HEADER DNA BINDING PROTEIN 26-MAR-25 9NY1 TITLE LMUA_CONFORMATION 2_ASSYMETRIC COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC-THREE COMPONENT SYSTEMS C-TERMINAL DOMAIN-CONTAINING COMPND 3 PROTEIN; COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: D6U24_12485, ERS013200_03523, ERS013201_03639, KIN13_15850, SOURCE 5 VC_0492; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LMUA_ASYMMETRIC, DNA BINDING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR A.CHAKRAVARTI,Z.ZHANG REVDAT 1 17-DEC-25 9NY1 0 JRNL AUTH M.HAUDIQUET,A.CHAKRAVARTI,Z.ZHANG,J.L.RAMIREZ, JRNL AUTH 2 A.HERRERO DEL VALLE,P.D.B.OLINARES,R.LAVENIR,M.A.AHMED, JRNL AUTH 3 M.J.DE LA CRUZ,B.T.CHAIT,S.H.STERNBERG,A.BERNHEIM,D.J.PATEL JRNL TITL STRUCTURAL BASIS FOR LAMASSU-BASED ANTIVIRAL IMMUNITY AND JRNL TITL 2 ITS EVOLUTION FROM DNA REPAIR MACHINERY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 43122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 41252147 JRNL DOI 10.1073/PNAS.2519643122 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.400 REMARK 3 NUMBER OF PARTICLES : 197714 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9NY1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1000294463. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : CELL REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PROTEIN REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : OTHER REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5300.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 SER A 5 REMARK 465 THR A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 TRP A 12 REMARK 465 GLU A 44 REMARK 465 GLU A 45 REMARK 465 HIS A 46 REMARK 465 THR A 47 REMARK 465 GLY A 48 REMARK 465 SER A 49 REMARK 465 THR A 50 REMARK 465 SER A 51 REMARK 465 THR A 52 REMARK 465 PHE A 53 REMARK 465 GLU A 54 REMARK 465 GLN A 55 REMARK 465 ASP A 56 REMARK 465 ALA A 57 REMARK 465 ILE A 58 REMARK 465 SER A 59 REMARK 465 THR A 60 REMARK 465 THR A 61 REMARK 465 GLY A 62 REMARK 465 GLY A 384 REMARK 465 ASP A 385 REMARK 465 PRO A 386 REMARK 465 ASP A 387 REMARK 465 ALA A 388 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ASP B 3 REMARK 465 ASN B 4 REMARK 465 SER B 5 REMARK 465 THR B 6 REMARK 465 SER B 7 REMARK 465 ALA B 8 REMARK 465 VAL B 9 REMARK 465 SER B 10 REMARK 465 SER B 11 REMARK 465 ASP B 42 REMARK 465 LEU B 43 REMARK 465 GLU B 44 REMARK 465 GLU B 45 REMARK 465 HIS B 46 REMARK 465 THR B 47 REMARK 465 GLY B 48 REMARK 465 SER B 49 REMARK 465 THR B 50 REMARK 465 SER B 51 REMARK 465 THR B 52 REMARK 465 PHE B 53 REMARK 465 GLU B 54 REMARK 465 GLN B 55 REMARK 465 ASP B 56 REMARK 465 ALA B 57 REMARK 465 ILE B 58 REMARK 465 SER B 59 REMARK 465 THR B 60 REMARK 465 THR B 61 REMARK 465 GLY B 62 REMARK 465 ARG B 63 REMARK 465 GLY B 384 REMARK 465 ASP B 385 REMARK 465 PRO B 386 REMARK 465 ASP B 387 REMARK 465 ALA B 388 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 ASP C 3 REMARK 465 ASN C 4 REMARK 465 SER C 5 REMARK 465 THR C 6 REMARK 465 SER C 7 REMARK 465 ALA C 8 REMARK 465 GLU C 44 REMARK 465 GLU C 45 REMARK 465 HIS C 46 REMARK 465 THR C 47 REMARK 465 GLY C 48 REMARK 465 SER C 49 REMARK 465 THR C 50 REMARK 465 SER C 51 REMARK 465 THR C 52 REMARK 465 PHE C 53 REMARK 465 GLU C 54 REMARK 465 GLN C 55 REMARK 465 ASP C 56 REMARK 465 ALA C 57 REMARK 465 ILE C 58 REMARK 465 SER C 59 REMARK 465 THR C 60 REMARK 465 THR C 61 REMARK 465 GLY C 62 REMARK 465 GLY C 384 REMARK 465 ASP C 385 REMARK 465 PRO C 386 REMARK 465 ASP C 387 REMARK 465 ALA C 388 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 ASP D 3 REMARK 465 ASN D 4 REMARK 465 SER D 5 REMARK 465 THR D 6 REMARK 465 SER D 7 REMARK 465 ALA D 8 REMARK 465 ASP D 42 REMARK 465 LEU D 43 REMARK 465 GLU D 44 REMARK 465 GLU D 45 REMARK 465 HIS D 46 REMARK 465 THR D 47 REMARK 465 GLY D 48 REMARK 465 SER D 49 REMARK 465 THR D 50 REMARK 465 SER D 51 REMARK 465 THR D 52 REMARK 465 PHE D 53 REMARK 465 GLU D 54 REMARK 465 GLN D 55 REMARK 465 ASP D 56 REMARK 465 ALA D 57 REMARK 465 ILE D 58 REMARK 465 SER D 59 REMARK 465 THR D 60 REMARK 465 THR D 61 REMARK 465 GLY D 62 REMARK 465 ARG D 63 REMARK 465 ASP D 385 REMARK 465 PRO D 386 REMARK 465 ASP D 387 REMARK 465 ALA D 388 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 114 OE1 GLN A 116 1.79 REMARK 500 O THR B 151 CD2 LEU B 156 2.09 REMARK 500 O ALA B 153 N ILE B 157 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 125 CG PHE A 125 CD2 0.796 REMARK 500 PHE A 125 CG PHE A 125 CD1 0.827 REMARK 500 PHE A 125 CD1 PHE A 125 CE1 1.660 REMARK 500 PHE A 125 CE1 PHE A 125 CZ 1.734 REMARK 500 PHE A 125 CZ PHE A 125 CE2 1.776 REMARK 500 PHE A 125 CE2 PHE A 125 CD2 1.723 REMARK 500 CYS A 154 CA CYS A 154 C 0.293 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 114 CB - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 THR A 114 N - CA - C ANGL. DEV. = 35.1 DEGREES REMARK 500 SER A 115 N - CA - CB ANGL. DEV. = -17.4 DEGREES REMARK 500 ALA A 121 N - CA - CB ANGL. DEV. = 11.7 DEGREES REMARK 500 ALA A 121 N - CA - C ANGL. DEV. = -19.8 DEGREES REMARK 500 PHE A 125 CB - CG - CD2 ANGL. DEV. = -8.6 DEGREES REMARK 500 PHE A 125 CD1 - CG - CD2 ANGL. DEV. = 13.0 DEGREES REMARK 500 PHE A 125 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 PHE A 125 CZ - CE2 - CD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 CYS A 154 CB - CA - C ANGL. DEV. = 26.3 DEGREES REMARK 500 CYS A 154 N - CA - CB ANGL. DEV. = -28.3 DEGREES REMARK 500 CYS A 154 CA - CB - SG ANGL. DEV. = 18.7 DEGREES REMARK 500 CYS A 154 CA - C - N ANGL. DEV. = 22.2 DEGREES REMARK 500 CYS A 154 O - C - N ANGL. DEV. = -31.3 DEGREES REMARK 500 PRO A 213 C - N - CD ANGL. DEV. = -27.4 DEGREES REMARK 500 ILE A 215 CG1 - CB - CG2 ANGL. DEV. = -16.0 DEGREES REMARK 500 ILE B 39 CB - CA - C ANGL. DEV. = -25.0 DEGREES REMARK 500 ILE B 39 N - CA - CB ANGL. DEV. = -14.8 DEGREES REMARK 500 ILE B 39 N - CA - C ANGL. DEV. = 47.0 DEGREES REMARK 500 LEU B 40 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 LEU B 40 N - CA - CB ANGL. DEV. = -15.6 DEGREES REMARK 500 ASP B 41 N - CA - CB ANGL. DEV. = -11.8 DEGREES REMARK 500 SER B 149 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 THR B 151 N - CA - C ANGL. DEV. = -23.8 DEGREES REMARK 500 ASP B 152 N - CA - CB ANGL. DEV. = -19.4 DEGREES REMARK 500 ASP B 152 N - CA - C ANGL. DEV. = 26.4 DEGREES REMARK 500 ASP C 90 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 CYS C 104 CB - CA - C ANGL. DEV. = -29.8 DEGREES REMARK 500 CYS C 104 N - CA - C ANGL. DEV. = -29.1 DEGREES REMARK 500 HIS C 105 C - N - CA ANGL. DEV. = 36.2 DEGREES REMARK 500 LEU C 371 CA - CB - CG ANGL. DEV. = 21.2 DEGREES REMARK 500 LEU D 27 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 18 -0.14 -145.16 REMARK 500 ILE A 39 53.30 38.46 REMARK 500 ASP A 41 60.47 61.65 REMARK 500 ASP A 42 53.46 -93.94 REMARK 500 ASN A 101 41.22 38.71 REMARK 500 CYS A 104 -9.49 72.48 REMARK 500 GLN A 116 -162.88 -110.92 REMARK 500 THR A 118 -115.34 49.94 REMARK 500 GLU A 119 -130.03 56.48 REMARK 500 ALA A 121 -134.50 59.71 REMARK 500 LYS A 123 -131.44 55.58 REMARK 500 GLU A 127 68.11 -101.12 REMARK 500 HIS A 134 71.93 52.81 REMARK 500 SER A 136 74.29 53.16 REMARK 500 SER A 168 15.71 -150.73 REMARK 500 HIS A 188 53.02 -95.48 REMARK 500 PRO A 213 -137.96 48.16 REMARK 500 ALA A 258 73.90 57.26 REMARK 500 ASN A 260 46.81 -85.23 REMARK 500 TYR A 261 -30.49 -133.87 REMARK 500 LYS A 370 46.24 -94.33 REMARK 500 LEU A 371 40.92 39.63 REMARK 500 GLN B 18 50.10 -93.31 REMARK 500 CYS B 34 36.22 -98.78 REMARK 500 ILE B 39 39.55 -140.31 REMARK 500 ASP B 72 43.62 -83.08 REMARK 500 SER B 113 56.82 -95.12 REMARK 500 GLN B 116 37.55 -98.43 REMARK 500 SER B 133 18.55 57.15 REMARK 500 HIS B 134 72.72 -161.47 REMARK 500 ALA B 140 69.75 -100.60 REMARK 500 LEU B 143 -4.62 67.79 REMARK 500 ALA B 153 -118.56 54.29 REMARK 500 LYS B 159 41.70 -98.48 REMARK 500 LEU B 189 -3.09 68.11 REMARK 500 LYS B 210 -118.76 59.23 REMARK 500 LEU B 238 -38.82 -132.28 REMARK 500 VAL B 251 -55.32 -128.06 REMARK 500 ALA B 258 74.30 58.33 REMARK 500 GLU B 378 59.04 -94.98 REMARK 500 THR C 114 51.75 -91.96 REMARK 500 SER C 133 -113.43 53.15 REMARK 500 SER C 147 56.20 -95.81 REMARK 500 TYR C 232 47.54 -91.53 REMARK 500 THR C 236 50.95 -95.91 REMARK 500 ALA C 258 74.25 55.13 REMARK 500 ASN C 295 -135.57 50.80 REMARK 500 GLU C 351 63.07 39.83 REMARK 500 LEU D 13 -0.59 -141.94 REMARK 500 LEU D 27 46.11 -91.34 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 76 LEU B 77 -146.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 155 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-49915 RELATED DB: EMDB REMARK 900 LMUA_CONFORMATION 2_ASSYMETRIC DBREF1 9NY1 A 1 388 UNP A0A060KT36_VIBCL DBREF2 9NY1 A A0A060KT36 1 388 DBREF1 9NY1 B 1 388 UNP A0A060KT36_VIBCL DBREF2 9NY1 B A0A060KT36 1 388 DBREF1 9NY1 C 1 388 UNP A0A060KT36_VIBCL DBREF2 9NY1 C A0A060KT36 1 388 DBREF1 9NY1 D 1 388 UNP A0A060KT36_VIBCL DBREF2 9NY1 D A0A060KT36 1 388 SEQADV 9NY1 ALA A 57 UNP A0A060KT3 LYS 57 CONFLICT SEQADV 9NY1 ALA B 57 UNP A0A060KT3 LYS 57 CONFLICT SEQADV 9NY1 ALA C 57 UNP A0A060KT3 LYS 57 CONFLICT SEQADV 9NY1 ALA D 57 UNP A0A060KT3 LYS 57 CONFLICT SEQRES 1 A 388 MET LYS ASP ASN SER THR SER ALA VAL SER SER TRP LEU SEQRES 2 A 388 GLY TYR LYS ILE GLN GLU TYR ARG LEU THR GLN ARG LEU SEQRES 3 A 388 LEU GLU ALA ASN ASN SER SER CYS ILE GLY PHE GLU ILE SEQRES 4 A 388 LEU ASP ASP LEU GLU GLU HIS THR GLY SER THR SER THR SEQRES 5 A 388 PHE GLU GLN ASP ALA ILE SER THR THR GLY ARG ASN ILE SEQRES 6 A 388 VAL SER ASN HIS SER LYS ASP LEU TRP LYS THR LEU SER SEQRES 7 A 388 ASN TRP MET ASP LEU ILE ASP SER GLY GLU ILE ASP VAL SEQRES 8 A 388 ASP ASN THR ILE PHE LEU LEU PHE THR ASN LYS ARG CYS SEQRES 9 A 388 HIS SER GLU VAL LEU GLN LEU LEU SER THR SER GLN ALA SEQRES 10 A 388 THR GLU GLU ALA SER LYS ALA PHE ASP GLU ILE LEU LYS SEQRES 11 A 388 ILE VAL SER HIS PRO SER PRO SER ILE ALA ASN TYR LEU SEQRES 12 A 388 ASN ASN PHE SER LYS SER LYS THR ASP ALA CYS ARG LEU SEQRES 13 A 388 ILE SER LYS PHE THR TYR ILE TYR GLY SER GLY SER ALA SEQRES 14 A 388 PRO HIS ASP LEU ARG GLU SER TYR LYS LEU HIS ARG LEU SEQRES 15 A 388 GLY ALA LEU GLU GLU HIS LEU ASP GLU ILE MET TYR GLU SEQRES 16 A 388 ILE LEU GLY TRP VAL SER ASP VAL LEU THR LEU ALA ALA SEQRES 17 A 388 GLU LYS ARG GLN PRO THR ILE VAL ARG ALA LYS ASP PHE SEQRES 18 A 388 GLY ALA ARG LEU GLY GLU ILE GLU SER LYS TYR ARG GLN SEQRES 19 A 388 LYS THR ILE LEU ASN TYR PHE CYS ASN ARG SER SER GLU SEQRES 20 A 388 SER GLU ASP VAL GLN ASN THR ILE LYS ASP ALA PRO ASN SEQRES 21 A 388 TYR ILE LYS GLN LEU ASN LEU ILE ASN VAL ASP ASP SER SEQRES 22 A 388 GLU LEU GLU GLU ALA ALA ILE ALA ASN LEU GLU THR LYS SEQRES 23 A 388 ASP ALA VAL VAL GLU TRP THR LEU ASN GLY ASP VAL GLN SEQRES 24 A 388 ASP TYR SER TYR ARG TYR TYR GLN ARG GLU LEU ARG ARG SEQRES 25 A 388 CYS TRP GLY ILE GLN LYS GLN LYS ILE HIS LEU ASP PHE SEQRES 26 A 388 ASN GLY ARG PRO GLU THR GLU VAL GLY GLN ARG LEU TYR SEQRES 27 A 388 ILE GLU CYS LEU ASN ASN VAL THR ARG TYR TYR LEU GLU SEQRES 28 A 388 ASN LYS LYS VAL GLY ASP PHE PHE ALA HIS GLY THR LEU SEQRES 29 A 388 HIS SER MET ALA ASP LYS LEU THR ILE GLY TRP HIS PRO SEQRES 30 A 388 GLU PHE ASP LYS LYS LEU GLY ASP PRO ASP ALA SEQRES 1 B 388 MET LYS ASP ASN SER THR SER ALA VAL SER SER TRP LEU SEQRES 2 B 388 GLY TYR LYS ILE GLN GLU TYR ARG LEU THR GLN ARG LEU SEQRES 3 B 388 LEU GLU ALA ASN ASN SER SER CYS ILE GLY PHE GLU ILE SEQRES 4 B 388 LEU ASP ASP LEU GLU GLU HIS THR GLY SER THR SER THR SEQRES 5 B 388 PHE GLU GLN ASP ALA ILE SER THR THR GLY ARG ASN ILE SEQRES 6 B 388 VAL SER ASN HIS SER LYS ASP LEU TRP LYS THR LEU SER SEQRES 7 B 388 ASN TRP MET ASP LEU ILE ASP SER GLY GLU ILE ASP VAL SEQRES 8 B 388 ASP ASN THR ILE PHE LEU LEU PHE THR ASN LYS ARG CYS SEQRES 9 B 388 HIS SER GLU VAL LEU GLN LEU LEU SER THR SER GLN ALA SEQRES 10 B 388 THR GLU GLU ALA SER LYS ALA PHE ASP GLU ILE LEU LYS SEQRES 11 B 388 ILE VAL SER HIS PRO SER PRO SER ILE ALA ASN TYR LEU SEQRES 12 B 388 ASN ASN PHE SER LYS SER LYS THR ASP ALA CYS ARG LEU SEQRES 13 B 388 ILE SER LYS PHE THR TYR ILE TYR GLY SER GLY SER ALA SEQRES 14 B 388 PRO HIS ASP LEU ARG GLU SER TYR LYS LEU HIS ARG LEU SEQRES 15 B 388 GLY ALA LEU GLU GLU HIS LEU ASP GLU ILE MET TYR GLU SEQRES 16 B 388 ILE LEU GLY TRP VAL SER ASP VAL LEU THR LEU ALA ALA SEQRES 17 B 388 GLU LYS ARG GLN PRO THR ILE VAL ARG ALA LYS ASP PHE SEQRES 18 B 388 GLY ALA ARG LEU GLY GLU ILE GLU SER LYS TYR ARG GLN SEQRES 19 B 388 LYS THR ILE LEU ASN TYR PHE CYS ASN ARG SER SER GLU SEQRES 20 B 388 SER GLU ASP VAL GLN ASN THR ILE LYS ASP ALA PRO ASN SEQRES 21 B 388 TYR ILE LYS GLN LEU ASN LEU ILE ASN VAL ASP ASP SER SEQRES 22 B 388 GLU LEU GLU GLU ALA ALA ILE ALA ASN LEU GLU THR LYS SEQRES 23 B 388 ASP ALA VAL VAL GLU TRP THR LEU ASN GLY ASP VAL GLN SEQRES 24 B 388 ASP TYR SER TYR ARG TYR TYR GLN ARG GLU LEU ARG ARG SEQRES 25 B 388 CYS TRP GLY ILE GLN LYS GLN LYS ILE HIS LEU ASP PHE SEQRES 26 B 388 ASN GLY ARG PRO GLU THR GLU VAL GLY GLN ARG LEU TYR SEQRES 27 B 388 ILE GLU CYS LEU ASN ASN VAL THR ARG TYR TYR LEU GLU SEQRES 28 B 388 ASN LYS LYS VAL GLY ASP PHE PHE ALA HIS GLY THR LEU SEQRES 29 B 388 HIS SER MET ALA ASP LYS LEU THR ILE GLY TRP HIS PRO SEQRES 30 B 388 GLU PHE ASP LYS LYS LEU GLY ASP PRO ASP ALA SEQRES 1 C 388 MET LYS ASP ASN SER THR SER ALA VAL SER SER TRP LEU SEQRES 2 C 388 GLY TYR LYS ILE GLN GLU TYR ARG LEU THR GLN ARG LEU SEQRES 3 C 388 LEU GLU ALA ASN ASN SER SER CYS ILE GLY PHE GLU ILE SEQRES 4 C 388 LEU ASP ASP LEU GLU GLU HIS THR GLY SER THR SER THR SEQRES 5 C 388 PHE GLU GLN ASP ALA ILE SER THR THR GLY ARG ASN ILE SEQRES 6 C 388 VAL SER ASN HIS SER LYS ASP LEU TRP LYS THR LEU SER SEQRES 7 C 388 ASN TRP MET ASP LEU ILE ASP SER GLY GLU ILE ASP VAL SEQRES 8 C 388 ASP ASN THR ILE PHE LEU LEU PHE THR ASN LYS ARG CYS SEQRES 9 C 388 HIS SER GLU VAL LEU GLN LEU LEU SER THR SER GLN ALA SEQRES 10 C 388 THR GLU GLU ALA SER LYS ALA PHE ASP GLU ILE LEU LYS SEQRES 11 C 388 ILE VAL SER HIS PRO SER PRO SER ILE ALA ASN TYR LEU SEQRES 12 C 388 ASN ASN PHE SER LYS SER LYS THR ASP ALA CYS ARG LEU SEQRES 13 C 388 ILE SER LYS PHE THR TYR ILE TYR GLY SER GLY SER ALA SEQRES 14 C 388 PRO HIS ASP LEU ARG GLU SER TYR LYS LEU HIS ARG LEU SEQRES 15 C 388 GLY ALA LEU GLU GLU HIS LEU ASP GLU ILE MET TYR GLU SEQRES 16 C 388 ILE LEU GLY TRP VAL SER ASP VAL LEU THR LEU ALA ALA SEQRES 17 C 388 GLU LYS ARG GLN PRO THR ILE VAL ARG ALA LYS ASP PHE SEQRES 18 C 388 GLY ALA ARG LEU GLY GLU ILE GLU SER LYS TYR ARG GLN SEQRES 19 C 388 LYS THR ILE LEU ASN TYR PHE CYS ASN ARG SER SER GLU SEQRES 20 C 388 SER GLU ASP VAL GLN ASN THR ILE LYS ASP ALA PRO ASN SEQRES 21 C 388 TYR ILE LYS GLN LEU ASN LEU ILE ASN VAL ASP ASP SER SEQRES 22 C 388 GLU LEU GLU GLU ALA ALA ILE ALA ASN LEU GLU THR LYS SEQRES 23 C 388 ASP ALA VAL VAL GLU TRP THR LEU ASN GLY ASP VAL GLN SEQRES 24 C 388 ASP TYR SER TYR ARG TYR TYR GLN ARG GLU LEU ARG ARG SEQRES 25 C 388 CYS TRP GLY ILE GLN LYS GLN LYS ILE HIS LEU ASP PHE SEQRES 26 C 388 ASN GLY ARG PRO GLU THR GLU VAL GLY GLN ARG LEU TYR SEQRES 27 C 388 ILE GLU CYS LEU ASN ASN VAL THR ARG TYR TYR LEU GLU SEQRES 28 C 388 ASN LYS LYS VAL GLY ASP PHE PHE ALA HIS GLY THR LEU SEQRES 29 C 388 HIS SER MET ALA ASP LYS LEU THR ILE GLY TRP HIS PRO SEQRES 30 C 388 GLU PHE ASP LYS LYS LEU GLY ASP PRO ASP ALA SEQRES 1 D 388 MET LYS ASP ASN SER THR SER ALA VAL SER SER TRP LEU SEQRES 2 D 388 GLY TYR LYS ILE GLN GLU TYR ARG LEU THR GLN ARG LEU SEQRES 3 D 388 LEU GLU ALA ASN ASN SER SER CYS ILE GLY PHE GLU ILE SEQRES 4 D 388 LEU ASP ASP LEU GLU GLU HIS THR GLY SER THR SER THR SEQRES 5 D 388 PHE GLU GLN ASP ALA ILE SER THR THR GLY ARG ASN ILE SEQRES 6 D 388 VAL SER ASN HIS SER LYS ASP LEU TRP LYS THR LEU SER SEQRES 7 D 388 ASN TRP MET ASP LEU ILE ASP SER GLY GLU ILE ASP VAL SEQRES 8 D 388 ASP ASN THR ILE PHE LEU LEU PHE THR ASN LYS ARG CYS SEQRES 9 D 388 HIS SER GLU VAL LEU GLN LEU LEU SER THR SER GLN ALA SEQRES 10 D 388 THR GLU GLU ALA SER LYS ALA PHE ASP GLU ILE LEU LYS SEQRES 11 D 388 ILE VAL SER HIS PRO SER PRO SER ILE ALA ASN TYR LEU SEQRES 12 D 388 ASN ASN PHE SER LYS SER LYS THR ASP ALA CYS ARG LEU SEQRES 13 D 388 ILE SER LYS PHE THR TYR ILE TYR GLY SER GLY SER ALA SEQRES 14 D 388 PRO HIS ASP LEU ARG GLU SER TYR LYS LEU HIS ARG LEU SEQRES 15 D 388 GLY ALA LEU GLU GLU HIS LEU ASP GLU ILE MET TYR GLU SEQRES 16 D 388 ILE LEU GLY TRP VAL SER ASP VAL LEU THR LEU ALA ALA SEQRES 17 D 388 GLU LYS ARG GLN PRO THR ILE VAL ARG ALA LYS ASP PHE SEQRES 18 D 388 GLY ALA ARG LEU GLY GLU ILE GLU SER LYS TYR ARG GLN SEQRES 19 D 388 LYS THR ILE LEU ASN TYR PHE CYS ASN ARG SER SER GLU SEQRES 20 D 388 SER GLU ASP VAL GLN ASN THR ILE LYS ASP ALA PRO ASN SEQRES 21 D 388 TYR ILE LYS GLN LEU ASN LEU ILE ASN VAL ASP ASP SER SEQRES 22 D 388 GLU LEU GLU GLU ALA ALA ILE ALA ASN LEU GLU THR LYS SEQRES 23 D 388 ASP ALA VAL VAL GLU TRP THR LEU ASN GLY ASP VAL GLN SEQRES 24 D 388 ASP TYR SER TYR ARG TYR TYR GLN ARG GLU LEU ARG ARG SEQRES 25 D 388 CYS TRP GLY ILE GLN LYS GLN LYS ILE HIS LEU ASP PHE SEQRES 26 D 388 ASN GLY ARG PRO GLU THR GLU VAL GLY GLN ARG LEU TYR SEQRES 27 D 388 ILE GLU CYS LEU ASN ASN VAL THR ARG TYR TYR LEU GLU SEQRES 28 D 388 ASN LYS LYS VAL GLY ASP PHE PHE ALA HIS GLY THR LEU SEQRES 29 D 388 HIS SER MET ALA ASP LYS LEU THR ILE GLY TRP HIS PRO SEQRES 30 D 388 GLU PHE ASP LYS LYS LEU GLY ASP PRO ASP ALA HELIX 1 AA1 GLU A 19 GLU A 28 1 10 HELIX 2 AA2 SER A 70 SER A 86 1 17 HELIX 3 AA3 SER A 106 SER A 115 1 10 HELIX 4 AA4 ALA A 140 SER A 149 1 10 HELIX 5 AA5 ARG A 155 PHE A 160 1 6 HELIX 6 AA6 SER A 168 ARG A 181 1 14 HELIX 7 AA7 HIS A 188 LYS A 210 1 23 HELIX 8 AA8 ARG A 217 ARG A 233 1 17 HELIX 9 AA9 SER A 248 ALA A 258 1 11 HELIX 10 AB1 TYR A 261 ASN A 266 1 6 HELIX 11 AB2 SER A 273 ASN A 295 1 23 HELIX 12 AB3 GLN A 299 PHE A 325 1 27 HELIX 13 AB4 PRO A 329 ASN A 343 1 15 HELIX 14 AB5 ASN A 344 ARG A 347 5 4 HELIX 15 AB6 GLY A 356 LYS A 370 1 15 HELIX 16 AB7 GLU A 378 LEU A 383 1 6 HELIX 17 AB8 GLU B 19 GLU B 28 1 10 HELIX 18 AB9 ASP B 82 GLY B 87 1 6 HELIX 19 AC1 GLU B 107 SER B 113 1 7 HELIX 20 AC2 ALA B 117 LYS B 123 1 7 HELIX 21 AC3 LYS B 123 LEU B 129 1 7 HELIX 22 AC4 ASN B 144 LYS B 150 1 7 HELIX 23 AC5 SER B 168 ARG B 181 1 14 HELIX 24 AC6 MET B 193 LEU B 206 1 14 HELIX 25 AC7 ALA B 218 GLN B 234 1 17 HELIX 26 AC8 VAL B 251 ASP B 257 1 7 HELIX 27 AC9 PRO B 259 ILE B 268 1 10 HELIX 28 AD1 SER B 273 ASN B 295 1 23 HELIX 29 AD2 TYR B 303 ARG B 308 1 6 HELIX 30 AD3 GLU B 309 PHE B 325 1 17 HELIX 31 AD4 PRO B 329 ASN B 343 1 15 HELIX 32 AD5 GLY B 356 MET B 367 1 12 HELIX 33 AD6 LYS C 16 ALA C 29 1 14 HELIX 34 AD7 SER C 70 GLY C 87 1 18 HELIX 35 AD8 LEU C 109 THR C 114 1 6 HELIX 36 AD9 ALA C 117 SER C 133 1 17 HELIX 37 AE1 ALA C 140 ASN C 145 1 6 HELIX 38 AE2 SER C 149 CYS C 154 1 6 HELIX 39 AE3 CYS C 154 LYS C 159 1 6 HELIX 40 AE4 ALA C 169 ARG C 181 1 13 HELIX 41 AE5 HIS C 188 ALA C 207 1 20 HELIX 42 AE6 ALA C 218 TYR C 232 1 15 HELIX 43 AE7 SER C 248 ALA C 258 1 11 HELIX 44 AE8 PRO C 259 ILE C 268 1 10 HELIX 45 AE9 ASP C 271 ASP C 287 1 17 HELIX 46 AF1 SER C 302 PHE C 325 1 24 HELIX 47 AF2 PRO C 329 VAL C 345 1 17 HELIX 48 AF3 THR C 346 TYR C 348 5 3 HELIX 49 AF4 GLY C 356 LYS C 370 1 15 HELIX 50 AF5 GLU C 378 LEU C 383 1 6 HELIX 51 AF6 ILE D 17 LEU D 27 1 11 HELIX 52 AF7 LYS D 71 SER D 86 1 16 HELIX 53 AF8 VAL D 108 SER D 115 1 8 HELIX 54 AF9 ALA D 117 LYS D 130 1 14 HELIX 55 AG1 SER D 136 SER D 147 1 12 HELIX 56 AG2 LYS D 150 LYS D 159 1 10 HELIX 57 AG3 SER D 168 ARG D 181 1 14 HELIX 58 AG4 HIS D 188 LYS D 210 1 23 HELIX 59 AG5 ALA D 218 SER D 230 1 13 HELIX 60 AG6 SER D 248 ALA D 258 1 11 HELIX 61 AG7 PRO D 259 ILE D 268 1 10 HELIX 62 AG8 ASP D 271 LEU D 294 1 24 HELIX 63 AG9 GLN D 299 TYR D 301 5 3 HELIX 64 AH1 SER D 302 PHE D 325 1 24 HELIX 65 AH2 PRO D 329 VAL D 345 1 17 HELIX 66 AH3 THR D 346 TYR D 348 5 3 HELIX 67 AH4 GLY D 356 LYS D 370 1 15 HELIX 68 AH5 GLU D 378 LEU D 383 1 6 SHEET 1 AA1 3 CYS A 34 GLY A 36 0 SHEET 2 AA1 3 THR A 94 PHE A 99 1 O ILE A 95 N GLY A 36 SHEET 3 AA1 3 THR A 161 ILE A 163 1 O ILE A 163 N LEU A 98 SHEET 1 AA2 2 TYR A 349 LEU A 350 0 SHEET 2 AA2 2 LYS A 353 LYS A 354 -1 O LYS A 353 N LEU A 350 SHEET 1 AA3 3 THR B 94 LEU B 97 0 SHEET 2 AA3 3 ILE B 35 GLU B 38 1 N PHE B 37 O ILE B 95 SHEET 3 AA3 3 VAL B 216 ARG B 217 -1 O VAL B 216 N GLY B 36 SHEET 1 AA4 4 ILE C 163 TYR C 164 0 SHEET 2 AA4 4 THR C 94 THR C 100 1 N THR C 100 O ILE C 163 SHEET 3 AA4 4 CYS C 34 LEU C 40 1 N LEU C 40 O PHE C 99 SHEET 4 AA4 4 ILE C 215 VAL C 216 -1 O VAL C 216 N ILE C 35 SHEET 1 AA5 4 PHE D 160 TYR D 164 0 SHEET 2 AA5 4 THR D 94 THR D 100 1 N LEU D 98 O ILE D 163 SHEET 3 AA5 4 SER D 33 CYS D 34 1 N SER D 33 O ILE D 95 SHEET 4 AA5 4 VAL D 216 ARG D 217 -1 O VAL D 216 N CYS D 34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 2873 LEU A 383 TER 5733 LEU B 383 TER 8639 LEU C 383 TER 11522 GLY D 384 MASTER 429 0 0 68 16 0 0 611518 4 0 120 END