HEADER APOPTOSIS 03-APR-25 9O14 TITLE CRYSTAL STRUCTURE OF BCL-2 IN COMPLEX WITH A STAPLED BAD BH3 PEPTIDE TITLE 2 BAD SAHB 4.2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOPTOSIS REGULATOR BCL-2,BCL-2-LIKE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL2-L-1,APOPTOSIS REGULATOR BCL-X; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: STAPLED BAD BH3 PEPTIDE BAD SAHB 4.2; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL2, BCL2L1, BCL2L, BCLX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS APOPTOSIS REGULATOR, STAPLED PEPTIDE, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR H.-S.SEO,T.M.DEANGELO,G.H.BIRD,L.D.WALENSKY,S.DHE-PAGANON REVDAT 2 15-OCT-25 9O14 1 JRNL REVDAT 1 08-OCT-25 9O14 0 JRNL AUTH T.M.DEANGELO,U.ADHIKARY,K.J.KORSHAVN,H.S.SEO, JRNL AUTH 2 C.R.BROTZEN-SMITH,C.M.CAMARA,S.DHE-PAGANON,G.H.BIRD, JRNL AUTH 3 T.E.WALES,L.D.WALENSKY JRNL TITL STRUCTURAL INSIGHTS INTO CHEMORESISTANCE MUTANTS OF BCL-2 JRNL TITL 2 AND THEIR TARGETING BY STAPLED BAD BH3 HELICES. JRNL REF NAT COMMUN V. 16 8623 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 41022713 JRNL DOI 10.1038/S41467-025-63657-Y REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.2_5419: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8500 - 3.3100 1.00 2868 168 0.1820 0.1944 REMARK 3 2 3.3100 - 2.6300 1.00 2770 140 0.1962 0.2570 REMARK 3 3 2.6300 - 2.2900 1.00 2721 148 0.1828 0.1928 REMARK 3 4 2.2900 - 2.0800 1.00 2716 139 0.1870 0.2234 REMARK 3 5 2.0800 - 1.9400 1.00 2709 141 0.2113 0.2825 REMARK 3 6 1.9400 - 1.8200 1.00 2665 164 0.2524 0.2786 REMARK 3 7 1.8200 - 1.7300 1.00 2706 117 0.2979 0.3329 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1410 REMARK 3 ANGLE : 0.641 1900 REMARK 3 CHIRALITY : 0.038 187 REMARK 3 PLANARITY : 0.005 246 REMARK 3 DIHEDRAL : 14.440 510 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 9:32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.235 -3.202 5.670 REMARK 3 T TENSOR REMARK 3 T11: 0.2662 T22: 0.2594 REMARK 3 T33: 0.2915 T12: -0.0258 REMARK 3 T13: -0.0064 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 1.1863 L22: 2.1791 REMARK 3 L33: 1.8365 L12: -0.4481 REMARK 3 L13: -0.9530 L23: -1.1060 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: -0.0253 S13: -0.3801 REMARK 3 S21: -0.1575 S22: -0.0581 S23: 0.1323 REMARK 3 S31: 0.7404 S32: -0.2860 S33: 0.0007 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 92:107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.694 -4.125 4.363 REMARK 3 T TENSOR REMARK 3 T11: 0.2964 T22: 0.2992 REMARK 3 T33: 0.3223 T12: 0.0261 REMARK 3 T13: 0.0098 T23: 0.0497 REMARK 3 L TENSOR REMARK 3 L11: 0.9880 L22: 0.8148 REMARK 3 L33: 1.7388 L12: -0.3521 REMARK 3 L13: 0.1037 L23: 0.1664 REMARK 3 S TENSOR REMARK 3 S11: 0.3686 S12: -0.3841 S13: -0.3907 REMARK 3 S21: 0.3396 S22: -0.3201 S23: -0.3076 REMARK 3 S31: 0.6792 S32: -0.1197 S33: 0.0063 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 108:117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.931 9.500 15.028 REMARK 3 T TENSOR REMARK 3 T11: 0.4108 T22: 0.3690 REMARK 3 T33: 0.3226 T12: -0.0009 REMARK 3 T13: -0.0333 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 0.3588 L22: 0.3610 REMARK 3 L33: 0.5175 L12: -0.3576 REMARK 3 L13: -0.0099 L23: -0.0409 REMARK 3 S TENSOR REMARK 3 S11: 0.5287 S12: 0.0901 S13: -0.3080 REMARK 3 S21: 0.1631 S22: -0.6802 S23: -0.2228 REMARK 3 S31: -0.7524 S32: 0.2133 S33: 0.0027 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 118:137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.081 16.575 8.808 REMARK 3 T TENSOR REMARK 3 T11: 0.2497 T22: 0.2819 REMARK 3 T33: 0.2790 T12: 0.0038 REMARK 3 T13: 0.0254 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.6715 L22: 0.4477 REMARK 3 L33: 0.9600 L12: 0.1491 REMARK 3 L13: 0.5592 L23: -0.2087 REMARK 3 S TENSOR REMARK 3 S11: 0.1198 S12: 0.1047 S13: 0.5049 REMARK 3 S21: 0.1418 S22: -0.0663 S23: 0.1808 REMARK 3 S31: -0.4409 S32: -0.3866 S33: 0.0063 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 138:163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.788 7.959 4.474 REMARK 3 T TENSOR REMARK 3 T11: 0.2289 T22: 0.1964 REMARK 3 T33: 0.2336 T12: 0.0128 REMARK 3 T13: 0.0096 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.6459 L22: 0.9313 REMARK 3 L33: 1.0713 L12: -0.3934 REMARK 3 L13: 0.2059 L23: 0.0773 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: -0.0108 S13: -0.0090 REMARK 3 S21: 0.0950 S22: 0.0593 S23: -0.0569 REMARK 3 S31: -0.0249 S32: -0.0722 S33: -0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 164:206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.296 4.079 -1.562 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: 0.2073 REMARK 3 T33: 0.1838 T12: -0.0051 REMARK 3 T13: -0.0136 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 3.0051 L22: 2.7210 REMARK 3 L33: 3.2339 L12: -0.4003 REMARK 3 L13: -1.8654 L23: 0.6719 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: 0.0020 S13: -0.0664 REMARK 3 S21: -0.0878 S22: 0.0452 S23: -0.1093 REMARK 3 S31: 0.0876 S32: 0.1489 S33: -0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 303:323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.298 12.868 5.309 REMARK 3 T TENSOR REMARK 3 T11: 0.2457 T22: 0.3056 REMARK 3 T33: 0.2607 T12: -0.0153 REMARK 3 T13: -0.0187 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.3403 L22: 0.9325 REMARK 3 L33: 1.4552 L12: 0.8586 REMARK 3 L13: -0.3774 L23: -0.9599 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: -0.0572 S13: 0.0793 REMARK 3 S21: -0.0339 S22: -0.0681 S23: -0.4056 REMARK 3 S31: -0.0830 S32: 0.2353 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9O14 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-25. REMARK 100 THE DEPOSITION ID IS D_1000294671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20222 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 38.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 2.05300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15.0% PEG-3350 AND 150 MM CSCL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.96000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.78500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.26500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.78500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.96000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.26500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 ARG A 6 REMARK 465 THR A 7 REMARK 465 GLY A 8 REMARK 465 GLY A 74 REMARK 465 ASP A 75 REMARK 465 ASP A 76 REMARK 465 VAL A 77 REMARK 465 GLU A 78 REMARK 465 GLU A 79 REMARK 465 ASN A 80 REMARK 465 ARG A 81 REMARK 465 THR A 82 REMARK 465 GLU A 83 REMARK 465 ALA A 84 REMARK 465 PRO A 85 REMARK 465 GLU A 86 REMARK 465 GLY A 87 REMARK 465 THR A 88 REMARK 465 GLU A 89 REMARK 465 SER A 90 REMARK 465 GLU A 91 REMARK 465 ARG A 207 REMARK 465 LYS B 324 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 450 O HOH A 472 1.79 REMARK 500 NE2 GLN A 25 O HOH A 401 1.84 REMARK 500 O HOH A 463 O HOH A 480 1.84 REMARK 500 O HOH A 486 O HOH A 491 1.88 REMARK 500 O HOH A 453 O HOH A 486 1.95 REMARK 500 OD2 ASP A 103 OH TYR A 202 1.98 REMARK 500 O HOH A 471 O HOH A 485 2.02 REMARK 500 O HOH A 434 O HOH A 459 2.03 REMARK 500 NH2 ARG A 129 O HOH A 402 2.07 REMARK 500 OD1 ASP A 103 NH1 ARG A 106 2.12 REMARK 500 O13 NTA A 303 O HOH A 403 2.12 REMARK 500 OXT NTA A 303 O HOH A 404 2.15 REMARK 500 NH2 ARG A 129 O HOH A 405 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 461 O HOH A 477 4455 1.96 REMARK 500 O HOH A 481 O HOH B 412 4455 2.01 REMARK 500 O HOH A 474 O HOH B 403 4455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ACE B 302 O - C - N ANGL. DEV. = -18.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 20 NE2 REMARK 620 2 GLU A 29 OE1 99.8 REMARK 620 3 GLU A 29 OE2 98.0 61.5 REMARK 620 4 HIS A 120 NE2 51.8 82.1 47.1 REMARK 620 5 HOH A 433 O 100.0 86.5 145.5 146.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 184 ND1 REMARK 620 2 NTA A 303 N 152.0 REMARK 620 3 NTA A 303 O8 76.0 76.0 REMARK 620 4 NTA A 303 O 126.6 81.4 157.4 REMARK 620 N 1 2 3 DBREF 9O14 A 1 75 UNP P10415 BCL2_HUMAN 1 34 DBREF 9O14 A 76 91 UNP Q07817 B2CL1_HUMAN 29 44 DBREF 9O14 A 92 207 UNP P10415 BCL2_HUMAN 92 207 DBREF 9O14 B 302 324 PDB 9O14 9O14 302 324 SEQRES 1 A 166 MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN ARG GLU SEQRES 2 A 166 ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER GLN ARG SEQRES 3 A 166 GLY TYR GLU TRP ASP ALA GLY ASP ASP VAL GLU GLU ASN SEQRES 4 A 166 ARG THR GLU ALA PRO GLU GLY THR GLU SER GLU VAL VAL SEQRES 5 A 166 HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SER ARG SEQRES 6 A 166 ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER GLN LEU SEQRES 7 A 166 HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE ALA THR SEQRES 8 A 166 VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN TRP GLY SEQRES 9 A 166 ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL MET CYS SEQRES 10 A 166 VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU VAL ASP SEQRES 11 A 166 ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN ARG HIS SEQRES 12 A 166 LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP ASP ALA SEQRES 13 A 166 PHE VAL GLU LEU TYR GLY PRO SER MET ARG SEQRES 1 B 23 ACE TRP MK8 ALA GLN ARG MK8 GLY ARG GLU LEU ARG ARG SEQRES 2 B 23 NLE SER ASP GLU PHE VAL ASP SER PHE LYS HET ACE B 302 6 HET MK8 B 304 9 HET MK8 B 308 9 HET NLE B 315 8 HET NI A 301 1 HET NI A 302 1 HET NTA A 303 19 HETNAM ACE ACETYL GROUP HETNAM MK8 2-METHYL-L-NORLEUCINE HETNAM NLE NORLEUCINE HETNAM NI NICKEL (II) ION HETNAM NTA NITRILOTRIACETIC ACID FORMUL 2 ACE C2 H4 O FORMUL 2 MK8 2(C7 H15 N O2) FORMUL 2 NLE C6 H13 N O2 FORMUL 3 NI 2(NI 2+) FORMUL 5 NTA C6 H9 N O6 FORMUL 6 HOH *104(H2 O) HELIX 1 AA1 ASP A 10 GLN A 25 1 16 HELIX 2 AA2 VAL A 93 TYR A 108 1 16 HELIX 3 AA3 TYR A 108 GLN A 118 1 11 HELIX 4 AA4 THR A 125 PHE A 138 1 14 HELIX 5 AA5 ASN A 143 ARG A 164 1 22 HELIX 6 AA6 SER A 167 LEU A 185 1 19 HELIX 7 AA7 LEU A 185 ASN A 192 1 8 HELIX 8 AA8 GLY A 194 GLY A 203 1 10 HELIX 9 AA9 PRO A 204 MET A 206 5 3 HELIX 10 AB1 TRP B 303 PHE B 323 1 21 LINK C ACE B 302 N TRP B 303 1555 1555 1.43 LINK C TRP B 303 N MK8 B 304 1555 1555 1.33 LINK C MK8 B 304 N ALA B 305 1555 1555 1.33 LINK CE MK8 B 304 CE MK8 B 308 1555 1555 1.32 LINK C ARG B 307 N MK8 B 308 1555 1555 1.33 LINK C MK8 B 308 N GLY B 309 1555 1555 1.33 LINK C ARG B 314 N NLE B 315 1555 1555 1.33 LINK C NLE B 315 N SER B 316 1555 1555 1.34 LINK NE2 HIS A 20 NI NI A 301 1555 1555 1.97 LINK OE1 GLU A 29 NI NI A 301 1555 1555 2.15 LINK OE2 GLU A 29 NI NI A 301 1555 1555 2.11 LINK NE2 HIS A 120 NI NI A 301 1555 3555 1.96 LINK ND1 HIS A 184 NI NI A 302 1555 1555 2.10 LINK NI NI A 301 O HOH A 433 1555 1555 1.83 LINK NI NI A 302 N NTA A 303 1555 1555 2.23 LINK NI NI A 302 O8 NTA A 303 1555 1555 2.15 LINK NI NI A 302 O NTA A 303 1555 1555 2.20 CRYST1 51.920 58.530 61.570 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016242 0.00000 CONECT 110 1355 CONECT 189 1355 CONECT 190 1355 CONECT 979 1356 CONECT 1163 1164 1165 1169 CONECT 1164 1163 CONECT 1165 1163 1166 1167 1168 CONECT 1166 1165 CONECT 1167 1165 CONECT 1168 1165 CONECT 1169 1163 CONECT 1171 1184 CONECT 1183 1185 1186 1192 CONECT 1184 1171 1186 CONECT 1185 1183 CONECT 1186 1183 1184 1187 1191 CONECT 1187 1186 1190 CONECT 1188 1189 1190 CONECT 1189 1188 1223 CONECT 1190 1187 1188 CONECT 1191 1186 CONECT 1192 1183 CONECT 1208 1218 CONECT 1217 1219 1220 1226 CONECT 1218 1208 1220 CONECT 1219 1217 CONECT 1220 1217 1218 1221 1225 CONECT 1221 1220 1224 CONECT 1222 1223 1224 CONECT 1223 1189 1222 CONECT 1224 1221 1222 CONECT 1225 1220 CONECT 1226 1217 CONECT 1271 1280 CONECT 1280 1271 1281 CONECT 1281 1280 1282 1284 CONECT 1282 1281 1283 1288 CONECT 1283 1282 CONECT 1284 1281 1285 CONECT 1285 1284 1286 CONECT 1286 1285 1287 CONECT 1287 1286 CONECT 1288 1282 CONECT 1355 110 189 190 1408 CONECT 1356 979 1357 1362 1369 CONECT 1357 1356 1358 1359 1360 CONECT 1358 1357 1361 1370 1371 CONECT 1359 1357 1365 1372 1373 CONECT 1360 1357 1364 1374 1375 CONECT 1361 1358 1362 1363 CONECT 1362 1356 1361 CONECT 1363 1361 CONECT 1364 1360 1368 1369 CONECT 1365 1359 1366 1367 CONECT 1366 1365 CONECT 1367 1365 CONECT 1368 1364 CONECT 1369 1356 1364 CONECT 1370 1358 CONECT 1371 1358 CONECT 1372 1359 CONECT 1373 1359 CONECT 1374 1360 CONECT 1375 1360 CONECT 1408 1355 MASTER 423 0 7 10 0 0 0 6 1468 2 65 15 END