HEADER OXIDOREDUCTASE 08-APR-25 9O4T TITLE RT XFEL STRUCTURE OF SOYBEAN LIPOXYGENASE-1 IN LARGE UNIT-CELL COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEED LINOLEATE 13S-LIPOXYGENASE-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LIPOXYGENASE-1,L-1; COMPND 5 EC: 1.13.11.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 GENE: LOX1.1, LOX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIPOXYGENASE, HYDRATED, SOLVENT, DYNAMICS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.WOLFF,M.C.THOMPSON REVDAT 1 08-APR-26 9O4T 0 JRNL AUTH A.M.WOLFF,D.W.PALEY,A.H.FOLLMER,I.D.YOUNG,A.DEARY, JRNL AUTH 2 J.HIRSCHMAN,A.HORANI,R.LEMONS,S.LISOVA,R.L.MCANELLY, JRNL AUTH 3 D.MORELAND,S.T.M.MOUS,A.OHLER,J.M.RODRIGUEZ,S.RUSSI, JRNL AUTH 4 R.G.SIERRA,S.CARBAJO,F.P.POITEVIN,J.P.KLINMAN,N.K.SAUTER, JRNL AUTH 5 M.A.WILSON,A.R.OFFENBACHER,A.S.BREWSTER,M.C.THOMPSON JRNL TITL HYDRATION OF SOYBEAN LIPOXYGENASE CRYSTALS IS COUPLED TO JRNL TITL 2 INTRAMOLECULAR DYNAMICS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 65618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.5900 - 4.6800 1.00 4633 153 0.1848 0.2116 REMARK 3 2 4.6800 - 3.7200 1.00 4574 149 0.1684 0.1694 REMARK 3 3 3.7200 - 3.2500 1.00 4569 145 0.1980 0.2309 REMARK 3 4 3.2500 - 2.9600 1.00 4557 137 0.2163 0.2468 REMARK 3 5 2.9600 - 2.7500 1.00 4547 141 0.2450 0.2755 REMARK 3 6 2.7500 - 2.5900 1.00 4553 150 0.2423 0.2709 REMARK 3 7 2.5900 - 2.4600 1.00 4530 140 0.2366 0.2778 REMARK 3 8 2.4600 - 2.3500 1.00 4539 144 0.2498 0.2657 REMARK 3 9 2.3500 - 2.2600 1.00 4555 138 0.2543 0.2825 REMARK 3 10 2.2600 - 2.1800 1.00 4491 151 0.2674 0.3013 REMARK 3 11 2.1800 - 2.1100 1.00 4546 144 0.2623 0.2738 REMARK 3 12 2.1100 - 2.0500 1.00 4553 143 0.2806 0.3095 REMARK 3 13 2.0500 - 2.0000 1.00 4506 140 0.2933 0.3109 REMARK 3 14 2.0000 - 1.9500 0.99 4453 137 0.3128 0.3639 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.265 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.801 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6617 REMARK 3 ANGLE : 0.542 9060 REMARK 3 CHIRALITY : 0.041 1000 REMARK 3 PLANARITY : 0.006 1187 REMARK 3 DIHEDRAL : 11.962 2407 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.0233 -4.1472 -12.6474 REMARK 3 T TENSOR REMARK 3 T11: 0.6294 T22: 0.9771 REMARK 3 T33: 1.5348 T12: 0.0087 REMARK 3 T13: -0.0565 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 3.8714 L22: 0.7048 REMARK 3 L33: 0.3026 L12: 0.7679 REMARK 3 L13: -0.6062 L23: 0.3266 REMARK 3 S TENSOR REMARK 3 S11: 0.0456 S12: 0.2052 S13: -0.0828 REMARK 3 S21: 0.0082 S22: -0.1489 S23: 0.8135 REMARK 3 S31: -0.0977 S32: -0.5255 S33: 0.0242 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 587 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1071 0.0169 -14.6826 REMARK 3 T TENSOR REMARK 3 T11: 0.4554 T22: 0.2666 REMARK 3 T33: 0.2386 T12: 0.0191 REMARK 3 T13: -0.1642 T23: 0.0372 REMARK 3 L TENSOR REMARK 3 L11: 1.7425 L22: 3.8725 REMARK 3 L33: 1.1609 L12: -0.4657 REMARK 3 L13: -0.3882 L23: 0.6647 REMARK 3 S TENSOR REMARK 3 S11: 0.0775 S12: 0.2638 S13: 0.0738 REMARK 3 S21: -0.8957 S22: -0.1243 S23: 0.7301 REMARK 3 S31: -0.1850 S32: -0.0903 S33: 0.0243 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 588 THROUGH 839 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8444 -12.7477 -10.7996 REMARK 3 T TENSOR REMARK 3 T11: 0.2656 T22: 0.2538 REMARK 3 T33: 0.5888 T12: -0.0141 REMARK 3 T13: -0.1434 T23: -0.0900 REMARK 3 L TENSOR REMARK 3 L11: 1.6261 L22: 3.5725 REMARK 3 L33: 1.7066 L12: -0.6294 REMARK 3 L13: -0.6553 L23: 0.6618 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: 0.2147 S13: -0.4509 REMARK 3 S21: -0.3879 S22: -0.2299 S23: 1.3470 REMARK 3 S31: 0.1603 S32: -0.2745 S33: -0.1789 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9O4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-25. REMARK 100 THE DEPOSITION ID IS D_1000294865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : MFX REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE MFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.31 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX340-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : CCTBX.XFEL.MERGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65618 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 19.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 77.59 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4160 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.19 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.21.1_5286 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IN A 2 ML EPPENDORF TUBE, 0.5 ML OF REMARK 280 PRECIPITANT (0.4M NAOAC PH=5.5, 16% PEG-3350) AND 0.5 ML OF SLO REMARK 280 (10 MG/ML IN 50 MM NAOAC, PH=5.0) WAS COMBINED TOGETHER WITH ~ REMARK 280 10UL OF SEED STOCK (SEE 2.2.1.) BEING ADDED TO THE TUBE CAP REMARK 280 PRIOR TO MIXING BY INVERSION. THE TUBE WAS THEN PLACED ON A REMARK 280 THERMO FISHER TUBER REVOLVER ROTATOR, SET TO 30 RPM. SAMPLES REMARK 280 WERE LEFT TO MIX OVERNIGHT. SUBSEQUENTLY, SAMPLES WERE MIXED IN REMARK 280 A ~1:1 RATIO WITH 18% HYDROXYETHYLCELLULOSE (SIGMA-ALDRICH PN- REMARK 280 09368) DISSOLVED IN SLO PRECIPITANT (0.4M NAOAC PH=5.5, 16% PEG- REMARK 280 3350), PH 5.5, BATCH MODE, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.26800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 HIS A 6 REMARK 465 GLU A 21 REMARK 465 VAL A 22 REMARK 465 ASN A 23 REMARK 465 PRO A 24 REMARK 465 ASP A 25 REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 ALA A 28 REMARK 465 VAL A 29 REMARK 465 ASP A 30 REMARK 465 ASP A 51 REMARK 465 ALA A 52 REMARK 465 HIS A 53 REMARK 465 GLY A 54 REMARK 465 LYS A 55 REMARK 465 GLY A 56 REMARK 465 LYS A 57 REMARK 465 VAL A 58 REMARK 465 GLY A 59 REMARK 465 LYS A 60 REMARK 465 GLY A 95 REMARK 465 ALA A 116 REMARK 465 ILE A 117 REMARK 465 SER A 118 REMARK 465 ASN A 119 REMARK 465 GLN A 120 REMARK 465 LYS A 135 REMARK 465 LEU A 136 REMARK 465 TYR A 137 REMARK 465 LYS A 138 REMARK 465 ALA A 456 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 ILE A 8 CG1 CG2 CD1 REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 THR A 11 OG1 CG2 REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 ASN A 18 CG OD1 ND2 REMARK 470 ASN A 31 CG OD1 ND2 REMARK 470 LEU A 32 CG CD1 CD2 REMARK 470 ASN A 33 CG OD1 ND2 REMARK 470 PHE A 35 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 42 CG CD1 CD2 REMARK 470 LEU A 44 CG CD1 CD2 REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 ASP A 61 CG OD1 OD2 REMARK 470 LEU A 64 CG CD1 CD2 REMARK 470 ILE A 67 CG1 CG2 CD1 REMARK 470 THR A 73 OG1 CG2 REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 GLN A 104 CG CD OE1 NE2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 LEU A 249 CG CD1 CD2 REMARK 470 GLU A 363 CG CD OE1 OE2 REMARK 470 HIS A 454 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 455 OG REMARK 470 ASP A 458 CG OD1 OD2 REMARK 470 LEU A 459 CG CD1 CD2 REMARK 470 SER A 460 OG REMARK 470 LYS A 471 CG CD CE NZ REMARK 470 ARG A 635 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 639 CG1 CG2 REMARK 470 LYS A 640 CG CD CE NZ REMARK 470 LYS A 650 CG CD CE NZ REMARK 470 LYS A 655 CG CD CE NZ REMARK 470 LYS A 661 CG CD CE NZ REMARK 470 GLN A 670 CG CD OE1 NE2 REMARK 470 LYS A 777 CG CD CE NZ REMARK 470 LYS A 784 CG CD CE NZ REMARK 470 LYS A 788 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 217 O HOH A 1001 1.91 REMARK 500 O HOH A 1009 O HOH A 1150 1.92 REMARK 500 O LYS A 233 O HOH A 1002 1.93 REMARK 500 O HOH A 1127 O HOH A 1258 1.95 REMARK 500 O ILE A 142 O HOH A 1003 2.00 REMARK 500 O ASP A 659 O HOH A 1004 2.01 REMARK 500 OG SER A 209 O HOH A 1005 2.09 REMARK 500 O HOH A 1028 O HOH A 1143 2.09 REMARK 500 O HOH A 1176 O HOH A 1188 2.13 REMARK 500 O HOH A 1010 O HOH A 1011 2.16 REMARK 500 OG SER A 425 O HOH A 1006 2.17 REMARK 500 O VAL A 237 O HOH A 1007 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 38 38.55 -89.65 REMARK 500 THR A 48 -30.14 -137.32 REMARK 500 LEU A 71 109.68 -47.56 REMARK 500 CYS A 127 -73.43 -99.46 REMARK 500 ASN A 146 34.55 -80.24 REMARK 500 GLU A 294 -92.37 -105.32 REMARK 500 VAL A 312 -61.82 72.62 REMARK 500 VAL A 312 -61.82 74.43 REMARK 500 GLN A 322 -61.37 -129.56 REMARK 500 ALA A 352 21.02 -142.06 REMARK 500 HIS A 499 -71.45 -98.85 REMARK 500 SER A 560 -125.45 57.88 REMARK 500 HIS A 657 43.26 -108.16 REMARK 500 SER A 687 -79.87 -106.74 REMARK 500 ASN A 729 87.41 -166.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TRP A 665 10.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 499 NE2 REMARK 620 2 HIS A 504 NE2 75.2 REMARK 620 3 HIS A 690 NE2 90.0 96.3 REMARK 620 4 ILE A 839 OXT 169.0 104.3 100.9 REMARK 620 5 HOH A1058 O 85.6 110.3 150.8 84.3 REMARK 620 N 1 2 3 4 DBREF 9O4T A 1 839 UNP P08170 LOX1_SOYBN 1 839 SEQADV 9O4T GLU A 160 UNP P08170 SER 160 CONFLICT SEQRES 1 A 839 MET PHE SER ALA GLY HIS LYS ILE LYS GLY THR VAL VAL SEQRES 2 A 839 LEU MET PRO LYS ASN GLU LEU GLU VAL ASN PRO ASP GLY SEQRES 3 A 839 SER ALA VAL ASP ASN LEU ASN ALA PHE LEU GLY ARG SER SEQRES 4 A 839 VAL SER LEU GLN LEU ILE SER ALA THR LYS ALA ASP ALA SEQRES 5 A 839 HIS GLY LYS GLY LYS VAL GLY LYS ASP THR PHE LEU GLU SEQRES 6 A 839 GLY ILE ASN THR SER LEU PRO THR LEU GLY ALA GLY GLU SEQRES 7 A 839 SER ALA PHE ASN ILE HIS PHE GLU TRP ASP GLY SER MET SEQRES 8 A 839 GLY ILE PRO GLY ALA PHE TYR ILE LYS ASN TYR MET GLN SEQRES 9 A 839 VAL GLU PHE PHE LEU LYS SER LEU THR LEU GLU ALA ILE SEQRES 10 A 839 SER ASN GLN GLY THR ILE ARG PHE VAL CYS ASN SER TRP SEQRES 11 A 839 VAL TYR ASN THR LYS LEU TYR LYS SER VAL ARG ILE PHE SEQRES 12 A 839 PHE ALA ASN HIS THR TYR VAL PRO SER GLU THR PRO ALA SEQRES 13 A 839 PRO LEU VAL GLU TYR ARG GLU GLU GLU LEU LYS SER LEU SEQRES 14 A 839 ARG GLY ASN GLY THR GLY GLU ARG LYS GLU TYR ASP ARG SEQRES 15 A 839 ILE TYR ASP TYR ASP VAL TYR ASN ASP LEU GLY ASN PRO SEQRES 16 A 839 ASP LYS SER GLU LYS LEU ALA ARG PRO VAL LEU GLY GLY SEQRES 17 A 839 SER SER THR PHE PRO TYR PRO ARG ARG GLY ARG THR GLY SEQRES 18 A 839 ARG GLY PRO THR VAL THR ASP PRO ASN THR GLU LYS GLN SEQRES 19 A 839 GLY GLU VAL PHE TYR VAL PRO ARG ASP GLU ASN LEU GLY SEQRES 20 A 839 HIS LEU LYS SER LYS ASP ALA LEU GLU ILE GLY THR LYS SEQRES 21 A 839 SER LEU SER GLN ILE VAL GLN PRO ALA PHE GLU SER ALA SEQRES 22 A 839 PHE ASP LEU LYS SER THR PRO ILE GLU PHE HIS SER PHE SEQRES 23 A 839 GLN ASP VAL HIS ASP LEU TYR GLU GLY GLY ILE LYS LEU SEQRES 24 A 839 PRO ARG ASP VAL ILE SER THR ILE ILE PRO LEU PRO VAL SEQRES 25 A 839 ILE LYS GLU LEU TYR ARG THR ASP GLY GLN HIS ILE LEU SEQRES 26 A 839 LYS PHE PRO GLN PRO HIS VAL VAL GLN VAL SER GLN SER SEQRES 27 A 839 ALA TRP MET THR ASP GLU GLU PHE ALA ARG GLU MET ILE SEQRES 28 A 839 ALA GLY VAL ASN PRO CYS VAL ILE ARG GLY LEU GLU GLU SEQRES 29 A 839 PHE PRO PRO LYS SER ASN LEU ASP PRO ALA ILE TYR GLY SEQRES 30 A 839 ASP GLN SER SER LYS ILE THR ALA ASP SER LEU ASP LEU SEQRES 31 A 839 ASP GLY TYR THR MET ASP GLU ALA LEU GLY SER ARG ARG SEQRES 32 A 839 LEU PHE MET LEU ASP TYR HIS ASP ILE PHE MET PRO TYR SEQRES 33 A 839 VAL ARG GLN ILE ASN GLN LEU ASN SER ALA LYS THR TYR SEQRES 34 A 839 ALA THR ARG THR ILE LEU PHE LEU ARG GLU ASP GLY THR SEQRES 35 A 839 LEU LYS PRO VAL ALA ILE GLU LEU SER LEU PRO HIS SER SEQRES 36 A 839 ALA GLY ASP LEU SER ALA ALA VAL SER GLN VAL VAL LEU SEQRES 37 A 839 PRO ALA LYS GLU GLY VAL GLU SER THR ILE TRP LEU LEU SEQRES 38 A 839 ALA LYS ALA TYR VAL ILE VAL ASN ASP SER CYS TYR HIS SEQRES 39 A 839 GLN LEU MET SER HIS TRP LEU ASN THR HIS ALA ALA MET SEQRES 40 A 839 GLU PRO PHE VAL ILE ALA THR HIS ARG HIS LEU SER VAL SEQRES 41 A 839 LEU HIS PRO ILE TYR LYS LEU LEU THR PRO HIS TYR ARG SEQRES 42 A 839 ASN ASN MET ASN ILE ASN ALA LEU ALA ARG GLN SER LEU SEQRES 43 A 839 ILE ASN ALA ASN GLY ILE ILE GLU THR THR PHE LEU PRO SEQRES 44 A 839 SER LYS TYR SER VAL GLU MET SER SER ALA VAL TYR LYS SEQRES 45 A 839 ASN TRP VAL PHE THR ASP GLN ALA LEU PRO ALA ASP LEU SEQRES 46 A 839 ILE LYS ARG GLY VAL ALA ILE LYS ASP PRO SER THR PRO SEQRES 47 A 839 HIS GLY VAL ARG LEU LEU ILE GLU ASP TYR PRO TYR ALA SEQRES 48 A 839 ALA ASP GLY LEU GLU ILE TRP ALA ALA ILE LYS THR TRP SEQRES 49 A 839 VAL GLN GLU TYR VAL PRO LEU TYR TYR ALA ARG ASP ASP SEQRES 50 A 839 ASP VAL LYS ASN ASP SER GLU LEU GLN HIS TRP TRP LYS SEQRES 51 A 839 GLU ALA VAL GLU LYS GLY HIS GLY ASP LEU LYS ASP LYS SEQRES 52 A 839 PRO TRP TRP PRO LYS LEU GLN THR LEU GLU ASP LEU VAL SEQRES 53 A 839 GLU VAL CYS LEU ILE ILE ILE TRP ILE ALA SER ALA LEU SEQRES 54 A 839 HIS ALA ALA VAL ASN PHE GLY GLN TYR PRO TYR GLY GLY SEQRES 55 A 839 LEU ILE MET ASN ARG PRO THR ALA SER ARG ARG LEU LEU SEQRES 56 A 839 PRO GLU LYS GLY THR PRO GLU TYR GLU GLU MET ILE ASN SEQRES 57 A 839 ASN HIS GLU LYS ALA TYR LEU ARG THR ILE THR SER LYS SEQRES 58 A 839 LEU PRO THR LEU ILE SER LEU SER VAL ILE GLU ILE LEU SEQRES 59 A 839 SER THR HIS ALA SER ASP GLU VAL TYR LEU GLY GLN ARG SEQRES 60 A 839 ASP ASN PRO HIS TRP THR SER ASP SER LYS ALA LEU GLN SEQRES 61 A 839 ALA PHE GLN LYS PHE GLY ASN LYS LEU LYS GLU ILE GLU SEQRES 62 A 839 GLU LYS LEU VAL ARG ARG ASN ASN ASP PRO SER LEU GLN SEQRES 63 A 839 GLY ASN ARG LEU GLY PRO VAL GLN LEU PRO TYR THR LEU SEQRES 64 A 839 LEU TYR PRO SER SER GLU GLU GLY LEU THR PHE ARG GLY SEQRES 65 A 839 ILE PRO ASN SER ILE SER ILE HET FE A 901 1 HETNAM FE FE (III) ION FORMUL 2 FE FE 3+ FORMUL 3 HOH *270(H2 O) HELIX 1 AA1 PRO A 16 LEU A 20 5 5 HELIX 2 AA2 ASN A 31 ARG A 38 5 8 HELIX 3 AA3 ASP A 88 GLY A 92 5 5 HELIX 4 AA4 VAL A 150 THR A 154 5 5 HELIX 5 AA5 PRO A 155 PRO A 157 5 3 HELIX 6 AA6 LEU A 158 GLY A 171 1 14 HELIX 7 AA7 SER A 198 ALA A 202 5 5 HELIX 8 AA8 PRO A 241 ASN A 245 5 5 HELIX 9 AA9 LYS A 250 GLU A 256 5 7 HELIX 10 AB1 ILE A 257 ILE A 265 1 9 HELIX 11 AB2 ILE A 265 LEU A 276 1 12 HELIX 12 AB3 SER A 285 ASP A 291 1 7 HELIX 13 AB4 LEU A 292 GLU A 294 5 3 HELIX 14 AB5 PRO A 300 ILE A 308 1 9 HELIX 15 AB6 VAL A 312 LEU A 316 5 5 HELIX 16 AB7 PRO A 330 GLN A 334 5 5 HELIX 17 AB8 SER A 338 MET A 341 5 4 HELIX 18 AB9 THR A 342 GLY A 353 1 12 HELIX 19 AC1 ASP A 372 GLY A 377 1 6 HELIX 20 AC2 THR A 384 LEU A 388 5 5 HELIX 21 AC3 THR A 394 SER A 401 1 8 HELIX 22 AC4 TYR A 409 GLN A 422 1 14 HELIX 23 AC5 GLY A 473 MET A 497 1 25 HELIX 24 AC6 THR A 503 LEU A 518 1 16 HELIX 25 AC7 HIS A 522 THR A 529 1 8 HELIX 26 AC8 PRO A 530 ARG A 533 5 4 HELIX 27 AC9 ASN A 534 LEU A 546 1 13 HELIX 28 AD1 GLY A 551 PHE A 557 1 7 HELIX 29 AD2 PRO A 559 LYS A 561 5 3 HELIX 30 AD3 TYR A 562 LYS A 572 1 11 HELIX 31 AD4 ASN A 573 TRP A 574 5 2 HELIX 32 AD5 VAL A 575 GLN A 579 5 5 HELIX 33 AD6 ALA A 580 ARG A 588 1 9 HELIX 34 AD7 TYR A 608 VAL A 629 1 22 HELIX 35 AD8 PRO A 630 TYR A 632 5 3 HELIX 36 AD9 ARG A 635 ASN A 641 1 7 HELIX 37 AE1 ASP A 642 LYS A 655 1 14 HELIX 38 AE2 HIS A 657 LYS A 661 5 5 HELIX 39 AE3 THR A 671 SER A 687 1 17 HELIX 40 AE4 SER A 687 PHE A 695 1 9 HELIX 41 AE5 GLY A 696 GLY A 702 1 7 HELIX 42 AE6 THR A 720 ASN A 729 1 10 HELIX 43 AE7 ASN A 729 ILE A 738 1 10 HELIX 44 AE8 SER A 740 SER A 755 1 16 HELIX 45 AE9 ASP A 775 ASN A 801 1 27 HELIX 46 AF1 ASP A 802 SER A 804 5 3 HELIX 47 AF2 LEU A 805 LEU A 810 1 6 SHEET 1 AA1 5 GLY A 66 ILE A 67 0 SHEET 2 AA1 5 SER A 79 PHE A 85 -1 O ASN A 82 N GLY A 66 SHEET 3 AA1 5 ILE A 8 MET A 15 -1 N LEU A 14 O SER A 79 SHEET 4 AA1 5 PHE A 107 GLU A 115 -1 O PHE A 108 N MET A 15 SHEET 5 AA1 5 ILE A 123 VAL A 131 -1 O VAL A 131 N PHE A 107 SHEET 1 AA2 3 VAL A 40 LEU A 44 0 SHEET 2 AA2 3 PHE A 97 ASN A 101 -1 O LYS A 100 N SER A 41 SHEET 3 AA2 3 ARG A 141 PHE A 143 -1 O PHE A 143 N PHE A 97 SHEET 1 AA3 2 TYR A 186 ASP A 187 0 SHEET 2 AA3 2 ARG A 217 GLY A 218 -1 O ARG A 217 N ASP A 187 SHEET 1 AA4 3 ILE A 297 LYS A 298 0 SHEET 2 AA4 3 ILE A 324 LYS A 326 -1 O LEU A 325 N ILE A 297 SHEET 3 AA4 3 ARG A 318 THR A 319 -1 N ARG A 318 O LYS A 326 SHEET 1 AA5 5 ARG A 360 GLY A 361 0 SHEET 2 AA5 5 LEU A 404 ASP A 408 -1 O MET A 406 N ARG A 360 SHEET 3 AA5 5 ALA A 430 LEU A 437 -1 O LEU A 435 N PHE A 405 SHEET 4 AA5 5 LEU A 443 SER A 451 -1 O GLU A 449 N ARG A 432 SHEET 5 AA5 5 GLN A 465 VAL A 467 -1 O VAL A 467 N ILE A 448 SHEET 1 AA6 2 ALA A 591 LYS A 593 0 SHEET 2 AA6 2 VAL A 601 LEU A 603 -1 O ARG A 602 N ILE A 592 LINK NE2 HIS A 499 FE FE A 901 1555 1555 2.43 LINK NE2 HIS A 504 FE FE A 901 1555 1555 2.16 LINK NE2 HIS A 690 FE FE A 901 1555 1555 2.17 LINK OXT ILE A 839 FE FE A 901 1555 1555 2.21 LINK FE FE A 901 O HOH A1058 1555 1555 2.18 CISPEP 1 PHE A 365 PRO A 366 0 -1.13 CRYST1 96.031 94.536 50.529 90.00 91.18 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010413 0.000000 0.000215 0.00000 SCALE2 0.000000 0.010578 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019795 0.00000 CONECT 709612618 CONECT 718412618 CONECT1016012618 CONECT1260512618 CONECT12618 7096 71841016012605 CONECT1261812676 CONECT1267612618 MASTER 419 0 1 47 20 0 0 6 6529 1 7 65 END