HEADER FLAVOPROTEIN 28-FEB-25 9NK3 TITLE PRENYLATED-FMN MATURASE PHDC E45A MUTANT FROM MYCOLICIBACTERIUM TITLE 2 FORTUITUM (APO) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDOXAMINE 5'-PHOSPHATE OXIDASE PUTATIVE DOMAIN- COMPND 3 CONTAINING PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM FORTUITUM; SOURCE 3 ORGANISM_TAXID: 1766; SOURCE 4 GENE: XA26_16660; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCDFDUET-1 KEYWDS MATURASE, HOMODIMER, BETA-SANDWHICH, PRFMN, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.R.KILDE,M.KOUTMOS REVDAT 1 18-FEB-26 9NK3 0 JRNL AUTH D.J.DIROCCO,I.KILDE,D.P.LANGFORD,P.ROY,S.BHAUMIK,J.MENDOZA, JRNL AUTH 2 M.KOUTMOS,E.N.G.MARSH JRNL TITL STRUCTURE AND MECHANISM OF THE PRENYLATED-FMN MATURASE, PHDC JRNL REF ACS CATALYSIS V. 16 1773 2026 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.5C08793 REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.88) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 83.5 REMARK 3 NUMBER OF REFLECTIONS : 36263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.120 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.831 REMARK 3 FREE R VALUE TEST SET COUNT : 1752 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1514 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.1950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1183 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.06500 REMARK 3 B22 (A**2) : 2.44700 REMARK 3 B33 (A**2) : -0.38200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.043 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.475 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.977 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1262 ; 0.015 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1207 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1711 ; 2.137 ; 1.847 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2770 ; 0.750 ; 1.760 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 161 ; 6.305 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 16 ;20.114 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 206 ;11.318 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 195 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1534 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 300 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 203 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 91 ; 0.292 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 605 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 75 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.065 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 635 ; 6.190 ; 1.562 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 636 ; 6.189 ; 1.566 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 799 ; 8.513 ; 2.803 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 800 ; 8.542 ; 2.809 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 627 ;10.461 ; 2.025 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 628 ;10.455 ; 2.028 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 912 ;14.558 ; 3.504 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 913 ;14.550 ; 3.506 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2469 ; 5.354 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9NK3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1000293467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.729 REMARK 200 MONOCHROMATOR : AT 26 M, SI (111), DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR, REMARK 200 HORIZONTALLY DEFLECTING, LN2 REMARK 200 SIDE-COOLING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE CDTE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36263 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.320 REMARK 200 RESOLUTION RANGE LOW (A) : 55.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.9 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 50.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.44100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:1 CRYSTALLIZATION CONDITION (0.2M REMARK 280 AMMONIUM ACETATE, 0.1M HEPES/NAOH PH 7.5, 45% V/V MPD) TO BUFFER REMARK 280 (20 MM BISTRIS PH 7.2 200 MM KCL 1MM MNCL2)., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.90050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.80250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.44750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.90050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.80250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.44750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.90050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.80250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.44750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.90050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.80250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.44750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 GLY A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 SER A -4 REMARK 465 GLN A -3 REMARK 465 ASP A -2 REMARK 465 GLN A 153 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A -1 CG CD REMARK 470 MET A 1 CG SD CE REMARK 470 GLN A 152 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 144 O HOH A 301 2.01 REMARK 500 O HOH A 323 O HOH A 434 2.17 REMARK 500 O HOH A 417 O HOH A 427 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HD2 ARG A 112 OE2 GLU A 144 8544 1.25 REMARK 500 CD ARG A 112 OE2 GLU A 144 8544 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 13 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 63 CG - CD - NE ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 69 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 70 NH1 - CZ - NH2 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 70 NE - CZ - NH2 ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG A 90 NH1 - CZ - NH2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 90 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP A 113 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 98 -124.48 57.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 63 0.15 SIDE CHAIN REMARK 500 ARG A 69 0.17 SIDE CHAIN REMARK 500 ARG A 90 0.15 SIDE CHAIN REMARK 500 ARG A 98 0.12 SIDE CHAIN REMARK 500 ARG A 112 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 12 O REMARK 620 2 GLY A 14 O 95.7 REMARK 620 3 ARG A 43 O 122.1 86.3 REMARK 620 4 LEU A 46 O 88.9 166.9 80.9 REMARK 620 5 GLU A 47 OE1 98.4 94.3 139.3 97.3 REMARK 620 N 1 2 3 4 DBREF1 9NK3 A 0 153 UNP A0A0N9XAG5_MYCFO DBREF2 9NK3 A A0A0N9XAG5 2 155 SEQADV 9NK3 MET A -14 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK3 GLY A -13 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK3 SER A -12 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK3 SER A -11 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK3 HIS A -10 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK3 HIS A -9 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK3 HIS A -8 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK3 HIS A -7 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK3 HIS A -6 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK3 HIS A -5 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK3 SER A -4 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK3 GLN A -3 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK3 ASP A -2 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK3 PRO A -1 UNP A0A0N9XAG EXPRESSION TAG SEQADV 9NK3 ALA A 45 UNP A0A0N9XAG GLU 47 ENGINEERED MUTATION SEQRES 1 A 168 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 168 PRO MET MET SER LYS VAL PRO GLY GLU ILE ALA GLU LEU SEQRES 3 A 168 LEU ARG GLY PHE PRO ASP VAL ASP VAL GLN GLU GLN ALA SEQRES 4 A 168 PHE ALA PHE LEU THR VAL ASP THR GLY GLY TYR PRO HIS SEQRES 5 A 168 SER ALA LEU LEU SER ARG THR ALA LEU GLU PRO SER THR SEQRES 6 A 168 ASP GLU ALA VAL LEU PHE ALA VAL VAL ALA SER PRO ARG SEQRES 7 A 168 THR ARG ALA ASN LEU ARG ARG THR GLY THR ALA GLY LEU SEQRES 8 A 168 ILE ALA ILE ASP GLY THR THR CYS HIS HIS LEU LYS LEU SEQRES 9 A 168 ARG MET THR GLY SER LEU ALA ASP ARG GLY LEU LEU ALA SEQRES 10 A 168 CYS ILE PHE SER VAL VAL ASP HIS LYS ARG ASP ASP LEU SEQRES 11 A 168 GLY ILE PRO LEU GLN PRO MET LEU PHE ARG THR SER ALA SEQRES 12 A 168 ASP LEU ALA GLU GLN GLU ASP TRP PRO ARG THR ARG ASP SEQRES 13 A 168 LEU PHE GLU ARG LEU ARG ALA GLY TYR GLU GLN GLN HET NA A 201 1 HET EDO A 202 8 HET MRD A 203 20 HET EDO A 204 8 HET EDO A 205 8 HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NA NA 1+ FORMUL 3 EDO 3(C2 H6 O2) FORMUL 4 MRD C6 H14 O2 FORMUL 7 HOH *138(H2 O) HELIX 1 AA1 PRO A 5 ARG A 13 1 9 HELIX 2 AA2 SER A 61 GLY A 72 1 12 HELIX 3 AA3 SER A 127 GLU A 134 1 8 HELIX 4 AA4 ASP A 135 GLN A 152 1 18 SHEET 1 AA1 2 GLN A 21 GLN A 23 0 SHEET 2 AA1 2 LEU A 123 ARG A 125 -1 O PHE A 124 N GLU A 22 SHEET 1 AA2 7 PRO A 36 LEU A 41 0 SHEET 2 AA2 7 PHE A 25 VAL A 30 -1 N PHE A 27 O ALA A 39 SHEET 3 AA2 7 THR A 73 ASP A 80 -1 O GLY A 75 N LEU A 28 SHEET 4 AA2 7 THR A 83 ASP A 97 -1 O HIS A 85 N ALA A 78 SHEET 5 AA2 7 LEU A 100 ASP A 113 -1 O ALA A 102 N LEU A 95 SHEET 6 AA2 7 LEU A 55 VAL A 59 -1 N ALA A 57 O CYS A 103 SHEET 7 AA2 7 LEU A 46 PRO A 48 -1 N GLU A 47 O PHE A 56 LINK O LEU A 12 NA NA A 201 1555 1555 2.34 LINK O GLY A 14 NA NA A 201 1555 1555 2.38 LINK O ARG A 43 NA NA A 201 1555 1555 2.37 LINK O LEU A 46 NA NA A 201 1555 1555 2.32 LINK OE1 GLU A 47 NA NA A 201 1555 1555 2.35 CRYST1 59.801 75.605 80.895 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016722 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012362 0.00000 CONECT 192 2405 CONECT 235 2405 CONECT 646 2405 CONECT 693 2405 CONECT 716 2405 CONECT 2405 192 235 646 693 CONECT 2405 716 CONECT 2406 2407 2408 2410 2411 CONECT 2407 2406 CONECT 2408 2406 2409 2412 2413 CONECT 2409 2408 CONECT 2410 2406 CONECT 2411 2406 CONECT 2412 2408 CONECT 2413 2408 CONECT 2414 2415 2422 2423 2424 CONECT 2415 2414 2416 2417 2418 CONECT 2416 2415 CONECT 2417 2415 2425 2426 2427 CONECT 2418 2415 2419 2428 2429 CONECT 2419 2418 2420 2421 2430 CONECT 2420 2419 CONECT 2421 2419 2431 2432 2433 CONECT 2422 2414 CONECT 2423 2414 CONECT 2424 2414 CONECT 2425 2417 CONECT 2426 2417 CONECT 2427 2417 CONECT 2428 2418 CONECT 2429 2418 CONECT 2430 2419 CONECT 2431 2421 CONECT 2432 2421 CONECT 2433 2421 CONECT 2434 2435 2436 2438 2439 CONECT 2435 2434 CONECT 2436 2434 2437 2440 2441 CONECT 2437 2436 CONECT 2438 2434 CONECT 2439 2434 CONECT 2440 2436 CONECT 2441 2436 CONECT 2442 2443 2444 2446 2447 CONECT 2443 2442 CONECT 2444 2442 2445 2448 2449 CONECT 2445 2444 CONECT 2446 2442 CONECT 2447 2442 CONECT 2448 2444 CONECT 2449 2444 MASTER 406 0 5 4 9 0 0 6 1342 1 51 13 END