HEADER DNA BINDING PROTEIN/DNA/RNA 01-APR-25 9NZO TITLE STRUCTURE OF AL3CAS12F STATE I COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAS12F EFFECTOR; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TARGET STRAND DNA; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: NON-TARGET STRAND DNA; COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: SGRNA; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 13 ORGANISM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 18 ORGANISM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CRISPR-CAS12, ENDONUCLEASE, DIMERIC, EFFECTOR, SGRNA, DNA BINDING KEYWDS 2 PROTEIN, DNA BINDING PROTEIN-DNA-RNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR R.FREGOSO OCAMPO,K.GUAN,D.W.TAYLOR REVDAT 1 08-APR-26 9NZO 0 JRNL AUTH R.FREGOSO OCAMPO,K.GUAN,D.W.TAYLOR JRNL TITL METAGENCAS12F INTERMEDIATE STRUCTURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, PHENIX, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200 REMARK 3 NUMBER OF PARTICLES : 141537 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9NZO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-25. REMARK 100 THE DEPOSITION ID IS D_1000294429. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CAS12F CLEAVAGE INTERMEDIATE IN REMARK 245 STATE I REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, E, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 GLU B 4 REMARK 465 TYR B 5 REMARK 465 THR B 6 REMARK 465 CYS B 7 REMARK 465 LYS B 257 REMARK 465 GLU B 258 REMARK 465 ASN B 259 REMARK 465 HIS B 260 REMARK 465 ASN B 261 REMARK 465 LEU B 262 REMARK 465 ASN B 263 REMARK 465 PRO B 264 REMARK 465 ASP B 265 REMARK 465 ARG B 266 REMARK 465 ILE B 267 REMARK 465 VAL B 268 REMARK 465 GLY B 269 REMARK 465 VAL B 270 REMARK 465 ASP B 271 REMARK 465 LEU B 272 REMARK 465 GLY B 273 REMARK 465 ILE B 274 REMARK 465 ASN B 275 REMARK 465 ILE B 276 REMARK 465 PRO B 277 REMARK 465 LEU B 278 REMARK 465 TYR B 279 REMARK 465 ALA B 280 REMARK 465 ALA B 281 REMARK 465 LEU B 282 REMARK 465 ASN B 283 REMARK 465 ASP B 284 REMARK 465 ASN B 285 REMARK 465 ASP B 286 REMARK 465 TYR B 287 REMARK 465 GLY B 288 REMARK 465 GLY B 289 REMARK 465 MET B 290 REMARK 465 GLY B 291 REMARK 465 ILE B 292 REMARK 465 GLY B 293 REMARK 465 SER B 294 REMARK 465 ARG B 295 REMARK 465 GLU B 296 REMARK 465 GLN B 297 REMARK 465 PHE B 298 REMARK 465 LEU B 299 REMARK 465 ASN B 300 REMARK 465 MET B 301 REMARK 465 ARG B 302 REMARK 465 MET B 303 REMARK 465 ARG B 304 REMARK 465 MET B 305 REMARK 465 ASP B 306 REMARK 465 ALA B 307 REMARK 465 LYS B 308 REMARK 465 LYS B 309 REMARK 465 ARG B 310 REMARK 465 GLU B 311 REMARK 465 LEU B 312 REMARK 465 GLN B 313 REMARK 465 ARG B 314 REMARK 465 ASN B 315 REMARK 465 LEU B 316 REMARK 465 ARG B 317 REMARK 465 GLN B 318 REMARK 465 SER B 319 REMARK 465 THR B 320 REMARK 465 ASN B 321 REMARK 465 GLY B 322 REMARK 465 GLY B 323 REMARK 465 HIS B 324 REMARK 465 GLY B 325 REMARK 465 ARG B 326 REMARK 465 LYS B 327 REMARK 465 GLN B 328 REMARK 465 LYS B 329 REMARK 465 LEU B 330 REMARK 465 GLN B 331 REMARK 465 ALA B 332 REMARK 465 LEU B 333 REMARK 465 GLU B 334 REMARK 465 ARG B 335 REMARK 465 PHE B 336 REMARK 465 GLU B 337 REMARK 465 GLY B 338 REMARK 465 LYS B 339 REMARK 465 GLU B 340 REMARK 465 ARG B 341 REMARK 465 ASN B 342 REMARK 465 TRP B 343 REMARK 465 VAL B 344 REMARK 465 HIS B 345 REMARK 465 LEU B 346 REMARK 465 GLN B 347 REMARK 465 ASN B 348 REMARK 465 HIS B 349 REMARK 465 ILE B 350 REMARK 465 PHE B 351 REMARK 465 SER B 352 REMARK 465 LYS B 353 REMARK 465 SER B 354 REMARK 465 ILE B 355 REMARK 465 ILE B 356 REMARK 465 GLU B 357 REMARK 465 TYR B 358 REMARK 465 ALA B 359 REMARK 465 VAL B 360 REMARK 465 LYS B 361 REMARK 465 ASN B 362 REMARK 465 ASN B 363 REMARK 465 ALA B 364 REMARK 465 GLY B 365 REMARK 465 ALA B 366 REMARK 465 ILE B 367 REMARK 465 GLN B 368 REMARK 465 MET B 369 REMARK 465 GLU B 370 REMARK 465 ARG B 371 REMARK 465 LEU B 372 REMARK 465 THR B 373 REMARK 465 GLY B 374 REMARK 465 PHE B 375 REMARK 465 GLY B 376 REMARK 465 ARG B 377 REMARK 465 ASP B 378 REMARK 465 LYS B 379 REMARK 465 ASN B 380 REMARK 465 ASP B 381 REMARK 465 GLU B 382 REMARK 465 VAL B 383 REMARK 465 ASP B 384 REMARK 465 SER B 385 REMARK 465 ASN B 386 REMARK 465 PHE B 387 REMARK 465 LYS B 388 REMARK 465 PHE B 389 REMARK 465 ILE B 390 REMARK 465 LEU B 391 REMARK 465 ARG B 392 REMARK 465 TYR B 393 REMARK 465 TRP B 394 REMARK 465 SER B 395 REMARK 465 PHE B 396 REMARK 465 PHE B 397 REMARK 465 GLU B 398 REMARK 465 LEU B 399 REMARK 465 GLN B 400 REMARK 465 THR B 401 REMARK 465 MET B 402 REMARK 465 ILE B 403 REMARK 465 GLU B 404 REMARK 465 TYR B 405 REMARK 465 LYS B 406 REMARK 465 ALA B 407 REMARK 465 ASN B 408 REMARK 465 ALA B 409 REMARK 465 ALA B 410 REMARK 465 GLY B 411 REMARK 465 ILE B 412 REMARK 465 GLU B 413 REMARK 465 VAL B 414 REMARK 465 ARG B 415 REMARK 465 TYR B 416 REMARK 465 VAL B 417 REMARK 465 ASP B 418 REMARK 465 PRO B 419 REMARK 465 TYR B 420 REMARK 465 HIS B 421 REMARK 465 THR B 422 REMARK 465 SER B 423 REMARK 465 GLN B 424 REMARK 465 THR B 425 REMARK 465 CYS B 426 REMARK 465 SER B 427 REMARK 465 PHE B 428 REMARK 465 CYS B 429 REMARK 465 GLY B 430 REMARK 465 HIS B 431 REMARK 465 TYR B 432 REMARK 465 GLU B 433 REMARK 465 LYS B 434 REMARK 465 GLY B 435 REMARK 465 GLN B 436 REMARK 465 ARG B 437 REMARK 465 LEU B 438 REMARK 465 ASN B 439 REMARK 465 GLN B 440 REMARK 465 SER B 441 REMARK 465 THR B 442 REMARK 465 PHE B 443 REMARK 465 VAL B 444 REMARK 465 CYS B 445 REMARK 465 LYS B 446 REMARK 465 ASN B 447 REMARK 465 PRO B 448 REMARK 465 ASP B 449 REMARK 465 CYS B 450 REMARK 465 GLU B 451 REMARK 465 LYS B 452 REMARK 465 GLY B 453 REMARK 465 LYS B 454 REMARK 465 GLY B 455 REMARK 465 LYS B 456 REMARK 465 LYS B 457 REMARK 465 LEU B 458 REMARK 465 SER B 459 REMARK 465 ASP B 460 REMARK 465 GLY B 461 REMARK 465 THR B 462 REMARK 465 TYR B 463 REMARK 465 GLN B 464 REMARK 465 GLY B 465 REMARK 465 ILE B 466 REMARK 465 ASN B 467 REMARK 465 ALA B 468 REMARK 465 ASP B 469 REMARK 465 TRP B 470 REMARK 465 ASN B 471 REMARK 465 ALA B 472 REMARK 465 ALA B 473 REMARK 465 ARG B 474 REMARK 465 ASN B 475 REMARK 465 ILE B 476 REMARK 465 ALA B 477 REMARK 465 LEU B 478 REMARK 465 SER B 479 REMARK 465 ASP B 480 REMARK 465 LYS B 481 REMARK 465 ILE B 482 REMARK 465 VAL B 483 REMARK 465 ASP B 484 REMARK 465 ARG B 485 REMARK 465 LYS B 486 REMARK 465 LYS B 487 REMARK 465 LYS B 488 REMARK 465 GLY B 489 REMARK 465 GLY B 490 REMARK 465 SER B 491 REMARK 465 GLY B 492 REMARK 465 GLY B 493 REMARK 465 SER B 494 REMARK 465 GLY B 495 REMARK 465 GLY B 496 REMARK 465 SER B 497 REMARK 465 GLY B 498 REMARK 465 PRO B 499 REMARK 465 PRO B 500 REMARK 465 LYS B 501 REMARK 465 LYS B 502 REMARK 465 LYS B 503 REMARK 465 ARG B 504 REMARK 465 LYS B 505 REMARK 465 VAL B 506 REMARK 465 DC D -12 REMARK 465 DT D -11 REMARK 465 DG D -10 REMARK 465 DA D -9 REMARK 465 DT D -8 REMARK 465 DC D -7 REMARK 465 DC D -6 REMARK 465 DT D -5 REMARK 465 DG D -4 REMARK 465 DG D -3 REMARK 465 DT D -2 REMARK 465 DG D -1 REMARK 465 DC D 0 REMARK 465 DA D 34 REMARK 465 DG D 35 REMARK 465 DT D 36 REMARK 465 DT D 37 REMARK 465 DA E -3 REMARK 465 DA E -2 REMARK 465 DC E -1 REMARK 465 DT E 0 REMARK 465 DG E 18 REMARK 465 DT E 19 REMARK 465 DG E 20 REMARK 465 DT E 21 REMARK 465 DA E 22 REMARK 465 DA E 23 REMARK 465 DG E 24 REMARK 465 DG E 25 REMARK 465 DA E 26 REMARK 465 DA E 27 REMARK 465 DG E 28 REMARK 465 DC E 29 REMARK 465 DT E 30 REMARK 465 DG E 31 REMARK 465 DC E 32 REMARK 465 DA E 33 REMARK 465 DG E 34 REMARK 465 DC E 35 REMARK 465 DA E 36 REMARK 465 DC E 37 REMARK 465 DC E 38 REMARK 465 DA E 39 REMARK 465 DG E 40 REMARK 465 DG E 41 REMARK 465 DA E 42 REMARK 465 DT E 43 REMARK 465 DC E 44 REMARK 465 DA E 45 REMARK 465 DG E 46 REMARK 465 C C 1 REMARK 465 A C 2 REMARK 465 A C 3 REMARK 465 A C 4 REMARK 465 C C 5 REMARK 465 C C 6 REMARK 465 C C 7 REMARK 465 C C 8 REMARK 465 U C 9 REMARK 465 U C 10 REMARK 465 C C 11 REMARK 465 G C 12 REMARK 465 G C 13 REMARK 465 G C 14 REMARK 465 A C 55 REMARK 465 A C 56 REMARK 465 A C 57 REMARK 465 A C 58 REMARK 465 A C 59 REMARK 465 A C 60 REMARK 465 A C 61 REMARK 465 C C 62 REMARK 465 U C 63 REMARK 465 G C 64 REMARK 465 A C 84 REMARK 465 G C 85 REMARK 465 U C 86 REMARK 465 C C 87 REMARK 465 U C 88 REMARK 465 G C 114 REMARK 465 A C 115 REMARK 465 A C 116 REMARK 465 A C 117 REMARK 465 U C 118 REMARK 465 C C 119 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 TYR A 5 REMARK 465 ARG A 317 REMARK 465 GLN A 318 REMARK 465 SER A 319 REMARK 465 THR A 320 REMARK 465 ASN A 321 REMARK 465 GLY A 322 REMARK 465 GLY A 323 REMARK 465 HIS A 324 REMARK 465 GLY A 325 REMARK 465 ARG A 326 REMARK 465 LYS A 327 REMARK 465 GLN A 328 REMARK 465 LYS A 329 REMARK 465 LEU A 372 REMARK 465 THR A 373 REMARK 465 GLY A 374 REMARK 465 PHE A 375 REMARK 465 GLY A 376 REMARK 465 ARG A 377 REMARK 465 ASP A 378 REMARK 465 LYS A 379 REMARK 465 ASN A 380 REMARK 465 ASP A 381 REMARK 465 GLU A 382 REMARK 465 VAL A 383 REMARK 465 ASP A 384 REMARK 465 SER A 385 REMARK 465 ASN A 386 REMARK 465 SER A 479 REMARK 465 ASP A 480 REMARK 465 LYS A 481 REMARK 465 ILE A 482 REMARK 465 VAL A 483 REMARK 465 ASP A 484 REMARK 465 ARG A 485 REMARK 465 LYS A 486 REMARK 465 LYS A 487 REMARK 465 LYS A 488 REMARK 465 GLY A 489 REMARK 465 GLY A 490 REMARK 465 SER A 491 REMARK 465 GLY A 492 REMARK 465 GLY A 493 REMARK 465 SER A 494 REMARK 465 GLY A 495 REMARK 465 GLY A 496 REMARK 465 SER A 497 REMARK 465 GLY A 498 REMARK 465 PRO A 499 REMARK 465 PRO A 500 REMARK 465 LYS A 501 REMARK 465 LYS A 502 REMARK 465 LYS A 503 REMARK 465 ARG A 504 REMARK 465 LYS A 505 REMARK 465 VAL A 506 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 18 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 21 CG CD OE1 OE2 REMARK 470 GLU B 23 CG CD OE1 OE2 REMARK 470 LYS B 92 CG CD CE NZ REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 ARG B 186 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 195 CG OD1 OD2 REMARK 470 ASP B 196 CG OD1 OD2 REMARK 470 GLU B 208 CG CD OE1 OE2 REMARK 470 ARG B 215 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 217 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 222 CG CD OE1 OE2 REMARK 470 GLU B 225 CG CD OE1 OE2 REMARK 470 ARG B 226 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 243 CG CD CE NZ REMARK 470 ARG B 245 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 246 CG CD CE NZ REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 PRO B 256 CG CD REMARK 470 DT D 1 P OP1 OP2 O5' C5' REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 LEU A 77 CG CD1 CD2 REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 ARG A 83 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 GLN A 93 CG CD OE1 NE2 REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 GLU A 188 CG CD OE1 OE2 REMARK 470 ASP A 195 CG OD1 OD2 REMARK 470 ASP A 233 CG OD1 OD2 REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 ASN A 244 CG OD1 ND2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 ASN A 259 CG OD1 ND2 REMARK 470 ASN A 261 CG OD1 ND2 REMARK 470 ASN A 263 CG OD1 ND2 REMARK 470 ASP A 271 CG OD1 OD2 REMARK 470 LEU A 272 CG CD1 CD2 REMARK 470 ASN A 275 CG OD1 ND2 REMARK 470 ILE A 276 CG1 CG2 CD1 REMARK 470 TYR A 279 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 286 CG OD1 OD2 REMARK 470 TYR A 287 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 295 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 PHE A 298 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 300 CG OD1 ND2 REMARK 470 MET A 303 CG SD CE REMARK 470 MET A 305 CG SD CE REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 ARG A 310 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 ARG A 314 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 PHE A 336 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 342 CG OD1 ND2 REMARK 470 LYS A 361 CG CD CE NZ REMARK 470 GLU A 370 CG CD OE1 OE2 REMARK 470 LYS A 388 CG CD CE NZ REMARK 470 THR A 422 OG1 CG2 REMARK 470 GLU A 433 CG CD OE1 OE2 REMARK 470 LYS A 434 CG CD CE NZ REMARK 470 GLN A 440 CG CD OE1 NE2 REMARK 470 LYS A 446 CG CD CE NZ REMARK 470 TRP A 470 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 470 CZ3 CH2 REMARK 470 ASN A 471 CG OD1 ND2 REMARK 470 ASN A 475 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 210 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 DG D 2 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG D 5 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG E 15 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 ASP A 216 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 284 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 114 50.91 -95.03 REMARK 500 GLN B 185 47.13 38.52 REMARK 500 TYR A 22 -169.03 -126.44 REMARK 500 TYR A 287 55.04 -93.20 REMARK 500 GLU A 296 -2.79 75.13 REMARK 500 ASN A 439 -158.64 -158.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-49954 RELATED DB: EMDB REMARK 900 STRUCTURE OF METAGENCAS12F STATE I DBREF 9NZO B 1 506 PDB 9NZO 9NZO 1 506 DBREF 9NZO D -12 37 PDB 9NZO 9NZO -12 37 DBREF 9NZO E -3 46 PDB 9NZO 9NZO -3 46 DBREF 9NZO C 1 154 PDB 9NZO 9NZO 1 154 DBREF 9NZO A 1 506 PDB 9NZO 9NZO 1 506 SEQRES 1 B 506 MET ALA THR GLU TYR THR CYS ILE THR ARG LYS ILE GLU SEQRES 2 B 506 VAL HIS LEU HIS ARG HIS GLY GLU TYR GLU GLU ALA LYS SEQRES 3 B 506 GLN ARG LEU ILE ASP ASP TYR ARG VAL TRP ASP THR ILE SEQRES 4 B 506 ASN ASP ASN LEU TYR LYS ALA ALA ASN ARG ILE VAL SER SEQRES 5 B 506 HIS CYS PHE PHE ASN ASP ALA TYR GLU TYR ARG LEU LYS SEQRES 6 B 506 ILE HIS SER PRO ARG PHE GLN GLU ILE GLU LYS LEU LEU SEQRES 7 B 506 LYS TYR PRO LYS ARG ASN LYS LEU THR ASP GLU ASP ILE SEQRES 8 B 506 LYS GLN LEU LYS ALA GLU ARG LYS GLN LEU PHE ALA ASP SEQRES 9 B 506 PHE LYS LYS GLN ARG HIS THR PHE LEU ARG GLY GLY VAL SEQRES 10 B 506 ALA GLU GLY ALA ASN PRO GLU GLN ASN SER THR TYR LYS SEQRES 11 B 506 VAL ILE SER ASN GLU PHE LEU GLU VAL ILE PRO SER GLU SEQRES 12 B 506 ILE LEU THR ASN LEU ASN GLN ASN ILE SER SER THR TYR SEQRES 13 B 506 LYS ASN TYR SER LEU ASP VAL GLU ARG GLY ILE ARG THR SEQRES 14 B 506 ILE PRO ASN TYR LYS ARG GLY ILE PRO VAL PRO PHE SER SEQRES 15 B 506 ILE LYS GLN ARG GLY GLU LEU MET LEU LYS SER ARG ASP SEQRES 16 B 506 ASP GLY SER ILE TYR VAL ARG PHE PRO LEU GLY LEU GLU SEQRES 17 B 506 TRP ASP LEU SER PHE GLY ARG ASP ARG SER ASN ASN ARG SEQRES 18 B 506 GLU ILE VAL GLU ARG VAL LEU SER GLY GLN TYR ASP VAL SEQRES 19 B 506 GLY ASN SER SER ILE GLN GLU SER LYS ASN ARG LYS ARG SEQRES 20 B 506 PHE LEU LEU LEU VAL VAL LYS ILE PRO LYS GLU ASN HIS SEQRES 21 B 506 ASN LEU ASN PRO ASP ARG ILE VAL GLY VAL ASP LEU GLY SEQRES 22 B 506 ILE ASN ILE PRO LEU TYR ALA ALA LEU ASN ASP ASN ASP SEQRES 23 B 506 TYR GLY GLY MET GLY ILE GLY SER ARG GLU GLN PHE LEU SEQRES 24 B 506 ASN MET ARG MET ARG MET ASP ALA LYS LYS ARG GLU LEU SEQRES 25 B 506 GLN ARG ASN LEU ARG GLN SER THR ASN GLY GLY HIS GLY SEQRES 26 B 506 ARG LYS GLN LYS LEU GLN ALA LEU GLU ARG PHE GLU GLY SEQRES 27 B 506 LYS GLU ARG ASN TRP VAL HIS LEU GLN ASN HIS ILE PHE SEQRES 28 B 506 SER LYS SER ILE ILE GLU TYR ALA VAL LYS ASN ASN ALA SEQRES 29 B 506 GLY ALA ILE GLN MET GLU ARG LEU THR GLY PHE GLY ARG SEQRES 30 B 506 ASP LYS ASN ASP GLU VAL ASP SER ASN PHE LYS PHE ILE SEQRES 31 B 506 LEU ARG TYR TRP SER PHE PHE GLU LEU GLN THR MET ILE SEQRES 32 B 506 GLU TYR LYS ALA ASN ALA ALA GLY ILE GLU VAL ARG TYR SEQRES 33 B 506 VAL ASP PRO TYR HIS THR SER GLN THR CYS SER PHE CYS SEQRES 34 B 506 GLY HIS TYR GLU LYS GLY GLN ARG LEU ASN GLN SER THR SEQRES 35 B 506 PHE VAL CYS LYS ASN PRO ASP CYS GLU LYS GLY LYS GLY SEQRES 36 B 506 LYS LYS LEU SER ASP GLY THR TYR GLN GLY ILE ASN ALA SEQRES 37 B 506 ASP TRP ASN ALA ALA ARG ASN ILE ALA LEU SER ASP LYS SEQRES 38 B 506 ILE VAL ASP ARG LYS LYS LYS GLY GLY SER GLY GLY SER SEQRES 39 B 506 GLY GLY SER GLY PRO PRO LYS LYS LYS ARG LYS VAL SEQRES 1 D 50 DC DT DG DA DT DC DC DT DG DG DT DG DC SEQRES 2 D 50 DT DG DC DA DG DC DT DT DC DC DT DT DA SEQRES 3 D 50 DC DA DC DT DT DC DC DC DA DA DG DA DG SEQRES 4 D 50 DG DA DG DA DA DG DC DA DG DT DT SEQRES 1 E 50 DA DA DC DT DG DC DT DT DC DT DC DC DT SEQRES 2 E 50 DC DT DT DG DG DG DA DA DG DT DG DT DA SEQRES 3 E 50 DA DG DG DA DA DG DC DT DG DC DA DG DC SEQRES 4 E 50 DA DC DC DA DG DG DA DT DC DA DG SEQRES 1 C 154 C A A A C C C C U U C G G SEQRES 2 C 154 G G G A G G G C G C G U U SEQRES 3 C 154 G G A G C G C C U U A G U SEQRES 4 C 154 U U G A G G U G C A G A A SEQRES 5 C 154 U C A A A A A A A C U G C SEQRES 6 C 154 G A C G A U G G A G G U C SEQRES 7 C 154 G U U U C A G U C U C U G SEQRES 8 C 154 U A C A C U C A A A A A A SEQRES 9 C 154 U U C A C U U G A G A A A SEQRES 10 C 154 U C A A G U G A A U A U C SEQRES 11 C 154 C A A C G G A A G U G U A SEQRES 12 C 154 A G G A A G C U G C A SEQRES 1 A 506 MET ALA THR GLU TYR THR CYS ILE THR ARG LYS ILE GLU SEQRES 2 A 506 VAL HIS LEU HIS ARG HIS GLY GLU TYR GLU GLU ALA LYS SEQRES 3 A 506 GLN ARG LEU ILE ASP ASP TYR ARG VAL TRP ASP THR ILE SEQRES 4 A 506 ASN ASP ASN LEU TYR LYS ALA ALA ASN ARG ILE VAL SER SEQRES 5 A 506 HIS CYS PHE PHE ASN ASP ALA TYR GLU TYR ARG LEU LYS SEQRES 6 A 506 ILE HIS SER PRO ARG PHE GLN GLU ILE GLU LYS LEU LEU SEQRES 7 A 506 LYS TYR PRO LYS ARG ASN LYS LEU THR ASP GLU ASP ILE SEQRES 8 A 506 LYS GLN LEU LYS ALA GLU ARG LYS GLN LEU PHE ALA ASP SEQRES 9 A 506 PHE LYS LYS GLN ARG HIS THR PHE LEU ARG GLY GLY VAL SEQRES 10 A 506 ALA GLU GLY ALA ASN PRO GLU GLN ASN SER THR TYR LYS SEQRES 11 A 506 VAL ILE SER ASN GLU PHE LEU GLU VAL ILE PRO SER GLU SEQRES 12 A 506 ILE LEU THR ASN LEU ASN GLN ASN ILE SER SER THR TYR SEQRES 13 A 506 LYS ASN TYR SER LEU ASP VAL GLU ARG GLY ILE ARG THR SEQRES 14 A 506 ILE PRO ASN TYR LYS ARG GLY ILE PRO VAL PRO PHE SER SEQRES 15 A 506 ILE LYS GLN ARG GLY GLU LEU MET LEU LYS SER ARG ASP SEQRES 16 A 506 ASP GLY SER ILE TYR VAL ARG PHE PRO LEU GLY LEU GLU SEQRES 17 A 506 TRP ASP LEU SER PHE GLY ARG ASP ARG SER ASN ASN ARG SEQRES 18 A 506 GLU ILE VAL GLU ARG VAL LEU SER GLY GLN TYR ASP VAL SEQRES 19 A 506 GLY ASN SER SER ILE GLN GLU SER LYS ASN ARG LYS ARG SEQRES 20 A 506 PHE LEU LEU LEU VAL VAL LYS ILE PRO LYS GLU ASN HIS SEQRES 21 A 506 ASN LEU ASN PRO ASP ARG ILE VAL GLY VAL ASP LEU GLY SEQRES 22 A 506 ILE ASN ILE PRO LEU TYR ALA ALA LEU ASN ASP ASN ASP SEQRES 23 A 506 TYR GLY GLY MET GLY ILE GLY SER ARG GLU GLN PHE LEU SEQRES 24 A 506 ASN MET ARG MET ARG MET ASP ALA LYS LYS ARG GLU LEU SEQRES 25 A 506 GLN ARG ASN LEU ARG GLN SER THR ASN GLY GLY HIS GLY SEQRES 26 A 506 ARG LYS GLN LYS LEU GLN ALA LEU GLU ARG PHE GLU GLY SEQRES 27 A 506 LYS GLU ARG ASN TRP VAL HIS LEU GLN ASN HIS ILE PHE SEQRES 28 A 506 SER LYS SER ILE ILE GLU TYR ALA VAL LYS ASN ASN ALA SEQRES 29 A 506 GLY ALA ILE GLN MET GLU ARG LEU THR GLY PHE GLY ARG SEQRES 30 A 506 ASP LYS ASN ASP GLU VAL ASP SER ASN PHE LYS PHE ILE SEQRES 31 A 506 LEU ARG TYR TRP SER PHE PHE GLU LEU GLN THR MET ILE SEQRES 32 A 506 GLU TYR LYS ALA ASN ALA ALA GLY ILE GLU VAL ARG TYR SEQRES 33 A 506 VAL ASP PRO TYR HIS THR SER GLN THR CYS SER PHE CYS SEQRES 34 A 506 GLY HIS TYR GLU LYS GLY GLN ARG LEU ASN GLN SER THR SEQRES 35 A 506 PHE VAL CYS LYS ASN PRO ASP CYS GLU LYS GLY LYS GLY SEQRES 36 A 506 LYS LYS LEU SER ASP GLY THR TYR GLN GLY ILE ASN ALA SEQRES 37 A 506 ASP TRP ASN ALA ALA ARG ASN ILE ALA LEU SER ASP LYS SEQRES 38 A 506 ILE VAL ASP ARG LYS LYS LYS GLY GLY SER GLY GLY SER SEQRES 39 A 506 GLY GLY SER GLY PRO PRO LYS LYS LYS ARG LYS VAL HELIX 1 AA1 GLU B 24 SER B 68 1 45 HELIX 2 AA2 SER B 68 TYR B 80 1 13 HELIX 3 AA3 THR B 87 LEU B 113 1 27 HELIX 4 AA4 THR B 128 LEU B 137 1 10 HELIX 5 AA5 PRO B 141 GLY B 166 1 26 HELIX 6 AA6 ASN B 219 SER B 229 1 11 HELIX 7 AA7 TYR A 22 ASP A 41 1 20 HELIX 8 AA8 ASN A 42 SER A 68 1 27 HELIX 9 AA9 SER A 68 TYR A 80 1 13 HELIX 10 AB1 TYR A 80 LYS A 85 1 6 HELIX 11 AB2 THR A 87 GLY A 115 1 29 HELIX 12 AB3 GLN A 125 LEU A 137 1 13 HELIX 13 AB4 PRO A 141 ASN A 158 1 18 HELIX 14 AB5 TYR A 159 ARG A 165 1 7 HELIX 15 AB6 PRO A 204 GLY A 206 5 3 HELIX 16 AB7 ASN A 219 SER A 229 1 11 HELIX 17 AB8 LEU A 299 LYS A 308 1 10 HELIX 18 AB9 LYS A 309 LEU A 316 1 8 HELIX 19 AC1 ALA A 332 ASN A 362 1 31 HELIX 20 AC2 SER A 395 GLY A 411 1 17 HELIX 21 AC3 CYS A 450 GLY A 455 1 6 HELIX 22 AC4 ASN A 467 LEU A 478 1 12 SHEET 1 AA1 7 VAL B 179 PRO B 180 0 SHEET 2 AA1 7 SER B 238 GLU B 241 -1 O ILE B 239 N VAL B 179 SHEET 3 AA1 7 ARG B 247 LYS B 254 -1 O LEU B 250 N SER B 238 SHEET 4 AA1 7 THR B 9 LEU B 16 -1 N ARG B 10 O LEU B 251 SHEET 5 AA1 7 LEU B 207 LEU B 211 -1 O ASP B 210 N HIS B 15 SHEET 6 AA1 7 ILE B 199 PHE B 203 -1 N PHE B 203 O LEU B 207 SHEET 7 AA1 7 LEU B 191 SER B 193 -1 N LYS B 192 O TYR B 200 SHEET 1 AA2 4 VAL B 179 PRO B 180 0 SHEET 2 AA2 4 SER B 238 GLU B 241 -1 O ILE B 239 N VAL B 179 SHEET 3 AA2 4 ARG B 247 LYS B 254 -1 O LEU B 250 N SER B 238 SHEET 4 AA2 4 ASP B 233 VAL B 234 -1 N ASP B 233 O LYS B 254 SHEET 1 AA3 7 VAL A 179 PHE A 181 0 SHEET 2 AA3 7 SER A 237 GLU A 241 -1 O ILE A 239 N VAL A 179 SHEET 3 AA3 7 ARG A 247 LYS A 254 -1 O LEU A 250 N SER A 238 SHEET 4 AA3 7 CYS A 7 LEU A 16 -1 N ILE A 12 O LEU A 249 SHEET 5 AA3 7 GLU A 208 SER A 212 -1 O SER A 212 N GLU A 13 SHEET 6 AA3 7 ILE A 199 ARG A 202 -1 N VAL A 201 O TRP A 209 SHEET 7 AA3 7 LEU A 191 SER A 193 -1 N LYS A 192 O TYR A 200 SHEET 1 AA4 4 VAL A 179 PHE A 181 0 SHEET 2 AA4 4 SER A 237 GLU A 241 -1 O ILE A 239 N VAL A 179 SHEET 3 AA4 4 ARG A 247 LYS A 254 -1 O LEU A 250 N SER A 238 SHEET 4 AA4 4 ASP A 233 VAL A 234 -1 N ASP A 233 O LYS A 254 SHEET 1 AA5 2 LYS A 184 GLN A 185 0 SHEET 2 AA5 2 GLU A 188 LEU A 189 -1 O GLU A 188 N GLN A 185 SHEET 1 AA6 4 TYR A 279 ALA A 281 0 SHEET 2 AA6 4 ASN A 263 ASP A 271 -1 N GLY A 269 O ALA A 281 SHEET 3 AA6 4 ALA A 364 GLU A 370 1 O ALA A 366 N VAL A 268 SHEET 4 AA6 4 GLU A 413 VAL A 417 1 O ARG A 415 N ILE A 367 SHEET 1 AA7 2 ARG A 437 ASN A 439 0 SHEET 2 AA7 2 THR A 442 PHE A 443 -1 O THR A 442 N LEU A 438 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 635 0 0 22 30 0 0 6 9024 5 0 98 END