HEADER VIRUS LIKE PARTICLE 02-MAY-25 9OH5 TITLE CRYO-EM STRUCTURE OF THE ASSEMBLED MS2 CPM58 VLP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MS2 CPM58; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CP,COAT PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE MS2; SOURCE 3 ORGANISM_TAXID: 12022; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIOPHAGE, CIRCULAR PERMUTATION, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR S.LIANG,J.JUNG,D.TULLMAN-ERCEK REVDAT 2 26-NOV-25 9OH5 1 JRNL REVDAT 1 05-NOV-25 9OH5 0 JRNL AUTH S.LIANG,K.BUTANEY,D.DE CASTRO ASSUMPCAO,J.JUNG,N.W.KENNEDY, JRNL AUTH 2 D.TULLMAN-ERCEK JRNL TITL SYNTHETIC REWIRING OF VIRUS-LIKE PARTICLES VIA CIRCULAR JRNL TITL 2 PERMUTATION ENABLES MODULAR PEPTIDE DISPLAY AND PROTEIN JRNL TITL 3 ENCAPSULATION. JRNL REF ACS NANO V. 19 39168 2025 JRNL REFN ESSN 1936-086X JRNL PMID 41159643 JRNL DOI 10.1021/ACSNANO.5C12293 REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, COOT, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1ZDI REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.620 REMARK 3 NUMBER OF PARTICLES : 109941 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9OH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1000295565. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ESCHERICHIA PHAGE MS2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.20 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 5849 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : TFS FALCON 4I (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 600.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 130000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.809017 0.500000 228.86400 REMARK 350 BIOMT2 2 0.809017 0.500000 0.309017 -141.44573 REMARK 350 BIOMT3 2 -0.500000 0.309017 0.809017 87.41827 REMARK 350 BIOMT1 3 -0.809017 -0.500000 0.309017 457.72800 REMARK 350 BIOMT2 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 3 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.500000 -0.309017 370.30973 REMARK 350 BIOMT2 4 -0.500000 -0.309017 0.809017 228.86400 REMARK 350 BIOMT3 4 0.309017 0.809017 0.500000 -141.44573 REMARK 350 BIOMT1 5 0.309017 0.809017 -0.500000 87.41827 REMARK 350 BIOMT2 5 -0.809017 0.500000 0.309017 228.86400 REMARK 350 BIOMT3 5 0.500000 0.309017 0.809017 -141.44573 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 457.72800 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 457.72800 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.809017 -0.500000 228.86400 REMARK 350 BIOMT2 7 -0.809017 -0.500000 -0.309017 599.17373 REMARK 350 BIOMT3 7 -0.500000 0.309017 0.809017 87.41827 REMARK 350 BIOMT1 8 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.309017 -0.809017 457.72800 REMARK 350 BIOMT3 8 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.809017 -0.500000 0.309017 87.41827 REMARK 350 BIOMT2 9 0.500000 0.309017 -0.809017 228.86400 REMARK 350 BIOMT3 9 0.309017 0.809017 0.500000 -141.44573 REMARK 350 BIOMT1 10 -0.309017 -0.809017 0.500000 370.30973 REMARK 350 BIOMT2 10 0.809017 -0.500000 -0.309017 228.86400 REMARK 350 BIOMT3 10 0.500000 0.309017 0.809017 -141.44573 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 457.72800 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 457.72800 REMARK 350 BIOMT1 12 -0.309017 0.809017 -0.500000 228.86400 REMARK 350 BIOMT2 12 0.809017 0.500000 0.309017 -141.44573 REMARK 350 BIOMT3 12 0.500000 -0.309017 -0.809017 370.30973 REMARK 350 BIOMT1 13 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 13 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 13 0.309017 -0.809017 -0.500000 457.72800 REMARK 350 BIOMT1 14 0.809017 -0.500000 0.309017 87.41827 REMARK 350 BIOMT2 14 -0.500000 -0.309017 0.809017 228.86400 REMARK 350 BIOMT3 14 -0.309017 -0.809017 -0.500000 599.17373 REMARK 350 BIOMT1 15 -0.309017 -0.809017 0.500000 370.30973 REMARK 350 BIOMT2 15 -0.809017 0.500000 0.309017 228.86400 REMARK 350 BIOMT3 15 -0.500000 -0.309017 -0.809017 599.17373 REMARK 350 BIOMT1 16 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 457.72800 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 457.72800 REMARK 350 BIOMT1 17 0.309017 -0.809017 0.500000 228.86400 REMARK 350 BIOMT2 17 -0.809017 -0.500000 -0.309017 599.17373 REMARK 350 BIOMT3 17 0.500000 -0.309017 -0.809017 370.30973 REMARK 350 BIOMT1 18 -0.809017 -0.500000 0.309017 457.72800 REMARK 350 BIOMT2 18 -0.500000 0.309017 -0.809017 457.72800 REMARK 350 BIOMT3 18 0.309017 -0.809017 -0.500000 457.72800 REMARK 350 BIOMT1 19 -0.809017 0.500000 -0.309017 370.30973 REMARK 350 BIOMT2 19 0.500000 0.309017 -0.809017 228.86400 REMARK 350 BIOMT3 19 -0.309017 -0.809017 -0.500000 599.17373 REMARK 350 BIOMT1 20 0.309017 0.809017 -0.500000 87.41827 REMARK 350 BIOMT2 20 0.809017 -0.500000 -0.309017 228.86400 REMARK 350 BIOMT3 20 -0.500000 -0.309017 -0.809017 599.17373 REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.500000 0.309017 0.809017 87.41827 REMARK 350 BIOMT2 22 0.309017 -0.809017 0.500000 228.86400 REMARK 350 BIOMT3 22 0.809017 0.500000 0.309017 -141.44573 REMARK 350 BIOMT1 23 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.500000 0.309017 457.72800 REMARK 350 BIOMT3 23 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 -141.44573 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 370.30973 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 228.86400 REMARK 350 BIOMT1 25 0.500000 0.309017 0.809017 -141.44573 REMARK 350 BIOMT2 25 0.309017 0.809017 -0.500000 87.41827 REMARK 350 BIOMT3 25 -0.809017 0.500000 0.309017 228.86400 REMARK 350 BIOMT1 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 26 -1.000000 0.000000 0.000000 457.72800 REMARK 350 BIOMT3 26 0.000000 -1.000000 0.000000 457.72800 REMARK 350 BIOMT1 27 -0.500000 0.309017 0.809017 87.41827 REMARK 350 BIOMT2 27 -0.309017 0.809017 -0.500000 228.86400 REMARK 350 BIOMT3 27 -0.809017 -0.500000 -0.309017 599.17373 REMARK 350 BIOMT1 28 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 28 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 28 -0.500000 0.309017 -0.809017 457.72800 REMARK 350 BIOMT1 29 0.309017 0.809017 0.500000 -141.44573 REMARK 350 BIOMT2 29 0.809017 -0.500000 0.309017 87.41827 REMARK 350 BIOMT3 29 0.500000 0.309017 -0.809017 228.86400 REMARK 350 BIOMT1 30 0.500000 0.309017 0.809017 -141.44573 REMARK 350 BIOMT2 30 -0.309017 -0.809017 0.500000 370.30973 REMARK 350 BIOMT3 30 0.809017 -0.500000 -0.309017 228.86400 REMARK 350 BIOMT1 31 0.000000 0.000000 -1.000000 457.72800 REMARK 350 BIOMT2 31 -1.000000 0.000000 0.000000 457.72800 REMARK 350 BIOMT3 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.500000 -0.309017 -0.809017 370.30973 REMARK 350 BIOMT2 32 -0.309017 0.809017 -0.500000 228.86400 REMARK 350 BIOMT3 32 0.809017 0.500000 0.309017 -141.44573 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 457.72800 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.309017 -0.809017 -0.500000 599.17373 REMARK 350 BIOMT2 34 0.809017 -0.500000 0.309017 87.41827 REMARK 350 BIOMT3 34 -0.500000 -0.309017 0.809017 228.86400 REMARK 350 BIOMT1 35 -0.500000 -0.309017 -0.809017 599.17373 REMARK 350 BIOMT2 35 -0.309017 -0.809017 0.500000 370.30973 REMARK 350 BIOMT3 35 -0.809017 0.500000 0.309017 228.86400 REMARK 350 BIOMT1 36 0.000000 0.000000 -1.000000 457.72800 REMARK 350 BIOMT2 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 457.72800 REMARK 350 BIOMT1 37 0.500000 -0.309017 -0.809017 370.30973 REMARK 350 BIOMT2 37 0.309017 -0.809017 0.500000 228.86400 REMARK 350 BIOMT3 37 -0.809017 -0.500000 -0.309017 599.17373 REMARK 350 BIOMT1 38 0.309017 -0.809017 -0.500000 457.72800 REMARK 350 BIOMT2 38 -0.809017 -0.500000 0.309017 457.72800 REMARK 350 BIOMT3 38 -0.500000 0.309017 -0.809017 457.72800 REMARK 350 BIOMT1 39 -0.309017 -0.809017 -0.500000 599.17373 REMARK 350 BIOMT2 39 -0.809017 0.500000 -0.309017 370.30973 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 228.86400 REMARK 350 BIOMT1 40 -0.500000 -0.309017 -0.809017 599.17373 REMARK 350 BIOMT2 40 0.309017 0.809017 -0.500000 87.41827 REMARK 350 BIOMT3 40 0.809017 -0.500000 -0.309017 228.86400 REMARK 350 BIOMT1 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.809017 0.500000 0.309017 -141.44573 REMARK 350 BIOMT2 42 -0.500000 0.309017 0.809017 87.41827 REMARK 350 BIOMT3 42 0.309017 -0.809017 0.500000 228.86400 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 43 -0.809017 -0.500000 0.309017 457.72800 REMARK 350 BIOMT1 44 -0.500000 -0.309017 0.809017 228.86400 REMARK 350 BIOMT2 44 0.309017 0.809017 0.500000 -141.44573 REMARK 350 BIOMT3 44 -0.809017 0.500000 -0.309017 370.30973 REMARK 350 BIOMT1 45 -0.809017 0.500000 0.309017 228.86400 REMARK 350 BIOMT2 45 0.500000 0.309017 0.809017 -141.44573 REMARK 350 BIOMT3 45 0.309017 0.809017 -0.500000 87.41827 REMARK 350 BIOMT1 46 0.000000 -1.000000 0.000000 457.72800 REMARK 350 BIOMT2 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 46 -1.000000 0.000000 0.000000 457.72800 REMARK 350 BIOMT1 47 -0.809017 -0.500000 -0.309017 599.17373 REMARK 350 BIOMT2 47 -0.500000 0.309017 0.809017 87.41827 REMARK 350 BIOMT3 47 -0.309017 0.809017 -0.500000 228.86400 REMARK 350 BIOMT1 48 -0.500000 0.309017 -0.809017 457.72800 REMARK 350 BIOMT2 48 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 48 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 -0.809017 228.86400 REMARK 350 BIOMT2 49 0.309017 0.809017 0.500000 -141.44573 REMARK 350 BIOMT3 49 0.809017 -0.500000 0.309017 87.41827 REMARK 350 BIOMT1 50 0.809017 -0.500000 -0.309017 228.86400 REMARK 350 BIOMT2 50 0.500000 0.309017 0.809017 -141.44573 REMARK 350 BIOMT3 50 -0.309017 -0.809017 0.500000 370.30973 REMARK 350 BIOMT1 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 51 0.000000 0.000000 -1.000000 457.72800 REMARK 350 BIOMT3 51 -1.000000 0.000000 0.000000 457.72800 REMARK 350 BIOMT1 52 0.809017 0.500000 0.309017 -141.44573 REMARK 350 BIOMT2 52 0.500000 -0.309017 -0.809017 370.30973 REMARK 350 BIOMT3 52 -0.309017 0.809017 -0.500000 228.86400 REMARK 350 BIOMT1 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 53 0.309017 -0.809017 -0.500000 457.72800 REMARK 350 BIOMT3 53 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.500000 -0.309017 0.809017 228.86400 REMARK 350 BIOMT2 54 -0.309017 -0.809017 -0.500000 599.17373 REMARK 350 BIOMT3 54 0.809017 -0.500000 0.309017 87.41827 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 228.86400 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 599.17373 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 370.30973 REMARK 350 BIOMT1 56 0.000000 -1.000000 0.000000 457.72800 REMARK 350 BIOMT2 56 0.000000 0.000000 -1.000000 457.72800 REMARK 350 BIOMT3 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 599.17373 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 370.30973 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 228.86400 REMARK 350 BIOMT1 58 -0.500000 0.309017 -0.809017 457.72800 REMARK 350 BIOMT2 58 0.309017 -0.809017 -0.500000 457.72800 REMARK 350 BIOMT3 58 -0.809017 -0.500000 0.309017 457.72800 REMARK 350 BIOMT1 59 0.500000 0.309017 -0.809017 228.86400 REMARK 350 BIOMT2 59 -0.309017 -0.809017 -0.500000 599.17373 REMARK 350 BIOMT3 59 -0.809017 0.500000 -0.309017 370.30973 REMARK 350 BIOMT1 60 0.809017 -0.500000 -0.309017 228.86400 REMARK 350 BIOMT2 60 -0.500000 -0.309017 -0.809017 599.17373 REMARK 350 BIOMT3 60 0.309017 0.809017 -0.500000 87.41827 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 73 REMARK 465 SER B 74 REMARK 465 ASN B 75 REMARK 465 PHE B 76 REMARK 465 THR B 77 REMARK 465 GLN B 78 REMARK 465 PHE B 79 REMARK 465 VAL B 80 REMARK 465 LEU B 81 REMARK 465 VAL B 82 REMARK 465 ASP B 83 REMARK 465 ASN B 84 REMARK 465 GLY B 85 REMARK 465 GLY B 86 REMARK 465 THR B 87 REMARK 465 GLY B 88 REMARK 465 ASP B 89 REMARK 465 VAL B 90 REMARK 465 THR B 91 REMARK 465 VAL B 92 REMARK 465 ALA B 93 REMARK 465 PRO B 94 REMARK 465 SER B 95 REMARK 465 ASN B 96 REMARK 465 PHE B 97 REMARK 465 ALA B 98 REMARK 465 ASN B 99 REMARK 465 GLY B 100 REMARK 465 VAL B 101 REMARK 465 ALA B 102 REMARK 465 GLU B 103 REMARK 465 TRP B 104 REMARK 465 ILE B 105 REMARK 465 SER B 106 REMARK 465 SER B 107 REMARK 465 ASN B 108 REMARK 465 SER B 109 REMARK 465 ARG B 110 REMARK 465 SER B 111 REMARK 465 GLN B 112 REMARK 465 ALA B 113 REMARK 465 TYR B 114 REMARK 465 LYS B 115 REMARK 465 VAL B 116 REMARK 465 THR B 117 REMARK 465 CYS B 118 REMARK 465 SER B 119 REMARK 465 VAL B 120 REMARK 465 ARG B 121 REMARK 465 GLN B 122 REMARK 465 SER B 123 REMARK 465 SER B 124 REMARK 465 ALA B 125 REMARK 465 GLN B 126 REMARK 465 ASN B 127 REMARK 465 ARG B 128 REMARK 465 LYS B 129 REMARK 465 TYR B 130 REMARK 465 THR B 131 REMARK 465 ILE B 132 REMARK 465 LYS B 133 REMARK 465 VAL B 134 REMARK 465 GLU B 135 REMARK 465 VAL B 136 REMARK 465 PRO B 137 REMARK 465 LYS B 138 REMARK 465 VAL B 139 REMARK 465 ALA B 140 REMARK 465 THR B 141 REMARK 465 GLN B 142 REMARK 465 THR B 143 REMARK 465 VAL B 144 REMARK 465 GLY B 145 REMARK 465 GLY B 146 REMARK 465 VAL B 147 REMARK 465 GLU B 148 REMARK 465 LEU B 149 REMARK 465 PRO B 150 REMARK 465 VAL B 151 REMARK 465 ALA B 152 REMARK 465 ALA B 153 REMARK 465 TRP B 154 REMARK 465 ARG B 155 REMARK 465 SER B 156 REMARK 465 TYR B 157 REMARK 465 LEU B 158 REMARK 465 ASN B 159 REMARK 465 MET B 160 REMARK 465 GLU B 161 REMARK 465 LEU B 162 REMARK 465 THR B 163 REMARK 465 ILE B 164 REMARK 465 PRO B 165 REMARK 465 ILE B 166 REMARK 465 PHE B 167 REMARK 465 ALA B 168 REMARK 465 THR B 169 REMARK 465 ASN B 170 REMARK 465 SER B 171 REMARK 465 ASP B 172 REMARK 465 CYS B 173 REMARK 465 GLU B 174 REMARK 465 LEU B 175 REMARK 465 ILE B 176 REMARK 465 VAL B 177 REMARK 465 LYS B 178 REMARK 465 ALA B 179 REMARK 465 MET B 180 REMARK 465 GLN B 181 REMARK 465 GLY B 182 REMARK 465 LEU B 183 REMARK 465 LEU B 184 REMARK 465 LYS B 185 REMARK 465 ASP B 186 REMARK 465 GLY B 187 REMARK 465 ASN B 188 REMARK 465 PRO B 189 REMARK 465 ILE B 190 REMARK 465 PRO B 191 REMARK 465 SER B 192 REMARK 465 ALA B 193 REMARK 465 ILE B 194 REMARK 465 ALA B 195 REMARK 465 ALA B 196 REMARK 465 ASN B 197 REMARK 465 SER B 198 REMARK 465 GLY B 199 REMARK 465 ILE B 200 REMARK 465 TYR B 201 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 198 -169.59 -125.25 REMARK 500 ALA A 202 -29.59 -141.28 REMARK 500 PHE A 226 20.39 -140.22 REMARK 500 SER B 203 -6.92 67.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-70484 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE ASSEMBLED MS2 CPM58 VLP DBREF 9OH5 A 1 72 UNP P03612 CAPSD_BPMS2 59 130 DBREF 9OH5 A 73 201 UNP P03612 CAPSD_BPMS2 2 130 DBREF 9OH5 A 202 258 UNP P03612 CAPSD_BPMS2 2 58 DBREF 9OH5 B 1 72 UNP P03612 CAPSD_BPMS2 59 130 DBREF 9OH5 B 73 201 UNP P03612 CAPSD_BPMS2 2 130 DBREF 9OH5 B 202 258 UNP P03612 CAPSD_BPMS2 2 58 SEQRES 1 A 258 TYR THR ILE LYS VAL GLU VAL PRO LYS VAL ALA THR GLN SEQRES 2 A 258 THR VAL GLY GLY VAL GLU LEU PRO VAL ALA ALA TRP ARG SEQRES 3 A 258 SER TYR LEU ASN MET GLU LEU THR ILE PRO ILE PHE ALA SEQRES 4 A 258 THR ASN SER ASP CYS GLU LEU ILE VAL LYS ALA MET GLN SEQRES 5 A 258 GLY LEU LEU LYS ASP GLY ASN PRO ILE PRO SER ALA ILE SEQRES 6 A 258 ALA ALA ASN SER GLY ILE TYR ALA SER ASN PHE THR GLN SEQRES 7 A 258 PHE VAL LEU VAL ASP ASN GLY GLY THR GLY ASP VAL THR SEQRES 8 A 258 VAL ALA PRO SER ASN PHE ALA ASN GLY VAL ALA GLU TRP SEQRES 9 A 258 ILE SER SER ASN SER ARG SER GLN ALA TYR LYS VAL THR SEQRES 10 A 258 CYS SER VAL ARG GLN SER SER ALA GLN ASN ARG LYS TYR SEQRES 11 A 258 THR ILE LYS VAL GLU VAL PRO LYS VAL ALA THR GLN THR SEQRES 12 A 258 VAL GLY GLY VAL GLU LEU PRO VAL ALA ALA TRP ARG SER SEQRES 13 A 258 TYR LEU ASN MET GLU LEU THR ILE PRO ILE PHE ALA THR SEQRES 14 A 258 ASN SER ASP CYS GLU LEU ILE VAL LYS ALA MET GLN GLY SEQRES 15 A 258 LEU LEU LYS ASP GLY ASN PRO ILE PRO SER ALA ILE ALA SEQRES 16 A 258 ALA ASN SER GLY ILE TYR ALA SER ASN PHE THR GLN PHE SEQRES 17 A 258 VAL LEU VAL ASP ASN GLY GLY THR GLY ASP VAL THR VAL SEQRES 18 A 258 ALA PRO SER ASN PHE ALA ASN GLY VAL ALA GLU TRP ILE SEQRES 19 A 258 SER SER ASN SER ARG SER GLN ALA TYR LYS VAL THR CYS SEQRES 20 A 258 SER VAL ARG GLN SER SER ALA GLN ASN ARG LYS SEQRES 1 B 258 TYR THR ILE LYS VAL GLU VAL PRO LYS VAL ALA THR GLN SEQRES 2 B 258 THR VAL GLY GLY VAL GLU LEU PRO VAL ALA ALA TRP ARG SEQRES 3 B 258 SER TYR LEU ASN MET GLU LEU THR ILE PRO ILE PHE ALA SEQRES 4 B 258 THR ASN SER ASP CYS GLU LEU ILE VAL LYS ALA MET GLN SEQRES 5 B 258 GLY LEU LEU LYS ASP GLY ASN PRO ILE PRO SER ALA ILE SEQRES 6 B 258 ALA ALA ASN SER GLY ILE TYR ALA SER ASN PHE THR GLN SEQRES 7 B 258 PHE VAL LEU VAL ASP ASN GLY GLY THR GLY ASP VAL THR SEQRES 8 B 258 VAL ALA PRO SER ASN PHE ALA ASN GLY VAL ALA GLU TRP SEQRES 9 B 258 ILE SER SER ASN SER ARG SER GLN ALA TYR LYS VAL THR SEQRES 10 B 258 CYS SER VAL ARG GLN SER SER ALA GLN ASN ARG LYS TYR SEQRES 11 B 258 THR ILE LYS VAL GLU VAL PRO LYS VAL ALA THR GLN THR SEQRES 12 B 258 VAL GLY GLY VAL GLU LEU PRO VAL ALA ALA TRP ARG SER SEQRES 13 B 258 TYR LEU ASN MET GLU LEU THR ILE PRO ILE PHE ALA THR SEQRES 14 B 258 ASN SER ASP CYS GLU LEU ILE VAL LYS ALA MET GLN GLY SEQRES 15 B 258 LEU LEU LYS ASP GLY ASN PRO ILE PRO SER ALA ILE ALA SEQRES 16 B 258 ALA ASN SER GLY ILE TYR ALA SER ASN PHE THR GLN PHE SEQRES 17 B 258 VAL LEU VAL ASP ASN GLY GLY THR GLY ASP VAL THR VAL SEQRES 18 B 258 ALA PRO SER ASN PHE ALA ASN GLY VAL ALA GLU TRP ILE SEQRES 19 B 258 SER SER ASN SER ARG SER GLN ALA TYR LYS VAL THR CYS SEQRES 20 B 258 SER VAL ARG GLN SER SER ALA GLN ASN ARG LYS HELIX 1 AA1 PRO A 21 ALA A 24 5 4 HELIX 2 AA2 THR A 40 LEU A 55 1 16 HELIX 3 AA3 ASN A 59 ALA A 67 1 9 HELIX 4 AA4 PHE A 97 VAL A 101 5 5 HELIX 5 AA5 THR A 169 LEU A 184 1 16 HELIX 6 AA6 ASN A 188 ALA A 196 1 9 HELIX 7 AA7 PHE A 226 VAL A 230 5 5 HELIX 8 AA8 THR B 40 LEU B 55 1 16 HELIX 9 AA9 ASN B 59 ALA B 67 1 9 HELIX 10 AB1 PHE B 226 VAL B 230 5 5 HELIX 11 AB2 SER B 238 ALA B 242 5 5 SHEET 1 AA112 PHE A 79 VAL A 82 0 SHEET 2 AA112 VAL A 90 ASN A 96 -1 O VAL A 90 N VAL A 82 SHEET 3 AA112 ALA A 102 SER A 106 -1 O ILE A 105 N ALA A 93 SHEET 4 AA112 LYS A 115 ARG A 121 -1 O CYS A 118 N ALA A 102 SHEET 5 AA112 ASN A 127 VAL A 144 -1 O LYS A 129 N ARG A 121 SHEET 6 AA112 VAL A 147 PRO A 165 -1 O SER A 156 N VAL A 136 SHEET 7 AA112 ARG A 26 PRO A 36 -1 N THR A 34 O TYR A 157 SHEET 8 AA112 THR A 2 PRO A 8 -1 N ILE A 3 O MET A 31 SHEET 9 AA112 LYS A 244 SER A 248 -1 O SER A 248 N THR A 2 SHEET 10 AA112 ALA A 231 ILE A 234 -1 N TRP A 233 O VAL A 245 SHEET 11 AA112 VAL A 219 ASN A 225 -1 N ALA A 222 O ILE A 234 SHEET 12 AA112 PHE A 208 VAL A 211 -1 N PHE A 208 O VAL A 221 SHEET 1 AA2 8 PHE A 79 VAL A 82 0 SHEET 2 AA2 8 VAL A 90 ASN A 96 -1 O VAL A 90 N VAL A 82 SHEET 3 AA2 8 ALA A 102 SER A 106 -1 O ILE A 105 N ALA A 93 SHEET 4 AA2 8 LYS A 115 ARG A 121 -1 O CYS A 118 N ALA A 102 SHEET 5 AA2 8 ASN A 127 VAL A 144 -1 O LYS A 129 N ARG A 121 SHEET 6 AA2 8 VAL A 147 PRO A 165 -1 O SER A 156 N VAL A 136 SHEET 7 AA2 8 ARG A 26 PRO A 36 -1 N THR A 34 O TYR A 157 SHEET 8 AA2 8 ASN A 256 ARG A 257 -1 O ARG A 257 N ILE A 35 SHEET 1 AA3 6 VAL B 18 GLU B 32 0 SHEET 2 AA3 6 THR B 2 VAL B 15 -1 N VAL B 15 O VAL B 18 SHEET 3 AA3 6 LYS B 244 SER B 248 -1 O THR B 246 N LYS B 4 SHEET 4 AA3 6 ALA B 231 SER B 235 -1 N TRP B 233 O VAL B 245 SHEET 5 AA3 6 VAL B 219 ASN B 225 -1 N ALA B 222 O ILE B 234 SHEET 6 AA3 6 PHE B 208 VAL B 211 -1 N LEU B 210 O VAL B 219 SHEET 1 AA4 2 ILE B 35 PRO B 36 0 SHEET 2 AA4 2 ASN B 256 ARG B 257 -1 O ARG B 257 N ILE B 35 CISPEP 1 LEU A 20 PRO A 21 0 -1.94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 1930 LYS A 258 TER 2896 LYS B 258 MASTER 434 0 0 11 28 0 0 6 2894 2 0 40 END