HEADER TRANSFERASE/DNA 28-FEB-25 9NKC TITLE DPO4 DNA POLYMERASE (WILD TYPE) IN COMPLEX WITH DNA CONTAINING AN TITLE 2 8OXOG TEMPLATE LESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: EXTENDED PRIMER STRAND; COMPND 9 CHAIN: P; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: TEMPLATE DNA; COMPND 13 CHAIN: T; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROLOBUS SOLFATARICUS P2; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 GENE: DBH, DPO4, SSO2448; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS DNA POLYMERASE TRANSLESION SYNTHESIS 8OXOG DAMAGE, TRANSFERASE, KEYWDS 2 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.PATA,B.LIANG REVDAT 2 08-OCT-25 9NKC 1 JRNL REVDAT 1 24-SEP-25 9NKC 0 JRNL AUTH S.S.DISHA,T.I.PUNCHIPATABENDI,J.D.KASZUBOWSKI,B.LIANG, JRNL AUTH 2 J.D.PATA,M.A.TRAKSELIS JRNL TITL RESIDUES IN THE LITTLE FINGER DOMAIN OF THE Y-FAMILY DPO4 JRNL TITL 2 DNA POLYMERASE COMMUNICATE TO RESTRICT SYNTHESIS PAST JRNL TITL 3 8-OXOGUANINE LESIONS. JRNL REF NUCLEIC ACIDS RES. V. 53 2025 JRNL REFN ESSN 1362-4962 JRNL PMID 41002026 JRNL DOI 10.1093/NAR/GKAF950 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 18586 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.6400 - 5.8600 0.99 1378 159 0.1619 0.2104 REMARK 3 2 5.8600 - 4.6600 1.00 1335 146 0.1578 0.2038 REMARK 3 3 4.6600 - 4.0800 1.00 1312 141 0.1417 0.1997 REMARK 3 4 4.0800 - 3.7000 0.98 1270 145 0.1663 0.2555 REMARK 3 5 3.7000 - 3.4400 0.98 1285 139 0.1869 0.2744 REMARK 3 6 3.4400 - 3.2400 0.99 1267 144 0.1965 0.2749 REMARK 3 7 3.2400 - 3.0800 1.00 1283 142 0.2185 0.2888 REMARK 3 8 3.0800 - 2.9400 1.00 1289 140 0.2354 0.3426 REMARK 3 9 2.9400 - 2.8300 1.00 1273 145 0.2429 0.3347 REMARK 3 10 2.8300 - 2.7300 1.00 1270 138 0.2439 0.3158 REMARK 3 11 2.7300 - 2.6500 1.00 1270 139 0.2507 0.3402 REMARK 3 12 2.6500 - 2.5700 1.00 1268 143 0.2441 0.3747 REMARK 3 13 2.5700 - 2.5000 0.96 1228 137 0.2465 0.3074 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.317 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.089 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 3503 REMARK 3 ANGLE : 1.462 4846 REMARK 3 CHIRALITY : 0.066 549 REMARK 3 PLANARITY : 0.013 503 REMARK 3 DIHEDRAL : 22.961 1388 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9NKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1000292816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7-7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 V722 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 V722 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18593 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.69600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.20.1_4487 REMARK 200 STARTING MODEL: 3QZ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CALCIUM ACETATE, HEPES, PEG-3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.39400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.88750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.39400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.88750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 342 REMARK 465 ALA A 343 REMARK 465 ILE A 344 REMARK 465 GLY A 345 REMARK 465 LEU A 346 REMARK 465 ASP A 347 REMARK 465 LYS A 348 REMARK 465 PHE A 349 REMARK 465 PHE A 350 REMARK 465 ASP A 351 REMARK 465 THR A 352 REMARK 465 DC T -3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 336 OP2 DC T 3 1.54 REMARK 500 HE ARG A 87 OE2 GLU A 136 1.60 REMARK 500 OE1 GLU A 170 NH1 ARG A 173 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT P 7 O3' DT P 7 C3' -0.038 REMARK 500 DT T 0 C2 DT T 0 O2 0.055 REMARK 500 DC T 3 O3' DC T 3 C3' -0.048 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA P 8 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 59.75 23.17 REMARK 500 ASN A 20 71.10 -155.38 REMARK 500 SER A 34 -79.76 -112.28 REMARK 500 ARG A 36 -74.47 -86.22 REMARK 500 ARG A 77 72.10 -115.04 REMARK 500 SER A 145 -161.87 -167.59 REMARK 500 ASN A 161 53.12 38.25 REMARK 500 LEU A 197 12.99 84.03 REMARK 500 THR A 205 -8.20 -59.27 REMARK 500 ASP A 277 -117.75 50.62 REMARK 500 LEU A 293 8.75 89.47 REMARK 500 LYS A 339 60.26 62.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 ASP A 7 OD2 46.4 REMARK 620 3 PHE A 8 O 101.3 79.4 REMARK 620 4 ASP A 105 OD2 68.0 111.4 98.4 REMARK 620 5 DTP P 102 O2G 118.0 80.3 95.8 163.0 REMARK 620 6 DTP P 102 O2B 76.1 99.1 177.2 79.9 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 ASP A 105 OD1 94.4 REMARK 620 3 ASP A 105 OD2 74.2 52.7 REMARK 620 4 GLU A 106 OE2 86.9 100.4 144.3 REMARK 620 5 DA P 14 OP2 167.4 85.9 115.2 80.7 REMARK 620 6 DTP P 102 O2B 89.1 122.9 74.1 136.7 101.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA P 14 OP1 REMARK 620 2 DTP P 102 O1B 76.4 REMARK 620 3 DTP P 102 O1A 86.0 76.7 REMARK 620 4 HOH P 212 O 168.3 95.5 83.9 REMARK 620 N 1 2 3 DBREF 9NKC A 1 352 UNP Q97W02 DPO4_SACS2 1 352 DBREF 9NKC P 1 14 PDB 9NKC 9NKC 1 14 DBREF 9NKC T -3 13 PDB 9NKC 9NKC -3 13 SEQRES 1 A 352 MET ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 352 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 352 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 352 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 352 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 352 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 352 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 352 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 352 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 352 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 352 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 352 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 352 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 352 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 352 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 352 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 352 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 352 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 352 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 352 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 352 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 352 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 352 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 352 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 352 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 352 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 A 352 LYS PHE ILE GLU ALA ILE GLY LEU ASP LYS PHE PHE ASP SEQRES 28 A 352 THR SEQRES 1 P 14 DG DA DG DC DG DA DT DA DC DC DG DT DG SEQRES 2 P 14 DA SEQRES 1 T 17 DC DG DA DT DC DA DC 8OG DG DT DA DT DC SEQRES 2 T 17 DG DC DT DC HET 8OG T 4 34 HET CA A 401 1 HET CA A 402 1 HET CA P 101 1 HET DTP P 102 42 HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM CA CALCIUM ION HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE FORMUL 3 8OG C10 H14 N5 O8 P FORMUL 4 CA 3(CA 2+) FORMUL 7 DTP C10 H16 N5 O12 P3 FORMUL 8 HOH *68(H2 O) HELIX 1 AA1 TYR A 10 ASN A 20 1 11 HELIX 2 AA2 PRO A 21 LYS A 24 5 4 HELIX 3 AA3 ASN A 47 LYS A 52 1 6 HELIX 4 AA4 PRO A 60 LEU A 68 1 9 HELIX 5 AA5 ARG A 77 GLU A 94 1 18 HELIX 6 AA6 SER A 112 VAL A 115 5 4 HELIX 7 AA7 ASP A 117 LYS A 137 1 21 HELIX 8 AA8 ASN A 147 LYS A 159 1 13 HELIX 9 AA9 ASP A 167 LEU A 178 1 12 HELIX 10 AB1 ASP A 179 VAL A 183 5 5 HELIX 11 AB2 GLY A 187 LEU A 194 1 8 HELIX 12 AB3 VAL A 203 ILE A 208 1 6 HELIX 13 AB4 GLU A 209 GLY A 218 1 10 HELIX 14 AB5 GLY A 218 ARG A 230 1 13 HELIX 15 AB6 ASN A 257 ASP A 277 1 21 HELIX 16 AB7 SER A 307 ASP A 326 1 20 SHEET 1 AA1 5 ILE A 99 SER A 103 0 SHEET 2 AA1 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 AA1 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 AA1 5 VAL A 140 SER A 145 -1 O GLY A 143 N PHE A 5 SHEET 5 AA1 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 AA2 3 GLY A 41 ALA A 46 0 SHEET 2 AA2 3 VAL A 28 PHE A 33 -1 N VAL A 30 O ALA A 44 SHEET 3 AA2 3 VAL A 72 PRO A 75 1 O LEU A 74 N CYS A 31 SHEET 1 AA3 4 SER A 244 SER A 255 0 SHEET 2 AA3 4 ILE A 330 PHE A 340 -1 O PHE A 337 N ILE A 245 SHEET 3 AA3 4 PRO A 281 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 AA3 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 LINK O3' DC T 3 P 8OG T 4 1555 1555 1.59 LINK O3' 8OG T 4 P DG T 5 1555 1555 1.60 LINK OD1 ASP A 7 CA CA A 401 1555 1555 2.94 LINK OD2 ASP A 7 CA CA A 401 1555 1555 2.30 LINK OD1 ASP A 7 CA CA A 402 1555 1555 2.35 LINK O PHE A 8 CA CA A 401 1555 1555 2.34 LINK OD2 ASP A 105 CA CA A 401 1555 1555 2.22 LINK OD1 ASP A 105 CA CA A 402 1555 1555 2.56 LINK OD2 ASP A 105 CA CA A 402 1555 1555 2.53 LINK OE2 GLU A 106 CA CA A 402 1555 1555 2.05 LINK CA CA A 401 O2G DTP P 102 1555 1555 2.20 LINK CA CA A 401 O2B DTP P 102 1555 1555 2.34 LINK CA CA A 402 OP2 DA P 14 1555 1555 2.42 LINK CA CA A 402 O2B DTP P 102 1555 1555 2.33 LINK OP1 DA P 14 CA CA P 101 1555 1555 2.26 LINK CA CA P 101 O1B DTP P 102 1555 1555 2.53 LINK CA CA P 101 O1A DTP P 102 1555 1555 2.18 LINK CA CA P 101 O HOH P 212 1555 1555 2.48 CISPEP 1 LYS A 159 PRO A 160 0 -5.22 CRYST1 98.788 101.775 52.094 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010123 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019196 0.00000 CONECT 116 6590 6591 CONECT 117 6590 CONECT 125 6590 CONECT 1686 6591 CONECT 1687 6590 6591 CONECT 1700 6591 CONECT 6048 6592 CONECT 6049 6591 CONECT 6248 6270 CONECT 6270 6248 6271 6272 6273 CONECT 6271 6270 CONECT 6272 6270 CONECT 6273 6270 6274 CONECT 6274 6273 6275 6293 6294 CONECT 6275 6274 6276 6277 6295 CONECT 6276 6275 6280 CONECT 6277 6275 6278 6279 6296 CONECT 6278 6277 6304 CONECT 6279 6277 6280 6297 6298 CONECT 6280 6276 6279 6281 6299 CONECT 6281 6280 6282 6291 CONECT 6282 6281 6283 6292 CONECT 6283 6282 6284 6300 CONECT 6284 6283 6285 6291 CONECT 6285 6284 6286 6287 CONECT 6286 6285 CONECT 6287 6285 6288 6301 CONECT 6288 6287 6289 6290 CONECT 6289 6288 6302 6303 CONECT 6290 6288 6291 CONECT 6291 6281 6284 6290 CONECT 6292 6282 CONECT 6293 6274 CONECT 6294 6274 CONECT 6295 6275 CONECT 6296 6277 CONECT 6297 6279 CONECT 6298 6279 CONECT 6299 6280 CONECT 6300 6283 CONECT 6301 6287 CONECT 6302 6289 CONECT 6303 6289 CONECT 6304 6278 CONECT 6590 116 117 125 1687 CONECT 6590 6595 6599 CONECT 6591 116 1686 1687 1700 CONECT 6591 6049 6599 CONECT 6592 6048 6598 6602 6689 CONECT 6593 6594 6595 6596 6600 CONECT 6594 6593 CONECT 6595 6590 6593 CONECT 6596 6593 CONECT 6597 6598 6599 6600 6604 CONECT 6598 6592 6597 CONECT 6599 6590 6591 6597 CONECT 6600 6593 6597 CONECT 6601 6602 6603 6604 6605 CONECT 6602 6592 6601 CONECT 6603 6601 CONECT 6604 6597 6601 CONECT 6605 6601 6606 CONECT 6606 6605 6607 6623 6624 CONECT 6607 6606 6608 6609 6625 CONECT 6608 6607 6612 CONECT 6609 6607 6610 6611 6626 CONECT 6610 6609 6627 CONECT 6611 6609 6612 6628 6629 CONECT 6612 6608 6611 6613 6630 CONECT 6613 6612 6614 6622 CONECT 6614 6613 6615 6631 CONECT 6615 6614 6616 CONECT 6616 6615 6617 6622 CONECT 6617 6616 6618 6619 CONECT 6618 6617 6632 6633 CONECT 6619 6617 6620 CONECT 6620 6619 6621 6634 CONECT 6621 6620 6622 CONECT 6622 6613 6616 6621 CONECT 6623 6606 CONECT 6624 6606 CONECT 6625 6607 CONECT 6626 6609 CONECT 6627 6610 CONECT 6628 6611 CONECT 6629 6611 CONECT 6630 6612 CONECT 6631 6614 CONECT 6632 6618 CONECT 6633 6618 CONECT 6634 6620 CONECT 6689 6592 MASTER 339 0 5 16 12 0 0 6 3459 3 92 32 END