HEADER TRANSFERASE 19-APR-25 9OA6 TITLE CRYO-EM STRUCTURE OF THE ZDHHC5-GOLGA7 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GOLGIN SUBFAMILY A MEMBER 7; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: GOLGI COMPLEX-ASSOCIATED PROTEIN OF 16 KDA; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FULL-LENGTH HUMAN GOLGA7 WITH N-TERMINAL FLAG TAG AND COMPND 7 FLEXIBLE LINKER; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PALMITOYLTRANSFERASE ZDHHC5; COMPND 10 CHAIN: A; COMPND 11 SYNONYM: ZINC FINGER DHHC DOMAIN-CONTAINING PROTEIN 5,DHHC-5; COMPND 12 EC: 2.3.1.225; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: N-TERMINAL 3XFLAG-SFGFP FUSION TO FULL LENGTH MOUSE COMPND 15 ZDHHC5 SEPARATED BY A TEV PROTEASE CLEAVAGE SITE AND FLEXIBLE LINKER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GOLGA7, GCP16, HDCKB03P, HSPC041; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293S GNTI-; SOURCE 9 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-3022; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: ZDHHC5, KIAA1748; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: HEK293S GNTI-; SOURCE 18 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-3022 KEYWDS PALMITOYLTRANSFERASE MEMBRANE PROTEIN COMPLEX PROTEIN S-ACYLATION KEYWDS 2 ACCESSORY PROTEIN, TRANSFERASE EXPDTA ELECTRON MICROSCOPY AUTHOR M.A.KAHLSON,S.J.DIXON,J.A.BUTTERWICK,H.WANG REVDAT 1 22-OCT-25 9OA6 0 JRNL AUTH M.A.KAHLSON,J.RITHO,J.V.GOMES,H.WANG,J.A.BUTTERWICK, JRNL AUTH 2 S.J.DIXON JRNL TITL FUNCTIONAL DISSECTION OF THE ZDHHC PALMITOYLTRANSFERASE JRNL TITL 2 5-GOLGIN A7 PALMITOYLATION COMPLEX. JRNL REF J.BIOL.CHEM. V. 301 10694 2025 JRNL REFN ESSN 1083-351X JRNL PMID 40930250 JRNL DOI 10.1016/J.JBC.2025.110694 REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, PHENIX, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.900 REMARK 3 NUMBER OF PARTICLES : 93643 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9OA6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-25. REMARK 100 THE DEPOSITION ID IS D_1000295179. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ZDHHC5/GOLGA7 COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 8000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -12 REMARK 465 ASP B -11 REMARK 465 TYR B -10 REMARK 465 LYS B -9 REMARK 465 ASP B -8 REMARK 465 ASP B -7 REMARK 465 ASP B -6 REMARK 465 ASP B -5 REMARK 465 LYS B -4 REMARK 465 SER B -3 REMARK 465 GLY B -2 REMARK 465 ARG B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 PRO B 3 REMARK 465 GLN B 4 REMARK 465 GLN B 5 REMARK 465 THR B 126 REMARK 465 ILE B 127 REMARK 465 TYR B 128 REMARK 465 GLU B 129 REMARK 465 ASP B 130 REMARK 465 ARG B 131 REMARK 465 GLY B 132 REMARK 465 MET B 133 REMARK 465 SER B 134 REMARK 465 SER B 135 REMARK 465 GLY B 136 REMARK 465 ARG B 137 REMARK 465 ALA B 138 REMARK 465 ALA B 139 REMARK 465 ALA B 140 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 LYS A 7 REMARK 465 ARG A 8 REMARK 465 PHE A 9 REMARK 465 LYS A 10 REMARK 465 PRO A 11 REMARK 465 SER A 12 REMARK 465 LYS A 13 REMARK 465 TYR A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 PRO A 266 REMARK 465 PRO A 267 REMARK 465 PHE A 268 REMARK 465 LEU A 269 REMARK 465 ARG A 270 REMARK 465 PRO A 271 REMARK 465 GLU A 272 REMARK 465 VAL A 273 REMARK 465 SER A 274 REMARK 465 ASP A 275 REMARK 465 GLY A 276 REMARK 465 GLN A 277 REMARK 465 ILE A 278 REMARK 465 THR A 279 REMARK 465 VAL A 280 REMARK 465 LYS A 281 REMARK 465 ILE A 282 REMARK 465 MET A 283 REMARK 465 ASP A 284 REMARK 465 ASN A 285 REMARK 465 GLY A 286 REMARK 465 ILE A 287 REMARK 465 GLN A 288 REMARK 465 GLY A 289 REMARK 465 GLU A 290 REMARK 465 LEU A 291 REMARK 465 ARG A 292 REMARK 465 ARG A 293 REMARK 465 THR A 294 REMARK 465 LYS A 295 REMARK 465 SER A 296 REMARK 465 LYS A 297 REMARK 465 GLY A 298 REMARK 465 SER A 299 REMARK 465 LEU A 300 REMARK 465 GLU A 301 REMARK 465 ILE A 302 REMARK 465 THR A 303 REMARK 465 GLU A 304 REMARK 465 SER A 305 REMARK 465 GLN A 306 REMARK 465 SER A 307 REMARK 465 ALA A 308 REMARK 465 ASP A 309 REMARK 465 ALA A 310 REMARK 465 GLU A 311 REMARK 465 PRO A 312 REMARK 465 PRO A 313 REMARK 465 PRO A 314 REMARK 465 PRO A 315 REMARK 465 PRO A 316 REMARK 465 LYS A 317 REMARK 465 PRO A 318 REMARK 465 ASP A 319 REMARK 465 LEU A 320 REMARK 465 SER A 321 REMARK 465 ARG A 322 REMARK 465 TYR A 323 REMARK 465 THR A 324 REMARK 465 GLY A 325 REMARK 465 LEU A 326 REMARK 465 ARG A 327 REMARK 465 THR A 328 REMARK 465 HIS A 329 REMARK 465 LEU A 330 REMARK 465 SER A 331 REMARK 465 LEU A 332 REMARK 465 ALA A 333 REMARK 465 THR A 334 REMARK 465 ASN A 335 REMARK 465 GLU A 336 REMARK 465 ASP A 337 REMARK 465 SER A 338 REMARK 465 SER A 339 REMARK 465 LEU A 340 REMARK 465 LEU A 341 REMARK 465 GLY A 342 REMARK 465 LYS A 343 REMARK 465 ASP A 344 REMARK 465 SER A 345 REMARK 465 PRO A 346 REMARK 465 PRO A 347 REMARK 465 THR A 348 REMARK 465 PRO A 349 REMARK 465 THR A 350 REMARK 465 MET A 351 REMARK 465 TYR A 352 REMARK 465 LYS A 353 REMARK 465 TYR A 354 REMARK 465 ARG A 355 REMARK 465 PRO A 356 REMARK 465 GLY A 357 REMARK 465 TYR A 358 REMARK 465 SER A 359 REMARK 465 SER A 360 REMARK 465 SER A 361 REMARK 465 SER A 362 REMARK 465 THR A 363 REMARK 465 SER A 364 REMARK 465 ALA A 365 REMARK 465 ALA A 366 REMARK 465 MET A 367 REMARK 465 PRO A 368 REMARK 465 HIS A 369 REMARK 465 SER A 370 REMARK 465 SER A 371 REMARK 465 SER A 372 REMARK 465 ALA A 373 REMARK 465 LYS A 374 REMARK 465 LEU A 375 REMARK 465 SER A 376 REMARK 465 ARG A 377 REMARK 465 GLY A 378 REMARK 465 ASP A 379 REMARK 465 SER A 380 REMARK 465 LEU A 381 REMARK 465 LYS A 382 REMARK 465 GLU A 383 REMARK 465 PRO A 384 REMARK 465 THR A 385 REMARK 465 SER A 386 REMARK 465 ILE A 387 REMARK 465 ALA A 388 REMARK 465 ASP A 389 REMARK 465 SER A 390 REMARK 465 SER A 391 REMARK 465 ARG A 392 REMARK 465 HIS A 393 REMARK 465 PRO A 394 REMARK 465 SER A 395 REMARK 465 TYR A 396 REMARK 465 ARG A 397 REMARK 465 SER A 398 REMARK 465 GLU A 399 REMARK 465 PRO A 400 REMARK 465 SER A 401 REMARK 465 LEU A 402 REMARK 465 GLU A 403 REMARK 465 PRO A 404 REMARK 465 GLU A 405 REMARK 465 SER A 406 REMARK 465 PHE A 407 REMARK 465 ARG A 408 REMARK 465 SER A 409 REMARK 465 PRO A 410 REMARK 465 THR A 411 REMARK 465 PHE A 412 REMARK 465 GLY A 413 REMARK 465 LYS A 414 REMARK 465 SER A 415 REMARK 465 PHE A 416 REMARK 465 HIS A 417 REMARK 465 PHE A 418 REMARK 465 ASP A 419 REMARK 465 PRO A 420 REMARK 465 LEU A 421 REMARK 465 SER A 422 REMARK 465 SER A 423 REMARK 465 GLY A 424 REMARK 465 SER A 425 REMARK 465 ARG A 426 REMARK 465 SER A 427 REMARK 465 SER A 428 REMARK 465 SER A 429 REMARK 465 LEU A 430 REMARK 465 LYS A 431 REMARK 465 SER A 432 REMARK 465 ALA A 433 REMARK 465 GLN A 434 REMARK 465 GLY A 435 REMARK 465 THR A 436 REMARK 465 GLY A 437 REMARK 465 PHE A 438 REMARK 465 GLU A 439 REMARK 465 LEU A 440 REMARK 465 GLY A 441 REMARK 465 GLN A 442 REMARK 465 LEU A 443 REMARK 465 GLN A 444 REMARK 465 SER A 445 REMARK 465 ILE A 446 REMARK 465 ARG A 447 REMARK 465 SER A 448 REMARK 465 GLU A 449 REMARK 465 GLY A 450 REMARK 465 THR A 451 REMARK 465 THR A 452 REMARK 465 SER A 453 REMARK 465 THR A 454 REMARK 465 SER A 455 REMARK 465 TYR A 456 REMARK 465 LYS A 457 REMARK 465 SER A 458 REMARK 465 LEU A 459 REMARK 465 ALA A 460 REMARK 465 ASN A 461 REMARK 465 GLN A 462 REMARK 465 THR A 463 REMARK 465 ARG A 464 REMARK 465 ASN A 465 REMARK 465 GLY A 466 REMARK 465 SER A 467 REMARK 465 LEU A 468 REMARK 465 SER A 469 REMARK 465 TYR A 470 REMARK 465 ASP A 471 REMARK 465 SER A 472 REMARK 465 LEU A 473 REMARK 465 LEU A 474 REMARK 465 THR A 475 REMARK 465 PRO A 476 REMARK 465 SER A 477 REMARK 465 ASP A 478 REMARK 465 SER A 479 REMARK 465 PRO A 480 REMARK 465 ASP A 481 REMARK 465 PHE A 482 REMARK 465 GLU A 483 REMARK 465 SER A 484 REMARK 465 VAL A 485 REMARK 465 GLN A 486 REMARK 465 ALA A 487 REMARK 465 GLY A 488 REMARK 465 PRO A 489 REMARK 465 GLU A 490 REMARK 465 PRO A 491 REMARK 465 ASP A 492 REMARK 465 PRO A 493 REMARK 465 PRO A 494 REMARK 465 LEU A 495 REMARK 465 GLY A 496 REMARK 465 TYR A 497 REMARK 465 THR A 498 REMARK 465 SER A 499 REMARK 465 PRO A 500 REMARK 465 PHE A 501 REMARK 465 LEU A 502 REMARK 465 SER A 503 REMARK 465 ALA A 504 REMARK 465 ARG A 505 REMARK 465 LEU A 506 REMARK 465 ALA A 507 REMARK 465 GLN A 508 REMARK 465 GLN A 509 REMARK 465 ARG A 510 REMARK 465 GLU A 511 REMARK 465 ALA A 512 REMARK 465 GLU A 513 REMARK 465 ARG A 514 REMARK 465 HIS A 515 REMARK 465 PRO A 516 REMARK 465 ARG A 517 REMARK 465 LEU A 518 REMARK 465 LEU A 519 REMARK 465 PRO A 520 REMARK 465 THR A 521 REMARK 465 GLY A 522 REMARK 465 PRO A 523 REMARK 465 PRO A 524 REMARK 465 HIS A 525 REMARK 465 ARG A 526 REMARK 465 GLU A 527 REMARK 465 PRO A 528 REMARK 465 SER A 529 REMARK 465 PRO A 530 REMARK 465 VAL A 531 REMARK 465 ARG A 532 REMARK 465 TYR A 533 REMARK 465 ASP A 534 REMARK 465 ASN A 535 REMARK 465 LEU A 536 REMARK 465 SER A 537 REMARK 465 ARG A 538 REMARK 465 HIS A 539 REMARK 465 ILE A 540 REMARK 465 VAL A 541 REMARK 465 ALA A 542 REMARK 465 SER A 543 REMARK 465 LEU A 544 REMARK 465 GLN A 545 REMARK 465 GLU A 546 REMARK 465 ARG A 547 REMARK 465 GLU A 548 REMARK 465 LYS A 549 REMARK 465 LEU A 550 REMARK 465 LEU A 551 REMARK 465 ARG A 552 REMARK 465 GLN A 553 REMARK 465 SER A 554 REMARK 465 PRO A 555 REMARK 465 PRO A 556 REMARK 465 LEU A 557 REMARK 465 ALA A 558 REMARK 465 GLY A 559 REMARK 465 ARG A 560 REMARK 465 GLU A 561 REMARK 465 GLU A 562 REMARK 465 GLU A 563 REMARK 465 PRO A 564 REMARK 465 GLY A 565 REMARK 465 LEU A 566 REMARK 465 GLY A 567 REMARK 465 ASP A 568 REMARK 465 SER A 569 REMARK 465 GLY A 570 REMARK 465 ILE A 571 REMARK 465 GLN A 572 REMARK 465 SER A 573 REMARK 465 THR A 574 REMARK 465 PRO A 575 REMARK 465 GLY A 576 REMARK 465 SER A 577 REMARK 465 GLY A 578 REMARK 465 HIS A 579 REMARK 465 ALA A 580 REMARK 465 PRO A 581 REMARK 465 ARG A 582 REMARK 465 THR A 583 REMARK 465 SER A 584 REMARK 465 SER A 585 REMARK 465 SER A 586 REMARK 465 SER A 587 REMARK 465 ASP A 588 REMARK 465 ASP A 589 REMARK 465 SER A 590 REMARK 465 LYS A 591 REMARK 465 ARG A 592 REMARK 465 SER A 593 REMARK 465 PRO A 594 REMARK 465 LEU A 595 REMARK 465 SER A 596 REMARK 465 LYS A 597 REMARK 465 THR A 598 REMARK 465 PRO A 599 REMARK 465 LEU A 600 REMARK 465 GLY A 601 REMARK 465 ARG A 602 REMARK 465 PRO A 603 REMARK 465 ALA A 604 REMARK 465 VAL A 605 REMARK 465 PRO A 606 REMARK 465 ARG A 607 REMARK 465 PHE A 608 REMARK 465 GLY A 609 REMARK 465 LYS A 610 REMARK 465 PRO A 611 REMARK 465 ASP A 612 REMARK 465 GLY A 613 REMARK 465 LEU A 614 REMARK 465 ARG A 615 REMARK 465 SER A 616 REMARK 465 ARG A 617 REMARK 465 GLY A 618 REMARK 465 LEU A 619 REMARK 465 GLY A 620 REMARK 465 SER A 621 REMARK 465 PRO A 622 REMARK 465 GLU A 623 REMARK 465 PRO A 624 REMARK 465 GLY A 625 REMARK 465 THR A 626 REMARK 465 THR A 627 REMARK 465 ALA A 628 REMARK 465 PRO A 629 REMARK 465 TYR A 630 REMARK 465 LEU A 631 REMARK 465 GLY A 632 REMARK 465 ARG A 633 REMARK 465 SER A 634 REMARK 465 ILE A 635 REMARK 465 SER A 636 REMARK 465 TYR A 637 REMARK 465 SER A 638 REMARK 465 SER A 639 REMARK 465 GLN A 640 REMARK 465 LYS A 641 REMARK 465 ALA A 642 REMARK 465 PRO A 643 REMARK 465 SER A 644 REMARK 465 GLY A 645 REMARK 465 VAL A 646 REMARK 465 SER A 647 REMARK 465 GLU A 648 REMARK 465 THR A 649 REMARK 465 GLU A 650 REMARK 465 GLU A 651 REMARK 465 VAL A 652 REMARK 465 ALA A 653 REMARK 465 LEU A 654 REMARK 465 GLN A 655 REMARK 465 PRO A 656 REMARK 465 LEU A 657 REMARK 465 LEU A 658 REMARK 465 THR A 659 REMARK 465 PRO A 660 REMARK 465 LYS A 661 REMARK 465 ASP A 662 REMARK 465 GLU A 663 REMARK 465 VAL A 664 REMARK 465 GLN A 665 REMARK 465 LEU A 666 REMARK 465 LYS A 667 REMARK 465 THR A 668 REMARK 465 THR A 669 REMARK 465 TYR A 670 REMARK 465 SER A 671 REMARK 465 LYS A 672 REMARK 465 SER A 673 REMARK 465 ASN A 674 REMARK 465 GLY A 675 REMARK 465 GLN A 676 REMARK 465 PRO A 677 REMARK 465 LYS A 678 REMARK 465 SER A 679 REMARK 465 ILE A 680 REMARK 465 GLY A 681 REMARK 465 SER A 682 REMARK 465 ALA A 683 REMARK 465 SER A 684 REMARK 465 PRO A 685 REMARK 465 GLY A 686 REMARK 465 PRO A 687 REMARK 465 GLY A 688 REMARK 465 GLN A 689 REMARK 465 PRO A 690 REMARK 465 PRO A 691 REMARK 465 LEU A 692 REMARK 465 SER A 693 REMARK 465 SER A 694 REMARK 465 PRO A 695 REMARK 465 THR A 696 REMARK 465 ARG A 697 REMARK 465 GLY A 698 REMARK 465 GLY A 699 REMARK 465 VAL A 700 REMARK 465 LYS A 701 REMARK 465 LYS A 702 REMARK 465 VAL A 703 REMARK 465 SER A 704 REMARK 465 GLY A 705 REMARK 465 VAL A 706 REMARK 465 GLY A 707 REMARK 465 GLY A 708 REMARK 465 THR A 709 REMARK 465 THR A 710 REMARK 465 TYR A 711 REMARK 465 GLU A 712 REMARK 465 ILE A 713 REMARK 465 SER A 714 REMARK 465 VAL A 715 REMARK 465 ALA A 716 REMARK 465 ALA A 717 REMARK 465 ALA A 718 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 THR A 261 OG1 CG2 REMARK 470 ILE A 262 CG1 CG2 CD1 REMARK 470 VAL A 263 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 106 NE2 HIS A 119 1.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 36 -6.30 66.49 REMARK 500 THR A 35 -39.31 -130.24 REMARK 500 CYS A 36 49.92 -145.29 REMARK 500 VAL A 43 -131.51 172.11 REMARK 500 MET A 68 143.20 -172.44 REMARK 500 PRO A 74 44.38 -80.93 REMARK 500 ASP A 81 -124.83 62.13 REMARK 500 PHE A 86 -60.85 -93.67 REMARK 500 ARG A 113 80.83 52.69 REMARK 500 PRO A 114 157.83 -47.62 REMARK 500 SER A 121 -85.94 52.33 REMARK 500 GLU A 128 -162.15 -79.00 REMARK 500 VAL A 181 -88.74 62.24 REMARK 500 THR A 217 -95.87 48.69 REMARK 500 PHE A 232 51.71 -93.81 REMARK 500 ASN A 234 -134.03 55.82 REMARK 500 CYS A 236 -71.60 68.75 REMARK 500 THR A 261 -61.36 -100.00 REMARK 500 ILE A 264 64.25 61.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 106 SG REMARK 620 2 CYS A 109 SG 109.7 REMARK 620 3 HIS A 119 ND1 100.3 103.8 REMARK 620 4 HIS A 119 NE2 45.8 122.1 54.8 REMARK 620 5 CYS A 126 SG 114.9 114.2 112.7 123.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 120 SG REMARK 620 2 CYS A 123 SG 111.5 REMARK 620 3 HIS A 133 ND1 78.2 114.6 REMARK 620 4 CYS A 140 SG 106.6 112.7 126.3 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-70274 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE ZDHHC5-GOLGA7 COMPLEX DBREF 9OA6 B 1 137 UNP Q7Z5G4 GOGA7_HUMAN 1 137 DBREF 9OA6 A 1 715 UNP Q8VDZ4 ZDHC5_MOUSE 1 715 SEQADV 9OA6 MET B -12 UNP Q7Z5G4 INITIATING METHIONINE SEQADV 9OA6 ASP B -11 UNP Q7Z5G4 EXPRESSION TAG SEQADV 9OA6 TYR B -10 UNP Q7Z5G4 EXPRESSION TAG SEQADV 9OA6 LYS B -9 UNP Q7Z5G4 EXPRESSION TAG SEQADV 9OA6 ASP B -8 UNP Q7Z5G4 EXPRESSION TAG SEQADV 9OA6 ASP B -7 UNP Q7Z5G4 EXPRESSION TAG SEQADV 9OA6 ASP B -6 UNP Q7Z5G4 EXPRESSION TAG SEQADV 9OA6 ASP B -5 UNP Q7Z5G4 EXPRESSION TAG SEQADV 9OA6 LYS B -4 UNP Q7Z5G4 EXPRESSION TAG SEQADV 9OA6 SER B -3 UNP Q7Z5G4 EXPRESSION TAG SEQADV 9OA6 GLY B -2 UNP Q7Z5G4 EXPRESSION TAG SEQADV 9OA6 ARG B -1 UNP Q7Z5G4 EXPRESSION TAG SEQADV 9OA6 ALA B 0 UNP Q7Z5G4 EXPRESSION TAG SEQADV 9OA6 ALA B 138 UNP Q7Z5G4 EXPRESSION TAG SEQADV 9OA6 ALA B 139 UNP Q7Z5G4 EXPRESSION TAG SEQADV 9OA6 ALA B 140 UNP Q7Z5G4 EXPRESSION TAG SEQADV 9OA6 ALA A 716 UNP Q8VDZ4 EXPRESSION TAG SEQADV 9OA6 ALA A 717 UNP Q8VDZ4 EXPRESSION TAG SEQADV 9OA6 ALA A 718 UNP Q8VDZ4 EXPRESSION TAG SEQRES 1 B 153 MET ASP TYR LYS ASP ASP ASP ASP LYS SER GLY ARG ALA SEQRES 2 B 153 MET ARG PRO GLN GLN ALA PRO VAL SER GLY LYS VAL PHE SEQRES 3 B 153 ILE GLN ARG ASP TYR SER SER GLY THR ARG CYS GLN PHE SEQRES 4 B 153 GLN THR LYS PHE PRO ALA GLU LEU GLU ASN ARG ILE ASP SEQRES 5 B 153 ARG GLN GLN PHE GLU GLU THR VAL ARG THR LEU ASN ASN SEQRES 6 B 153 LEU TYR ALA GLU ALA GLU LYS LEU GLY GLY GLN SER TYR SEQRES 7 B 153 LEU GLU GLY CYS LEU ALA CYS LEU THR ALA TYR THR ILE SEQRES 8 B 153 PHE LEU CYS MET GLU THR HIS TYR GLU LYS VAL LEU LYS SEQRES 9 B 153 LYS VAL SER LYS TYR ILE GLN GLU GLN ASN GLU LYS ILE SEQRES 10 B 153 TYR ALA PRO GLN GLY LEU LEU LEU THR ASP PRO ILE GLU SEQRES 11 B 153 ARG GLY LEU ARG VAL ILE GLU ILE THR ILE TYR GLU ASP SEQRES 12 B 153 ARG GLY MET SER SER GLY ARG ALA ALA ALA SEQRES 1 A 718 MET PRO ALA GLU SER GLY LYS ARG PHE LYS PRO SER LYS SEQRES 2 A 718 TYR VAL PRO VAL SER ALA ALA ALA ILE PHE LEU VAL GLY SEQRES 3 A 718 ALA THR THR LEU PHE PHE ALA PHE THR CYS PRO GLY LEU SEQRES 4 A 718 SER LEU ASN VAL SER PRO ALA VAL PRO ILE TYR ASN ALA SEQRES 5 A 718 ILE MET PHE LEU PHE VAL LEU ALA ASN PHE SER MET ALA SEQRES 6 A 718 THR PHE MET ASP PRO GLY ILE PHE PRO ARG ALA GLU GLU SEQRES 7 A 718 ASP GLU ASP LYS GLU ASP ASP PHE ARG ALA PRO LEU TYR SEQRES 8 A 718 LYS THR VAL GLU ILE LYS GLY ILE GLN VAL ARG MET LYS SEQRES 9 A 718 TRP CYS ALA THR CYS ARG PHE TYR ARG PRO PRO ARG CYS SEQRES 10 A 718 SER HIS CYS SER VAL CYS ASP ASN CYS VAL GLU GLU PHE SEQRES 11 A 718 ASP HIS HIS CYS PRO TRP VAL ASN ASN CYS ILE GLY ARG SEQRES 12 A 718 ARG ASN TYR ARG TYR PHE PHE LEU PHE LEU LEU SER LEU SEQRES 13 A 718 THR ALA HIS ILE MET GLY VAL PHE GLY PHE GLY LEU LEU SEQRES 14 A 718 TYR VAL LEU TYR HIS ILE GLU GLU LEU SER GLY VAL ARG SEQRES 15 A 718 THR ALA VAL THR MET ALA VAL MET CYS VAL ALA GLY LEU SEQRES 16 A 718 PHE PHE ILE PRO VAL ALA GLY LEU THR GLY PHE HIS VAL SEQRES 17 A 718 VAL LEU VAL ALA ARG GLY ARG THR THR ASN GLU GLN VAL SEQRES 18 A 718 THR GLY LYS PHE ARG GLY GLY VAL ASN PRO PHE THR ASN SEQRES 19 A 718 GLY CYS CYS ASN ASN VAL SER ARG VAL LEU CYS SER SER SEQRES 20 A 718 PRO ALA PRO ARG TYR LEU GLY ARG PRO LYS LYS GLU LYS SEQRES 21 A 718 THR ILE VAL ILE ARG PRO PRO PHE LEU ARG PRO GLU VAL SEQRES 22 A 718 SER ASP GLY GLN ILE THR VAL LYS ILE MET ASP ASN GLY SEQRES 23 A 718 ILE GLN GLY GLU LEU ARG ARG THR LYS SER LYS GLY SER SEQRES 24 A 718 LEU GLU ILE THR GLU SER GLN SER ALA ASP ALA GLU PRO SEQRES 25 A 718 PRO PRO PRO PRO LYS PRO ASP LEU SER ARG TYR THR GLY SEQRES 26 A 718 LEU ARG THR HIS LEU SER LEU ALA THR ASN GLU ASP SER SEQRES 27 A 718 SER LEU LEU GLY LYS ASP SER PRO PRO THR PRO THR MET SEQRES 28 A 718 TYR LYS TYR ARG PRO GLY TYR SER SER SER SER THR SER SEQRES 29 A 718 ALA ALA MET PRO HIS SER SER SER ALA LYS LEU SER ARG SEQRES 30 A 718 GLY ASP SER LEU LYS GLU PRO THR SER ILE ALA ASP SER SEQRES 31 A 718 SER ARG HIS PRO SER TYR ARG SER GLU PRO SER LEU GLU SEQRES 32 A 718 PRO GLU SER PHE ARG SER PRO THR PHE GLY LYS SER PHE SEQRES 33 A 718 HIS PHE ASP PRO LEU SER SER GLY SER ARG SER SER SER SEQRES 34 A 718 LEU LYS SER ALA GLN GLY THR GLY PHE GLU LEU GLY GLN SEQRES 35 A 718 LEU GLN SER ILE ARG SER GLU GLY THR THR SER THR SER SEQRES 36 A 718 TYR LYS SER LEU ALA ASN GLN THR ARG ASN GLY SER LEU SEQRES 37 A 718 SER TYR ASP SER LEU LEU THR PRO SER ASP SER PRO ASP SEQRES 38 A 718 PHE GLU SER VAL GLN ALA GLY PRO GLU PRO ASP PRO PRO SEQRES 39 A 718 LEU GLY TYR THR SER PRO PHE LEU SER ALA ARG LEU ALA SEQRES 40 A 718 GLN GLN ARG GLU ALA GLU ARG HIS PRO ARG LEU LEU PRO SEQRES 41 A 718 THR GLY PRO PRO HIS ARG GLU PRO SER PRO VAL ARG TYR SEQRES 42 A 718 ASP ASN LEU SER ARG HIS ILE VAL ALA SER LEU GLN GLU SEQRES 43 A 718 ARG GLU LYS LEU LEU ARG GLN SER PRO PRO LEU ALA GLY SEQRES 44 A 718 ARG GLU GLU GLU PRO GLY LEU GLY ASP SER GLY ILE GLN SEQRES 45 A 718 SER THR PRO GLY SER GLY HIS ALA PRO ARG THR SER SER SEQRES 46 A 718 SER SER ASP ASP SER LYS ARG SER PRO LEU SER LYS THR SEQRES 47 A 718 PRO LEU GLY ARG PRO ALA VAL PRO ARG PHE GLY LYS PRO SEQRES 48 A 718 ASP GLY LEU ARG SER ARG GLY LEU GLY SER PRO GLU PRO SEQRES 49 A 718 GLY THR THR ALA PRO TYR LEU GLY ARG SER ILE SER TYR SEQRES 50 A 718 SER SER GLN LYS ALA PRO SER GLY VAL SER GLU THR GLU SEQRES 51 A 718 GLU VAL ALA LEU GLN PRO LEU LEU THR PRO LYS ASP GLU SEQRES 52 A 718 VAL GLN LEU LYS THR THR TYR SER LYS SER ASN GLY GLN SEQRES 53 A 718 PRO LYS SER ILE GLY SER ALA SER PRO GLY PRO GLY GLN SEQRES 54 A 718 PRO PRO LEU SER SER PRO THR ARG GLY GLY VAL LYS LYS SEQRES 55 A 718 VAL SER GLY VAL GLY GLY THR THR TYR GLU ILE SER VAL SEQRES 56 A 718 ALA ALA ALA HET ZN A 801 1 HET ZN A 802 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) HELIX 1 AA1 PRO B 31 GLU B 35 5 5 HELIX 2 AA2 ASP B 39 LYS B 59 1 21 HELIX 3 AA3 GLY B 61 THR B 74 1 14 HELIX 4 AA4 TYR B 76 MET B 82 1 7 HELIX 5 AA5 THR B 84 ILE B 104 1 21 HELIX 6 AA6 ALA A 21 THR A 35 1 15 HELIX 7 AA7 VAL A 47 TYR A 50 5 4 HELIX 8 AA8 ASN A 51 PHE A 67 1 17 HELIX 9 AA9 CYS A 120 ASP A 124 5 5 HELIX 10 AB1 ASN A 145 GLY A 167 1 23 HELIX 11 AB2 LEU A 168 TYR A 173 1 6 HELIX 12 AB3 ARG A 182 ARG A 213 1 32 HELIX 13 AB4 THR A 217 THR A 222 1 6 HELIX 14 AB5 CYS A 236 CYS A 245 1 10 SHEET 1 AA1 2 VAL B 12 ILE B 14 0 SHEET 2 AA1 2 ILE B 123 ILE B 125 -1 O ILE B 125 N VAL B 12 SHEET 1 AA2 2 THR A 93 ILE A 96 0 SHEET 2 AA2 2 ILE A 99 ARG A 102 -1 O ILE A 99 N ILE A 96 SHEET 1 AA3 2 HIS A 132 CYS A 134 0 SHEET 2 AA3 2 ASN A 139 ILE A 141 -1 O ILE A 141 N HIS A 132 LINK SG CYS A 106 ZN ZN A 801 1555 1555 2.32 LINK SG CYS A 109 ZN ZN A 801 1555 1555 2.32 LINK ND1 HIS A 119 ZN ZN A 801 1555 1555 2.50 LINK NE2 HIS A 119 ZN ZN A 801 1555 1555 2.08 LINK SG CYS A 120 ZN ZN A 802 1555 1555 2.31 LINK SG CYS A 123 ZN ZN A 802 1555 1555 2.33 LINK SG CYS A 126 ZN ZN A 801 1555 1555 2.33 LINK ND1 HIS A 133 ZN ZN A 802 1555 1555 2.12 LINK SG CYS A 140 ZN ZN A 802 1555 1555 2.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 1676 2910 CONECT 1694 2910 CONECT 1783 2910 CONECT 1786 2910 CONECT 1792 2911 CONECT 1811 2911 CONECT 1833 2910 CONECT 1894 2911 CONECT 1953 2911 CONECT 2910 1676 1694 1783 1786 CONECT 2910 1833 CONECT 2911 1792 1811 1894 1953 MASTER 687 0 2 14 6 0 0 6 2909 2 12 68 END