data_9O7G # _entry.id 9O7G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.414 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9O7G pdb_00009o7g 10.2210/pdb9o7g/pdb WWPDB D_1000295019 ? ? EMDB EMD-70198 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-05-13 ? 2 'EM metadata' 1 0 2026-05-13 ? 3 'Half map' 1 0 2026-05-13 1 4 'Half map' 1 0 2026-05-13 2 5 Image 1 0 2026-05-13 ? 6 'Primary map' 1 0 2026-05-13 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Half map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 Image repository 'Initial release' ? ? 6 6 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9O7G _pdbx_database_status.recvd_initial_deposition_date 2025-04-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'CHIP E3 ligase U-box-Fab H1 epitope focused refinement' _pdbx_database_related.db_id EMD-70198 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email daniel.southworth@ucsf.edu _pdbx_contact_author.name_first Daniel _pdbx_contact_author.name_last Southworth _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7108-9389 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Unnikrishnan, A.' 1 0000-0002-6668-8659 'Southworth, D.' 2 0000-0001-7108-9389 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structures of Fab-stabilized CHIP reveal a conformational switch important in E3 ligase and chaperone functions' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Unnikrishnan, A.' 1 0000-0002-6668-8659 primary 'Southworth, D.' 2 0000-0001-7108-9389 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'H1 Fab light chain' 13265.685 1 ? ? ? ? 2 polymer man 'E3 ubiquitin-protein ligase CHIP' 8871.005 1 2.3.2.27 ? ? ? 3 polymer man 'H1 Fab heavy chain' 11385.568 1 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name ;Antigen NY-CO-7,CLL-associated antigen KW-8,Carboxy terminus of Hsp70-interacting protein,RING-type E3 ubiquitin transferase CHIP,STIP1 homology and U box-containing protein 1 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;VQLVQSGSEVKKPGASVKVSCKASGYTFTNYGISWVRQAPGQGLEWMGWISAYNGNTNYAQNFQGRVTMTTDTSTKTAYM ELRSLRSDDTAVYFCARSGYSGYDNNLGAFDIWGQGTMVTV ; ;VQLVQSGSEVKKPGASVKVSCKASGYTFTNYGISWVRQAPGQGLEWMGWISAYNGNTNYAQNFQGRVTMTTDTSTKTAYM ELRSLRSDDTAVYFCARSGYSGYDNNLGAFDIWGQGTMVTV ; C ? 2 'polypeptide(L)' no no DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVED DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVED B ? 3 'polypeptide(L)' no no ;SVVTQPPSVSAAPGQKVTISCSGTSSNIGNSYVTWYQQLPGAAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQT GDEADYYCATWDSSLTAGRVFGGGTRLTVL ; ;SVVTQPPSVSAAPGQKVTISCSGTSSNIGNSYVTWYQQLPGAAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQT GDEADYYCATWDSSLTAGRVFGGGTRLTVL ; D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 GLN n 1 3 LEU n 1 4 VAL n 1 5 GLN n 1 6 SER n 1 7 GLY n 1 8 SER n 1 9 GLU n 1 10 VAL n 1 11 LYS n 1 12 LYS n 1 13 PRO n 1 14 GLY n 1 15 ALA n 1 16 SER n 1 17 VAL n 1 18 LYS n 1 19 VAL n 1 20 SER n 1 21 CYS n 1 22 LYS n 1 23 ALA n 1 24 SER n 1 25 GLY n 1 26 TYR n 1 27 THR n 1 28 PHE n 1 29 THR n 1 30 ASN n 1 31 TYR n 1 32 GLY n 1 33 ILE n 1 34 SER n 1 35 TRP n 1 36 VAL n 1 37 ARG n 1 38 GLN n 1 39 ALA n 1 40 PRO n 1 41 GLY n 1 42 GLN n 1 43 GLY n 1 44 LEU n 1 45 GLU n 1 46 TRP n 1 47 MET n 1 48 GLY n 1 49 TRP n 1 50 ILE n 1 51 SER n 1 52 ALA n 1 53 TYR n 1 54 ASN n 1 55 GLY n 1 56 ASN n 1 57 THR n 1 58 ASN n 1 59 TYR n 1 60 ALA n 1 61 GLN n 1 62 ASN n 1 63 PHE n 1 64 GLN n 1 65 GLY n 1 66 ARG n 1 67 VAL n 1 68 THR n 1 69 MET n 1 70 THR n 1 71 THR n 1 72 ASP n 1 73 THR n 1 74 SER n 1 75 THR n 1 76 LYS n 1 77 THR n 1 78 ALA n 1 79 TYR n 1 80 MET n 1 81 GLU n 1 82 LEU n 1 83 ARG n 1 84 SER n 1 85 LEU n 1 86 ARG n 1 87 SER n 1 88 ASP n 1 89 ASP n 1 90 THR n 1 91 ALA n 1 92 VAL n 1 93 TYR n 1 94 PHE n 1 95 CYS n 1 96 ALA n 1 97 ARG n 1 98 SER n 1 99 GLY n 1 100 TYR n 1 101 SER n 1 102 GLY n 1 103 TYR n 1 104 ASP n 1 105 ASN n 1 106 ASN n 1 107 LEU n 1 108 GLY n 1 109 ALA n 1 110 PHE n 1 111 ASP n 1 112 ILE n 1 113 TRP n 1 114 GLY n 1 115 GLN n 1 116 GLY n 1 117 THR n 1 118 MET n 1 119 VAL n 1 120 THR n 1 121 VAL n 2 1 ASP n 2 2 ILE n 2 3 PRO n 2 4 ASP n 2 5 TYR n 2 6 LEU n 2 7 CYS n 2 8 GLY n 2 9 LYS n 2 10 ILE n 2 11 SER n 2 12 PHE n 2 13 GLU n 2 14 LEU n 2 15 MET n 2 16 ARG n 2 17 GLU n 2 18 PRO n 2 19 CYS n 2 20 ILE n 2 21 THR n 2 22 PRO n 2 23 SER n 2 24 GLY n 2 25 ILE n 2 26 THR n 2 27 TYR n 2 28 ASP n 2 29 ARG n 2 30 LYS n 2 31 ASP n 2 32 ILE n 2 33 GLU n 2 34 GLU n 2 35 HIS n 2 36 LEU n 2 37 GLN n 2 38 ARG n 2 39 VAL n 2 40 GLY n 2 41 HIS n 2 42 PHE n 2 43 ASP n 2 44 PRO n 2 45 VAL n 2 46 THR n 2 47 ARG n 2 48 SER n 2 49 PRO n 2 50 LEU n 2 51 THR n 2 52 GLN n 2 53 GLU n 2 54 GLN n 2 55 LEU n 2 56 ILE n 2 57 PRO n 2 58 ASN n 2 59 LEU n 2 60 ALA n 2 61 MET n 2 62 LYS n 2 63 GLU n 2 64 VAL n 2 65 ILE n 2 66 ASP n 2 67 ALA n 2 68 PHE n 2 69 ILE n 2 70 SER n 2 71 GLU n 2 72 ASN n 2 73 GLY n 2 74 TRP n 2 75 VAL n 2 76 GLU n 2 77 ASP n 3 1 SER n 3 2 VAL n 3 3 VAL n 3 4 THR n 3 5 GLN n 3 6 PRO n 3 7 PRO n 3 8 SER n 3 9 VAL n 3 10 SER n 3 11 ALA n 3 12 ALA n 3 13 PRO n 3 14 GLY n 3 15 GLN n 3 16 LYS n 3 17 VAL n 3 18 THR n 3 19 ILE n 3 20 SER n 3 21 CYS n 3 22 SER n 3 23 GLY n 3 24 THR n 3 25 SER n 3 26 SER n 3 27 ASN n 3 28 ILE n 3 29 GLY n 3 30 ASN n 3 31 SER n 3 32 TYR n 3 33 VAL n 3 34 THR n 3 35 TRP n 3 36 TYR n 3 37 GLN n 3 38 GLN n 3 39 LEU n 3 40 PRO n 3 41 GLY n 3 42 ALA n 3 43 ALA n 3 44 PRO n 3 45 LYS n 3 46 LEU n 3 47 LEU n 3 48 ILE n 3 49 TYR n 3 50 ASP n 3 51 ASN n 3 52 ASN n 3 53 LYS n 3 54 ARG n 3 55 PRO n 3 56 SER n 3 57 GLY n 3 58 ILE n 3 59 PRO n 3 60 ASP n 3 61 ARG n 3 62 PHE n 3 63 SER n 3 64 GLY n 3 65 SER n 3 66 LYS n 3 67 SER n 3 68 GLY n 3 69 THR n 3 70 SER n 3 71 ALA n 3 72 THR n 3 73 LEU n 3 74 GLY n 3 75 ILE n 3 76 THR n 3 77 GLY n 3 78 LEU n 3 79 GLN n 3 80 THR n 3 81 GLY n 3 82 ASP n 3 83 GLU n 3 84 ALA n 3 85 ASP n 3 86 TYR n 3 87 TYR n 3 88 CYS n 3 89 ALA n 3 90 THR n 3 91 TRP n 3 92 ASP n 3 93 SER n 3 94 SER n 3 95 LEU n 3 96 THR n 3 97 ALA n 3 98 GLY n 3 99 ARG n 3 100 VAL n 3 101 PHE n 3 102 GLY n 3 103 GLY n 3 104 GLY n 3 105 THR n 3 106 ARG n 3 107 LEU n 3 108 THR n 3 109 VAL n 3 110 LEU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 121 human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 77 human ? 'STUB1, CHIP, PP1131' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 110 human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 6 6 VAL VAL C . n A 1 2 GLN 2 7 7 GLN GLN C . n A 1 3 LEU 3 8 8 LEU LEU C . n A 1 4 VAL 4 9 9 VAL VAL C . n A 1 5 GLN 5 10 10 GLN GLN C . n A 1 6 SER 6 11 11 SER SER C . n A 1 7 GLY 7 12 12 GLY GLY C . n A 1 8 SER 8 13 13 SER SER C . n A 1 9 GLU 9 14 14 GLU GLU C . n A 1 10 VAL 10 15 15 VAL VAL C . n A 1 11 LYS 11 16 16 LYS LYS C . n A 1 12 LYS 12 17 17 LYS LYS C . n A 1 13 PRO 13 18 18 PRO PRO C . n A 1 14 GLY 14 19 19 GLY GLY C . n A 1 15 ALA 15 20 20 ALA ALA C . n A 1 16 SER 16 21 21 SER SER C . n A 1 17 VAL 17 22 22 VAL VAL C . n A 1 18 LYS 18 23 23 LYS LYS C . n A 1 19 VAL 19 24 24 VAL VAL C . n A 1 20 SER 20 25 25 SER SER C . n A 1 21 CYS 21 26 26 CYS CYS C . n A 1 22 LYS 22 27 27 LYS LYS C . n A 1 23 ALA 23 28 28 ALA ALA C . n A 1 24 SER 24 29 29 SER SER C . n A 1 25 GLY 25 30 30 GLY GLY C . n A 1 26 TYR 26 31 31 TYR TYR C . n A 1 27 THR 27 32 32 THR THR C . n A 1 28 PHE 28 33 33 PHE PHE C . n A 1 29 THR 29 34 34 THR THR C . n A 1 30 ASN 30 35 35 ASN ASN C . n A 1 31 TYR 31 36 36 TYR TYR C . n A 1 32 GLY 32 37 37 GLY GLY C . n A 1 33 ILE 33 38 38 ILE ILE C . n A 1 34 SER 34 39 39 SER SER C . n A 1 35 TRP 35 40 40 TRP TRP C . n A 1 36 VAL 36 41 41 VAL VAL C . n A 1 37 ARG 37 42 42 ARG ARG C . n A 1 38 GLN 38 43 43 GLN GLN C . n A 1 39 ALA 39 44 44 ALA ALA C . n A 1 40 PRO 40 45 45 PRO PRO C . n A 1 41 GLY 41 46 46 GLY GLY C . n A 1 42 GLN 42 47 47 GLN GLN C . n A 1 43 GLY 43 48 48 GLY GLY C . n A 1 44 LEU 44 49 49 LEU LEU C . n A 1 45 GLU 45 50 50 GLU GLU C . n A 1 46 TRP 46 51 51 TRP TRP C . n A 1 47 MET 47 52 52 MET MET C . n A 1 48 GLY 48 53 53 GLY GLY C . n A 1 49 TRP 49 54 54 TRP TRP C . n A 1 50 ILE 50 55 55 ILE ILE C . n A 1 51 SER 51 56 56 SER SER C . n A 1 52 ALA 52 57 57 ALA ALA C . n A 1 53 TYR 53 58 58 TYR TYR C . n A 1 54 ASN 54 59 59 ASN ASN C . n A 1 55 GLY 55 60 60 GLY GLY C . n A 1 56 ASN 56 61 61 ASN ASN C . n A 1 57 THR 57 62 62 THR THR C . n A 1 58 ASN 58 63 63 ASN ASN C . n A 1 59 TYR 59 64 64 TYR TYR C . n A 1 60 ALA 60 65 65 ALA ALA C . n A 1 61 GLN 61 66 66 GLN GLN C . n A 1 62 ASN 62 67 67 ASN ASN C . n A 1 63 PHE 63 68 68 PHE PHE C . n A 1 64 GLN 64 69 69 GLN GLN C . n A 1 65 GLY 65 70 70 GLY GLY C . n A 1 66 ARG 66 71 71 ARG ARG C . n A 1 67 VAL 67 72 72 VAL VAL C . n A 1 68 THR 68 73 73 THR THR C . n A 1 69 MET 69 74 74 MET MET C . n A 1 70 THR 70 75 75 THR THR C . n A 1 71 THR 71 76 76 THR THR C . n A 1 72 ASP 72 77 77 ASP ASP C . n A 1 73 THR 73 78 78 THR THR C . n A 1 74 SER 74 79 79 SER SER C . n A 1 75 THR 75 80 80 THR THR C . n A 1 76 LYS 76 81 81 LYS LYS C . n A 1 77 THR 77 82 82 THR THR C . n A 1 78 ALA 78 83 83 ALA ALA C . n A 1 79 TYR 79 84 84 TYR TYR C . n A 1 80 MET 80 85 85 MET MET C . n A 1 81 GLU 81 86 86 GLU GLU C . n A 1 82 LEU 82 87 87 LEU LEU C . n A 1 83 ARG 83 88 88 ARG ARG C . n A 1 84 SER 84 89 89 SER SER C . n A 1 85 LEU 85 90 90 LEU LEU C . n A 1 86 ARG 86 91 91 ARG ARG C . n A 1 87 SER 87 92 92 SER SER C . n A 1 88 ASP 88 93 93 ASP ASP C . n A 1 89 ASP 89 94 94 ASP ASP C . n A 1 90 THR 90 95 95 THR THR C . n A 1 91 ALA 91 96 96 ALA ALA C . n A 1 92 VAL 92 97 97 VAL VAL C . n A 1 93 TYR 93 98 98 TYR TYR C . n A 1 94 PHE 94 99 99 PHE PHE C . n A 1 95 CYS 95 100 100 CYS CYS C . n A 1 96 ALA 96 101 101 ALA ALA C . n A 1 97 ARG 97 102 102 ARG ARG C . n A 1 98 SER 98 103 103 SER SER C . n A 1 99 GLY 99 104 104 GLY GLY C . n A 1 100 TYR 100 105 105 TYR TYR C . n A 1 101 SER 101 106 106 SER SER C . n A 1 102 GLY 102 107 107 GLY GLY C . n A 1 103 TYR 103 108 108 TYR TYR C . n A 1 104 ASP 104 109 109 ASP ASP C . n A 1 105 ASN 105 110 110 ASN ASN C . n A 1 106 ASN 106 111 111 ASN ASN C . n A 1 107 LEU 107 112 112 LEU LEU C . n A 1 108 GLY 108 113 113 GLY GLY C . n A 1 109 ALA 109 114 114 ALA ALA C . n A 1 110 PHE 110 115 115 PHE PHE C . n A 1 111 ASP 111 116 116 ASP ASP C . n A 1 112 ILE 112 117 117 ILE ILE C . n A 1 113 TRP 113 118 118 TRP TRP C . n A 1 114 GLY 114 119 119 GLY GLY C . n A 1 115 GLN 115 120 120 GLN GLN C . n A 1 116 GLY 116 121 121 GLY GLY C . n A 1 117 THR 117 122 122 THR THR C . n A 1 118 MET 118 123 123 MET MET C . n A 1 119 VAL 119 124 124 VAL VAL C . n A 1 120 THR 120 125 125 THR THR C . n A 1 121 VAL 121 126 126 VAL VAL C . n B 2 1 ASP 1 226 226 ASP ASP B . n B 2 2 ILE 2 227 227 ILE ILE B . n B 2 3 PRO 3 228 228 PRO PRO B . n B 2 4 ASP 4 229 229 ASP ASP B . n B 2 5 TYR 5 230 230 TYR TYR B . n B 2 6 LEU 6 231 231 LEU LEU B . n B 2 7 CYS 7 232 232 CYS CYS B . n B 2 8 GLY 8 233 233 GLY GLY B . n B 2 9 LYS 9 234 234 LYS LYS B . n B 2 10 ILE 10 235 235 ILE ILE B . n B 2 11 SER 11 236 236 SER SER B . n B 2 12 PHE 12 237 237 PHE PHE B . n B 2 13 GLU 13 238 238 GLU GLU B . n B 2 14 LEU 14 239 239 LEU LEU B . n B 2 15 MET 15 240 240 MET MET B . n B 2 16 ARG 16 241 241 ARG ARG B . n B 2 17 GLU 17 242 242 GLU GLU B . n B 2 18 PRO 18 243 243 PRO PRO B . n B 2 19 CYS 19 244 244 CYS CYS B . n B 2 20 ILE 20 245 245 ILE ILE B . n B 2 21 THR 21 246 246 THR THR B . n B 2 22 PRO 22 247 247 PRO PRO B . n B 2 23 SER 23 248 248 SER SER B . n B 2 24 GLY 24 249 249 GLY GLY B . n B 2 25 ILE 25 250 250 ILE ILE B . n B 2 26 THR 26 251 251 THR THR B . n B 2 27 TYR 27 252 252 TYR TYR B . n B 2 28 ASP 28 253 253 ASP ASP B . n B 2 29 ARG 29 254 254 ARG ARG B . n B 2 30 LYS 30 255 255 LYS LYS B . n B 2 31 ASP 31 256 256 ASP ASP B . n B 2 32 ILE 32 257 257 ILE ILE B . n B 2 33 GLU 33 258 258 GLU GLU B . n B 2 34 GLU 34 259 259 GLU GLU B . n B 2 35 HIS 35 260 260 HIS HIS B . n B 2 36 LEU 36 261 261 LEU LEU B . n B 2 37 GLN 37 262 262 GLN GLN B . n B 2 38 ARG 38 263 263 ARG ARG B . n B 2 39 VAL 39 264 264 VAL VAL B . n B 2 40 GLY 40 265 265 GLY GLY B . n B 2 41 HIS 41 266 266 HIS HIS B . n B 2 42 PHE 42 267 267 PHE PHE B . n B 2 43 ASP 43 268 268 ASP ASP B . n B 2 44 PRO 44 269 269 PRO PRO B . n B 2 45 VAL 45 270 270 VAL VAL B . n B 2 46 THR 46 271 271 THR THR B . n B 2 47 ARG 47 272 272 ARG ARG B . n B 2 48 SER 48 273 273 SER SER B . n B 2 49 PRO 49 274 274 PRO PRO B . n B 2 50 LEU 50 275 275 LEU LEU B . n B 2 51 THR 51 276 276 THR THR B . n B 2 52 GLN 52 277 277 GLN GLN B . n B 2 53 GLU 53 278 278 GLU GLU B . n B 2 54 GLN 54 279 279 GLN GLN B . n B 2 55 LEU 55 280 280 LEU LEU B . n B 2 56 ILE 56 281 281 ILE ILE B . n B 2 57 PRO 57 282 282 PRO PRO B . n B 2 58 ASN 58 283 283 ASN ASN B . n B 2 59 LEU 59 284 284 LEU LEU B . n B 2 60 ALA 60 285 285 ALA ALA B . n B 2 61 MET 61 286 286 MET MET B . n B 2 62 LYS 62 287 287 LYS LYS B . n B 2 63 GLU 63 288 288 GLU GLU B . n B 2 64 VAL 64 289 289 VAL VAL B . n B 2 65 ILE 65 290 290 ILE ILE B . n B 2 66 ASP 66 291 291 ASP ASP B . n B 2 67 ALA 67 292 292 ALA ALA B . n B 2 68 PHE 68 293 293 PHE PHE B . n B 2 69 ILE 69 294 294 ILE ILE B . n B 2 70 SER 70 295 295 SER SER B . n B 2 71 GLU 71 296 296 GLU GLU B . n B 2 72 ASN 72 297 297 ASN ASN B . n B 2 73 GLY 73 298 ? ? ? B . n B 2 74 TRP 74 299 ? ? ? B . n B 2 75 VAL 75 300 ? ? ? B . n B 2 76 GLU 76 301 ? ? ? B . n B 2 77 ASP 77 302 ? ? ? B . n C 3 1 SER 1 17 17 SER SER D . n C 3 2 VAL 2 18 18 VAL VAL D . n C 3 3 VAL 3 19 19 VAL VAL D . n C 3 4 THR 4 20 20 THR THR D . n C 3 5 GLN 5 21 21 GLN GLN D . n C 3 6 PRO 6 22 22 PRO PRO D . n C 3 7 PRO 7 23 23 PRO PRO D . n C 3 8 SER 8 24 24 SER SER D . n C 3 9 VAL 9 25 25 VAL VAL D . n C 3 10 SER 10 26 26 SER SER D . n C 3 11 ALA 11 27 27 ALA ALA D . n C 3 12 ALA 12 28 28 ALA ALA D . n C 3 13 PRO 13 29 29 PRO PRO D . n C 3 14 GLY 14 30 30 GLY GLY D . n C 3 15 GLN 15 31 31 GLN GLN D . n C 3 16 LYS 16 32 32 LYS LYS D . n C 3 17 VAL 17 33 33 VAL VAL D . n C 3 18 THR 18 34 34 THR THR D . n C 3 19 ILE 19 35 35 ILE ILE D . n C 3 20 SER 20 36 36 SER SER D . n C 3 21 CYS 21 37 37 CYS CYS D . n C 3 22 SER 22 38 38 SER SER D . n C 3 23 GLY 23 39 39 GLY GLY D . n C 3 24 THR 24 40 40 THR THR D . n C 3 25 SER 25 41 41 SER SER D . n C 3 26 SER 26 42 42 SER SER D . n C 3 27 ASN 27 43 43 ASN ASN D . n C 3 28 ILE 28 44 44 ILE ILE D . n C 3 29 GLY 29 45 45 GLY GLY D . n C 3 30 ASN 30 46 46 ASN ASN D . n C 3 31 SER 31 47 47 SER SER D . n C 3 32 TYR 32 48 48 TYR TYR D . n C 3 33 VAL 33 49 49 VAL VAL D . n C 3 34 THR 34 50 50 THR THR D . n C 3 35 TRP 35 51 51 TRP TRP D . n C 3 36 TYR 36 52 52 TYR TYR D . n C 3 37 GLN 37 53 53 GLN GLN D . n C 3 38 GLN 38 54 54 GLN GLN D . n C 3 39 LEU 39 55 55 LEU LEU D . n C 3 40 PRO 40 56 56 PRO PRO D . n C 3 41 GLY 41 57 57 GLY GLY D . n C 3 42 ALA 42 58 58 ALA ALA D . n C 3 43 ALA 43 59 59 ALA ALA D . n C 3 44 PRO 44 60 60 PRO PRO D . n C 3 45 LYS 45 61 61 LYS LYS D . n C 3 46 LEU 46 62 62 LEU LEU D . n C 3 47 LEU 47 63 63 LEU LEU D . n C 3 48 ILE 48 64 64 ILE ILE D . n C 3 49 TYR 49 65 65 TYR TYR D . n C 3 50 ASP 50 66 66 ASP ASP D . n C 3 51 ASN 51 67 67 ASN ASN D . n C 3 52 ASN 52 68 68 ASN ASN D . n C 3 53 LYS 53 69 69 LYS LYS D . n C 3 54 ARG 54 70 70 ARG ARG D . n C 3 55 PRO 55 71 71 PRO PRO D . n C 3 56 SER 56 72 72 SER SER D . n C 3 57 GLY 57 73 73 GLY GLY D . n C 3 58 ILE 58 74 74 ILE ILE D . n C 3 59 PRO 59 75 75 PRO PRO D . n C 3 60 ASP 60 76 76 ASP ASP D . n C 3 61 ARG 61 77 77 ARG ARG D . n C 3 62 PHE 62 78 78 PHE PHE D . n C 3 63 SER 63 79 79 SER SER D . n C 3 64 GLY 64 80 80 GLY GLY D . n C 3 65 SER 65 81 81 SER SER D . n C 3 66 LYS 66 82 82 LYS LYS D . n C 3 67 SER 67 83 83 SER SER D . n C 3 68 GLY 68 84 84 GLY GLY D . n C 3 69 THR 69 85 85 THR THR D . n C 3 70 SER 70 86 86 SER SER D . n C 3 71 ALA 71 87 87 ALA ALA D . n C 3 72 THR 72 88 88 THR THR D . n C 3 73 LEU 73 89 89 LEU LEU D . n C 3 74 GLY 74 90 90 GLY GLY D . n C 3 75 ILE 75 91 91 ILE ILE D . n C 3 76 THR 76 92 92 THR THR D . n C 3 77 GLY 77 93 93 GLY GLY D . n C 3 78 LEU 78 94 94 LEU LEU D . n C 3 79 GLN 79 95 95 GLN GLN D . n C 3 80 THR 80 96 96 THR THR D . n C 3 81 GLY 81 97 97 GLY GLY D . n C 3 82 ASP 82 98 98 ASP ASP D . n C 3 83 GLU 83 99 99 GLU GLU D . n C 3 84 ALA 84 100 100 ALA ALA D . n C 3 85 ASP 85 101 101 ASP ASP D . n C 3 86 TYR 86 102 102 TYR TYR D . n C 3 87 TYR 87 103 103 TYR TYR D . n C 3 88 CYS 88 104 104 CYS CYS D . n C 3 89 ALA 89 105 105 ALA ALA D . n C 3 90 THR 90 106 106 THR THR D . n C 3 91 TRP 91 107 107 TRP TRP D . n C 3 92 ASP 92 108 108 ASP ASP D . n C 3 93 SER 93 109 109 SER SER D . n C 3 94 SER 94 110 110 SER SER D . n C 3 95 LEU 95 111 111 LEU LEU D . n C 3 96 THR 96 112 112 THR THR D . n C 3 97 ALA 97 113 113 ALA ALA D . n C 3 98 GLY 98 114 114 GLY GLY D . n C 3 99 ARG 99 115 115 ARG ARG D . n C 3 100 VAL 100 116 116 VAL VAL D . n C 3 101 PHE 101 117 117 PHE PHE D . n C 3 102 GLY 102 118 118 GLY GLY D . n C 3 103 GLY 103 119 119 GLY GLY D . n C 3 104 GLY 104 120 120 GLY GLY D . n C 3 105 THR 105 121 121 THR THR D . n C 3 106 ARG 106 122 122 ARG ARG D . n C 3 107 LEU 107 123 123 LEU LEU D . n C 3 108 THR 108 124 124 THR THR D . n C 3 109 VAL 109 125 125 VAL VAL D . n C 3 110 LEU 110 126 126 LEU LEU D . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9O7G _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9O7G _struct.title 'CHIP E3 ligase U-box-Fab H1 epitope focused refinement' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9O7G _struct_keywords.text 'U-box E3 ligase, Fab, Cryo-EM, Protein degradation, LIGASE-IMMUNE SYSTEM complex' _struct_keywords.pdbx_keywords 'LIGASE/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9O7G 9O7G ? 1 ? 1 2 UNP CHIP_HUMAN Q9UNE7 ? 2 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVED 226 3 PDB 9O7G 9O7G ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9O7G C 1 ? 121 ? 9O7G 6 ? 126 ? 6 126 2 2 9O7G B 1 ? 77 ? Q9UNE7 226 ? 302 ? 226 302 3 3 9O7G D 1 ? 110 ? 9O7G 17 ? 126 ? 17 126 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 27 ? THR A 29 ? THR C 32 THR C 34 5 ? 3 HELX_P HELX_P2 AA2 ARG A 86 ? THR A 90 ? ARG C 91 THR C 95 5 ? 5 HELX_P HELX_P3 AA3 PRO B 3 ? CYS B 7 ? PRO B 228 CYS B 232 5 ? 5 HELX_P HELX_P4 AA4 ARG B 29 ? VAL B 39 ? ARG B 254 VAL B 264 1 ? 11 HELX_P HELX_P5 AA5 ASN B 58 ? SER B 70 ? ASN B 283 SER B 295 1 ? 13 HELX_P HELX_P6 AA6 GLN C 79 ? GLU C 83 ? GLN D 95 GLU D 99 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 95 SG ? ? C CYS 26 C CYS 100 1_555 ? ? ? ? ? ? ? 2.016 ? ? disulf2 disulf ? ? C CYS 21 SG ? ? ? 1_555 C CYS 88 SG ? ? D CYS 37 D CYS 104 1_555 ? ? ? ? ? ? ? 2.040 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 21 ? CYS A 95 ? CYS C 26 ? 1_555 CYS C 100 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS C 21 ? CYS C 88 ? CYS D 37 ? 1_555 CYS D 104 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 5 ? AA5 ? 4 ? AA6 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 9 ? VAL A 10 ? GLU C 14 VAL C 15 AA1 2 THR A 117 ? THR A 120 ? THR C 122 THR C 125 AA1 3 ALA A 91 ? TYR A 100 ? ALA C 96 TYR C 105 AA1 4 TYR A 31 ? GLN A 38 ? TYR C 36 GLN C 43 AA1 5 LEU A 44 ? ILE A 50 ? LEU C 49 ILE C 55 AA1 6 THR A 57 ? TYR A 59 ? THR C 62 TYR C 64 AA2 1 VAL A 17 ? LYS A 22 ? VAL C 22 LYS C 27 AA2 2 THR A 77 ? LEU A 82 ? THR C 82 LEU C 87 AA2 3 VAL A 67 ? ASP A 72 ? VAL C 72 ASP C 77 AA3 1 THR B 26 ? ASP B 28 ? THR B 251 ASP B 253 AA3 2 PRO B 18 ? ILE B 20 ? PRO B 243 ILE B 245 AA3 3 ILE B 56 ? PRO B 57 ? ILE B 281 PRO B 282 AA4 1 SER C 8 ? ALA C 11 ? SER D 24 ALA D 27 AA4 2 THR C 105 ? VAL C 109 ? THR D 121 VAL D 125 AA4 3 ALA C 84 ? TRP C 91 ? ALA D 100 TRP D 107 AA4 4 THR C 34 ? GLN C 38 ? THR D 50 GLN D 54 AA4 5 LYS C 45 ? ILE C 48 ? LYS D 61 ILE D 64 AA5 1 SER C 8 ? ALA C 11 ? SER D 24 ALA D 27 AA5 2 THR C 105 ? VAL C 109 ? THR D 121 VAL D 125 AA5 3 ALA C 84 ? TRP C 91 ? ALA D 100 TRP D 107 AA5 4 ARG C 99 ? PHE C 101 ? ARG D 115 PHE D 117 AA6 1 VAL C 17 ? SER C 22 ? VAL D 33 SER D 38 AA6 2 SER C 70 ? ILE C 75 ? SER D 86 ILE D 91 AA6 3 PHE C 62 ? SER C 63 ? PHE D 78 SER D 79 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 9 ? N GLU C 14 O MET A 118 ? O MET C 123 AA1 2 3 O VAL A 119 ? O VAL C 124 N ALA A 91 ? N ALA C 96 AA1 3 4 O PHE A 94 ? O PHE C 99 N VAL A 36 ? N VAL C 41 AA1 4 5 N ARG A 37 ? N ARG C 42 O GLU A 45 ? O GLU C 50 AA1 5 6 N TRP A 49 ? N TRP C 54 O ASN A 58 ? O ASN C 63 AA2 1 2 N CYS A 21 ? N CYS C 26 O ALA A 78 ? O ALA C 83 AA2 2 3 O GLU A 81 ? O GLU C 86 N THR A 68 ? N THR C 73 AA3 1 2 O TYR B 27 ? O TYR B 252 N CYS B 19 ? N CYS B 244 AA3 2 3 N ILE B 20 ? N ILE B 245 O ILE B 56 ? O ILE B 281 AA4 1 2 N VAL C 9 ? N VAL D 25 O ARG C 106 ? O ARG D 122 AA4 2 3 O LEU C 107 ? O LEU D 123 N ALA C 84 ? N ALA D 100 AA4 3 4 O TYR C 87 ? O TYR D 103 N TYR C 36 ? N TYR D 52 AA4 4 5 N TRP C 35 ? N TRP D 51 O ILE C 48 ? O ILE D 64 AA5 1 2 N VAL C 9 ? N VAL D 25 O ARG C 106 ? O ARG D 122 AA5 2 3 O LEU C 107 ? O LEU D 123 N ALA C 84 ? N ALA D 100 AA5 3 4 N THR C 90 ? N THR D 106 O VAL C 100 ? O VAL D 116 AA6 1 2 N ILE C 19 ? N ILE D 35 O LEU C 73 ? O LEU D 89 AA6 2 3 O GLY C 74 ? O GLY D 90 N SER C 63 ? N SER D 79 # _pdbx_entry_details.entry_id 9O7G _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE B ARG 263 ? ? CZ B ARG 263 ? ? NH2 B ARG 263 ? ? 123.31 120.30 3.01 0.50 N 2 1 NE D ARG 70 ? ? CZ D ARG 70 ? ? NH2 D ARG 70 ? ? 123.55 120.30 3.25 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN C 10 ? ? 57.83 147.97 2 1 THR C 32 ? ? -67.43 78.42 3 1 ASN C 110 ? ? 64.17 96.83 4 1 LEU B 239 ? ? 57.43 118.39 5 1 ALA B 292 ? ? -77.71 24.73 6 1 ASN D 43 ? ? 61.31 -38.46 7 1 ASN D 67 ? ? 64.30 -37.41 8 1 ASN D 68 ? ? -148.01 -4.99 9 1 SER D 109 ? ? -84.03 -101.32 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9O7G _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9O7G _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.1 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 482143 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Fab H1-CHIP E3 ligase U-box epitope' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2, 3' # _em_imaging.entry_id 9O7G _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9O7G _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9O7G _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B GLY 298 ? B GLY 73 2 1 Y 1 B TRP 299 ? B TRP 74 3 1 Y 1 B VAL 300 ? B VAL 75 4 1 Y 1 B GLU 301 ? B GLU 76 5 1 Y 1 B ASP 302 ? B ASP 77 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_admin.current_status REL _em_admin.deposition_date 2025-04-15 _em_admin.deposition_site RCSB _em_admin.entry_id 9O7G _em_admin.last_update 2026-05-13 _em_admin.map_release_date 2026-05-13 _em_admin.title 'CHIP E3 ligase U-box-Fab H1 epitope focused refinement' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 66 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4.7 ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC 4.7 ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute on Aging (NIH/NIA)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'R01 AG068125' _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9O7G _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ #