HEADER FLAVOPROTEIN 28-FEB-25 9NK1 TITLE PRENYLATED-FMN MATURASE PHDC FROM MYCOLICIBACTERIUM FORTUITUM BOUND TO TITLE 2 FLAVIN MONONUCLEOTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDOXAMINE 5'-PHOSPHATE OXIDASE PUTATIVE DOMAIN- COMPND 3 CONTAINING PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM FORTUITUM; SOURCE 3 ORGANISM_TAXID: 1766; SOURCE 4 GENE: XA26_16660; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCDFDUET-1 KEYWDS FMN, MATURASE, HOMODIMER, BETA-SANDWHICH, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.R.KILDE,M.KOUTMOS REVDAT 1 18-FEB-26 9NK1 0 JRNL AUTH D.J.DIROCCO,I.KILDE,D.P.LANGFORD,P.ROY,S.BHAUMIK,J.MENDOZA, JRNL AUTH 2 M.KOUTMOS,E.N.G.MARSH JRNL TITL STRUCTURE AND MECHANISM OF THE PRENYLATED-FMN MATURASE, PHDC JRNL REF ACS CATALYSIS V. 16 1773 2026 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.5C08793 REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.88) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 83.9 REMARK 3 NUMBER OF REFLECTIONS : 44079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.932 REMARK 3 FREE R VALUE TEST SET COUNT : 2174 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1218 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 33.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1181 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.30200 REMARK 3 B22 (A**2) : 4.46000 REMARK 3 B33 (A**2) : -2.15800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.037 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.790 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.977 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1265 ; 0.017 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1182 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1722 ; 2.140 ; 1.845 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2715 ; 0.770 ; 1.770 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 155 ; 6.645 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 15 ;15.901 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 205 ;10.076 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 194 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1526 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 294 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 222 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 71 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 616 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 80 ; 0.190 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.068 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 617 ; 5.870 ; 1.642 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 617 ; 5.791 ; 1.640 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 773 ; 7.804 ; 2.950 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 774 ; 7.843 ; 2.958 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 648 ; 9.150 ; 2.071 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 641 ; 8.922 ; 2.061 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 949 ;12.855 ; 3.612 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 944 ;12.594 ; 3.589 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2447 ; 6.890 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9NK1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1000293312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 -CRYSTAL SI(111) MONOCHROMATOR REMARK 200 WITH A 0.01% ENERGY BANDPASS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44741 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.230 REMARK 200 RESOLUTION RANGE LOW (A) : 47.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.2 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 32.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:2 PROTEIN (20MM BISTRIS PH 7.2, REMARK 280 200MM KCL, 1MM MNCL2, 5% GLYCEROL +FMN RECONSTITUTION) TO REMARK 280 CONDITION (30% W/V PEG 5000 MME, 100 MM MES/ SODIUM HYDROXIDE PH REMARK 280 6.5, 200 MM AMMONIUM SULFATE), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.01950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.51600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.87300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.01950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.51600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.87300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.01950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.51600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.87300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.01950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.51600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 39.87300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 GLY A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 SER A -4 REMARK 465 GLN A -3 REMARK 465 ASP A -2 REMARK 465 PRO A -1 REMARK 465 MET A 0 REMARK 465 GLN A 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 308 O HOH A 386 2.10 REMARK 500 NH1 ARG A 69 O HOH A 301 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 7 CD GLU A 7 OE1 0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 7 CG - CD - OE2 ANGL. DEV. = -15.2 DEGREES REMARK 500 ARG A 13 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 70 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 90 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 112 NE - CZ - NH1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 145 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 98 -127.30 54.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 63 0.27 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 12 O REMARK 620 2 GLY A 14 O 96.2 REMARK 620 3 ARG A 43 O 120.9 85.8 REMARK 620 4 LEU A 46 O 88.4 166.4 80.9 REMARK 620 5 GLU A 47 OE1 97.0 94.6 141.9 97.5 REMARK 620 N 1 2 3 4 DBREF1 9NK1 A 0 153 UNP A0A0N9XAG5_MYCFO DBREF2 9NK1 A A0A0N9XAG5 2 155 SEQADV 9NK1 MET A -14 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK1 GLY A -13 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK1 SER A -12 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK1 SER A -11 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK1 HIS A -10 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK1 HIS A -9 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK1 HIS A -8 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK1 HIS A -7 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK1 HIS A -6 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK1 HIS A -5 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK1 SER A -4 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK1 GLN A -3 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK1 ASP A -2 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK1 PRO A -1 UNP A0A0N9XAG EXPRESSION TAG SEQRES 1 A 168 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 168 PRO MET MET SER LYS VAL PRO GLY GLU ILE ALA GLU LEU SEQRES 3 A 168 LEU ARG GLY PHE PRO ASP VAL ASP VAL GLN GLU GLN ALA SEQRES 4 A 168 PHE ALA PHE LEU THR VAL ASP THR GLY GLY TYR PRO HIS SEQRES 5 A 168 SER ALA LEU LEU SER ARG THR GLU LEU GLU PRO SER THR SEQRES 6 A 168 ASP GLU ALA VAL LEU PHE ALA VAL VAL ALA SER PRO ARG SEQRES 7 A 168 THR ARG ALA ASN LEU ARG ARG THR GLY THR ALA GLY LEU SEQRES 8 A 168 ILE ALA ILE ASP GLY THR THR CYS HIS HIS LEU LYS LEU SEQRES 9 A 168 ARG MET THR GLY SER LEU ALA ASP ARG GLY LEU LEU ALA SEQRES 10 A 168 CYS ILE PHE SER VAL VAL ASP HIS LYS ARG ASP ASP LEU SEQRES 11 A 168 GLY ILE PRO LEU GLN PRO MET LEU PHE ARG THR SER ALA SEQRES 12 A 168 ASP LEU ALA GLU GLN GLU ASP TRP PRO ARG THR ARG ASP SEQRES 13 A 168 LEU PHE GLU ARG LEU ARG ALA GLY TYR GLU GLN GLN HET EDO A 201 4 HET NA A 202 1 HET FMN A 203 31 HET SO4 A 204 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 EDO C2 H6 O2 FORMUL 3 NA NA 1+ FORMUL 4 FMN C17 H21 N4 O9 P FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *134(H2 O) HELIX 1 AA1 PRO A 5 ARG A 13 1 9 HELIX 2 AA2 SER A 42 THR A 44 5 3 HELIX 3 AA3 SER A 61 GLY A 72 1 12 HELIX 4 AA4 SER A 127 GLU A 134 1 8 HELIX 5 AA5 ASP A 135 GLN A 152 1 18 SHEET 1 AA1 2 GLN A 21 GLN A 23 0 SHEET 2 AA1 2 LEU A 123 ARG A 125 -1 O PHE A 124 N GLU A 22 SHEET 1 AA2 7 PRO A 36 LEU A 41 0 SHEET 2 AA2 7 PHE A 25 VAL A 30 -1 N PHE A 27 O ALA A 39 SHEET 3 AA2 7 THR A 73 ASP A 80 -1 O GLY A 75 N LEU A 28 SHEET 4 AA2 7 THR A 83 ASP A 97 -1 O HIS A 85 N ALA A 78 SHEET 5 AA2 7 LEU A 100 ASP A 114 -1 O ALA A 102 N LEU A 95 SHEET 6 AA2 7 LEU A 55 VAL A 59 -1 N ALA A 57 O CYS A 103 SHEET 7 AA2 7 LEU A 46 PRO A 48 -1 N GLU A 47 O PHE A 56 LINK O LEU A 12 NA NA A 202 1555 1555 2.36 LINK O GLY A 14 NA NA A 202 1555 1555 2.37 LINK O ARG A 43 NA NA A 202 1555 1555 2.37 LINK O LEU A 46 NA NA A 202 1555 1555 2.28 LINK OE1 GLU A 47 NA NA A 202 1555 1555 2.39 CRYST1 60.039 75.032 79.746 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016656 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013328 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012540 0.00000 CONECT 84 1206 CONECT 103 1206 CONECT 321 1206 CONECT 348 1206 CONECT 360 1206 CONECT 1202 1203 1204 CONECT 1203 1202 CONECT 1204 1202 1205 CONECT 1205 1204 CONECT 1206 84 103 321 348 CONECT 1206 360 CONECT 1207 1208 1224 CONECT 1208 1207 1209 1210 CONECT 1209 1208 CONECT 1210 1208 1211 CONECT 1211 1210 1212 1213 CONECT 1212 1211 CONECT 1213 1211 1214 1224 CONECT 1214 1213 1215 CONECT 1215 1214 1216 1222 CONECT 1216 1215 1217 CONECT 1217 1216 1218 1219 CONECT 1218 1217 CONECT 1219 1217 1220 1221 CONECT 1220 1219 CONECT 1221 1219 1222 CONECT 1222 1215 1221 1223 CONECT 1223 1222 1224 1225 CONECT 1224 1207 1213 1223 CONECT 1225 1223 1226 CONECT 1226 1225 1227 1228 CONECT 1227 1226 CONECT 1228 1226 1229 1230 CONECT 1229 1228 CONECT 1230 1228 1231 1232 CONECT 1231 1230 CONECT 1232 1230 1233 CONECT 1233 1232 1234 CONECT 1234 1233 1235 1236 1237 CONECT 1235 1234 CONECT 1236 1234 CONECT 1237 1234 CONECT 1238 1239 1240 1241 1242 CONECT 1239 1238 CONECT 1240 1238 CONECT 1241 1238 CONECT 1242 1238 MASTER 391 0 4 5 9 0 0 6 1356 1 47 13 END