data_9O7J # _entry.id 9O7J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9O7J pdb_00009o7j 10.2210/pdb9o7j/pdb WWPDB D_1000294851 ? ? EMDB EMD-70201 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-07-30 ? 2 'Structure model' 1 1 2025-09-03 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation_author.identifier_ORCID' 3 2 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9O7J _pdbx_database_status.recvd_initial_deposition_date 2025-04-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-Em of VEVAG Peptide 1' _pdbx_database_related.db_id EMD-70201 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email fw2@uab.edu _pdbx_contact_author.name_first Fengbin _pdbx_contact_author.name_last Wang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1008-663X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Rich-New, S.T.' 1 ? 'Wang, R.' 2 ? 'Zia, A.' 3 ? 'Tovar, J.D.' 4 ? 'Wang, F.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'ACS Macro Lett' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2161-1653 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 1100 _citation.page_last 1106 _citation.title 'Cryo-EM Visualization of Intermolecular pi-Electron Interactions within pi-Conjugated Peptidic Supramolecular Polymers.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acsmacrolett.5c00360 _citation.pdbx_database_id_PubMed 40686463 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rich-New, S.T.' 1 ? primary 'Wang, R.' 2 ? primary 'Zia, A.' 3 ? primary 'Wang, F.' 4 ? primary 'Tovar, J.D.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'pi-conjugated peptide' 473.520 6 ? ? ? ? 2 non-polymer syn ;4,4'-(thiophene-2,5-diyl)dibenzoic acid ; 324.350 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GAVEV _entity_poly.pdbx_seq_one_letter_code_can GAVEV _entity_poly.pdbx_strand_id C,D,B,F,A,H _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ;4,4'-(thiophene-2,5-diyl)dibenzoic acid ; _pdbx_entity_nonpoly.comp_id A1B9Y # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 VAL n 1 4 GLU n 1 5 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 5 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1B9Y non-polymer . ;4,4'-(thiophene-2,5-diyl)dibenzoic acid ; ? 'C18 H12 O4 S' 324.350 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY C . n A 1 2 ALA 2 2 2 ALA ALA C . n A 1 3 VAL 3 3 3 VAL VAL C . n A 1 4 GLU 4 4 4 GLU GLU C . n A 1 5 VAL 5 5 5 VAL VAL C . n B 1 1 GLY 1 101 101 GLY GLY D . n B 1 2 ALA 2 102 ? ? ? D . n B 1 3 VAL 3 103 ? ? ? D . n B 1 4 GLU 4 104 ? ? ? D . n B 1 5 VAL 5 105 ? ? ? D . n C 1 1 GLY 1 1 1 GLY GLY B . n C 1 2 ALA 2 2 2 ALA ALA B . n C 1 3 VAL 3 3 3 VAL VAL B . n C 1 4 GLU 4 4 4 GLU GLU B . n C 1 5 VAL 5 5 5 VAL VAL B . n D 1 1 GLY 1 101 101 GLY GLY F . n D 1 2 ALA 2 102 102 ALA ALA F . n D 1 3 VAL 3 103 103 VAL VAL F . n D 1 4 GLU 4 104 104 GLU GLU F . n D 1 5 VAL 5 105 105 VAL VAL F . n E 1 1 GLY 1 1 1 GLY GLY A . n E 1 2 ALA 2 2 2 ALA ALA A . n E 1 3 VAL 3 3 3 VAL VAL A . n E 1 4 GLU 4 4 4 GLU GLU A . n E 1 5 VAL 5 5 5 VAL VAL A . n F 1 1 GLY 1 101 101 GLY GLY H . n F 1 2 ALA 2 102 102 ALA ALA H . n F 1 3 VAL 3 103 103 VAL VAL H . n F 1 4 GLU 4 104 104 GLU GLU H . n F 1 5 VAL 5 105 105 VAL VAL H . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1B9Y _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1B9Y _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 A1B9Y 1 201 201 A1B9Y SM0 C . H 2 A1B9Y 1 201 201 A1B9Y SM0 B . I 2 A1B9Y 1 201 201 A1B9Y SM0 A . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9O7J _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9O7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9O7J _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9O7J _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.006 ? 4176 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 2.395 ? 5580 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 28.718 ? 666 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.046 ? 540 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 702 ? f_plane_restr ? ? ? # _struct.entry_id 9O7J _struct.title 'Cryo-EM of VEVAG Peptide 1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9O7J _struct_keywords.text 'peptide fiber, helical polymer, protein fibril' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9O7J _struct_ref.pdbx_db_accession 9O7J _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9O7J C 1 ? 5 ? 9O7J 1 ? 5 ? 1 5 2 1 9O7J D 1 ? 5 ? 9O7J 101 ? 105 ? 101 105 3 1 9O7J B 1 ? 5 ? 9O7J 1 ? 5 ? 1 5 4 1 9O7J F 1 ? 5 ? 9O7J 101 ? 105 ? 101 105 5 1 9O7J A 1 ? 5 ? 9O7J 1 ? 5 ? 1 5 6 1 9O7J H 1 ? 5 ? 9O7J 101 ? 105 ? 101 105 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? 108-meric 108 2 'helical asymmetric unit' ? hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-18)' A,B,C,D,E,F,G,H,I 2 1 A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'helical symmetry operation' ? ? 0.95548500 -0.29504100 0.00000000 0.00000 0.29504100 0.95548500 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 -19.00000 3 'helical symmetry operation' ? ? 0.97487800 -0.22274000 0.00000000 0.00000 0.22274000 0.97487800 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 -14.25000 4 'helical symmetry operation' ? ? 0.98880900 -0.14919000 0.00000000 0.00000 0.14919000 0.98880900 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 -9.50000 5 'helical symmetry operation' ? ? 0.99719800 -0.07480500 0.00000000 0.00000 0.07480500 0.99719800 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 -4.75000 6 'helical symmetry operation' ? ? 0.99719800 0.07480500 0.00000000 0.00000 -0.07480500 0.99719800 0.00000000 0.00000 0.00000000 -0.00000000 1.00000000 4.75000 7 'helical symmetry operation' ? ? 0.98880900 0.14919000 0.00000000 0.00000 -0.14919000 0.98880900 0.00000000 0.00000 0.00000000 -0.00000000 1.00000000 9.50000 8 'helical symmetry operation' ? ? 0.97487800 0.22274000 0.00000000 0.00000 -0.22274000 0.97487800 0.00000000 0.00000 0.00000000 -0.00000000 1.00000000 14.25000 9 'helical symmetry operation' ? ? 0.95548500 0.29504100 0.00000000 0.00000 -0.29504100 0.95548500 0.00000000 0.00000 0.00000000 -0.00000000 1.00000000 19.00000 10 'helical symmetry operation' ? ? -0.95548500 0.29504100 0.00000000 0.00000 -0.29504100 -0.95548500 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -19.00000 11 'helical symmetry operation' ? ? -0.97487800 0.22274000 0.00000000 0.00000 -0.22274000 -0.97487800 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -14.25000 12 'helical symmetry operation' ? ? -0.98880900 0.14919000 0.00000000 0.00000 -0.14919000 -0.98880900 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -9.50000 13 'helical symmetry operation' ? ? -0.99719800 0.07480500 0.00000000 0.00000 -0.07480500 -0.99719800 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -4.75000 14 'helical symmetry operation' ? ? -1.00000000 -0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 15 'helical symmetry operation' ? ? -0.99719800 -0.07480500 0.00000000 0.00000 0.07480500 -0.99719800 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 4.75000 16 'helical symmetry operation' ? ? -0.98880900 -0.14919000 0.00000000 0.00000 0.14919000 -0.98880900 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 9.50000 17 'helical symmetry operation' ? ? -0.97487800 -0.22274000 0.00000000 0.00000 0.22274000 -0.97487800 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 14.25000 18 'helical symmetry operation' ? ? -0.95548500 -0.29504100 0.00000000 0.00000 0.29504100 -0.95548500 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 19.00000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 N ? ? ? 1_555 G A1B9Y . C02 ? ? C GLY 1 C A1B9Y 201 1_555 ? ? ? ? ? ? ? 1.463 ? ? covale2 covale both ? G A1B9Y . C15 ? ? ? 1_555 B GLY 1 N ? ? C A1B9Y 201 D GLY 101 1_555 ? ? ? ? ? ? ? 1.465 ? ? covale3 covale both ? C GLY 1 N ? ? ? 1_555 H A1B9Y . C02 ? ? B GLY 1 B A1B9Y 201 1_555 ? ? ? ? ? ? ? 1.468 ? ? covale4 covale both ? H A1B9Y . C15 ? ? ? 1_555 D GLY 1 N ? ? B A1B9Y 201 F GLY 101 1_555 ? ? ? ? ? ? ? 1.513 ? ? covale5 covale both ? E GLY 1 N ? ? ? 1_555 I A1B9Y . C02 ? ? A GLY 1 A A1B9Y 201 1_555 ? ? ? ? ? ? ? 1.461 ? ? covale6 covale both ? I A1B9Y . C15 ? ? ? 1_555 F GLY 1 N ? ? A A1B9Y 201 H GLY 101 1_555 ? ? ? ? ? ? ? 1.464 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 A1B9Y G . ? GLY A 1 ? A1B9Y C 201 ? 1_555 GLY C 1 ? 1_555 C02 N GLY 1 A1B9Y None Crosslinker 2 A1B9Y G . ? GLY B 1 ? A1B9Y C 201 ? 1_555 GLY D 101 ? 1_555 C15 N GLY 2 A1B9Y None Crosslinker 3 A1B9Y H . ? GLY C 1 ? A1B9Y B 201 ? 1_555 GLY B 1 ? 1_555 C02 N GLY 1 A1B9Y None Crosslinker 4 A1B9Y H . ? GLY D 1 ? A1B9Y B 201 ? 1_555 GLY F 101 ? 1_555 C15 N GLY 2 A1B9Y None Crosslinker 5 A1B9Y I . ? GLY E 1 ? A1B9Y A 201 ? 1_555 GLY A 1 ? 1_555 C02 N GLY 1 A1B9Y None Crosslinker 6 A1B9Y I . ? GLY F 1 ? A1B9Y A 201 ? 1_555 GLY H 101 ? 1_555 C15 N GLY 2 A1B9Y None Crosslinker # _pdbx_entry_details.entry_id 9O7J _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLY _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O01 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 A1B9Y _pdbx_validate_close_contact.auth_seq_id_2 201 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.69 # _pdbx_helical_symmetry.entry_id 9O7J _pdbx_helical_symmetry.number_of_operations 18 _pdbx_helical_symmetry.rotation_per_n_subunits -4.29 _pdbx_helical_symmetry.rise_per_n_subunits 4.75 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 2 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9O7J _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9O7J _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 304634 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'VEVAG peptide fibril' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 9O7J _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9O7J _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9O7J _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 D ALA 102 ? B ALA 2 2 1 Y 1 D VAL 103 ? B VAL 3 3 1 Y 1 D GLU 104 ? B GLU 4 4 1 Y 1 D VAL 105 ? B VAL 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1B9Y C02 C N N 1 A1B9Y C03 C Y N 2 A1B9Y C04 C Y N 3 A1B9Y C05 C Y N 4 A1B9Y C06 C Y N 5 A1B9Y C07 C Y N 6 A1B9Y C08 C Y N 7 A1B9Y C09 C Y N 8 A1B9Y C10 C Y N 9 A1B9Y C11 C Y N 10 A1B9Y C12 C Y N 11 A1B9Y C13 C Y N 12 A1B9Y C14 C Y N 13 A1B9Y C15 C N N 14 A1B9Y C17 C Y N 15 A1B9Y C18 C Y N 16 A1B9Y C20 C Y N 17 A1B9Y C21 C Y N 18 A1B9Y O01 O N N 19 A1B9Y O16 O N N 20 A1B9Y S19 S Y N 21 A1B9Y H2 H N N 22 A1B9Y H3 H N N 23 A1B9Y H4 H N N 24 A1B9Y H5 H N N 25 A1B9Y H6 H N N 26 A1B9Y H7 H N N 27 A1B9Y H9 H N N 28 A1B9Y H10 H N N 29 A1B9Y H11 H N N 30 A1B9Y H12 H N N 31 A1B9Y O1 O N N 32 A1B9Y O2 O N N 33 A1B9Y H1 H N N 34 A1B9Y H8 H N N 35 ALA N N N N 36 ALA CA C N S 37 ALA C C N N 38 ALA O O N N 39 ALA CB C N N 40 ALA OXT O N N 41 ALA H H N N 42 ALA H2 H N N 43 ALA HA H N N 44 ALA HB1 H N N 45 ALA HB2 H N N 46 ALA HB3 H N N 47 ALA HXT H N N 48 GLU N N N N 49 GLU CA C N S 50 GLU C C N N 51 GLU O O N N 52 GLU CB C N N 53 GLU CG C N N 54 GLU CD C N N 55 GLU OE1 O N N 56 GLU OE2 O N N 57 GLU OXT O N N 58 GLU H H N N 59 GLU H2 H N N 60 GLU HA H N N 61 GLU HB2 H N N 62 GLU HB3 H N N 63 GLU HG2 H N N 64 GLU HG3 H N N 65 GLU HE2 H N N 66 GLU HXT H N N 67 GLY N N N N 68 GLY CA C N N 69 GLY C C N N 70 GLY O O N N 71 GLY OXT O N N 72 GLY H H N N 73 GLY H2 H N N 74 GLY HA2 H N N 75 GLY HA3 H N N 76 GLY HXT H N N 77 VAL N N N N 78 VAL CA C N S 79 VAL C C N N 80 VAL O O N N 81 VAL CB C N N 82 VAL CG1 C N N 83 VAL CG2 C N N 84 VAL OXT O N N 85 VAL H H N N 86 VAL H2 H N N 87 VAL HA H N N 88 VAL HB H N N 89 VAL HG11 H N N 90 VAL HG12 H N N 91 VAL HG13 H N N 92 VAL HG21 H N N 93 VAL HG22 H N N 94 VAL HG23 H N N 95 VAL HXT H N N 96 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B9Y C17 C18 doub Y N 1 A1B9Y C17 C14 sing Y N 2 A1B9Y C18 C11 sing Y N 3 A1B9Y C15 C14 sing N N 4 A1B9Y C15 O16 doub N N 5 A1B9Y C14 C13 doub Y N 6 A1B9Y C09 C08 sing Y N 7 A1B9Y C09 C10 doub Y N 8 A1B9Y C11 C10 sing N N 9 A1B9Y C11 C12 doub Y N 10 A1B9Y C08 C07 doub Y N 11 A1B9Y C10 S19 sing Y N 12 A1B9Y C13 C12 sing Y N 13 A1B9Y C07 S19 sing Y N 14 A1B9Y C07 C06 sing N N 15 A1B9Y C20 C06 doub Y N 16 A1B9Y C20 C21 sing Y N 17 A1B9Y C06 C05 sing Y N 18 A1B9Y C21 C03 doub Y N 19 A1B9Y C05 C04 doub Y N 20 A1B9Y C03 C04 sing Y N 21 A1B9Y C03 C02 sing N N 22 A1B9Y C02 O01 doub N N 23 A1B9Y C04 H2 sing N N 24 A1B9Y C05 H3 sing N N 25 A1B9Y C08 H4 sing N N 26 A1B9Y C09 H5 sing N N 27 A1B9Y C12 H6 sing N N 28 A1B9Y C13 H7 sing N N 29 A1B9Y C17 H9 sing N N 30 A1B9Y C18 H10 sing N N 31 A1B9Y C20 H11 sing N N 32 A1B9Y C21 H12 sing N N 33 A1B9Y C02 O1 sing N N 34 A1B9Y C15 O2 sing N N 35 A1B9Y O1 H1 sing N N 36 A1B9Y O2 H8 sing N N 37 ALA N CA sing N N 38 ALA N H sing N N 39 ALA N H2 sing N N 40 ALA CA C sing N N 41 ALA CA CB sing N N 42 ALA CA HA sing N N 43 ALA C O doub N N 44 ALA C OXT sing N N 45 ALA CB HB1 sing N N 46 ALA CB HB2 sing N N 47 ALA CB HB3 sing N N 48 ALA OXT HXT sing N N 49 GLU N CA sing N N 50 GLU N H sing N N 51 GLU N H2 sing N N 52 GLU CA C sing N N 53 GLU CA CB sing N N 54 GLU CA HA sing N N 55 GLU C O doub N N 56 GLU C OXT sing N N 57 GLU CB CG sing N N 58 GLU CB HB2 sing N N 59 GLU CB HB3 sing N N 60 GLU CG CD sing N N 61 GLU CG HG2 sing N N 62 GLU CG HG3 sing N N 63 GLU CD OE1 doub N N 64 GLU CD OE2 sing N N 65 GLU OE2 HE2 sing N N 66 GLU OXT HXT sing N N 67 GLY N CA sing N N 68 GLY N H sing N N 69 GLY N H2 sing N N 70 GLY CA C sing N N 71 GLY CA HA2 sing N N 72 GLY CA HA3 sing N N 73 GLY C O doub N N 74 GLY C OXT sing N N 75 GLY OXT HXT sing N N 76 VAL N CA sing N N 77 VAL N H sing N N 78 VAL N H2 sing N N 79 VAL CA C sing N N 80 VAL CA CB sing N N 81 VAL CA HA sing N N 82 VAL C O doub N N 83 VAL C OXT sing N N 84 VAL CB CG1 sing N N 85 VAL CB CG2 sing N N 86 VAL CB HB sing N N 87 VAL CG1 HG11 sing N N 88 VAL CG1 HG12 sing N N 89 VAL CG1 HG13 sing N N 90 VAL CG2 HG21 sing N N 91 VAL CG2 HG22 sing N N 92 VAL CG2 HG23 sing N N 93 VAL OXT HXT sing N N 94 # _em_admin.current_status REL _em_admin.deposition_date 2025-04-15 _em_admin.deposition_site RCSB _em_admin.entry_id 9O7J _em_admin.last_update 2025-09-03 _em_admin.map_release_date 2025-07-30 _em_admin.title 'Cryo-EM of VEVAG Peptide 1' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C2 _em_helical_entity.angular_rotation_per_subunit -4.29 _em_helical_entity.axial_rise_per_subunit 4.75 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? ? ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.18.2_3874 ? 'IMAGE ACQUISITION' ? 3 ? ? 1 ? ? ? MASKING ? 4 ? ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? ? 'MODEL FITTING' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM138756 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9O7J _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #