data_9O47 # _entry.id 9O47 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.413 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9O47 pdb_00009o47 10.2210/pdb9o47/pdb WWPDB D_1000294640 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-04-22 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9O47 _pdbx_database_status.recvd_initial_deposition_date 2025-04-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_contact_author.id 2 _pdbx_contact_author.email martin.egli@vanderbilt.edu _pdbx_contact_author.name_first Martin _pdbx_contact_author.name_last Egli _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4145-356X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Harp, J.M.' 1 0000-0002-9116-5606 'Egli, M.E.' 2 0000-0003-4145-356X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Acyclic serinol nucleic acid (SNA) modification of siRNAs to overcome seed region mediated off-target effect of RNAi therapeutics while maintaining potency ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chickering, T.' 1 ? primary ;O'Flaherty, D.K. ; 2 ? primary 'Harp, J.M.' 3 0000-0002-9116-5606 primary 'He, G.' 4 ? primary 'Theile, C.S.' 5 ? primary 'Qin, J.' 6 ? primary 'Hyde, S.' 7 ? primary 'Szeto, J.' 8 ? primary 'Janas, M.' 9 ? primary 'Jiang, Y.' 10 ? primary 'Charisse, K.' 11 ? primary 'Maier, M.A.' 12 ? primary 'Manoharan, M.' 13 ? primary 'Egli, M.' 14 ? primary 'Schlegel, M.K.' 15 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Chains: A,B' 3868.420 2 ? ? ? ? 2 non-polymer syn ;[2-[2-(2-$l^{3}-oxidanylidene-5-methyl-4-oxidanylidene-4,5-dihydro-2~{H}-pyrimidin-1-yl)ethanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate ; 337.223 2 ? ? ? ? 3 non-polymer syn "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 403.077 2 ? ? ? ? 4 non-polymer syn "GUANOSINE-5'-MONOPHOSPHATE" 363.221 4 ? ? ? ? 5 non-polymer syn "CYTIDINE-5'-MONOPHOSPHATE" 323.197 3 ? ? ? ? 6 non-polymer syn "CYTIDINE-5'-MONOPHOSPHATE" 323.197 1 ? ? ? ? 7 water nat water 18.015 95 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CGCGAA(BRU)(TSN)CGCG' _entity_poly.pdbx_seq_one_letter_code_can CGCGAAUXCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;[2-[2-(2-$l^{3}-oxidanylidene-5-methyl-4-oxidanylidene-4,5-dihydro-2~{H}-pyrimidin-1-yl)ethanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate ; A1B9T 3 "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 5BU 4 "GUANOSINE-5'-MONOPHOSPHATE" 5GP 5 "CYTIDINE-5'-MONOPHOSPHATE" C5P 6 "CYTIDINE-5'-MONOPHOSPHATE" C 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 C n 1 4 G n 1 5 A n 1 6 A n 1 7 BRU n 1 8 TSN n 1 9 C n 1 10 G n 1 11 C n 1 12 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O9 P' 403.077 5GP non-polymer . "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A1B9T 'RNA linking' . ;[2-[2-(2-$l^{3}-oxidanylidene-5-methyl-4-oxidanylidene-4,5-dihydro-2~{H}-pyrimidin-1-yl)ethanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate ; ? 'C10 H16 N3 O8 P' 337.223 BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 C5P non-polymer . "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 TSN non-polymer . 'TRICHOSTATIN A' '7-[4-(DIMETHYLAMINO)PHENYL]-N-HYDROXY-4,6-DIMETHYL-7-OXO-2,4-HEPTADIENAMIDE' 'C17 H22 N2 O3' 302.368 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 A 6 6 6 A A A . n A 1 7 BRU 7 7 ? ? ? A . n A 1 8 TSN 8 8 ? ? ? A . n A 1 9 C 9 9 ? ? ? A . n A 1 10 G 10 10 ? ? ? A . n A 1 11 C 11 11 ? ? ? A . n A 1 12 G 12 12 ? ? ? A . n B 1 1 C 1 1 1 C C B . n B 1 2 G 2 2 2 G G B . n B 1 3 C 3 3 3 C C B . n B 1 4 G 4 4 4 G G B . n B 1 5 A 5 5 5 A A B . n B 1 6 A 6 6 6 A A B . n B 1 7 BRU 7 7 ? ? ? B . n B 1 8 TSN 8 8 ? ? ? B . n B 1 9 C 9 9 ? ? ? B . n B 1 10 G 10 10 ? ? ? B . n B 1 11 C 11 11 ? ? ? B . n B 1 12 G 12 12 ? ? ? B . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1B9T _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1B9T _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1B9T 1 101 7 A1B9T TSN A . D 3 5BU 1 102 8 5BU 5BU A . E 4 5GP 1 103 10 5GP G A . F 5 C5P 1 104 11 C5P C A . G 4 5GP 1 105 12 5GP G A . H 5 C5P 1 106 9 C5P C A . I 6 C 1 101 9 C C B . J 4 5GP 1 102 10 5GP G B . K 5 C5P 1 103 11 C5P C B . L 4 5GP 1 104 12 5GP G B . M 2 A1B9T 1 105 7 A1B9T TSN B . N 3 5BU 1 106 8 5BU 5BU B . O 7 HOH 1 201 29 HOH HOH A . O 7 HOH 2 202 123 HOH HOH A . O 7 HOH 3 203 98 HOH HOH A . O 7 HOH 4 204 113 HOH HOH A . O 7 HOH 5 205 46 HOH HOH A . O 7 HOH 6 206 2 HOH HOH A . O 7 HOH 7 207 41 HOH HOH A . O 7 HOH 8 208 51 HOH HOH A . O 7 HOH 9 209 1 HOH HOH A . O 7 HOH 10 210 69 HOH HOH A . O 7 HOH 11 211 14 HOH HOH A . O 7 HOH 12 212 49 HOH HOH A . O 7 HOH 13 213 34 HOH HOH A . O 7 HOH 14 214 43 HOH HOH A . O 7 HOH 15 215 120 HOH HOH A . O 7 HOH 16 216 9 HOH HOH A . O 7 HOH 17 217 12 HOH HOH A . O 7 HOH 18 218 177 HOH HOH A . O 7 HOH 19 219 100 HOH HOH A . O 7 HOH 20 220 327 HOH HOH A . O 7 HOH 21 221 13 HOH HOH A . O 7 HOH 22 222 57 HOH HOH A . O 7 HOH 23 223 15 HOH HOH A . O 7 HOH 24 224 124 HOH HOH A . O 7 HOH 25 225 295 HOH HOH A . O 7 HOH 26 226 19 HOH HOH A . O 7 HOH 27 227 47 HOH HOH A . O 7 HOH 28 228 83 HOH HOH A . O 7 HOH 29 229 281 HOH HOH A . O 7 HOH 30 230 25 HOH HOH A . O 7 HOH 31 231 33 HOH HOH A . O 7 HOH 32 232 40 HOH HOH A . O 7 HOH 33 233 97 HOH HOH A . O 7 HOH 34 234 135 HOH HOH A . O 7 HOH 35 235 273 HOH HOH A . O 7 HOH 36 236 155 HOH HOH A . O 7 HOH 37 237 89 HOH HOH A . O 7 HOH 38 238 154 HOH HOH A . P 7 HOH 1 201 67 HOH HOH B . P 7 HOH 2 202 44 HOH HOH B . P 7 HOH 3 203 26 HOH HOH B . P 7 HOH 4 204 168 HOH HOH B . P 7 HOH 5 205 84 HOH HOH B . P 7 HOH 6 206 329 HOH HOH B . P 7 HOH 7 207 73 HOH HOH B . P 7 HOH 8 208 75 HOH HOH B . P 7 HOH 9 209 45 HOH HOH B . P 7 HOH 10 210 30 HOH HOH B . P 7 HOH 11 211 6 HOH HOH B . P 7 HOH 12 212 11 HOH HOH B . P 7 HOH 13 213 59 HOH HOH B . P 7 HOH 14 214 70 HOH HOH B . P 7 HOH 15 215 119 HOH HOH B . P 7 HOH 16 216 17 HOH HOH B . P 7 HOH 17 217 38 HOH HOH B . P 7 HOH 18 218 61 HOH HOH B . P 7 HOH 19 219 4 HOH HOH B . P 7 HOH 20 220 56 HOH HOH B . P 7 HOH 21 221 16 HOH HOH B . P 7 HOH 22 222 142 HOH HOH B . P 7 HOH 23 223 58 HOH HOH B . P 7 HOH 24 224 112 HOH HOH B . P 7 HOH 25 225 35 HOH HOH B . P 7 HOH 26 226 74 HOH HOH B . P 7 HOH 27 227 48 HOH HOH B . P 7 HOH 28 228 10 HOH HOH B . P 7 HOH 29 229 3 HOH HOH B . P 7 HOH 30 230 91 HOH HOH B . P 7 HOH 31 231 180 HOH HOH B . P 7 HOH 32 232 328 HOH HOH B . P 7 HOH 33 233 5 HOH HOH B . P 7 HOH 34 234 28 HOH HOH B . P 7 HOH 35 235 36 HOH HOH B . P 7 HOH 36 236 24 HOH HOH B . P 7 HOH 37 237 81 HOH HOH B . P 7 HOH 38 238 7 HOH HOH B . P 7 HOH 39 239 39 HOH HOH B . P 7 HOH 40 240 79 HOH HOH B . P 7 HOH 41 241 99 HOH HOH B . P 7 HOH 42 242 78 HOH HOH B . P 7 HOH 43 243 54 HOH HOH B . P 7 HOH 44 244 37 HOH HOH B . P 7 HOH 45 245 60 HOH HOH B . P 7 HOH 46 246 131 HOH HOH B . P 7 HOH 47 247 8 HOH HOH B . P 7 HOH 48 248 151 HOH HOH B . P 7 HOH 49 249 64 HOH HOH B . P 7 HOH 50 250 161 HOH HOH B . P 7 HOH 51 251 109 HOH HOH B . P 7 HOH 52 252 279 HOH HOH B . P 7 HOH 53 253 77 HOH HOH B . P 7 HOH 54 254 68 HOH HOH B . P 7 HOH 55 255 277 HOH HOH B . P 7 HOH 56 256 174 HOH HOH B . P 7 HOH 57 257 219 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.21.1_5286 ? 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? 'PROTEUM PLUS' ? ? ? . ? 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? 'PROTEUM PLUS' ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? HKL2Map ? ? ? . ? 4 # _cell.angle_alpha 110.874 _cell.angle_alpha_esd ? _cell.angle_beta 100.287 _cell.angle_beta_esd ? _cell.angle_gamma 111.585 _cell.angle_gamma_esd ? _cell.entry_id 9O47 _cell.details ? _cell.formula_units_Z ? _cell.length_a 24.021 _cell.length_a_esd ? _cell.length_b 29.185 _cell.length_b_esd ? _cell.length_c 29.782 _cell.length_c_esd ? _cell.volume 16949.084 _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9O47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9O47 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Drops contained 400 nanoliters of 1 mM RNA and 400 nanoliters of buffer containing 10% 2-methyl-2,4- pentanediol (MPD), 12 mM spermine 4 HCl, 80 mM potassium chloride, and 40 mM sodium cacodylate, pH 6.0. Drops were equilibrated against reservoirs containing 70 microliters of 40% MPD ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'Bruker PHOTON III' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2024-08-05 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.342 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'LIQUID ANODE' _diffrn_source.target ? _diffrn_source.type 'Excillum MetalJet D2+ 70 kV' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.342 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 16.60 _reflns.entry_id 9O47 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.6 _reflns.d_resolution_low 16.24 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8629 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.25 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.9 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 3.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low 1.7 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2924 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.259 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 23.79 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9O47 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.60 _refine.ls_d_res_low 16.24 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16979 _refine.ls_number_reflns_R_free 806 _refine.ls_number_reflns_R_work 16173 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.25 _refine.ls_percent_reflns_R_free 4.75 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1972 _refine.ls_R_factor_R_free 0.2233 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1958 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.05 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.0738 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1939 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 16.24 _refine_hist.number_atoms_solvent 95 _refine_hist.number_atoms_total 605 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 254 _refine_hist.pdbx_number_atoms_ligand 256 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0040 ? 562 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 0.9357 ? 860 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.0249 ? 108 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.0047 ? 28 ? f_plane_restr ? ? ? 'X-RAY DIFFRACTION' ? 23.3231 ? 336 ? f_dihedral_angle_d ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.60 1.70 . . 154 2604 96.84 . . . . 0.2681 . . . . . . . . . . . . . . . 0.2782 'X-RAY DIFFRACTION' 1.70 1.83 . . 127 2692 97.27 . . . . 0.2276 . . . . . . . . . . . . . . . 0.2664 'X-RAY DIFFRACTION' 1.83 2.02 . . 125 2738 98.59 . . . . 0.2394 . . . . . . . . . . . . . . . 0.2762 'X-RAY DIFFRACTION' 2.02 2.31 . . 113 2717 98.95 . . . . 0.2108 . . . . . . . . . . . . . . . 0.2022 'X-RAY DIFFRACTION' 2.31 2.90 . . 130 2749 99.69 . . . . 0.2152 . . . . . . . . . . . . . . . 0.2962 'X-RAY DIFFRACTION' 2.90 16.24 . . 157 2673 98.13 . . . . 0.1560 . . . . . . . . . . . . . . . 0.1782 # _struct.entry_id 9O47 _struct.title 'RNA dodecamer containing a serinol nucleic acid.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9O47 _struct_keywords.text 'RNA, serinol nucleic acid' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 4 ? H N N 5 ? I N N 6 ? J N N 4 ? K N N 5 ? L N N 4 ? M N N 2 ? N N N 3 ? O N N 7 ? P N N 7 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9O47 _struct_ref.pdbx_db_accession 9O47 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9O47 A 1 ? 12 ? 9O47 1 ? 12 ? 1 12 2 1 9O47 B 1 ? 12 ? 9O47 1 ? 12 ? 1 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1020 ? 1 MORE -8 ? 1 'SSA (A^2)' 4730 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,O 1 2 B,I,J,K,L,M,N,P # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_554 x,y,z-1 1.0000000000 0.0000000000 0.0000000000 5.3184390061 0.0000000000 1.0000000000 0.0000000000 13.5161470458 0.0000000000 0.0000000000 1.0000000000 -25.9999134532 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 6 "O3'" ? ? ? 1_555 C A1B9T . P ? ? A A 6 A A1B9T 101 1_555 ? ? ? ? ? ? ? 1.562 ? ? covale2 covale one ? C A1B9T . "O3'" ? ? ? 1_555 D 5BU . P ? ? A A1B9T 101 A 5BU 102 1_555 ? ? ? ? ? ? ? 1.557 ? ? covale3 covale one ? D 5BU . "O3'" ? ? ? 1_555 H C5P . P ? ? A 5BU 102 A C5P 106 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale4 covale none ? E 5GP . "O3'" ? ? ? 1_555 F C5P . P ? ? A 5GP 103 A C5P 104 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale5 covale both ? E 5GP . P ? ? ? 1_555 I C . "O3'" ? ? A 5GP 103 B C 101 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale6 covale one ? F C5P . "O3'" ? ? ? 1_555 G 5GP . P ? ? A C5P 104 A 5GP 105 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale7 covale one ? H C5P . "O3'" ? ? ? 1_555 J 5GP . P ? ? A C5P 106 B 5GP 102 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale8 covale both ? B A 6 "O3'" ? ? ? 1_555 M A1B9T . P ? ? B A 6 B A1B9T 105 1_555 ? ? ? ? ? ? ? 1.514 ? ? covale9 covale both ? I C . P ? ? ? 1_555 N 5BU . "O3'" ? ? B C 101 B 5BU 106 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale10 covale none ? J 5GP . "O3'" ? ? ? 1_555 K C5P . P ? ? B 5GP 102 B C5P 103 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale11 covale one ? K C5P . "O3'" ? ? ? 1_555 L 5GP . P ? ? B C5P 103 B 5GP 104 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale12 covale one ? M A1B9T . "O3'" ? ? ? 1_555 N 5BU . P ? ? B A1B9T 105 B 5BU 106 1_555 ? ? ? ? ? ? ? 1.509 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 9O47 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O3'" B A 6 ? ? "O5'" B A1B9T 105 ? ? 1.96 2 1 O A HOH 236 ? ? O A HOH 238 ? ? 2.03 3 1 "O3'" A A 6 ? ? OP2 A A1B9T 101 ? ? 2.07 4 1 "O3'" B A 6 ? ? OP1 B A1B9T 105 ? ? 2.10 5 1 OP1 B G 4 ? ? O B HOH 201 ? ? 2.12 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 204 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 207 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_544 _pdbx_validate_symm_contact.dist 2.03 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A A 5 ? ? N1 A A 5 ? ? C2 A A 5 ? ? 123.08 118.60 4.48 0.60 N 2 1 C6 B A 5 ? ? N1 B A 5 ? ? C2 B A 5 ? ? 123.51 118.60 4.91 0.60 N # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A BRU 7 ? A BRU 7 2 1 Y 1 A TSN 8 ? A TSN 8 3 1 Y 1 A C 9 ? A C 9 4 1 Y 1 A G 10 ? A G 10 5 1 Y 1 A C 11 ? A C 11 6 1 Y 1 A G 12 ? A G 12 7 1 Y 1 B BRU 7 ? B BRU 7 8 1 Y 1 B TSN 8 ? B TSN 8 9 1 Y 1 B C 9 ? B C 9 10 1 Y 1 B G 10 ? B G 10 11 1 Y 1 B C 11 ? B C 11 12 1 Y 1 B G 12 ? B G 12 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5BU P P N N 1 5BU OP1 O N N 2 5BU OP2 O N N 3 5BU OP3 O N N 4 5BU "O5'" O N N 5 5BU "C5'" C N N 6 5BU "C4'" C N R 7 5BU "O4'" O N N 8 5BU "C3'" C N S 9 5BU "O3'" O N N 10 5BU "C2'" C N R 11 5BU "O2'" O N N 12 5BU "C1'" C N R 13 5BU N1 N N N 14 5BU C2 C N N 15 5BU O2 O N N 16 5BU N3 N N N 17 5BU C4 C N N 18 5BU O4 O N N 19 5BU C5 C N N 20 5BU C6 C N N 21 5BU BR BR N N 22 5BU HOP2 H N N 23 5BU HOP3 H N N 24 5BU "H5'" H N N 25 5BU "H5''" H N N 26 5BU "H4'" H N N 27 5BU "H3'" H N N 28 5BU "HO3'" H N N 29 5BU "H2'" H N N 30 5BU "HO2'" H N N 31 5BU "H1'" H N N 32 5BU H3 H N N 33 5BU H6 H N N 34 5GP P P N N 35 5GP O1P O N N 36 5GP O2P O N N 37 5GP O3P O N N 38 5GP "O5'" O N N 39 5GP "C5'" C N N 40 5GP "C4'" C N R 41 5GP "O4'" O N N 42 5GP "C3'" C N S 43 5GP "O3'" O N N 44 5GP "C2'" C N R 45 5GP "O2'" O N N 46 5GP "C1'" C N R 47 5GP N9 N Y N 48 5GP C8 C Y N 49 5GP N7 N Y N 50 5GP C5 C Y N 51 5GP C6 C N N 52 5GP O6 O N N 53 5GP N1 N N N 54 5GP C2 C N N 55 5GP N2 N N N 56 5GP N3 N N N 57 5GP C4 C Y N 58 5GP HOP2 H N N 59 5GP HOP3 H N N 60 5GP "H5'1" H N N 61 5GP "H5'2" H N N 62 5GP "H4'" H N N 63 5GP "H3'" H N N 64 5GP "HO3'" H N N 65 5GP "H2'" H N N 66 5GP "HO2'" H N N 67 5GP "H1'" H N N 68 5GP H8 H N N 69 5GP HN1 H N N 70 5GP HN21 H N N 71 5GP HN22 H N N 72 A OP3 O N N 73 A P P N N 74 A OP1 O N N 75 A OP2 O N N 76 A "O5'" O N N 77 A "C5'" C N N 78 A "C4'" C N R 79 A "O4'" O N N 80 A "C3'" C N S 81 A "O3'" O N N 82 A "C2'" C N R 83 A "O2'" O N N 84 A "C1'" C N R 85 A N9 N Y N 86 A C8 C Y N 87 A N7 N Y N 88 A C5 C Y N 89 A C6 C Y N 90 A N6 N N N 91 A N1 N Y N 92 A C2 C Y N 93 A N3 N Y N 94 A C4 C Y N 95 A HOP3 H N N 96 A HOP2 H N N 97 A "H5'" H N N 98 A "H5''" H N N 99 A "H4'" H N N 100 A "H3'" H N N 101 A "HO3'" H N N 102 A "H2'" H N N 103 A "HO2'" H N N 104 A "H1'" H N N 105 A H8 H N N 106 A H61 H N N 107 A H62 H N N 108 A H2 H N N 109 A1B9T O2 O N N 110 A1B9T N1 N N N 111 A1B9T N2 N N N 112 A1B9T C2 C N N 113 A1B9T C4 C N N 114 A1B9T C5 C N N 115 A1B9T C6 C N N 116 A1B9T C7 C N N 117 A1B9T "C1'" C N N 118 A1B9T "C2'" C N N 119 A1B9T "C3'" C N N 120 A1B9T "C4'" C N S 121 A1B9T "C5'" C N N 122 A1B9T N3 N N N 123 A1B9T "O2'" O N N 124 A1B9T "O3'" O N N 125 A1B9T O4 O N N 126 A1B9T "O5'" O N N 127 A1B9T OP1 O N N 128 A1B9T OP2 O N N 129 A1B9T P P N N 130 A1B9T H2 H N N 131 A1B9T H52 H N N 132 A1B9T H51 H N N 133 A1B9T H3 H N N 134 A1B9T H1 H N N 135 A1B9T H5 H N N 136 A1B9T OP3 O N N 137 A1B9T HP3 H N N 138 A1B9T H4 H N N 139 A1B9T H6 H N N 140 A1B9T H7 H N N 141 A1B9T H8 H N N 142 A1B9T H9 H N N 143 A1B9T H10 H N N 144 A1B9T H11 H N N 145 A1B9T H12 H N N 146 A1B9T H13 H N N 147 BRU N1 N N N 148 BRU C2 C N N 149 BRU N3 N N N 150 BRU C4 C N N 151 BRU C5 C N N 152 BRU C6 C N N 153 BRU O2 O N N 154 BRU O4 O N N 155 BRU BR BR N N 156 BRU "C1'" C N R 157 BRU "C2'" C N N 158 BRU "C3'" C N S 159 BRU "C4'" C N R 160 BRU "O3'" O N N 161 BRU "O4'" O N N 162 BRU "C5'" C N N 163 BRU "O5'" O N N 164 BRU P P N N 165 BRU OP1 O N N 166 BRU OP2 O N N 167 BRU OP3 O N N 168 BRU HN3 H N N 169 BRU H6 H N N 170 BRU "H1'" H N N 171 BRU "H2'" H N N 172 BRU "H2''" H N N 173 BRU "H3'" H N N 174 BRU "H4'" H N N 175 BRU "HO3'" H N N 176 BRU "H5'" H N N 177 BRU "H5''" H N N 178 BRU HOP2 H N N 179 BRU HOP3 H N N 180 C OP3 O N N 181 C P P N N 182 C OP1 O N N 183 C OP2 O N N 184 C "O5'" O N N 185 C "C5'" C N N 186 C "C4'" C N R 187 C "O4'" O N N 188 C "C3'" C N S 189 C "O3'" O N N 190 C "C2'" C N R 191 C "O2'" O N N 192 C "C1'" C N R 193 C N1 N N N 194 C C2 C N N 195 C O2 O N N 196 C N3 N N N 197 C C4 C N N 198 C N4 N N N 199 C C5 C N N 200 C C6 C N N 201 C HOP3 H N N 202 C HOP2 H N N 203 C "H5'" H N N 204 C "H5''" H N N 205 C "H4'" H N N 206 C "H3'" H N N 207 C "HO3'" H N N 208 C "H2'" H N N 209 C "HO2'" H N N 210 C "H1'" H N N 211 C H41 H N N 212 C H42 H N N 213 C H5 H N N 214 C H6 H N N 215 C5P O3P O N N 216 C5P P P N N 217 C5P O1P O N N 218 C5P O2P O N N 219 C5P "O5'" O N N 220 C5P "C5'" C N N 221 C5P "C4'" C N R 222 C5P "O4'" O N N 223 C5P "C3'" C N S 224 C5P "O3'" O N N 225 C5P "C2'" C N R 226 C5P "O2'" O N N 227 C5P "C1'" C N R 228 C5P N1 N N N 229 C5P C2 C N N 230 C5P N3 N N N 231 C5P C4 C N N 232 C5P C5 C N N 233 C5P C6 C N N 234 C5P O2 O N N 235 C5P N4 N N N 236 C5P HOP3 H N N 237 C5P HOP2 H N N 238 C5P "H5'1" H N N 239 C5P "H5'2" H N N 240 C5P "H4'" H N N 241 C5P "H3'" H N N 242 C5P "HO3'" H N N 243 C5P "H2'1" H N N 244 C5P "HO2'" H N N 245 C5P "H1'" H N N 246 C5P H5 H N N 247 C5P H6 H N N 248 C5P HN41 H N N 249 C5P HN42 H N N 250 G OP3 O N N 251 G P P N N 252 G OP1 O N N 253 G OP2 O N N 254 G "O5'" O N N 255 G "C5'" C N N 256 G "C4'" C N R 257 G "O4'" O N N 258 G "C3'" C N S 259 G "O3'" O N N 260 G "C2'" C N R 261 G "O2'" O N N 262 G "C1'" C N R 263 G N9 N Y N 264 G C8 C Y N 265 G N7 N Y N 266 G C5 C Y N 267 G C6 C N N 268 G O6 O N N 269 G N1 N N N 270 G C2 C N N 271 G N2 N N N 272 G N3 N N N 273 G C4 C Y N 274 G HOP3 H N N 275 G HOP2 H N N 276 G "H5'" H N N 277 G "H5''" H N N 278 G "H4'" H N N 279 G "H3'" H N N 280 G "HO3'" H N N 281 G "H2'" H N N 282 G "HO2'" H N N 283 G "H1'" H N N 284 G H8 H N N 285 G H1 H N N 286 G H21 H N N 287 G H22 H N N 288 HOH O O N N 289 HOH H1 H N N 290 HOH H2 H N N 291 TSN O1 O N N 292 TSN O2 O N N 293 TSN O3 O N N 294 TSN N1 N N N 295 TSN N2 N N N 296 TSN C1 C Y N 297 TSN C2 C Y N 298 TSN C3 C Y N 299 TSN C4 C Y N 300 TSN C5 C Y N 301 TSN C6 C Y N 302 TSN C7 C N N 303 TSN C8 C N R 304 TSN C9 C N N 305 TSN C10 C N N 306 TSN C11 C N N 307 TSN C12 C N N 308 TSN C13 C N N 309 TSN C14 C N N 310 TSN C15 C N N 311 TSN C17 C N N 312 TSN C16 C N N 313 TSN HO1 H N N 314 TSN HN1 H N N 315 TSN H21 H N N 316 TSN H31 H N N 317 TSN H51 H N N 318 TSN H61 H N N 319 TSN H8 H N N 320 TSN H9 H N N 321 TSN H111 H N N 322 TSN H121 H N N 323 TSN H141 H N N 324 TSN H142 H N N 325 TSN H143 H N N 326 TSN H151 H N N 327 TSN H152 H N N 328 TSN H153 H N N 329 TSN H171 H N N 330 TSN H172 H N N 331 TSN H173 H N N 332 TSN H161 H N N 333 TSN H162 H N N 334 TSN H163 H N N 335 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5BU P OP1 doub N N 1 5BU P OP2 sing N N 2 5BU P OP3 sing N N 3 5BU P "O5'" sing N N 4 5BU OP2 HOP2 sing N N 5 5BU OP3 HOP3 sing N N 6 5BU "O5'" "C5'" sing N N 7 5BU "C5'" "C4'" sing N N 8 5BU "C5'" "H5'" sing N N 9 5BU "C5'" "H5''" sing N N 10 5BU "C4'" "O4'" sing N N 11 5BU "C4'" "C3'" sing N N 12 5BU "C4'" "H4'" sing N N 13 5BU "O4'" "C1'" sing N N 14 5BU "C3'" "O3'" sing N N 15 5BU "C3'" "C2'" sing N N 16 5BU "C3'" "H3'" sing N N 17 5BU "O3'" "HO3'" sing N N 18 5BU "C2'" "O2'" sing N N 19 5BU "C2'" "C1'" sing N N 20 5BU "C2'" "H2'" sing N N 21 5BU "O2'" "HO2'" sing N N 22 5BU "C1'" N1 sing N N 23 5BU "C1'" "H1'" sing N N 24 5BU N1 C2 sing N N 25 5BU N1 C6 sing N N 26 5BU C2 O2 doub N N 27 5BU C2 N3 sing N N 28 5BU N3 C4 sing N N 29 5BU N3 H3 sing N N 30 5BU C4 O4 doub N N 31 5BU C4 C5 sing N N 32 5BU C5 C6 doub N N 33 5BU C5 BR sing N N 34 5BU C6 H6 sing N N 35 5GP P O1P doub N N 36 5GP P O2P sing N N 37 5GP P O3P sing N N 38 5GP P "O5'" sing N N 39 5GP O2P HOP2 sing N N 40 5GP O3P HOP3 sing N N 41 5GP "O5'" "C5'" sing N N 42 5GP "C5'" "C4'" sing N N 43 5GP "C5'" "H5'1" sing N N 44 5GP "C5'" "H5'2" sing N N 45 5GP "C4'" "O4'" sing N N 46 5GP "C4'" "C3'" sing N N 47 5GP "C4'" "H4'" sing N N 48 5GP "O4'" "C1'" sing N N 49 5GP "C3'" "O3'" sing N N 50 5GP "C3'" "C2'" sing N N 51 5GP "C3'" "H3'" sing N N 52 5GP "O3'" "HO3'" sing N N 53 5GP "C2'" "O2'" sing N N 54 5GP "C2'" "C1'" sing N N 55 5GP "C2'" "H2'" sing N N 56 5GP "O2'" "HO2'" sing N N 57 5GP "C1'" N9 sing N N 58 5GP "C1'" "H1'" sing N N 59 5GP N9 C8 sing Y N 60 5GP N9 C4 sing Y N 61 5GP C8 N7 doub Y N 62 5GP C8 H8 sing N N 63 5GP N7 C5 sing Y N 64 5GP C5 C6 sing N N 65 5GP C5 C4 doub Y N 66 5GP C6 O6 doub N N 67 5GP C6 N1 sing N N 68 5GP N1 C2 sing N N 69 5GP N1 HN1 sing N N 70 5GP C2 N2 sing N N 71 5GP C2 N3 doub N N 72 5GP N2 HN21 sing N N 73 5GP N2 HN22 sing N N 74 5GP N3 C4 sing N N 75 A OP3 P sing N N 76 A OP3 HOP3 sing N N 77 A P OP1 doub N N 78 A P OP2 sing N N 79 A P "O5'" sing N N 80 A OP2 HOP2 sing N N 81 A "O5'" "C5'" sing N N 82 A "C5'" "C4'" sing N N 83 A "C5'" "H5'" sing N N 84 A "C5'" "H5''" sing N N 85 A "C4'" "O4'" sing N N 86 A "C4'" "C3'" sing N N 87 A "C4'" "H4'" sing N N 88 A "O4'" "C1'" sing N N 89 A "C3'" "O3'" sing N N 90 A "C3'" "C2'" sing N N 91 A "C3'" "H3'" sing N N 92 A "O3'" "HO3'" sing N N 93 A "C2'" "O2'" sing N N 94 A "C2'" "C1'" sing N N 95 A "C2'" "H2'" sing N N 96 A "O2'" "HO2'" sing N N 97 A "C1'" N9 sing N N 98 A "C1'" "H1'" sing N N 99 A N9 C8 sing Y N 100 A N9 C4 sing Y N 101 A C8 N7 doub Y N 102 A C8 H8 sing N N 103 A N7 C5 sing Y N 104 A C5 C6 sing Y N 105 A C5 C4 doub Y N 106 A C6 N6 sing N N 107 A C6 N1 doub Y N 108 A N6 H61 sing N N 109 A N6 H62 sing N N 110 A N1 C2 sing Y N 111 A C2 N3 doub Y N 112 A C2 H2 sing N N 113 A N3 C4 sing Y N 114 A1B9T OP1 P doub N N 115 A1B9T P OP2 sing N N 116 A1B9T P "O5'" sing N N 117 A1B9T "O5'" "C5'" sing N N 118 A1B9T "C5'" "C4'" sing N N 119 A1B9T "C1'" "C2'" sing N N 120 A1B9T "C1'" N1 sing N N 121 A1B9T N2 "C4'" sing N N 122 A1B9T N2 "C2'" sing N N 123 A1B9T "C4'" "C3'" sing N N 124 A1B9T "C2'" "O2'" doub N N 125 A1B9T O2 C2 doub N N 126 A1B9T N1 C2 sing N N 127 A1B9T N1 C6 sing N N 128 A1B9T "C3'" "O3'" sing N N 129 A1B9T C2 N3 sing N N 130 A1B9T C6 C5 doub N N 131 A1B9T N3 C4 sing N N 132 A1B9T C5 C4 sing N N 133 A1B9T C5 C7 sing N N 134 A1B9T C4 O4 doub N N 135 A1B9T N2 H2 sing N N 136 A1B9T "C5'" H52 sing N N 137 A1B9T "C5'" H51 sing N N 138 A1B9T N3 H3 sing N N 139 A1B9T "O3'" H1 sing N N 140 A1B9T OP2 H5 sing N N 141 A1B9T P OP3 sing N N 142 A1B9T OP3 HP3 sing N N 143 A1B9T C6 H4 sing N N 144 A1B9T C7 H6 sing N N 145 A1B9T C7 H7 sing N N 146 A1B9T C7 H8 sing N N 147 A1B9T "C1'" H9 sing N N 148 A1B9T "C1'" H10 sing N N 149 A1B9T "C3'" H11 sing N N 150 A1B9T "C3'" H12 sing N N 151 A1B9T "C4'" H13 sing N N 152 BRU N1 C2 sing N N 153 BRU N1 C6 sing N N 154 BRU N1 "C1'" sing N N 155 BRU C2 N3 sing N N 156 BRU C2 O2 doub N N 157 BRU N3 C4 sing N N 158 BRU N3 HN3 sing N N 159 BRU C4 C5 sing N N 160 BRU C4 O4 doub N N 161 BRU C5 C6 doub N N 162 BRU C5 BR sing N N 163 BRU C6 H6 sing N N 164 BRU "C1'" "C2'" sing N N 165 BRU "C1'" "O4'" sing N N 166 BRU "C1'" "H1'" sing N N 167 BRU "C2'" "C3'" sing N N 168 BRU "C2'" "H2'" sing N N 169 BRU "C2'" "H2''" sing N N 170 BRU "C3'" "C4'" sing N N 171 BRU "C3'" "O3'" sing N N 172 BRU "C3'" "H3'" sing N N 173 BRU "C4'" "O4'" sing N N 174 BRU "C4'" "C5'" sing N N 175 BRU "C4'" "H4'" sing N N 176 BRU "O3'" "HO3'" sing N N 177 BRU "C5'" "O5'" sing N N 178 BRU "C5'" "H5'" sing N N 179 BRU "C5'" "H5''" sing N N 180 BRU "O5'" P sing N N 181 BRU P OP1 doub N N 182 BRU P OP2 sing N N 183 BRU P OP3 sing N N 184 BRU OP2 HOP2 sing N N 185 BRU OP3 HOP3 sing N N 186 C OP3 P sing N N 187 C OP3 HOP3 sing N N 188 C P OP1 doub N N 189 C P OP2 sing N N 190 C P "O5'" sing N N 191 C OP2 HOP2 sing N N 192 C "O5'" "C5'" sing N N 193 C "C5'" "C4'" sing N N 194 C "C5'" "H5'" sing N N 195 C "C5'" "H5''" sing N N 196 C "C4'" "O4'" sing N N 197 C "C4'" "C3'" sing N N 198 C "C4'" "H4'" sing N N 199 C "O4'" "C1'" sing N N 200 C "C3'" "O3'" sing N N 201 C "C3'" "C2'" sing N N 202 C "C3'" "H3'" sing N N 203 C "O3'" "HO3'" sing N N 204 C "C2'" "O2'" sing N N 205 C "C2'" "C1'" sing N N 206 C "C2'" "H2'" sing N N 207 C "O2'" "HO2'" sing N N 208 C "C1'" N1 sing N N 209 C "C1'" "H1'" sing N N 210 C N1 C2 sing N N 211 C N1 C6 sing N N 212 C C2 O2 doub N N 213 C C2 N3 sing N N 214 C N3 C4 doub N N 215 C C4 N4 sing N N 216 C C4 C5 sing N N 217 C N4 H41 sing N N 218 C N4 H42 sing N N 219 C C5 C6 doub N N 220 C C5 H5 sing N N 221 C C6 H6 sing N N 222 C5P O3P P sing N N 223 C5P O3P HOP3 sing N N 224 C5P P O1P doub N N 225 C5P P O2P sing N N 226 C5P P "O5'" sing N N 227 C5P O2P HOP2 sing N N 228 C5P "O5'" "C5'" sing N N 229 C5P "C5'" "C4'" sing N N 230 C5P "C5'" "H5'1" sing N N 231 C5P "C5'" "H5'2" sing N N 232 C5P "C4'" "O4'" sing N N 233 C5P "C4'" "C3'" sing N N 234 C5P "C4'" "H4'" sing N N 235 C5P "O4'" "C1'" sing N N 236 C5P "C3'" "O3'" sing N N 237 C5P "C3'" "C2'" sing N N 238 C5P "C3'" "H3'" sing N N 239 C5P "O3'" "HO3'" sing N N 240 C5P "C2'" "O2'" sing N N 241 C5P "C2'" "C1'" sing N N 242 C5P "C2'" "H2'1" sing N N 243 C5P "O2'" "HO2'" sing N N 244 C5P "C1'" N1 sing N N 245 C5P "C1'" "H1'" sing N N 246 C5P N1 C2 sing N N 247 C5P N1 C6 sing N N 248 C5P C2 N3 sing N N 249 C5P C2 O2 doub N N 250 C5P N3 C4 doub N N 251 C5P C4 C5 sing N N 252 C5P C4 N4 sing N N 253 C5P C5 C6 doub N N 254 C5P C5 H5 sing N N 255 C5P C6 H6 sing N N 256 C5P N4 HN41 sing N N 257 C5P N4 HN42 sing N N 258 G OP3 P sing N N 259 G OP3 HOP3 sing N N 260 G P OP1 doub N N 261 G P OP2 sing N N 262 G P "O5'" sing N N 263 G OP2 HOP2 sing N N 264 G "O5'" "C5'" sing N N 265 G "C5'" "C4'" sing N N 266 G "C5'" "H5'" sing N N 267 G "C5'" "H5''" sing N N 268 G "C4'" "O4'" sing N N 269 G "C4'" "C3'" sing N N 270 G "C4'" "H4'" sing N N 271 G "O4'" "C1'" sing N N 272 G "C3'" "O3'" sing N N 273 G "C3'" "C2'" sing N N 274 G "C3'" "H3'" sing N N 275 G "O3'" "HO3'" sing N N 276 G "C2'" "O2'" sing N N 277 G "C2'" "C1'" sing N N 278 G "C2'" "H2'" sing N N 279 G "O2'" "HO2'" sing N N 280 G "C1'" N9 sing N N 281 G "C1'" "H1'" sing N N 282 G N9 C8 sing Y N 283 G N9 C4 sing Y N 284 G C8 N7 doub Y N 285 G C8 H8 sing N N 286 G N7 C5 sing Y N 287 G C5 C6 sing N N 288 G C5 C4 doub Y N 289 G C6 O6 doub N N 290 G C6 N1 sing N N 291 G N1 C2 sing N N 292 G N1 H1 sing N N 293 G C2 N2 sing N N 294 G C2 N3 doub N N 295 G N2 H21 sing N N 296 G N2 H22 sing N N 297 G N3 C4 sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 TSN O1 N1 sing N N 301 TSN O1 HO1 sing N N 302 TSN O2 C13 doub N N 303 TSN O3 C7 doub N N 304 TSN N1 C13 sing N N 305 TSN N1 HN1 sing N N 306 TSN N2 C4 sing N N 307 TSN N2 C17 sing N N 308 TSN N2 C16 sing N N 309 TSN C1 C2 doub Y N 310 TSN C1 C6 sing Y N 311 TSN C1 C7 sing N N 312 TSN C2 C3 sing Y N 313 TSN C2 H21 sing N N 314 TSN C3 C4 doub Y N 315 TSN C3 H31 sing N N 316 TSN C4 C5 sing Y N 317 TSN C5 C6 doub Y N 318 TSN C5 H51 sing N N 319 TSN C6 H61 sing N N 320 TSN C7 C8 sing N N 321 TSN C8 C9 sing N N 322 TSN C8 C14 sing N N 323 TSN C8 H8 sing N N 324 TSN C9 C10 doub N E 325 TSN C9 H9 sing N N 326 TSN C10 C11 sing N N 327 TSN C10 C15 sing N N 328 TSN C11 C12 doub N E 329 TSN C11 H111 sing N N 330 TSN C12 C13 sing N N 331 TSN C12 H121 sing N N 332 TSN C14 H141 sing N N 333 TSN C14 H142 sing N N 334 TSN C14 H143 sing N N 335 TSN C15 H151 sing N N 336 TSN C15 H152 sing N N 337 TSN C15 H153 sing N N 338 TSN C17 H171 sing N N 339 TSN C17 H172 sing N N 340 TSN C17 H173 sing N N 341 TSN C16 H161 sing N N 342 TSN C16 H162 sing N N 343 TSN C16 H163 sing N N 344 # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _space_group.name_H-M_alt 'P 1' _space_group.name_Hall 'P 1' _space_group.IT_number 1 _space_group.crystal_system triclinic _space_group.id 1 # _atom_sites.entry_id 9O47 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.041630 _atom_sites.fract_transf_matrix[1][2] 0.016470 _atom_sites.fract_transf_matrix[1][3] 0.017078 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.036848 _atom_sites.fract_transf_matrix[2][3] 0.019156 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.038462 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source BR ? ? 25.79822 9.11301 ? ? 1.35700 25.34896 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #