HEADER TRANSFERASE/DNA 28-FEB-25 9NKD TITLE DPO4 DNA POLYMERASE (R332A) IN COMPLEX WITH DNA CONTAINING AN 8OXOG TITLE 2 TEMPLATE LESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PRIMER DNA; COMPND 10 CHAIN: P; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: TEMPLATE DNA; COMPND 14 CHAIN: T; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 GENE: DBH, DPO4, SSO2448; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS DNA POLYMERASE TRANSLESION SYNTHESIS 8OXOG DAMAGE, TRANSFERASE, KEYWDS 2 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.PATA,B.LIANG REVDAT 2 08-OCT-25 9NKD 1 JRNL REVDAT 1 24-SEP-25 9NKD 0 JRNL AUTH S.S.DISHA,T.I.PUNCHIPATABENDI,J.D.KASZUBOWSKI,B.LIANG, JRNL AUTH 2 J.D.PATA,M.A.TRAKSELIS JRNL TITL RESIDUES IN THE LITTLE FINGER DOMAIN OF THE Y-FAMILY DPO4 JRNL TITL 2 DNA POLYMERASE COMMUNICATE TO RESTRICT SYNTHESIS PAST JRNL TITL 3 8-OXOGUANINE LESIONS. JRNL REF NUCLEIC ACIDS RES. V. 53 2025 JRNL REFN ESSN 1362-4962 JRNL PMID 41002026 JRNL DOI 10.1093/NAR/GKAF950 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 18696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.7400 - 5.8600 0.98 1386 151 0.1840 0.2454 REMARK 3 2 5.8500 - 4.6600 1.00 1344 149 0.1908 0.2170 REMARK 3 3 4.6600 - 4.0700 1.00 1314 149 0.1631 0.2583 REMARK 3 4 4.0700 - 3.7000 0.97 1261 144 0.2094 0.2625 REMARK 3 5 3.7000 - 3.4400 0.98 1303 136 0.2111 0.3074 REMARK 3 6 3.4400 - 3.2300 0.99 1291 134 0.2336 0.2956 REMARK 3 7 3.2300 - 3.0700 1.00 1300 146 0.2319 0.2967 REMARK 3 8 3.0700 - 2.9400 1.00 1280 141 0.2597 0.3899 REMARK 3 9 2.9400 - 2.8300 0.99 1294 141 0.2747 0.3425 REMARK 3 10 2.8300 - 2.7300 0.99 1267 146 0.2716 0.3607 REMARK 3 11 2.7300 - 2.6400 0.99 1280 140 0.2744 0.3672 REMARK 3 12 2.6400 - 2.5700 0.99 1251 141 0.2827 0.3541 REMARK 3 13 2.5700 - 2.5000 0.99 1271 136 0.2918 0.3676 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.446 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3457 REMARK 3 ANGLE : 1.446 4775 REMARK 3 CHIRALITY : 0.067 542 REMARK 3 PLANARITY : 0.011 502 REMARK 3 DIHEDRAL : 22.198 1369 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9NKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1000292815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7-7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 V722 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 V722 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18784 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.61500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.20.1_4487 REMARK 200 STARTING MODEL: 3QZ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CALCIUM ACETATE, HEPES, PEG-3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.49000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.22250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.49000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.22250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 342 REMARK 465 ALA A 343 REMARK 465 ILE A 344 REMARK 465 GLY A 345 REMARK 465 LEU A 346 REMARK 465 ASP A 347 REMARK 465 LYS A 348 REMARK 465 PHE A 349 REMARK 465 PHE A 350 REMARK 465 ASP A 351 REMARK 465 THR A 352 REMARK 465 DC T -2 REMARK 465 DG T -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N3 DC P 10 H1 8OG T 5 1.50 REMARK 500 H22 DG P 13 O2 DC T 2 1.54 REMARK 500 O LEU A 194 H LEU A 197 1.56 REMARK 500 HH22 ARG A 36 OD1 ASN A 254 1.57 REMARK 500 O ALA A 268 HG SER A 272 1.59 REMARK 500 OG1 THR A 190 OP1 DG P 11 1.85 REMARK 500 OE2 GLU A 270 OH TYR A 312 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT T 1 C1' DT T 1 N1 0.084 REMARK 500 DA T 3 O3' DA T 3 C3' -0.065 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA P 2 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG P 5 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT T 1 N3 - C4 - O4 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC T 4 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT T 7 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC T 12 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 44.26 32.41 REMARK 500 ARG A 77 73.56 -116.01 REMARK 500 SER A 96 135.36 -172.35 REMARK 500 SER A 145 -169.61 -171.69 REMARK 500 ASN A 161 67.59 36.69 REMARK 500 ASN A 200 -32.01 -131.62 REMARK 500 ILE A 245 114.09 -160.82 REMARK 500 ASN A 254 164.04 -48.17 REMARK 500 ASP A 277 -134.21 44.33 REMARK 500 GLU A 325 7.34 -64.48 REMARK 500 LYS A 339 67.40 60.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DTP A 401 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 PHE A 8 O 91.1 REMARK 620 3 ASP A 105 OD1 74.3 63.8 REMARK 620 4 ASP A 105 OD2 76.2 110.7 47.1 REMARK 620 5 DTP A 401 O1B 178.2 90.2 107.5 104.6 REMARK 620 6 DTP A 401 O1A 102.5 166.0 116.6 70.2 76.3 REMARK 620 N 1 2 3 4 5 DBREF 9NKD A 1 352 UNP Q97W02 DPO4_SACS2 1 352 DBREF 9NKD P 1 13 PDB 9NKD 9NKD 1 13 DBREF 9NKD T -2 14 PDB 9NKD 9NKD -2 14 SEQADV 9NKD ALA A 332 UNP Q97W02 ARG 332 ENGINEERED MUTATION SEQRES 1 A 352 MET ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 352 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 352 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 352 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 352 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 352 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 352 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 352 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 352 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 352 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 352 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 352 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 352 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 352 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 352 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 352 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 352 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 352 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 352 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 352 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 352 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 352 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 352 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 352 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 352 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 352 ASP GLU ARG LYS ILE ARG ALA ILE GLY VAL ARG PHE SER SEQRES 27 A 352 LYS PHE ILE GLU ALA ILE GLY LEU ASP LYS PHE PHE ASP SEQRES 28 A 352 THR SEQRES 1 P 13 DG DA DG DC DG DA DT DA DC DC DG DT DG SEQRES 1 T 17 DC DG DA DT DC DA DC 8OG DG DT DA DT DC SEQRES 2 T 17 DG DC DT DC HET 8OG T 5 34 HET DTP A 401 38 HET CA A 402 1 HET PO4 A 403 5 HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE HETNAM CA CALCIUM ION HETNAM PO4 PHOSPHATE ION HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE FORMUL 3 8OG C10 H14 N5 O8 P FORMUL 4 DTP C10 H16 N5 O12 P3 FORMUL 5 CA CA 2+ FORMUL 6 PO4 O4 P 3- FORMUL 7 HOH *19(H2 O) HELIX 1 AA1 TYR A 10 ASN A 20 1 11 HELIX 2 AA2 PRO A 21 LYS A 24 5 4 HELIX 3 AA3 ASN A 47 LYS A 52 1 6 HELIX 4 AA4 PRO A 60 LEU A 68 1 9 HELIX 5 AA5 ARG A 77 ARG A 93 1 17 HELIX 6 AA6 SER A 112 VAL A 115 5 4 HELIX 7 AA7 ASP A 117 LYS A 137 1 21 HELIX 8 AA8 ASN A 147 LYS A 159 1 13 HELIX 9 AA9 ASP A 167 LEU A 178 1 12 HELIX 10 AB1 ASP A 179 VAL A 183 5 5 HELIX 11 AB2 GLY A 187 LYS A 196 1 10 HELIX 12 AB3 LYS A 201 SER A 207 5 7 HELIX 13 AB4 GLU A 209 GLY A 218 1 10 HELIX 14 AB5 GLY A 218 ARG A 230 1 13 HELIX 15 AB6 ASN A 257 LYS A 275 1 19 HELIX 16 AB7 SER A 307 GLU A 325 1 19 SHEET 1 AA1 5 ILE A 99 SER A 103 0 SHEET 2 AA1 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 AA1 5 VAL A 3 PHE A 8 -1 N VAL A 6 O ALA A 107 SHEET 4 AA1 5 VAL A 140 SER A 145 -1 O SER A 145 N VAL A 3 SHEET 5 AA1 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 AA2 3 GLY A 41 ALA A 46 0 SHEET 2 AA2 3 VAL A 28 PHE A 33 -1 N VAL A 30 O THR A 45 SHEET 3 AA2 3 VAL A 72 PRO A 75 1 O LEU A 74 N CYS A 31 SHEET 1 AA3 4 SER A 244 SER A 255 0 SHEET 2 AA3 4 ILE A 330 PHE A 340 -1 O ILE A 330 N SER A 255 SHEET 3 AA3 4 PRO A 281 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 AA3 4 ILE A 295 THR A 301 -1 O ARG A 298 N VAL A 286 LINK O3' DC T 4 P 8OG T 5 1555 1555 1.58 LINK O3' 8OG T 5 P DG T 6 1555 1555 1.62 LINK OD1 ASP A 7 CA CA A 402 1555 1555 2.33 LINK O PHE A 8 CA CA A 402 1555 1555 2.25 LINK OD1 ASP A 105 CA CA A 402 1555 1555 2.83 LINK OD2 ASP A 105 CA CA A 402 1555 1555 2.71 LINK O1B DTP A 401 CA CA A 402 1555 1555 2.39 LINK O1A DTP A 401 CA CA A 402 1555 1555 2.45 CISPEP 1 LYS A 159 PRO A 160 0 1.13 CRYST1 98.980 102.445 51.966 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010103 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009761 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019243 0.00000 CONECT 116 6568 CONECT 125 6568 CONECT 1686 6568 CONECT 1687 6568 CONECT 6188 6210 CONECT 6210 6188 6211 6212 6213 CONECT 6211 6210 CONECT 6212 6210 CONECT 6213 6210 6214 CONECT 6214 6213 6215 6233 6234 CONECT 6215 6214 6216 6217 6235 CONECT 6216 6215 6220 CONECT 6217 6215 6218 6219 6236 CONECT 6218 6217 6244 CONECT 6219 6217 6220 6237 6238 CONECT 6220 6216 6219 6221 6239 CONECT 6221 6220 6222 6231 CONECT 6222 6221 6223 6232 CONECT 6223 6222 6224 6240 CONECT 6224 6223 6225 6231 CONECT 6225 6224 6226 6227 CONECT 6226 6225 CONECT 6227 6225 6228 6241 CONECT 6228 6227 6229 6230 CONECT 6229 6228 6242 6243 CONECT 6230 6228 6231 CONECT 6231 6221 6224 6230 CONECT 6232 6222 CONECT 6233 6214 CONECT 6234 6214 CONECT 6235 6215 CONECT 6236 6217 CONECT 6237 6219 CONECT 6238 6219 CONECT 6239 6220 CONECT 6240 6223 CONECT 6241 6227 CONECT 6242 6229 CONECT 6243 6229 CONECT 6244 6218 CONECT 6530 6531 6532 6533 6537 CONECT 6531 6530 6568 CONECT 6532 6530 CONECT 6533 6530 CONECT 6534 6535 6536 6537 6538 CONECT 6535 6534 6568 CONECT 6536 6534 CONECT 6537 6530 6534 CONECT 6538 6534 6539 CONECT 6539 6538 6540 6556 6557 CONECT 6540 6539 6541 6542 6558 CONECT 6541 6540 6545 CONECT 6542 6540 6543 6544 6559 CONECT 6543 6542 6560 CONECT 6544 6542 6545 6561 6562 CONECT 6545 6541 6544 6546 6563 CONECT 6546 6545 6547 6555 CONECT 6547 6546 6548 6564 CONECT 6548 6547 6549 CONECT 6549 6548 6550 6555 CONECT 6550 6549 6551 6552 CONECT 6551 6550 6565 6566 CONECT 6552 6550 6553 CONECT 6553 6552 6554 6567 CONECT 6554 6553 6555 CONECT 6555 6546 6549 6554 CONECT 6556 6539 CONECT 6557 6539 CONECT 6558 6540 CONECT 6559 6542 CONECT 6560 6543 CONECT 6561 6544 CONECT 6562 6544 CONECT 6563 6545 CONECT 6564 6547 CONECT 6565 6551 CONECT 6566 6551 CONECT 6567 6553 CONECT 6568 116 125 1686 1687 CONECT 6568 6531 6535 CONECT 6569 6570 6571 6572 6573 CONECT 6570 6569 CONECT 6571 6569 CONECT 6572 6569 CONECT 6573 6569 MASTER 334 0 4 16 12 0 0 6 3360 3 85 31 END