data_9NO9 # _entry.id 9NO9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.411 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9NO9 pdb_00009no9 10.2210/pdb9no9/pdb WWPDB D_1000293873 ? ? EMDB EMD-49596 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-03-25 ? 2 'EM metadata' 1 0 2026-03-25 ? 3 FSC 1 0 2026-03-25 ? 4 'Half map' 1 0 2026-03-25 1 5 'Half map' 1 0 2026-03-25 2 6 Image 1 0 2026-03-25 ? 7 'Primary map' 1 0 2026-03-25 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9NO9 _pdbx_database_status.recvd_initial_deposition_date 2025-03-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'CryoEM structure of computationally designed bundlemer peptide nanotube (15 protofilament)' _pdbx_database_related.db_id EMD-49596 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email vcontic@emory.edu _pdbx_contact_author.name_first Vincent _pdbx_contact_author.name_last Conticello _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6940-6947 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Das, A.' 1 ? 'Conticello, V.P.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'CryoEM structure of computationally designed bundlemer peptide nanotube (15 protofilament)' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Das, A.' 1 ? primary 'Conticello, V.P.' 2 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Computationally designed coiled coil peptide nanotube' _entity.formula_weight 3170.666 _entity.pdbx_number_of_molecules 8 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'DGRIEGMAEAIKKMAYNIADMAGRIWGEA(NH2)' _entity_poly.pdbx_seq_one_letter_code_can DGRIEGMAEAIKKMAYNIADMAGRIWGEAX _entity_poly.pdbx_strand_id Q,R,S,T,U,V,W,X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 GLY n 1 3 ARG n 1 4 ILE n 1 5 GLU n 1 6 GLY n 1 7 MET n 1 8 ALA n 1 9 GLU n 1 10 ALA n 1 11 ILE n 1 12 LYS n 1 13 LYS n 1 14 MET n 1 15 ALA n 1 16 TYR n 1 17 ASN n 1 18 ILE n 1 19 ALA n 1 20 ASP n 1 21 MET n 1 22 ALA n 1 23 GLY n 1 24 ARG n 1 25 ILE n 1 26 TRP n 1 27 GLY n 1 28 GLU n 1 29 ALA n 1 30 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 30 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP Q . n A 1 2 GLY 2 2 2 GLY GLY Q . n A 1 3 ARG 3 3 3 ARG ARG Q . n A 1 4 ILE 4 4 4 ILE ILE Q . n A 1 5 GLU 5 5 5 GLU GLU Q . n A 1 6 GLY 6 6 6 GLY GLY Q . n A 1 7 MET 7 7 7 MET MET Q . n A 1 8 ALA 8 8 8 ALA ALA Q . n A 1 9 GLU 9 9 9 GLU GLU Q . n A 1 10 ALA 10 10 10 ALA ALA Q . n A 1 11 ILE 11 11 11 ILE ILE Q . n A 1 12 LYS 12 12 12 LYS LYS Q . n A 1 13 LYS 13 13 13 LYS LYS Q . n A 1 14 MET 14 14 14 MET MET Q . n A 1 15 ALA 15 15 15 ALA ALA Q . n A 1 16 TYR 16 16 16 TYR TYR Q . n A 1 17 ASN 17 17 17 ASN ASN Q . n A 1 18 ILE 18 18 18 ILE ILE Q . n A 1 19 ALA 19 19 19 ALA ALA Q . n A 1 20 ASP 20 20 20 ASP ASP Q . n A 1 21 MET 21 21 21 MET MET Q . n A 1 22 ALA 22 22 22 ALA ALA Q . n A 1 23 GLY 23 23 23 GLY GLY Q . n A 1 24 ARG 24 24 24 ARG ARG Q . n A 1 25 ILE 25 25 25 ILE ILE Q . n A 1 26 TRP 26 26 26 TRP TRP Q . n A 1 27 GLY 27 27 27 GLY GLY Q . n A 1 28 GLU 28 28 28 GLU GLU Q . n A 1 29 ALA 29 29 29 ALA ALA Q . n A 1 30 NH2 30 30 30 NH2 NH2 Q . n B 1 1 ASP 1 1 1 ASP ASP R . n B 1 2 GLY 2 2 2 GLY GLY R . n B 1 3 ARG 3 3 3 ARG ARG R . n B 1 4 ILE 4 4 4 ILE ILE R . n B 1 5 GLU 5 5 5 GLU GLU R . n B 1 6 GLY 6 6 6 GLY GLY R . n B 1 7 MET 7 7 7 MET MET R . n B 1 8 ALA 8 8 8 ALA ALA R . n B 1 9 GLU 9 9 9 GLU GLU R . n B 1 10 ALA 10 10 10 ALA ALA R . n B 1 11 ILE 11 11 11 ILE ILE R . n B 1 12 LYS 12 12 12 LYS LYS R . n B 1 13 LYS 13 13 13 LYS LYS R . n B 1 14 MET 14 14 14 MET MET R . n B 1 15 ALA 15 15 15 ALA ALA R . n B 1 16 TYR 16 16 16 TYR TYR R . n B 1 17 ASN 17 17 17 ASN ASN R . n B 1 18 ILE 18 18 18 ILE ILE R . n B 1 19 ALA 19 19 19 ALA ALA R . n B 1 20 ASP 20 20 20 ASP ASP R . n B 1 21 MET 21 21 21 MET MET R . n B 1 22 ALA 22 22 22 ALA ALA R . n B 1 23 GLY 23 23 23 GLY GLY R . n B 1 24 ARG 24 24 24 ARG ARG R . n B 1 25 ILE 25 25 25 ILE ILE R . n B 1 26 TRP 26 26 26 TRP TRP R . n B 1 27 GLY 27 27 27 GLY GLY R . n B 1 28 GLU 28 28 28 GLU GLU R . n B 1 29 ALA 29 29 29 ALA ALA R . n B 1 30 NH2 30 30 30 NH2 NH2 R . n C 1 1 ASP 1 1 1 ASP ASP S . n C 1 2 GLY 2 2 2 GLY GLY S . n C 1 3 ARG 3 3 3 ARG ARG S . n C 1 4 ILE 4 4 4 ILE ILE S . n C 1 5 GLU 5 5 5 GLU GLU S . n C 1 6 GLY 6 6 6 GLY GLY S . n C 1 7 MET 7 7 7 MET MET S . n C 1 8 ALA 8 8 8 ALA ALA S . n C 1 9 GLU 9 9 9 GLU GLU S . n C 1 10 ALA 10 10 10 ALA ALA S . n C 1 11 ILE 11 11 11 ILE ILE S . n C 1 12 LYS 12 12 12 LYS LYS S . n C 1 13 LYS 13 13 13 LYS LYS S . n C 1 14 MET 14 14 14 MET MET S . n C 1 15 ALA 15 15 15 ALA ALA S . n C 1 16 TYR 16 16 16 TYR TYR S . n C 1 17 ASN 17 17 17 ASN ASN S . n C 1 18 ILE 18 18 18 ILE ILE S . n C 1 19 ALA 19 19 19 ALA ALA S . n C 1 20 ASP 20 20 20 ASP ASP S . n C 1 21 MET 21 21 21 MET MET S . n C 1 22 ALA 22 22 22 ALA ALA S . n C 1 23 GLY 23 23 23 GLY GLY S . n C 1 24 ARG 24 24 24 ARG ARG S . n C 1 25 ILE 25 25 25 ILE ILE S . n C 1 26 TRP 26 26 26 TRP TRP S . n C 1 27 GLY 27 27 27 GLY GLY S . n C 1 28 GLU 28 28 28 GLU GLU S . n C 1 29 ALA 29 29 29 ALA ALA S . n C 1 30 NH2 30 30 30 NH2 NH2 S . n D 1 1 ASP 1 1 1 ASP ASP T . n D 1 2 GLY 2 2 2 GLY GLY T . n D 1 3 ARG 3 3 3 ARG ARG T . n D 1 4 ILE 4 4 4 ILE ILE T . n D 1 5 GLU 5 5 5 GLU GLU T . n D 1 6 GLY 6 6 6 GLY GLY T . n D 1 7 MET 7 7 7 MET MET T . n D 1 8 ALA 8 8 8 ALA ALA T . n D 1 9 GLU 9 9 9 GLU GLU T . n D 1 10 ALA 10 10 10 ALA ALA T . n D 1 11 ILE 11 11 11 ILE ILE T . n D 1 12 LYS 12 12 12 LYS LYS T . n D 1 13 LYS 13 13 13 LYS LYS T . n D 1 14 MET 14 14 14 MET MET T . n D 1 15 ALA 15 15 15 ALA ALA T . n D 1 16 TYR 16 16 16 TYR TYR T . n D 1 17 ASN 17 17 17 ASN ASN T . n D 1 18 ILE 18 18 18 ILE ILE T . n D 1 19 ALA 19 19 19 ALA ALA T . n D 1 20 ASP 20 20 20 ASP ASP T . n D 1 21 MET 21 21 21 MET MET T . n D 1 22 ALA 22 22 22 ALA ALA T . n D 1 23 GLY 23 23 23 GLY GLY T . n D 1 24 ARG 24 24 24 ARG ARG T . n D 1 25 ILE 25 25 25 ILE ILE T . n D 1 26 TRP 26 26 26 TRP TRP T . n D 1 27 GLY 27 27 27 GLY GLY T . n D 1 28 GLU 28 28 28 GLU GLU T . n D 1 29 ALA 29 29 29 ALA ALA T . n D 1 30 NH2 30 30 30 NH2 NH2 T . n E 1 1 ASP 1 1 1 ASP ASP U . n E 1 2 GLY 2 2 2 GLY GLY U . n E 1 3 ARG 3 3 3 ARG ARG U . n E 1 4 ILE 4 4 4 ILE ILE U . n E 1 5 GLU 5 5 5 GLU GLU U . n E 1 6 GLY 6 6 6 GLY GLY U . n E 1 7 MET 7 7 7 MET MET U . n E 1 8 ALA 8 8 8 ALA ALA U . n E 1 9 GLU 9 9 9 GLU GLU U . n E 1 10 ALA 10 10 10 ALA ALA U . n E 1 11 ILE 11 11 11 ILE ILE U . n E 1 12 LYS 12 12 12 LYS LYS U . n E 1 13 LYS 13 13 13 LYS LYS U . n E 1 14 MET 14 14 14 MET MET U . n E 1 15 ALA 15 15 15 ALA ALA U . n E 1 16 TYR 16 16 16 TYR TYR U . n E 1 17 ASN 17 17 17 ASN ASN U . n E 1 18 ILE 18 18 18 ILE ILE U . n E 1 19 ALA 19 19 19 ALA ALA U . n E 1 20 ASP 20 20 20 ASP ASP U . n E 1 21 MET 21 21 21 MET MET U . n E 1 22 ALA 22 22 22 ALA ALA U . n E 1 23 GLY 23 23 23 GLY GLY U . n E 1 24 ARG 24 24 24 ARG ARG U . n E 1 25 ILE 25 25 25 ILE ILE U . n E 1 26 TRP 26 26 26 TRP TRP U . n E 1 27 GLY 27 27 27 GLY GLY U . n E 1 28 GLU 28 28 28 GLU GLU U . n E 1 29 ALA 29 29 29 ALA ALA U . n E 1 30 NH2 30 30 30 NH2 NH2 U . n F 1 1 ASP 1 1 1 ASP ASP V . n F 1 2 GLY 2 2 2 GLY GLY V . n F 1 3 ARG 3 3 3 ARG ARG V . n F 1 4 ILE 4 4 4 ILE ILE V . n F 1 5 GLU 5 5 5 GLU GLU V . n F 1 6 GLY 6 6 6 GLY GLY V . n F 1 7 MET 7 7 7 MET MET V . n F 1 8 ALA 8 8 8 ALA ALA V . n F 1 9 GLU 9 9 9 GLU GLU V . n F 1 10 ALA 10 10 10 ALA ALA V . n F 1 11 ILE 11 11 11 ILE ILE V . n F 1 12 LYS 12 12 12 LYS LYS V . n F 1 13 LYS 13 13 13 LYS LYS V . n F 1 14 MET 14 14 14 MET MET V . n F 1 15 ALA 15 15 15 ALA ALA V . n F 1 16 TYR 16 16 16 TYR TYR V . n F 1 17 ASN 17 17 17 ASN ASN V . n F 1 18 ILE 18 18 18 ILE ILE V . n F 1 19 ALA 19 19 19 ALA ALA V . n F 1 20 ASP 20 20 20 ASP ASP V . n F 1 21 MET 21 21 21 MET MET V . n F 1 22 ALA 22 22 22 ALA ALA V . n F 1 23 GLY 23 23 23 GLY GLY V . n F 1 24 ARG 24 24 24 ARG ARG V . n F 1 25 ILE 25 25 25 ILE ILE V . n F 1 26 TRP 26 26 26 TRP TRP V . n F 1 27 GLY 27 27 27 GLY GLY V . n F 1 28 GLU 28 28 28 GLU GLU V . n F 1 29 ALA 29 29 29 ALA ALA V . n F 1 30 NH2 30 30 30 NH2 NH2 V . n G 1 1 ASP 1 1 1 ASP ASP W . n G 1 2 GLY 2 2 2 GLY GLY W . n G 1 3 ARG 3 3 3 ARG ARG W . n G 1 4 ILE 4 4 4 ILE ILE W . n G 1 5 GLU 5 5 5 GLU GLU W . n G 1 6 GLY 6 6 6 GLY GLY W . n G 1 7 MET 7 7 7 MET MET W . n G 1 8 ALA 8 8 8 ALA ALA W . n G 1 9 GLU 9 9 9 GLU GLU W . n G 1 10 ALA 10 10 10 ALA ALA W . n G 1 11 ILE 11 11 11 ILE ILE W . n G 1 12 LYS 12 12 12 LYS LYS W . n G 1 13 LYS 13 13 13 LYS LYS W . n G 1 14 MET 14 14 14 MET MET W . n G 1 15 ALA 15 15 15 ALA ALA W . n G 1 16 TYR 16 16 16 TYR TYR W . n G 1 17 ASN 17 17 17 ASN ASN W . n G 1 18 ILE 18 18 18 ILE ILE W . n G 1 19 ALA 19 19 19 ALA ALA W . n G 1 20 ASP 20 20 20 ASP ASP W . n G 1 21 MET 21 21 21 MET MET W . n G 1 22 ALA 22 22 22 ALA ALA W . n G 1 23 GLY 23 23 23 GLY GLY W . n G 1 24 ARG 24 24 24 ARG ARG W . n G 1 25 ILE 25 25 25 ILE ILE W . n G 1 26 TRP 26 26 26 TRP TRP W . n G 1 27 GLY 27 27 27 GLY GLY W . n G 1 28 GLU 28 28 28 GLU GLU W . n G 1 29 ALA 29 29 29 ALA ALA W . n G 1 30 NH2 30 30 30 NH2 NH2 W . n H 1 1 ASP 1 1 1 ASP ASP X . n H 1 2 GLY 2 2 2 GLY GLY X . n H 1 3 ARG 3 3 3 ARG ARG X . n H 1 4 ILE 4 4 4 ILE ILE X . n H 1 5 GLU 5 5 5 GLU GLU X . n H 1 6 GLY 6 6 6 GLY GLY X . n H 1 7 MET 7 7 7 MET MET X . n H 1 8 ALA 8 8 8 ALA ALA X . n H 1 9 GLU 9 9 9 GLU GLU X . n H 1 10 ALA 10 10 10 ALA ALA X . n H 1 11 ILE 11 11 11 ILE ILE X . n H 1 12 LYS 12 12 12 LYS LYS X . n H 1 13 LYS 13 13 13 LYS LYS X . n H 1 14 MET 14 14 14 MET MET X . n H 1 15 ALA 15 15 15 ALA ALA X . n H 1 16 TYR 16 16 16 TYR TYR X . n H 1 17 ASN 17 17 17 ASN ASN X . n H 1 18 ILE 18 18 18 ILE ILE X . n H 1 19 ALA 19 19 19 ALA ALA X . n H 1 20 ASP 20 20 20 ASP ASP X . n H 1 21 MET 21 21 21 MET MET X . n H 1 22 ALA 22 22 22 ALA ALA X . n H 1 23 GLY 23 23 23 GLY GLY X . n H 1 24 ARG 24 24 24 ARG ARG X . n H 1 25 ILE 25 25 25 ILE ILE X . n H 1 26 TRP 26 26 26 TRP TRP X . n H 1 27 GLY 27 27 27 GLY GLY X . n H 1 28 GLU 28 28 28 GLU GLU X . n H 1 29 ALA 29 29 29 ALA ALA X . n H 1 30 NH2 30 30 30 NH2 NH2 X . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9NO9 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9NO9 _struct.title 'CryoEM structure of computationally designed bundlemer peptide nanotube (15 protofilament)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9NO9 _struct_keywords.text 'Coiled-coil, Nanotube, Helical, Bundlemer, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9NO9 _struct_ref.pdbx_db_accession 9NO9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9NO9 Q 1 ? 30 ? 9NO9 1 ? 30 ? 1 30 2 1 9NO9 R 1 ? 30 ? 9NO9 1 ? 30 ? 1 30 3 1 9NO9 S 1 ? 30 ? 9NO9 1 ? 30 ? 1 30 4 1 9NO9 T 1 ? 30 ? 9NO9 1 ? 30 ? 1 30 5 1 9NO9 U 1 ? 30 ? 9NO9 1 ? 30 ? 1 30 6 1 9NO9 V 1 ? 30 ? 9NO9 1 ? 30 ? 1 30 7 1 9NO9 W 1 ? 30 ? 9NO9 1 ? 30 ? 1 30 8 1 9NO9 X 1 ? 30 ? 9NO9 1 ? 30 ? 1 30 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 280-meric _pdbx_struct_assembly.oligomeric_count 280 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 2 'point symmetry operation' ? ? 0.91135299 -0.41162570 0.0 136.30305265 0.41162570 0.91135299 0.0 -88.00128938 0.0 0.0 1.0 4.43800000 3 'point symmetry operation' ? ? 0.66112856 -0.75027264 0.0 296.74684048 0.75027264 0.66112856 0.0 -112.09568785 0.0 0.0 1.0 8.87600000 4 'point symmetry operation' ? ? 0.29368999 -0.95590072 0.0 452.88564062 0.95590072 0.29368999 0.0 -68.01140284 0.0 0.0 1.0 13.31400000 5 'point symmetry operation' ? ? -0.12581806 -0.99205333 0.0 577.03697871 0.99205333 -0.12581806 0.0 36.43568589 0.0 0.0 1.0 17.75200000 6 'point symmetry operation' ? ? -0.52301932 -0.85232083 0.0 647.18956590 0.85232083 -0.52301932 0.0 182.72773489 0.0 0.0 1.0 22.19000000 7 'point symmetry operation' ? ? -0.82749238 -0.56147695 0.0 650.90576853 0.56147695 -0.82749238 0.0 344.92803986 0.0 0.0 1.0 26.62800000 8 'point symmetry operation' ? ? -0.98525600 -0.17108656 0.0 587.52672613 0.17108656 -0.98525600 0.0 494.27945792 0.0 0.0 1.0 31.06600000 9 'point symmetry operation' ? ? -0.96833963 0.24963645 0.0 468.28916343 -0.24963645 -0.96833963 0.0 604.30287694 0.0 0.0 1.0 35.50400000 10 'point symmetry operation' ? ? -0.77974245 0.62610041 0.0 314.33318631 -0.62610041 -0.77974245 0.0 655.49180351 0.0 0.0 1.0 39.94200000 11 'point symmetry operation' ? ? -0.45290159 0.89156051 0.0 152.95426768 -0.89156051 -0.45290159 0.0 638.77074746 0.0 0.0 1.0 44.38000000 12 'point symmetry operation' ? ? -0.04576400 0.99895228 0.0 12.76392352 -0.99895228 -0.04576400 0.0 557.10425190 0.0 0.0 1.0 48.81800000 13 'point symmetry operation' ? ? 0.36948728 0.92923579 0.0 -81.38293758 -0.92923579 0.36948728 0.0 424.97129750 0.0 0.0 1.0 53.25600000 14 'point symmetry operation' ? ? 0.71923067 0.69477136 0.0 -112.79464087 -0.69477136 0.71923067 0.0 265.79826590 0.0 0.0 1.0 57.69400000 15 'point symmetry operation' ? ? 0.94145878 0.33712812 0.0 -75.90207945 -0.33712812 0.94145878 0.0 107.80558252 0.0 0.0 1.0 62.13200000 16 'point symmetry operation' ? ? 0.99677188 -0.08028591 0.0 22.75391646 0.08028591 0.99677188 0.0 -20.99559592 0.0 0.0 1.0 66.57000000 17 'point symmetry operation' ? ? 0.87536329 -0.48346573 0.0 165.68222949 0.48346573 0.87536329 0.0 -97.76959168 0.0 0.0 1.0 71.00800000 18 'point symmetry operation' ? ? 0.59875803 -0.80092997 0.0 327.54252557 0.80092997 0.59875803 0.0 -108.90483503 0.0 0.0 1.0 75.44600000 19 'point symmetry operation' ? ? 0.21599656 -0.97639412 0.0 479.63794339 0.97639412 0.21599656 0.0 -52.42711400 0.0 0.0 1.0 79.88400000 20 'point symmetry operation' ? ? -0.20505981 -0.97874945 0.0 595.00287606 0.97874945 -0.20505981 0.0 61.65040964 0.0 0.0 1.0 84.32200000 21 'point symmetry operation' ? ? -0.58976030 -0.80757835 0.0 653.18381181 0.80757835 -0.58976030 0.0 213.10247404 0.0 0.0 1.0 88.76000000 22 'point symmetry operation' ? ? -0.86989982 -0.49322845 0.0 643.86561909 0.49322845 -0.86989982 0.0 375.07753501 0.0 0.0 1.0 93.19800000 23 'point symmetry operation' ? ? -0.99581131 -0.09143210 0.0 568.70035768 0.09143210 -0.99581131 0.0 518.85838412 0.0 0.0 1.0 97.63600000 24 'point symmetry operation' ? ? -0.94517142 0.32657462 0.0 441.01437837 -0.32657462 -0.94517142 0.0 618.95353774 0.0 0.0 1.0 102.07400000 25 'point symmetry operation' ? ? -0.72695830 0.68668161 0.0 283.44564072 -0.68668161 -0.72695830 0.0 657.61672447 0.0 0.0 1.0 106.51200000 26 'point symmetry operation' ? ? -0.37985982 0.92504406 0.0 123.93013844 -0.92504406 -0.37985982 0.0 627.99319283 0.0 0.0 1.0 110.95000000 27 'point symmetry operation' ? ? 0.03458553 0.99940174 0.0 -9.25098504 -0.99940174 0.03458553 0.0 535.33501758 0.0 0.0 1.0 115.38800000 28 'point symmetry operation' ? ? 0.44289907 0.89657148 0.0 -92.48551399 -0.89657148 0.44289907 0.0 396.06993839 0.0 0.0 1.0 119.82600000 29 'point symmetry operation' ? ? 0.77268926 0.63478446 0.0 -111.01646482 -0.63478446 0.77268926 0.0 234.88881991 0.0 0.0 1.0 124.26400000 30 'point symmetry operation' ? ? 0.96548627 0.26045396 0.0 -61.55841089 -0.26045396 0.96548627 0.0 80.36810934 0.0 0.0 1.0 128.70200000 31 'point symmetry operation' ? ? 0.98710835 -0.16005347 0.0 47.12003096 0.16005347 0.98710835 0.0 -40.09659657 0.0 0.0 1.0 133.14000000 32 'point symmetry operation' ? ? 0.83372202 -0.55218438 0.0 195.75082374 0.55218438 0.83372202 0.0 -105.14762676 0.0 0.0 1.0 137.57800000 33 'point symmetry operation' ? ? 0.53252178 -0.84641630 0.0 357.98261785 0.84641630 0.53252178 0.0 -103.25182311 0.0 0.0 1.0 142.01600000 34 'point symmetry operation' ? ? 0.13690861 -0.99058368 0.0 505.05268760 0.99058368 0.13690861 0.0 -34.74530023 0.0 0.0 1.0 146.45400000 35 'point symmetry operation' ? ? -0.28297764 -0.95912651 0.0 610.88639024 0.95912651 -0.28297764 0.0 88.22614556 0.0 0.0 1.0 150.89200000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 1 ? ALA A 29 ? ASP Q 1 ALA Q 29 1 ? 29 HELX_P HELX_P2 AA2 GLY B 2 ? ALA B 29 ? GLY R 2 ALA R 29 1 ? 28 HELX_P HELX_P3 AA3 GLY C 2 ? ALA C 29 ? GLY S 2 ALA S 29 1 ? 28 HELX_P HELX_P4 AA4 GLY D 2 ? ALA D 29 ? GLY T 2 ALA T 29 1 ? 28 HELX_P HELX_P5 AA5 GLY E 2 ? ALA E 29 ? GLY U 2 ALA U 29 1 ? 28 HELX_P HELX_P6 AA6 GLY F 2 ? ALA F 29 ? GLY V 2 ALA V 29 1 ? 28 HELX_P HELX_P7 AA7 GLY G 2 ? ALA G 29 ? GLY W 2 ALA W 29 1 ? 28 HELX_P HELX_P8 AA8 GLY H 2 ? ALA H 29 ? GLY X 2 ALA X 29 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ALA 29 C ? ? ? 1_555 A NH2 30 N ? ? Q ALA 29 Q NH2 30 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale2 covale both ? B ALA 29 C ? ? ? 1_555 B NH2 30 N ? ? R ALA 29 R NH2 30 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? C ALA 29 C ? ? ? 1_555 C NH2 30 N ? ? S ALA 29 S NH2 30 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? D ALA 29 C ? ? ? 1_555 D NH2 30 N ? ? T ALA 29 T NH2 30 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale5 covale both ? E ALA 29 C ? ? ? 1_555 E NH2 30 N ? ? U ALA 29 U NH2 30 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale6 covale both ? F ALA 29 C ? ? ? 1_555 F NH2 30 N ? ? V ALA 29 V NH2 30 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale7 covale both ? G ALA 29 C ? ? ? 1_555 G NH2 30 N ? ? W ALA 29 W NH2 30 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale8 covale both ? H ALA 29 C ? ? ? 1_555 H NH2 30 N ? ? X ALA 29 X NH2 30 1_555 ? ? ? ? ? ? ? 1.325 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NH2 A 30 ? ALA A 29 ? NH2 Q 30 ? 1_555 ALA Q 29 ? 1_555 . . ALA 1 NH2 None 'Terminal amidation' 2 NH2 B 30 ? ALA B 29 ? NH2 R 30 ? 1_555 ALA R 29 ? 1_555 . . ALA 1 NH2 None 'Terminal amidation' 3 NH2 C 30 ? ALA C 29 ? NH2 S 30 ? 1_555 ALA S 29 ? 1_555 . . ALA 1 NH2 None 'Terminal amidation' 4 NH2 D 30 ? ALA D 29 ? NH2 T 30 ? 1_555 ALA T 29 ? 1_555 . . ALA 1 NH2 None 'Terminal amidation' 5 NH2 E 30 ? ALA E 29 ? NH2 U 30 ? 1_555 ALA U 29 ? 1_555 . . ALA 1 NH2 None 'Terminal amidation' 6 NH2 F 30 ? ALA F 29 ? NH2 V 30 ? 1_555 ALA V 29 ? 1_555 . . ALA 1 NH2 None 'Terminal amidation' 7 NH2 G 30 ? ALA G 29 ? NH2 W 30 ? 1_555 ALA W 29 ? 1_555 . . ALA 1 NH2 None 'Terminal amidation' 8 NH2 H 30 ? ALA H 29 ? NH2 X 30 ? 1_555 ALA X 29 ? 1_555 . . ALA 1 NH2 None 'Terminal amidation' # _pdbx_entry_details.entry_id 9NO9 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE Q ARG 3 ? ? CZ Q ARG 3 ? ? NH1 Q ARG 3 ? ? 123.51 120.30 3.21 0.50 N 2 1 NE S ARG 3 ? ? CZ S ARG 3 ? ? NH1 S ARG 3 ? ? 123.63 120.30 3.33 0.50 N 3 1 NE V ARG 3 ? ? CZ V ARG 3 ? ? NH1 V ARG 3 ? ? 123.55 120.30 3.25 0.50 N 4 1 CB V TYR 16 ? ? CG V TYR 16 ? ? CD2 V TYR 16 ? ? 117.38 121.00 -3.62 0.60 N 5 1 NE W ARG 3 ? ? CZ W ARG 3 ? ? NH1 W ARG 3 ? ? 124.37 120.30 4.07 0.50 N 6 1 NE X ARG 3 ? ? CZ X ARG 3 ? ? NH1 X ARG 3 ? ? 124.45 120.30 4.15 0.50 N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9NO9 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 117.3 _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9NO9 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.61 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 52135 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 4.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Coiled-coil bundlemer nanotube, R3 (14 protofilaments)' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9NO9 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 600 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9NO9 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9NO9 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLU N N N N 74 GLU CA C N S 75 GLU C C N N 76 GLU O O N N 77 GLU CB C N N 78 GLU CG C N N 79 GLU CD C N N 80 GLU OE1 O N N 81 GLU OE2 O N N 82 GLU OXT O N N 83 GLU H H N N 84 GLU H2 H N N 85 GLU HA H N N 86 GLU HB2 H N N 87 GLU HB3 H N N 88 GLU HG2 H N N 89 GLU HG3 H N N 90 GLU HE2 H N N 91 GLU HXT H N N 92 GLY N N N N 93 GLY CA C N N 94 GLY C C N N 95 GLY O O N N 96 GLY OXT O N N 97 GLY H H N N 98 GLY H2 H N N 99 GLY HA2 H N N 100 GLY HA3 H N N 101 GLY HXT H N N 102 ILE N N N N 103 ILE CA C N S 104 ILE C C N N 105 ILE O O N N 106 ILE CB C N S 107 ILE CG1 C N N 108 ILE CG2 C N N 109 ILE CD1 C N N 110 ILE OXT O N N 111 ILE H H N N 112 ILE H2 H N N 113 ILE HA H N N 114 ILE HB H N N 115 ILE HG12 H N N 116 ILE HG13 H N N 117 ILE HG21 H N N 118 ILE HG22 H N N 119 ILE HG23 H N N 120 ILE HD11 H N N 121 ILE HD12 H N N 122 ILE HD13 H N N 123 ILE HXT H N N 124 LYS N N N N 125 LYS CA C N S 126 LYS C C N N 127 LYS O O N N 128 LYS CB C N N 129 LYS CG C N N 130 LYS CD C N N 131 LYS CE C N N 132 LYS NZ N N N 133 LYS OXT O N N 134 LYS H H N N 135 LYS H2 H N N 136 LYS HA H N N 137 LYS HB2 H N N 138 LYS HB3 H N N 139 LYS HG2 H N N 140 LYS HG3 H N N 141 LYS HD2 H N N 142 LYS HD3 H N N 143 LYS HE2 H N N 144 LYS HE3 H N N 145 LYS HZ1 H N N 146 LYS HZ2 H N N 147 LYS HZ3 H N N 148 LYS HXT H N N 149 MET N N N N 150 MET CA C N S 151 MET C C N N 152 MET O O N N 153 MET CB C N N 154 MET CG C N N 155 MET SD S N N 156 MET CE C N N 157 MET OXT O N N 158 MET H H N N 159 MET H2 H N N 160 MET HA H N N 161 MET HB2 H N N 162 MET HB3 H N N 163 MET HG2 H N N 164 MET HG3 H N N 165 MET HE1 H N N 166 MET HE2 H N N 167 MET HE3 H N N 168 MET HXT H N N 169 NH2 N N N N 170 NH2 HN1 H N N 171 NH2 HN2 H N N 172 TRP N N N N 173 TRP CA C N S 174 TRP C C N N 175 TRP O O N N 176 TRP CB C N N 177 TRP CG C Y N 178 TRP CD1 C Y N 179 TRP CD2 C Y N 180 TRP NE1 N Y N 181 TRP CE2 C Y N 182 TRP CE3 C Y N 183 TRP CZ2 C Y N 184 TRP CZ3 C Y N 185 TRP CH2 C Y N 186 TRP OXT O N N 187 TRP H H N N 188 TRP H2 H N N 189 TRP HA H N N 190 TRP HB2 H N N 191 TRP HB3 H N N 192 TRP HD1 H N N 193 TRP HE1 H N N 194 TRP HE3 H N N 195 TRP HZ2 H N N 196 TRP HZ3 H N N 197 TRP HH2 H N N 198 TRP HXT H N N 199 TYR N N N N 200 TYR CA C N S 201 TYR C C N N 202 TYR O O N N 203 TYR CB C N N 204 TYR CG C Y N 205 TYR CD1 C Y N 206 TYR CD2 C Y N 207 TYR CE1 C Y N 208 TYR CE2 C Y N 209 TYR CZ C Y N 210 TYR OH O N N 211 TYR OXT O N N 212 TYR H H N N 213 TYR H2 H N N 214 TYR HA H N N 215 TYR HB2 H N N 216 TYR HB3 H N N 217 TYR HD1 H N N 218 TYR HD2 H N N 219 TYR HE1 H N N 220 TYR HE2 H N N 221 TYR HH H N N 222 TYR HXT H N N 223 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLU N CA sing N N 70 GLU N H sing N N 71 GLU N H2 sing N N 72 GLU CA C sing N N 73 GLU CA CB sing N N 74 GLU CA HA sing N N 75 GLU C O doub N N 76 GLU C OXT sing N N 77 GLU CB CG sing N N 78 GLU CB HB2 sing N N 79 GLU CB HB3 sing N N 80 GLU CG CD sing N N 81 GLU CG HG2 sing N N 82 GLU CG HG3 sing N N 83 GLU CD OE1 doub N N 84 GLU CD OE2 sing N N 85 GLU OE2 HE2 sing N N 86 GLU OXT HXT sing N N 87 GLY N CA sing N N 88 GLY N H sing N N 89 GLY N H2 sing N N 90 GLY CA C sing N N 91 GLY CA HA2 sing N N 92 GLY CA HA3 sing N N 93 GLY C O doub N N 94 GLY C OXT sing N N 95 GLY OXT HXT sing N N 96 ILE N CA sing N N 97 ILE N H sing N N 98 ILE N H2 sing N N 99 ILE CA C sing N N 100 ILE CA CB sing N N 101 ILE CA HA sing N N 102 ILE C O doub N N 103 ILE C OXT sing N N 104 ILE CB CG1 sing N N 105 ILE CB CG2 sing N N 106 ILE CB HB sing N N 107 ILE CG1 CD1 sing N N 108 ILE CG1 HG12 sing N N 109 ILE CG1 HG13 sing N N 110 ILE CG2 HG21 sing N N 111 ILE CG2 HG22 sing N N 112 ILE CG2 HG23 sing N N 113 ILE CD1 HD11 sing N N 114 ILE CD1 HD12 sing N N 115 ILE CD1 HD13 sing N N 116 ILE OXT HXT sing N N 117 LYS N CA sing N N 118 LYS N H sing N N 119 LYS N H2 sing N N 120 LYS CA C sing N N 121 LYS CA CB sing N N 122 LYS CA HA sing N N 123 LYS C O doub N N 124 LYS C OXT sing N N 125 LYS CB CG sing N N 126 LYS CB HB2 sing N N 127 LYS CB HB3 sing N N 128 LYS CG CD sing N N 129 LYS CG HG2 sing N N 130 LYS CG HG3 sing N N 131 LYS CD CE sing N N 132 LYS CD HD2 sing N N 133 LYS CD HD3 sing N N 134 LYS CE NZ sing N N 135 LYS CE HE2 sing N N 136 LYS CE HE3 sing N N 137 LYS NZ HZ1 sing N N 138 LYS NZ HZ2 sing N N 139 LYS NZ HZ3 sing N N 140 LYS OXT HXT sing N N 141 MET N CA sing N N 142 MET N H sing N N 143 MET N H2 sing N N 144 MET CA C sing N N 145 MET CA CB sing N N 146 MET CA HA sing N N 147 MET C O doub N N 148 MET C OXT sing N N 149 MET CB CG sing N N 150 MET CB HB2 sing N N 151 MET CB HB3 sing N N 152 MET CG SD sing N N 153 MET CG HG2 sing N N 154 MET CG HG3 sing N N 155 MET SD CE sing N N 156 MET CE HE1 sing N N 157 MET CE HE2 sing N N 158 MET CE HE3 sing N N 159 MET OXT HXT sing N N 160 NH2 N HN1 sing N N 161 NH2 N HN2 sing N N 162 TRP N CA sing N N 163 TRP N H sing N N 164 TRP N H2 sing N N 165 TRP CA C sing N N 166 TRP CA CB sing N N 167 TRP CA HA sing N N 168 TRP C O doub N N 169 TRP C OXT sing N N 170 TRP CB CG sing N N 171 TRP CB HB2 sing N N 172 TRP CB HB3 sing N N 173 TRP CG CD1 doub Y N 174 TRP CG CD2 sing Y N 175 TRP CD1 NE1 sing Y N 176 TRP CD1 HD1 sing N N 177 TRP CD2 CE2 doub Y N 178 TRP CD2 CE3 sing Y N 179 TRP NE1 CE2 sing Y N 180 TRP NE1 HE1 sing N N 181 TRP CE2 CZ2 sing Y N 182 TRP CE3 CZ3 doub Y N 183 TRP CE3 HE3 sing N N 184 TRP CZ2 CH2 doub Y N 185 TRP CZ2 HZ2 sing N N 186 TRP CZ3 CH2 sing Y N 187 TRP CZ3 HZ3 sing N N 188 TRP CH2 HH2 sing N N 189 TRP OXT HXT sing N N 190 TYR N CA sing N N 191 TYR N H sing N N 192 TYR N H2 sing N N 193 TYR CA C sing N N 194 TYR CA CB sing N N 195 TYR CA HA sing N N 196 TYR C O doub N N 197 TYR C OXT sing N N 198 TYR CB CG sing N N 199 TYR CB HB2 sing N N 200 TYR CB HB3 sing N N 201 TYR CG CD1 doub Y N 202 TYR CG CD2 sing Y N 203 TYR CD1 CE1 sing Y N 204 TYR CD1 HD1 sing N N 205 TYR CD2 CE2 doub Y N 206 TYR CD2 HD2 sing N N 207 TYR CE1 CZ doub Y N 208 TYR CE1 HE1 sing N N 209 TYR CE2 CZ sing Y N 210 TYR CE2 HE2 sing N N 211 TYR CZ OH sing N N 212 TYR OH HH sing N N 213 TYR OXT HXT sing N N 214 # _em_admin.current_status REL _em_admin.deposition_date 2025-03-08 _em_admin.deposition_site RCSB _em_admin.entry_id 9NO9 _em_admin.last_update 2026-03-25 _em_admin.map_release_date 2026-03-25 _em_admin.title 'CryoEM structure of computationally designed bundlemer peptide nanotube (15 protofilament)' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 24.307 _em_helical_entity.axial_rise_per_subunit 4.438 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 53.7 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOCONTINUUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ? ? OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? CLASSIFICATION ? 11 1 ? ? ? ? RECONSTRUCTION ? 12 1 ? ? cryoSPARC ? 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX 1.20.1_4487 # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9NO9 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ #