 202 O HOH B 336 1555 1555 2.17 LINK MG MG A 203 O HOH A 323 1555 1555 2.18 LINK MG MG A 203 O HOH A 324 1555 1555 2.18 LINK MG MG A 203 O HOH A 383 1555 1555 2.18 LINK MG MG A 203 O HOH B 318 1555 1555 2.18 LINK MG MG A 203 O HOH B 365 1555 1555 2.18 LINK MG MG A 203 O HOH B 368 1555 1555 2.18 LINK MG MG A 204 O HOH A 328 1555 1555 2.18 LINK MG MG A 204 O HOH A 334 1555 1555 2.18 LINK MG MG A 204 O HOH A 336 1555 1555 2.18 LINK MG MG A 204 O HOH A 368 1555 1555 2.18 LINK MG MG A 204 O HOH A 388 1555 1555 2.18 LINK MG MG A 205 O HOH A 301 1555 1555 2.18 LINK MG MG A 205 O HOH A 337 1555 1555 2.18 LINK MG MG A 205 O HOH A 355 1555 1555 2.18 LINK MG MG A 205 O HOH A 360 1555 1555 2.18 LINK MG MG A 205 O HOH A 399 1555 1555 2.18 LINK MG MG A 205 O HOH A 400 1555 1555 2.18 LINK O HOH A 307 MG MG B 202 1555 1555 2.18 LINK O HOH A 316 MG MG B 203 1555 1555 2.18 LINK O HOH A 330 MG MG B 202 1555 1555 2.17 LINK O HOH A 332 MG MG B 202 1555 1555 2.18 LINK O HOH A 361 MG MG B 203 1555 1555 2.18 LINK OP1 A B 137 MG MG B 202 1555 1555 1.80 LINK OP2 A B 148 MG MG B 204 1555 1555 2.26 LINK MG MG B 201 O HOH B 345 1555 1555 2.18 LINK MG MG B 201 O HOH B 389 1555 1555 2.18 LINK MG MG B 201 O HOH C 351 1555 1555 2.18 LINK MG MG B 201 O HOH C 389 1555 1555 2.18 LINK MG MG B 201 O HOH C 401 1555 1555 2.18 LINK MG MG B 201 O HOH D 318 1555 1555 2.17 LINK MG MG B 202 O HOH B 323 1555 1555 2.18 LINK MG MG B 202 O HOH B 325 1555 1555 2.17 LINK MG MG B 203 O HOH B 321 1555 1555 2.17 LINK MG MG B 203 O HOH B 324 1555 1555 2.18 LINK MG MG B 203 O HOH B 376 1555 1555 2.18 LINK MG MG B 203 O HOH B 388 1555 1555 2.18 LINK MG MG B 204 O HOH B 330 1555 1555 2.18 LINK MG MG B 204 O HOH B 338 1555 1555 2.18 LINK MG MG B 204 O HOH B 343 1555 1555 2.18 LINK MG MG B 204 O HOH B 372 1555 1555 2.18 LINK MG MG B 204 O HOH B 394 1555 1555 2.18 LINK MG MG B 205 O HOH B 301 1555 1555 2.18 LINK MG MG B 205 O HOH B 339 1555 1555 2.18 LINK MG MG B 205 O HOH B 347 1555 1555 2.18 LINK MG MG B 205 O HOH B 355 1555 1555 2.18 LINK MG MG B 205 O HOH B 405 1555 1555 2.18 LINK MG MG B 205 O HOH B 406 1555 1555 2.18 LINK OP1 A C 137 MG MG C 201 1555 1555 1.83 LINK OP2 A C 148 MG MG C 203 1555 1555 2.27 LINK MG MG C 201 O HOH C 326 1555 1555 2.17 LINK MG MG C 201 O HOH C 328 1555 1555 2.18 LINK MG MG C 201 O HOH D 303 1555 1555 2.18 LINK MG MG C 201 O HOH D 326 1555 1555 2.18 LINK MG MG C 201 O HOH D 330 1555 1555 2.17 LINK MG MG C 202 O HOH C 302 1555 1555 2.17 LINK MG MG C 202 O HOH C 314 1555 1555 2.18 LINK MG MG C 202 O HOH C 361 1555 1555 2.18 LINK MG MG C 202 O HOH C 369 1555 1555 2.18 LINK MG MG C 202 O HOH C 398 1555 1555 2.18 LINK MG MG C 202 O HOH D 319 1555 1555 2.18 LINK MG MG C 203 O HOH C 333 1555 1555 2.18 LINK MG MG C 203 O HOH C 342 1555 1555 2.18 LINK MG MG C 203 O HOH C 346 1555 1555 2.18 LINK MG MG C 203 O HOH C 372 1555 1555 2.18 LINK MG MG C 203 O HOH C 391 1555 1555 2.18 LINK MG MG C 204 O HOH C 301 1555 1555 2.18 LINK MG MG C 204 O HOH C 331 1555 1555 2.18 LINK MG MG C 204 O HOH C 338 1555 1555 2.18 LINK MG MG C 204 O HOH C 359 1555 1555 2.18 LINK MG MG C 204 O HOH C 403 1555 1555 2.18 LINK MG MG C 204 O HOH C 404 1555 1555 2.18 LINK O HOH C 310 MG MG D 201 1555 1555 2.18 LINK O HOH C 320 MG MG D 202 1555 1555 2.18 LINK O HOH C 337 MG MG D 201 1555 1555 2.17 LINK O HOH C 341 MG MG D 201 1555 1555 2.17 LINK OP1 A D 137 MG MG D 201 1555 1555 1.82 LINK OP2 A D 148 MG MG D 203 1555 1555 2.25 LINK MG MG D 201 O HOH D 321 1555 1555 2.18 LINK MG MG D 201 O HOH D 323 1555 1555 2.17 LINK MG MG D 202 O HOH D 311 1555 1555 2.18 LINK MG MG D 202 O HOH D 322 1555 1555 2.18 LINK MG MG D 202 O HOH D 324 1555 1555 2.18 LINK MG MG D 202 O HOH D 347 1555 1555 2.18 LINK MG MG D 202 O HOH D 366 1555 1555 2.18 LINK MG MG D 203 O HOH D 336 1555 1555 2.18 LINK MG MG D 203 O HOH D 339 1555 1555 2.18 LINK MG MG D 203 O HOH D 345 1555 1555 2.18 LINK MG MG D 203 O HOH D 370 1555 1555 2.18 LINK MG MG D 203 O HOH D 388 1555 1555 2.18 LINK MG MG D 204 O HOH D 301 1555 1555 2.18 LINK MG MG D 204 O HOH D 335 1555 1555 2.18 LINK MG MG D 204 O HOH D 338 1555 1555 2.18 LINK MG MG D 204 O HOH D 343 1555 1555 2.18 LINK MG MG D 204 O HOH D 400 1555 1555 2.18 LINK MG MG D 204 O HOH D 401 1555 1555 2.18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 1360 7834 CONECT 1683 7836 CONECT 3318 7839 CONECT 3641 7841 CONECT 5276 7843 CONECT 5599 7845 CONECT 7234 7847 CONECT 7557 7849 CONECT 7833 7897 7936 8081 8217 CONECT 7833 8244 8258 CONECT 7834 1360 7870 7872 7959 CONECT 7834 7985 7986 CONECT 7835 7873 7874 7933 7968 CONECT 7835 8015 8018 CONECT 7836 1683 7878 7884 7886 CONECT 7836 7918 7938 CONECT 7837 7851 7887 7905 7910 CONECT 7837 7949 7950 CONECT 7838 7995 8039 8107 8145 CONECT 7838 8157 8178 CONECT 7839 3318 7857 7880 7882 CONECT 7839 7973 7975 CONECT 7840 7866 7911 7971 7974 CONECT 7840 8026 8038 CONECT 7841 3641 7980 7988 7993 CONECT 7841 8022 8044 CONECT 7842 7951 7989 7997 8005 CONECT 7842 8055 8056 CONECT 7843 5276 8082 8084 8163 CONECT 7843 8186 8190 CONECT 7844 8058 8070 8117 8125 CONECT 7844 8154 8179 CONECT 7845 5599 8089 8098 8102 CONECT 7845 8128 8147 CONECT 7846 8057 8087 8094 8115 CONECT 7846 8159 8160 CONECT 7847 7234 8066 8093 8097 CONECT 7847 8181 8183 CONECT 7848 8076 8171 8182 8184 CONECT 7848 8207 8226 CONECT 7849 7557 8196 8199 8205 CONECT 7849 8230 8248 CONECT 7850 8161 8195 8198 8203 CONECT 7850 8260 8261 CONECT 7851 7837 CONECT 7857 7839 CONECT 7866 7840 CONECT 7870 7834 CONECT 7872 7834 CONECT 7873 7835 CONECT 7874 7835 CONECT 7878 7836 CONECT 7880 7839 CONECT 7882 7839 CONECT 7884 7836 CONECT 7886 7836 CONECT 7887 7837 CONECT 7897 7833 CONECT 7905 7837 CONECT 7910 7837 CONECT 7911 7840 CONECT 7918 7836 CONECT 7933 7835 CONECT 7936 7833 CONECT 7938 7836 CONECT 7949 7837 CONECT 7950 7837 CONECT 7951 7842 CONECT 7959 7834 CONECT 7968 7835 CONECT 7971 7840 CONECT 7973 7839 CONECT 7974 7840 CONECT 7975 7839 CONECT 7980 7841 CONECT 7985 7834 CONECT 7986 7834 CONECT 7988 7841 CONECT 7989 7842 CONECT 7993 7841 CONECT 7995 7838 CONECT 7997 7842 CONECT 8005 7842 CONECT 8015 7835 CONECT 8018 7835 CONECT 8022 7841 CONECT 8026 7840 CONECT 8038 7840 CONECT 8039 7838 CONECT 8044 7841 CONECT 8055 7842 CONECT 8056 7842 CONECT 8057 7846 CONECT 8058 7844 CONECT 8066 7847 CONECT 8070 7844 CONECT 8076 7848 CONECT 8081 7833 CONECT 8082 7843 CONECT 8084 7843 CONECT 8087 7846 CONECT 8089 7845 CONECT 8093 7847 CONECT 8094 7846 CONECT 8097 7847 CONECT 8098 7845 CONECT 8102 7845 CONECT 8107 7838 CONECT 8115 7846 CONECT 8117 7844 CONECT 8125 7844 CONECT 8128 7845 CONECT 8145 7838 CONECT 8147 7845 CONECT 8154 7844 CONECT 8157 7838 CONECT 8159 7846 CONECT 8160 7846 CONECT 8161 7850 CONECT 8163 7843 CONECT 8171 7848 CONECT 8178 7838 CONECT 8179 7844 CONECT 8181 7847 CONECT 8182 7848 CONECT 8183 7847 CONECT 8184 7848 CONECT 8186 7843 CONECT 8190 7843 CONECT 8195 7850 CONECT 8196 7849 CONECT 8198 7850 CONECT 8199 7849 CONECT 8203 7850 CONECT 8205 7849 CONECT 8207 7848 CONECT 8217 7833 CONECT 8226 7848 CONECT 8230 7849 CONECT 8244 7833 CONECT 8248 7849 CONECT 8258 7833 CONECT 8260 7850 CONECT 8261 7850 MASTER 611 0 18 0 0 0 0 6 7909 4 144 52 END