data_9OI9 # _entry.id 9OI9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.414 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9OI9 pdb_00009oi9 10.2210/pdb9oi9/pdb WWPDB D_1000295063 ? ? EMDB EMD-70514 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-05-27 ? 2 'EM metadata' 1 0 2026-05-27 ? 3 'Additional map' 1 0 2026-05-27 1 4 FSC 1 0 2026-05-27 ? 5 'Half map' 1 0 2026-05-27 1 6 'Half map' 1 0 2026-05-27 2 7 Image 1 0 2026-05-27 ? 8 'Primary map' 1 0 2026-05-27 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 FSC repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 'Half map' repository 'Initial release' ? ? 7 7 Image repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9OI9 _pdbx_database_status.recvd_initial_deposition_date 2025-05-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Structure of ADan amyloid filaments extracted from human brain of Familial Danish Dementia patient' _pdbx_database_related.db_id EMD-70514 _pdbx_database_related.content_type 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 rvidal@iu.edu Ruben Vidal ? 'principal investigator/group leader' 0000-0002-5803-3871 4 wen.jiang@psu.edu Wen Jiang ? 'principal investigator/group leader' 0000-0002-1292-2411 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ozcan, K.A.' 1 ? 'Vago, F.' 2 ? 'Jiang, W.' 3 ? 'Vidal, R.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Cryo-EM structures of ADan and ABri filaments from FDD and FBD' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ozcan, K.A.' 1 ? primary 'Vago, F.' 2 ? primary 'Jiang, W.' 3 ? primary 'Vidal, R.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'ADan (ITM2B mutant)' _entity.formula_weight 2980.483 _entity.pdbx_number_of_molecules 15 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SNCFAIRHFENKFAVETLICFNLFL _entity_poly.pdbx_seq_one_letter_code_can SNCFAIRHFENKFAVETLICFNLFL _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 CYS n 1 4 PHE n 1 5 ALA n 1 6 ILE n 1 7 ARG n 1 8 HIS n 1 9 PHE n 1 10 GLU n 1 11 ASN n 1 12 LYS n 1 13 PHE n 1 14 ALA n 1 15 VAL n 1 16 GLU n 1 17 THR n 1 18 LEU n 1 19 ILE n 1 20 CYS n 1 21 PHE n 1 22 ASN n 1 23 LEU n 1 24 PHE n 1 25 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 25 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ Brain _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 3 3 SER SER A . n A 1 2 ASN 2 4 4 ASN ASN A . n A 1 3 CYS 3 5 5 CYS CYS A . n A 1 4 PHE 4 6 6 PHE PHE A . n A 1 5 ALA 5 7 7 ALA ALA A . n A 1 6 ILE 6 8 8 ILE ILE A . n A 1 7 ARG 7 9 9 ARG ARG A . n A 1 8 HIS 8 10 10 HIS HIS A . n A 1 9 PHE 9 11 11 PHE PHE A . n A 1 10 GLU 10 12 12 GLU GLU A . n A 1 11 ASN 11 13 13 ASN ASN A . n A 1 12 LYS 12 14 14 LYS LYS A . n A 1 13 PHE 13 15 15 PHE PHE A . n A 1 14 ALA 14 16 16 ALA ALA A . n A 1 15 VAL 15 17 17 VAL VAL A . n A 1 16 GLU 16 18 18 GLU GLU A . n A 1 17 THR 17 19 19 THR THR A . n A 1 18 LEU 18 20 20 LEU LEU A . n A 1 19 ILE 19 21 21 ILE ILE A . n A 1 20 CYS 20 22 22 CYS CYS A . n A 1 21 PHE 21 23 23 PHE PHE A . n A 1 22 ASN 22 24 24 ASN ASN A . n A 1 23 LEU 23 25 25 LEU LEU A . n A 1 24 PHE 24 26 26 PHE PHE A . n A 1 25 LEU 25 27 27 LEU LEU A . n B 1 1 SER 1 3 3 SER SER B . n B 1 2 ASN 2 4 4 ASN ASN B . n B 1 3 CYS 3 5 5 CYS CYS B . n B 1 4 PHE 4 6 6 PHE PHE B . n B 1 5 ALA 5 7 7 ALA ALA B . n B 1 6 ILE 6 8 8 ILE ILE B . n B 1 7 ARG 7 9 9 ARG ARG B . n B 1 8 HIS 8 10 10 HIS HIS B . n B 1 9 PHE 9 11 11 PHE PHE B . n B 1 10 GLU 10 12 12 GLU GLU B . n B 1 11 ASN 11 13 13 ASN ASN B . n B 1 12 LYS 12 14 14 LYS LYS B . n B 1 13 PHE 13 15 15 PHE PHE B . n B 1 14 ALA 14 16 16 ALA ALA B . n B 1 15 VAL 15 17 17 VAL VAL B . n B 1 16 GLU 16 18 18 GLU GLU B . n B 1 17 THR 17 19 19 THR THR B . n B 1 18 LEU 18 20 20 LEU LEU B . n B 1 19 ILE 19 21 21 ILE ILE B . n B 1 20 CYS 20 22 22 CYS CYS B . n B 1 21 PHE 21 23 23 PHE PHE B . n B 1 22 ASN 22 24 24 ASN ASN B . n B 1 23 LEU 23 25 25 LEU LEU B . n B 1 24 PHE 24 26 26 PHE PHE B . n B 1 25 LEU 25 27 27 LEU LEU B . n C 1 1 SER 1 3 3 SER SER C . n C 1 2 ASN 2 4 4 ASN ASN C . n C 1 3 CYS 3 5 5 CYS CYS C . n C 1 4 PHE 4 6 6 PHE PHE C . n C 1 5 ALA 5 7 7 ALA ALA C . n C 1 6 ILE 6 8 8 ILE ILE C . n C 1 7 ARG 7 9 9 ARG ARG C . n C 1 8 HIS 8 10 10 HIS HIS C . n C 1 9 PHE 9 11 11 PHE PHE C . n C 1 10 GLU 10 12 12 GLU GLU C . n C 1 11 ASN 11 13 13 ASN ASN C . n C 1 12 LYS 12 14 14 LYS LYS C . n C 1 13 PHE 13 15 15 PHE PHE C . n C 1 14 ALA 14 16 16 ALA ALA C . n C 1 15 VAL 15 17 17 VAL VAL C . n C 1 16 GLU 16 18 18 GLU GLU C . n C 1 17 THR 17 19 19 THR THR C . n C 1 18 LEU 18 20 20 LEU LEU C . n C 1 19 ILE 19 21 21 ILE ILE C . n C 1 20 CYS 20 22 22 CYS CYS C . n C 1 21 PHE 21 23 23 PHE PHE C . n C 1 22 ASN 22 24 24 ASN ASN C . n C 1 23 LEU 23 25 25 LEU LEU C . n C 1 24 PHE 24 26 26 PHE PHE C . n C 1 25 LEU 25 27 27 LEU LEU C . n D 1 1 SER 1 3 3 SER SER D . n D 1 2 ASN 2 4 4 ASN ASN D . n D 1 3 CYS 3 5 5 CYS CYS D . n D 1 4 PHE 4 6 6 PHE PHE D . n D 1 5 ALA 5 7 7 ALA ALA D . n D 1 6 ILE 6 8 8 ILE ILE D . n D 1 7 ARG 7 9 9 ARG ARG D . n D 1 8 HIS 8 10 10 HIS HIS D . n D 1 9 PHE 9 11 11 PHE PHE D . n D 1 10 GLU 10 12 12 GLU GLU D . n D 1 11 ASN 11 13 13 ASN ASN D . n D 1 12 LYS 12 14 14 LYS LYS D . n D 1 13 PHE 13 15 15 PHE PHE D . n D 1 14 ALA 14 16 16 ALA ALA D . n D 1 15 VAL 15 17 17 VAL VAL D . n D 1 16 GLU 16 18 18 GLU GLU D . n D 1 17 THR 17 19 19 THR THR D . n D 1 18 LEU 18 20 20 LEU LEU D . n D 1 19 ILE 19 21 21 ILE ILE D . n D 1 20 CYS 20 22 22 CYS CYS D . n D 1 21 PHE 21 23 23 PHE PHE D . n D 1 22 ASN 22 24 24 ASN ASN D . n D 1 23 LEU 23 25 25 LEU LEU D . n D 1 24 PHE 24 26 26 PHE PHE D . n D 1 25 LEU 25 27 27 LEU LEU D . n E 1 1 SER 1 3 3 SER SER E . n E 1 2 ASN 2 4 4 ASN ASN E . n E 1 3 CYS 3 5 5 CYS CYS E . n E 1 4 PHE 4 6 6 PHE PHE E . n E 1 5 ALA 5 7 7 ALA ALA E . n E 1 6 ILE 6 8 8 ILE ILE E . n E 1 7 ARG 7 9 9 ARG ARG E . n E 1 8 HIS 8 10 10 HIS HIS E . n E 1 9 PHE 9 11 11 PHE PHE E . n E 1 10 GLU 10 12 12 GLU GLU E . n E 1 11 ASN 11 13 13 ASN ASN E . n E 1 12 LYS 12 14 14 LYS LYS E . n E 1 13 PHE 13 15 15 PHE PHE E . n E 1 14 ALA 14 16 16 ALA ALA E . n E 1 15 VAL 15 17 17 VAL VAL E . n E 1 16 GLU 16 18 18 GLU GLU E . n E 1 17 THR 17 19 19 THR THR E . n E 1 18 LEU 18 20 20 LEU LEU E . n E 1 19 ILE 19 21 21 ILE ILE E . n E 1 20 CYS 20 22 22 CYS CYS E . n E 1 21 PHE 21 23 23 PHE PHE E . n E 1 22 ASN 22 24 24 ASN ASN E . n E 1 23 LEU 23 25 25 LEU LEU E . n E 1 24 PHE 24 26 26 PHE PHE E . n E 1 25 LEU 25 27 27 LEU LEU E . n F 1 1 SER 1 3 3 SER SER F . n F 1 2 ASN 2 4 4 ASN ASN F . n F 1 3 CYS 3 5 5 CYS CYS F . n F 1 4 PHE 4 6 6 PHE PHE F . n F 1 5 ALA 5 7 7 ALA ALA F . n F 1 6 ILE 6 8 8 ILE ILE F . n F 1 7 ARG 7 9 9 ARG ARG F . n F 1 8 HIS 8 10 10 HIS HIS F . n F 1 9 PHE 9 11 11 PHE PHE F . n F 1 10 GLU 10 12 12 GLU GLU F . n F 1 11 ASN 11 13 13 ASN ASN F . n F 1 12 LYS 12 14 14 LYS LYS F . n F 1 13 PHE 13 15 15 PHE PHE F . n F 1 14 ALA 14 16 16 ALA ALA F . n F 1 15 VAL 15 17 17 VAL VAL F . n F 1 16 GLU 16 18 18 GLU GLU F . n F 1 17 THR 17 19 19 THR THR F . n F 1 18 LEU 18 20 20 LEU LEU F . n F 1 19 ILE 19 21 21 ILE ILE F . n F 1 20 CYS 20 22 22 CYS CYS F . n F 1 21 PHE 21 23 23 PHE PHE F . n F 1 22 ASN 22 24 24 ASN ASN F . n F 1 23 LEU 23 25 25 LEU LEU F . n F 1 24 PHE 24 26 26 PHE PHE F . n F 1 25 LEU 25 27 27 LEU LEU F . n G 1 1 SER 1 3 3 SER SER G . n G 1 2 ASN 2 4 4 ASN ASN G . n G 1 3 CYS 3 5 5 CYS CYS G . n G 1 4 PHE 4 6 6 PHE PHE G . n G 1 5 ALA 5 7 7 ALA ALA G . n G 1 6 ILE 6 8 8 ILE ILE G . n G 1 7 ARG 7 9 9 ARG ARG G . n G 1 8 HIS 8 10 10 HIS HIS G . n G 1 9 PHE 9 11 11 PHE PHE G . n G 1 10 GLU 10 12 12 GLU GLU G . n G 1 11 ASN 11 13 13 ASN ASN G . n G 1 12 LYS 12 14 14 LYS LYS G . n G 1 13 PHE 13 15 15 PHE PHE G . n G 1 14 ALA 14 16 16 ALA ALA G . n G 1 15 VAL 15 17 17 VAL VAL G . n G 1 16 GLU 16 18 18 GLU GLU G . n G 1 17 THR 17 19 19 THR THR G . n G 1 18 LEU 18 20 20 LEU LEU G . n G 1 19 ILE 19 21 21 ILE ILE G . n G 1 20 CYS 20 22 22 CYS CYS G . n G 1 21 PHE 21 23 23 PHE PHE G . n G 1 22 ASN 22 24 24 ASN ASN G . n G 1 23 LEU 23 25 25 LEU LEU G . n G 1 24 PHE 24 26 26 PHE PHE G . n G 1 25 LEU 25 27 27 LEU LEU G . n H 1 1 SER 1 3 3 SER SER H . n H 1 2 ASN 2 4 4 ASN ASN H . n H 1 3 CYS 3 5 5 CYS CYS H . n H 1 4 PHE 4 6 6 PHE PHE H . n H 1 5 ALA 5 7 7 ALA ALA H . n H 1 6 ILE 6 8 8 ILE ILE H . n H 1 7 ARG 7 9 9 ARG ARG H . n H 1 8 HIS 8 10 10 HIS HIS H . n H 1 9 PHE 9 11 11 PHE PHE H . n H 1 10 GLU 10 12 12 GLU GLU H . n H 1 11 ASN 11 13 13 ASN ASN H . n H 1 12 LYS 12 14 14 LYS LYS H . n H 1 13 PHE 13 15 15 PHE PHE H . n H 1 14 ALA 14 16 16 ALA ALA H . n H 1 15 VAL 15 17 17 VAL VAL H . n H 1 16 GLU 16 18 18 GLU GLU H . n H 1 17 THR 17 19 19 THR THR H . n H 1 18 LEU 18 20 20 LEU LEU H . n H 1 19 ILE 19 21 21 ILE ILE H . n H 1 20 CYS 20 22 22 CYS CYS H . n H 1 21 PHE 21 23 23 PHE PHE H . n H 1 22 ASN 22 24 24 ASN ASN H . n H 1 23 LEU 23 25 25 LEU LEU H . n H 1 24 PHE 24 26 26 PHE PHE H . n H 1 25 LEU 25 27 27 LEU LEU H . n I 1 1 SER 1 3 3 SER SER I . n I 1 2 ASN 2 4 4 ASN ASN I . n I 1 3 CYS 3 5 5 CYS CYS I . n I 1 4 PHE 4 6 6 PHE PHE I . n I 1 5 ALA 5 7 7 ALA ALA I . n I 1 6 ILE 6 8 8 ILE ILE I . n I 1 7 ARG 7 9 9 ARG ARG I . n I 1 8 HIS 8 10 10 HIS HIS I . n I 1 9 PHE 9 11 11 PHE PHE I . n I 1 10 GLU 10 12 12 GLU GLU I . n I 1 11 ASN 11 13 13 ASN ASN I . n I 1 12 LYS 12 14 14 LYS LYS I . n I 1 13 PHE 13 15 15 PHE PHE I . n I 1 14 ALA 14 16 16 ALA ALA I . n I 1 15 VAL 15 17 17 VAL VAL I . n I 1 16 GLU 16 18 18 GLU GLU I . n I 1 17 THR 17 19 19 THR THR I . n I 1 18 LEU 18 20 20 LEU LEU I . n I 1 19 ILE 19 21 21 ILE ILE I . n I 1 20 CYS 20 22 22 CYS CYS I . n I 1 21 PHE 21 23 23 PHE PHE I . n I 1 22 ASN 22 24 24 ASN ASN I . n I 1 23 LEU 23 25 25 LEU LEU I . n I 1 24 PHE 24 26 26 PHE PHE I . n I 1 25 LEU 25 27 27 LEU LEU I . n J 1 1 SER 1 3 3 SER SER J . n J 1 2 ASN 2 4 4 ASN ASN J . n J 1 3 CYS 3 5 5 CYS CYS J . n J 1 4 PHE 4 6 6 PHE PHE J . n J 1 5 ALA 5 7 7 ALA ALA J . n J 1 6 ILE 6 8 8 ILE ILE J . n J 1 7 ARG 7 9 9 ARG ARG J . n J 1 8 HIS 8 10 10 HIS HIS J . n J 1 9 PHE 9 11 11 PHE PHE J . n J 1 10 GLU 10 12 12 GLU GLU J . n J 1 11 ASN 11 13 13 ASN ASN J . n J 1 12 LYS 12 14 14 LYS LYS J . n J 1 13 PHE 13 15 15 PHE PHE J . n J 1 14 ALA 14 16 16 ALA ALA J . n J 1 15 VAL 15 17 17 VAL VAL J . n J 1 16 GLU 16 18 18 GLU GLU J . n J 1 17 THR 17 19 19 THR THR J . n J 1 18 LEU 18 20 20 LEU LEU J . n J 1 19 ILE 19 21 21 ILE ILE J . n J 1 20 CYS 20 22 22 CYS CYS J . n J 1 21 PHE 21 23 23 PHE PHE J . n J 1 22 ASN 22 24 24 ASN ASN J . n J 1 23 LEU 23 25 25 LEU LEU J . n J 1 24 PHE 24 26 26 PHE PHE J . n J 1 25 LEU 25 27 27 LEU LEU J . n K 1 1 SER 1 3 3 SER SER K . n K 1 2 ASN 2 4 4 ASN ASN K . n K 1 3 CYS 3 5 5 CYS CYS K . n K 1 4 PHE 4 6 6 PHE PHE K . n K 1 5 ALA 5 7 7 ALA ALA K . n K 1 6 ILE 6 8 8 ILE ILE K . n K 1 7 ARG 7 9 9 ARG ARG K . n K 1 8 HIS 8 10 10 HIS HIS K . n K 1 9 PHE 9 11 11 PHE PHE K . n K 1 10 GLU 10 12 12 GLU GLU K . n K 1 11 ASN 11 13 13 ASN ASN K . n K 1 12 LYS 12 14 14 LYS LYS K . n K 1 13 PHE 13 15 15 PHE PHE K . n K 1 14 ALA 14 16 16 ALA ALA K . n K 1 15 VAL 15 17 17 VAL VAL K . n K 1 16 GLU 16 18 18 GLU GLU K . n K 1 17 THR 17 19 19 THR THR K . n K 1 18 LEU 18 20 20 LEU LEU K . n K 1 19 ILE 19 21 21 ILE ILE K . n K 1 20 CYS 20 22 22 CYS CYS K . n K 1 21 PHE 21 23 23 PHE PHE K . n K 1 22 ASN 22 24 24 ASN ASN K . n K 1 23 LEU 23 25 25 LEU LEU K . n K 1 24 PHE 24 26 26 PHE PHE K . n K 1 25 LEU 25 27 27 LEU LEU K . n L 1 1 SER 1 3 3 SER SER L . n L 1 2 ASN 2 4 4 ASN ASN L . n L 1 3 CYS 3 5 5 CYS CYS L . n L 1 4 PHE 4 6 6 PHE PHE L . n L 1 5 ALA 5 7 7 ALA ALA L . n L 1 6 ILE 6 8 8 ILE ILE L . n L 1 7 ARG 7 9 9 ARG ARG L . n L 1 8 HIS 8 10 10 HIS HIS L . n L 1 9 PHE 9 11 11 PHE PHE L . n L 1 10 GLU 10 12 12 GLU GLU L . n L 1 11 ASN 11 13 13 ASN ASN L . n L 1 12 LYS 12 14 14 LYS LYS L . n L 1 13 PHE 13 15 15 PHE PHE L . n L 1 14 ALA 14 16 16 ALA ALA L . n L 1 15 VAL 15 17 17 VAL VAL L . n L 1 16 GLU 16 18 18 GLU GLU L . n L 1 17 THR 17 19 19 THR THR L . n L 1 18 LEU 18 20 20 LEU LEU L . n L 1 19 ILE 19 21 21 ILE ILE L . n L 1 20 CYS 20 22 22 CYS CYS L . n L 1 21 PHE 21 23 23 PHE PHE L . n L 1 22 ASN 22 24 24 ASN ASN L . n L 1 23 LEU 23 25 25 LEU LEU L . n L 1 24 PHE 24 26 26 PHE PHE L . n L 1 25 LEU 25 27 27 LEU LEU L . n M 1 1 SER 1 3 3 SER SER M . n M 1 2 ASN 2 4 4 ASN ASN M . n M 1 3 CYS 3 5 5 CYS CYS M . n M 1 4 PHE 4 6 6 PHE PHE M . n M 1 5 ALA 5 7 7 ALA ALA M . n M 1 6 ILE 6 8 8 ILE ILE M . n M 1 7 ARG 7 9 9 ARG ARG M . n M 1 8 HIS 8 10 10 HIS HIS M . n M 1 9 PHE 9 11 11 PHE PHE M . n M 1 10 GLU 10 12 12 GLU GLU M . n M 1 11 ASN 11 13 13 ASN ASN M . n M 1 12 LYS 12 14 14 LYS LYS M . n M 1 13 PHE 13 15 15 PHE PHE M . n M 1 14 ALA 14 16 16 ALA ALA M . n M 1 15 VAL 15 17 17 VAL VAL M . n M 1 16 GLU 16 18 18 GLU GLU M . n M 1 17 THR 17 19 19 THR THR M . n M 1 18 LEU 18 20 20 LEU LEU M . n M 1 19 ILE 19 21 21 ILE ILE M . n M 1 20 CYS 20 22 22 CYS CYS M . n M 1 21 PHE 21 23 23 PHE PHE M . n M 1 22 ASN 22 24 24 ASN ASN M . n M 1 23 LEU 23 25 25 LEU LEU M . n M 1 24 PHE 24 26 26 PHE PHE M . n M 1 25 LEU 25 27 27 LEU LEU M . n N 1 1 SER 1 3 3 SER SER N . n N 1 2 ASN 2 4 4 ASN ASN N . n N 1 3 CYS 3 5 5 CYS CYS N . n N 1 4 PHE 4 6 6 PHE PHE N . n N 1 5 ALA 5 7 7 ALA ALA N . n N 1 6 ILE 6 8 8 ILE ILE N . n N 1 7 ARG 7 9 9 ARG ARG N . n N 1 8 HIS 8 10 10 HIS HIS N . n N 1 9 PHE 9 11 11 PHE PHE N . n N 1 10 GLU 10 12 12 GLU GLU N . n N 1 11 ASN 11 13 13 ASN ASN N . n N 1 12 LYS 12 14 14 LYS LYS N . n N 1 13 PHE 13 15 15 PHE PHE N . n N 1 14 ALA 14 16 16 ALA ALA N . n N 1 15 VAL 15 17 17 VAL VAL N . n N 1 16 GLU 16 18 18 GLU GLU N . n N 1 17 THR 17 19 19 THR THR N . n N 1 18 LEU 18 20 20 LEU LEU N . n N 1 19 ILE 19 21 21 ILE ILE N . n N 1 20 CYS 20 22 22 CYS CYS N . n N 1 21 PHE 21 23 23 PHE PHE N . n N 1 22 ASN 22 24 24 ASN ASN N . n N 1 23 LEU 23 25 25 LEU LEU N . n N 1 24 PHE 24 26 26 PHE PHE N . n N 1 25 LEU 25 27 27 LEU LEU N . n O 1 1 SER 1 3 3 SER SER O . n O 1 2 ASN 2 4 4 ASN ASN O . n O 1 3 CYS 3 5 5 CYS CYS O . n O 1 4 PHE 4 6 6 PHE PHE O . n O 1 5 ALA 5 7 7 ALA ALA O . n O 1 6 ILE 6 8 8 ILE ILE O . n O 1 7 ARG 7 9 9 ARG ARG O . n O 1 8 HIS 8 10 10 HIS HIS O . n O 1 9 PHE 9 11 11 PHE PHE O . n O 1 10 GLU 10 12 12 GLU GLU O . n O 1 11 ASN 11 13 13 ASN ASN O . n O 1 12 LYS 12 14 14 LYS LYS O . n O 1 13 PHE 13 15 15 PHE PHE O . n O 1 14 ALA 14 16 16 ALA ALA O . n O 1 15 VAL 15 17 17 VAL VAL O . n O 1 16 GLU 16 18 18 GLU GLU O . n O 1 17 THR 17 19 19 THR THR O . n O 1 18 LEU 18 20 20 LEU LEU O . n O 1 19 ILE 19 21 21 ILE ILE O . n O 1 20 CYS 20 22 22 CYS CYS O . n O 1 21 PHE 21 23 23 PHE PHE O . n O 1 22 ASN 22 24 24 ASN ASN O . n O 1 23 LEU 23 25 25 LEU LEU O . n O 1 24 PHE 24 26 26 PHE PHE O . n O 1 25 LEU 25 27 27 LEU LEU O . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9OI9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9OI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9OI9 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9OI9 _struct.title 'Structure of ADan amyloid filaments extracted from human brain of Familial Danish Dementia patient' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9OI9 _struct_keywords.text 'amyloid, filament, neurodegeneration, brain, ex vivo, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9OI9 _struct_ref.pdbx_db_accession 9OI9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9OI9 A 1 ? 25 ? 9OI9 3 ? 27 ? 3 27 2 1 9OI9 B 1 ? 25 ? 9OI9 3 ? 27 ? 3 27 3 1 9OI9 C 1 ? 25 ? 9OI9 3 ? 27 ? 3 27 4 1 9OI9 D 1 ? 25 ? 9OI9 3 ? 27 ? 3 27 5 1 9OI9 E 1 ? 25 ? 9OI9 3 ? 27 ? 3 27 6 1 9OI9 F 1 ? 25 ? 9OI9 3 ? 27 ? 3 27 7 1 9OI9 G 1 ? 25 ? 9OI9 3 ? 27 ? 3 27 8 1 9OI9 H 1 ? 25 ? 9OI9 3 ? 27 ? 3 27 9 1 9OI9 I 1 ? 25 ? 9OI9 3 ? 27 ? 3 27 10 1 9OI9 J 1 ? 25 ? 9OI9 3 ? 27 ? 3 27 11 1 9OI9 K 1 ? 25 ? 9OI9 3 ? 27 ? 3 27 12 1 9OI9 L 1 ? 25 ? 9OI9 3 ? 27 ? 3 27 13 1 9OI9 M 1 ? 25 ? 9OI9 3 ? 27 ? 3 27 14 1 9OI9 N 1 ? 25 ? 9OI9 3 ? 27 ? 3 27 15 1 9OI9 O 1 ? 25 ? 9OI9 3 ? 27 ? 3 27 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 15-meric _pdbx_struct_assembly.oligomeric_count 15 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 20 SG ? ? A CYS 5 A CYS 22 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf2 disulf ? ? B CYS 3 SG ? ? ? 1_555 B CYS 20 SG ? ? B CYS 5 B CYS 22 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf3 disulf ? ? C CYS 3 SG ? ? ? 1_555 C CYS 20 SG ? ? C CYS 5 C CYS 22 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf4 disulf ? ? D CYS 3 SG ? ? ? 1_555 D CYS 20 SG ? ? D CYS 5 D CYS 22 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf5 disulf ? ? E CYS 3 SG ? ? ? 1_555 E CYS 20 SG ? ? E CYS 5 E CYS 22 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf6 disulf ? ? F CYS 3 SG ? ? ? 1_555 F CYS 20 SG ? ? F CYS 5 F CYS 22 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf7 disulf ? ? G CYS 3 SG ? ? ? 1_555 G CYS 20 SG ? ? G CYS 5 G CYS 22 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf8 disulf ? ? H CYS 3 SG ? ? ? 1_555 H CYS 20 SG ? ? H CYS 5 H CYS 22 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf9 disulf ? ? I CYS 3 SG ? ? ? 1_555 I CYS 20 SG ? ? I CYS 5 I CYS 22 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf10 disulf ? ? J CYS 3 SG ? ? ? 1_555 J CYS 20 SG ? ? J CYS 5 J CYS 22 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf11 disulf ? ? K CYS 3 SG ? ? ? 1_555 K CYS 20 SG ? ? K CYS 5 K CYS 22 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf12 disulf ? ? L CYS 3 SG ? ? ? 1_555 L CYS 20 SG ? ? L CYS 5 L CYS 22 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf13 disulf ? ? M CYS 3 SG ? ? ? 1_555 M CYS 20 SG ? ? M CYS 5 M CYS 22 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf14 disulf ? ? N CYS 3 SG ? ? ? 1_555 N CYS 20 SG ? ? N CYS 5 N CYS 22 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf15 disulf ? ? O CYS 3 SG ? ? ? 1_555 O CYS 20 SG ? ? O CYS 5 O CYS 22 1_555 ? ? ? ? ? ? ? 2.039 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 3 ? CYS A 20 ? CYS A 5 ? 1_555 CYS A 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS B 3 ? CYS B 20 ? CYS B 5 ? 1_555 CYS B 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS C 3 ? CYS C 20 ? CYS C 5 ? 1_555 CYS C 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS D 3 ? CYS D 20 ? CYS D 5 ? 1_555 CYS D 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS E 3 ? CYS E 20 ? CYS E 5 ? 1_555 CYS E 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS F 3 ? CYS F 20 ? CYS F 5 ? 1_555 CYS F 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS G 3 ? CYS G 20 ? CYS G 5 ? 1_555 CYS G 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS H 3 ? CYS H 20 ? CYS H 5 ? 1_555 CYS H 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 9 CYS I 3 ? CYS I 20 ? CYS I 5 ? 1_555 CYS I 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 10 CYS J 3 ? CYS J 20 ? CYS J 5 ? 1_555 CYS J 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 11 CYS K 3 ? CYS K 20 ? CYS K 5 ? 1_555 CYS K 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 12 CYS L 3 ? CYS L 20 ? CYS L 5 ? 1_555 CYS L 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 13 CYS M 3 ? CYS M 20 ? CYS M 5 ? 1_555 CYS M 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 14 CYS N 3 ? CYS N 20 ? CYS N 5 ? 1_555 CYS N 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 15 CYS O 3 ? CYS O 20 ? CYS O 5 ? 1_555 CYS O 22 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 5 ? AA5 ? 5 ? AA6 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA5 4 5 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA6 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 HIS G 8 ? LYS G 12 ? HIS G 10 LYS G 14 AA1 2 HIS D 8 ? LYS D 12 ? HIS D 10 LYS D 14 AA1 3 HIS A 8 ? LYS A 12 ? HIS A 10 LYS A 14 AA1 4 HIS J 8 ? LYS J 12 ? HIS J 10 LYS J 14 AA1 5 HIS M 8 ? LYS M 12 ? HIS M 10 LYS M 14 AA2 1 ILE G 19 ? PHE G 24 ? ILE G 21 PHE G 26 AA2 2 ILE D 19 ? PHE D 24 ? ILE D 21 PHE D 26 AA2 3 ILE A 19 ? PHE A 24 ? ILE A 21 PHE A 26 AA2 4 ILE J 19 ? PHE J 24 ? ILE J 21 PHE J 26 AA2 5 ILE M 19 ? PHE M 24 ? ILE M 21 PHE M 26 AA3 1 HIS H 8 ? LYS H 12 ? HIS H 10 LYS H 14 AA3 2 HIS E 8 ? LYS E 12 ? HIS E 10 LYS E 14 AA3 3 HIS B 8 ? LYS B 12 ? HIS B 10 LYS B 14 AA3 4 HIS K 8 ? LYS K 12 ? HIS K 10 LYS K 14 AA3 5 HIS N 8 ? LYS N 12 ? HIS N 10 LYS N 14 AA4 1 ILE H 19 ? PHE H 24 ? ILE H 21 PHE H 26 AA4 2 ILE E 19 ? PHE E 24 ? ILE E 21 PHE E 26 AA4 3 ILE B 19 ? PHE B 24 ? ILE B 21 PHE B 26 AA4 4 ILE K 19 ? PHE K 24 ? ILE K 21 PHE K 26 AA4 5 ILE N 19 ? PHE N 24 ? ILE N 21 PHE N 26 AA5 1 HIS F 8 ? LYS F 12 ? HIS F 10 LYS F 14 AA5 2 HIS C 8 ? LYS C 12 ? HIS C 10 LYS C 14 AA5 3 HIS O 8 ? LYS O 12 ? HIS O 10 LYS O 14 AA5 4 HIS I 8 ? LYS I 12 ? HIS I 10 LYS I 14 AA5 5 HIS L 8 ? LYS L 12 ? HIS L 10 LYS L 14 AA6 1 ILE F 19 ? PHE F 24 ? ILE F 21 PHE F 26 AA6 2 ILE C 19 ? PHE C 24 ? ILE C 21 PHE C 26 AA6 3 ILE O 19 ? PHE O 24 ? ILE O 21 PHE O 26 AA6 4 ILE I 19 ? PHE I 24 ? ILE I 21 PHE I 26 AA6 5 ILE L 19 ? PHE L 24 ? ILE L 21 PHE L 26 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LYS G 12 ? O LYS G 14 N ASN D 11 ? N ASN D 13 AA1 2 3 O LYS D 12 ? O LYS D 14 N ASN A 11 ? N ASN A 13 AA1 3 4 N LYS A 12 ? N LYS A 14 O ASN J 11 ? O ASN J 13 AA1 4 5 N LYS J 12 ? N LYS J 14 O ASN M 11 ? O ASN M 13 AA2 1 2 O CYS G 20 ? O CYS G 22 N ILE D 19 ? N ILE D 21 AA2 2 3 O CYS D 20 ? O CYS D 22 N ILE A 19 ? N ILE A 21 AA2 3 4 N CYS A 20 ? N CYS A 22 O ILE J 19 ? O ILE J 21 AA2 4 5 N CYS J 20 ? N CYS J 22 O ILE M 19 ? O ILE M 21 AA3 1 2 O LYS H 12 ? O LYS H 14 N ASN E 11 ? N ASN E 13 AA3 2 3 O LYS E 12 ? O LYS E 14 N ASN B 11 ? N ASN B 13 AA3 3 4 N LYS B 12 ? N LYS B 14 O ASN K 11 ? O ASN K 13 AA3 4 5 N LYS K 12 ? N LYS K 14 O ASN N 11 ? O ASN N 13 AA4 1 2 O CYS H 20 ? O CYS H 22 N ILE E 19 ? N ILE E 21 AA4 2 3 O CYS E 20 ? O CYS E 22 N ILE B 19 ? N ILE B 21 AA4 3 4 N CYS B 20 ? N CYS B 22 O ILE K 19 ? O ILE K 21 AA4 4 5 N CYS K 20 ? N CYS K 22 O ILE N 19 ? O ILE N 21 AA5 1 2 O LYS F 12 ? O LYS F 14 N ASN C 11 ? N ASN C 13 AA5 2 3 N LYS C 12 ? N LYS C 14 O ASN O 11 ? O ASN O 13 AA5 3 4 O LYS O 12 ? O LYS O 14 N ASN I 11 ? N ASN I 13 AA5 4 5 N LYS I 12 ? N LYS I 14 O ASN L 11 ? O ASN L 13 AA6 1 2 O CYS F 20 ? O CYS F 22 N ILE C 19 ? N ILE C 21 AA6 2 3 N CYS C 20 ? N CYS C 22 O ILE O 19 ? O ILE O 21 AA6 3 4 O CYS O 20 ? O CYS O 22 N ILE I 19 ? N ILE I 21 AA6 4 5 N CYS I 20 ? N CYS I 22 O ILE L 19 ? O ILE L 21 # _pdbx_entry_details.entry_id 9OI9 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A CYS 5 ? ? CB A CYS 5 ? ? SG A CYS 5 ? ? 122.24 114.20 8.04 1.10 N 2 1 CA B CYS 5 ? ? CB B CYS 5 ? ? SG B CYS 5 ? ? 122.22 114.20 8.02 1.10 N 3 1 CA C CYS 5 ? ? CB C CYS 5 ? ? SG C CYS 5 ? ? 122.26 114.20 8.06 1.10 N 4 1 CA D CYS 5 ? ? CB D CYS 5 ? ? SG D CYS 5 ? ? 122.25 114.20 8.05 1.10 N 5 1 CA E CYS 5 ? ? CB E CYS 5 ? ? SG E CYS 5 ? ? 122.27 114.20 8.07 1.10 N 6 1 CA F CYS 5 ? ? CB F CYS 5 ? ? SG F CYS 5 ? ? 122.26 114.20 8.06 1.10 N 7 1 CA G CYS 5 ? ? CB G CYS 5 ? ? SG G CYS 5 ? ? 122.20 114.20 8.00 1.10 N 8 1 CA H CYS 5 ? ? CB H CYS 5 ? ? SG H CYS 5 ? ? 122.23 114.20 8.03 1.10 N 9 1 CA I CYS 5 ? ? CB I CYS 5 ? ? SG I CYS 5 ? ? 122.28 114.20 8.08 1.10 N 10 1 CA J CYS 5 ? ? CB J CYS 5 ? ? SG J CYS 5 ? ? 122.18 114.20 7.98 1.10 N 11 1 CA K CYS 5 ? ? CB K CYS 5 ? ? SG K CYS 5 ? ? 122.27 114.20 8.07 1.10 N 12 1 CA L CYS 5 ? ? CB L CYS 5 ? ? SG L CYS 5 ? ? 122.27 114.20 8.07 1.10 N 13 1 CA M CYS 5 ? ? CB M CYS 5 ? ? SG M CYS 5 ? ? 122.23 114.20 8.03 1.10 N 14 1 CA N CYS 5 ? ? CB N CYS 5 ? ? SG N CYS 5 ? ? 122.26 114.20 8.06 1.10 N 15 1 CA O CYS 5 ? ? CB O CYS 5 ? ? SG O CYS 5 ? ? 122.27 114.20 8.07 1.10 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 20 ? ? 58.77 70.69 2 1 CYS A 22 ? ? 59.76 80.38 3 1 LEU B 20 ? ? 58.74 70.68 4 1 CYS B 22 ? ? 59.70 80.43 5 1 LEU C 20 ? ? 58.83 70.65 6 1 CYS C 22 ? ? 59.82 80.34 7 1 LEU D 20 ? ? 58.83 70.66 8 1 CYS D 22 ? ? 59.78 80.37 9 1 LEU E 20 ? ? 58.87 70.63 10 1 CYS E 22 ? ? 59.74 80.40 11 1 LEU F 20 ? ? 58.86 70.70 12 1 CYS F 22 ? ? 59.83 80.32 13 1 LEU G 20 ? ? 58.77 70.68 14 1 CYS G 22 ? ? 59.81 80.36 15 1 LEU H 20 ? ? 58.80 70.66 16 1 CYS H 22 ? ? 59.81 80.34 17 1 LEU I 20 ? ? 58.83 70.68 18 1 CYS I 22 ? ? 59.76 80.34 19 1 LEU J 20 ? ? 58.90 70.69 20 1 CYS J 22 ? ? 59.76 80.40 21 1 LEU K 20 ? ? 58.92 70.66 22 1 CYS K 22 ? ? 59.77 80.34 23 1 LEU L 20 ? ? 58.87 70.65 24 1 CYS L 22 ? ? 59.81 80.36 25 1 LEU M 20 ? ? 58.80 70.67 26 1 CYS M 22 ? ? 59.76 80.35 27 1 LEU N 20 ? ? 58.85 70.66 28 1 CYS N 22 ? ? 59.75 80.39 29 1 LEU O 20 ? ? 58.87 70.64 30 1 CYS O 22 ? ? 59.74 80.41 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9OI9 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9OI9 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.6 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 117271 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type TISSUE _em_entity_assembly.name 'ADan amyloid filament' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9OI9 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9OI9 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9OI9 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 CYS N N N N 58 CYS CA C N R 59 CYS C C N N 60 CYS O O N N 61 CYS CB C N N 62 CYS SG S N N 63 CYS OXT O N N 64 CYS H H N N 65 CYS H2 H N N 66 CYS HA H N N 67 CYS HB2 H N N 68 CYS HB3 H N N 69 CYS HG H N N 70 CYS HXT H N N 71 GLU N N N N 72 GLU CA C N S 73 GLU C C N N 74 GLU O O N N 75 GLU CB C N N 76 GLU CG C N N 77 GLU CD C N N 78 GLU OE1 O N N 79 GLU OE2 O N N 80 GLU OXT O N N 81 GLU H H N N 82 GLU H2 H N N 83 GLU HA H N N 84 GLU HB2 H N N 85 GLU HB3 H N N 86 GLU HG2 H N N 87 GLU HG3 H N N 88 GLU HE2 H N N 89 GLU HXT H N N 90 HIS N N N N 91 HIS CA C N S 92 HIS C C N N 93 HIS O O N N 94 HIS CB C N N 95 HIS CG C Y N 96 HIS ND1 N Y N 97 HIS CD2 C Y N 98 HIS CE1 C Y N 99 HIS NE2 N Y N 100 HIS OXT O N N 101 HIS H H N N 102 HIS H2 H N N 103 HIS HA H N N 104 HIS HB2 H N N 105 HIS HB3 H N N 106 HIS HD1 H N N 107 HIS HD2 H N N 108 HIS HE1 H N N 109 HIS HE2 H N N 110 HIS HXT H N N 111 ILE N N N N 112 ILE CA C N S 113 ILE C C N N 114 ILE O O N N 115 ILE CB C N S 116 ILE CG1 C N N 117 ILE CG2 C N N 118 ILE CD1 C N N 119 ILE OXT O N N 120 ILE H H N N 121 ILE H2 H N N 122 ILE HA H N N 123 ILE HB H N N 124 ILE HG12 H N N 125 ILE HG13 H N N 126 ILE HG21 H N N 127 ILE HG22 H N N 128 ILE HG23 H N N 129 ILE HD11 H N N 130 ILE HD12 H N N 131 ILE HD13 H N N 132 ILE HXT H N N 133 LEU N N N N 134 LEU CA C N S 135 LEU C C N N 136 LEU O O N N 137 LEU CB C N N 138 LEU CG C N N 139 LEU CD1 C N N 140 LEU CD2 C N N 141 LEU OXT O N N 142 LEU H H N N 143 LEU H2 H N N 144 LEU HA H N N 145 LEU HB2 H N N 146 LEU HB3 H N N 147 LEU HG H N N 148 LEU HD11 H N N 149 LEU HD12 H N N 150 LEU HD13 H N N 151 LEU HD21 H N N 152 LEU HD22 H N N 153 LEU HD23 H N N 154 LEU HXT H N N 155 LYS N N N N 156 LYS CA C N S 157 LYS C C N N 158 LYS O O N N 159 LYS CB C N N 160 LYS CG C N N 161 LYS CD C N N 162 LYS CE C N N 163 LYS NZ N N N 164 LYS OXT O N N 165 LYS H H N N 166 LYS H2 H N N 167 LYS HA H N N 168 LYS HB2 H N N 169 LYS HB3 H N N 170 LYS HG2 H N N 171 LYS HG3 H N N 172 LYS HD2 H N N 173 LYS HD3 H N N 174 LYS HE2 H N N 175 LYS HE3 H N N 176 LYS HZ1 H N N 177 LYS HZ2 H N N 178 LYS HZ3 H N N 179 LYS HXT H N N 180 PHE N N N N 181 PHE CA C N S 182 PHE C C N N 183 PHE O O N N 184 PHE CB C N N 185 PHE CG C Y N 186 PHE CD1 C Y N 187 PHE CD2 C Y N 188 PHE CE1 C Y N 189 PHE CE2 C Y N 190 PHE CZ C Y N 191 PHE OXT O N N 192 PHE H H N N 193 PHE H2 H N N 194 PHE HA H N N 195 PHE HB2 H N N 196 PHE HB3 H N N 197 PHE HD1 H N N 198 PHE HD2 H N N 199 PHE HE1 H N N 200 PHE HE2 H N N 201 PHE HZ H N N 202 PHE HXT H N N 203 SER N N N N 204 SER CA C N S 205 SER C C N N 206 SER O O N N 207 SER CB C N N 208 SER OG O N N 209 SER OXT O N N 210 SER H H N N 211 SER H2 H N N 212 SER HA H N N 213 SER HB2 H N N 214 SER HB3 H N N 215 SER HG H N N 216 SER HXT H N N 217 THR N N N N 218 THR CA C N S 219 THR C C N N 220 THR O O N N 221 THR CB C N R 222 THR OG1 O N N 223 THR CG2 C N N 224 THR OXT O N N 225 THR H H N N 226 THR H2 H N N 227 THR HA H N N 228 THR HB H N N 229 THR HG1 H N N 230 THR HG21 H N N 231 THR HG22 H N N 232 THR HG23 H N N 233 THR HXT H N N 234 VAL N N N N 235 VAL CA C N S 236 VAL C C N N 237 VAL O O N N 238 VAL CB C N N 239 VAL CG1 C N N 240 VAL CG2 C N N 241 VAL OXT O N N 242 VAL H H N N 243 VAL H2 H N N 244 VAL HA H N N 245 VAL HB H N N 246 VAL HG11 H N N 247 VAL HG12 H N N 248 VAL HG13 H N N 249 VAL HG21 H N N 250 VAL HG22 H N N 251 VAL HG23 H N N 252 VAL HXT H N N 253 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 CYS N CA sing N N 55 CYS N H sing N N 56 CYS N H2 sing N N 57 CYS CA C sing N N 58 CYS CA CB sing N N 59 CYS CA HA sing N N 60 CYS C O doub N N 61 CYS C OXT sing N N 62 CYS CB SG sing N N 63 CYS CB HB2 sing N N 64 CYS CB HB3 sing N N 65 CYS SG HG sing N N 66 CYS OXT HXT sing N N 67 GLU N CA sing N N 68 GLU N H sing N N 69 GLU N H2 sing N N 70 GLU CA C sing N N 71 GLU CA CB sing N N 72 GLU CA HA sing N N 73 GLU C O doub N N 74 GLU C OXT sing N N 75 GLU CB CG sing N N 76 GLU CB HB2 sing N N 77 GLU CB HB3 sing N N 78 GLU CG CD sing N N 79 GLU CG HG2 sing N N 80 GLU CG HG3 sing N N 81 GLU CD OE1 doub N N 82 GLU CD OE2 sing N N 83 GLU OE2 HE2 sing N N 84 GLU OXT HXT sing N N 85 HIS N CA sing N N 86 HIS N H sing N N 87 HIS N H2 sing N N 88 HIS CA C sing N N 89 HIS CA CB sing N N 90 HIS CA HA sing N N 91 HIS C O doub N N 92 HIS C OXT sing N N 93 HIS CB CG sing N N 94 HIS CB HB2 sing N N 95 HIS CB HB3 sing N N 96 HIS CG ND1 sing Y N 97 HIS CG CD2 doub Y N 98 HIS ND1 CE1 doub Y N 99 HIS ND1 HD1 sing N N 100 HIS CD2 NE2 sing Y N 101 HIS CD2 HD2 sing N N 102 HIS CE1 NE2 sing Y N 103 HIS CE1 HE1 sing N N 104 HIS NE2 HE2 sing N N 105 HIS OXT HXT sing N N 106 ILE N CA sing N N 107 ILE N H sing N N 108 ILE N H2 sing N N 109 ILE CA C sing N N 110 ILE CA CB sing N N 111 ILE CA HA sing N N 112 ILE C O doub N N 113 ILE C OXT sing N N 114 ILE CB CG1 sing N N 115 ILE CB CG2 sing N N 116 ILE CB HB sing N N 117 ILE CG1 CD1 sing N N 118 ILE CG1 HG12 sing N N 119 ILE CG1 HG13 sing N N 120 ILE CG2 HG21 sing N N 121 ILE CG2 HG22 sing N N 122 ILE CG2 HG23 sing N N 123 ILE CD1 HD11 sing N N 124 ILE CD1 HD12 sing N N 125 ILE CD1 HD13 sing N N 126 ILE OXT HXT sing N N 127 LEU N CA sing N N 128 LEU N H sing N N 129 LEU N H2 sing N N 130 LEU CA C sing N N 131 LEU CA CB sing N N 132 LEU CA HA sing N N 133 LEU C O doub N N 134 LEU C OXT sing N N 135 LEU CB CG sing N N 136 LEU CB HB2 sing N N 137 LEU CB HB3 sing N N 138 LEU CG CD1 sing N N 139 LEU CG CD2 sing N N 140 LEU CG HG sing N N 141 LEU CD1 HD11 sing N N 142 LEU CD1 HD12 sing N N 143 LEU CD1 HD13 sing N N 144 LEU CD2 HD21 sing N N 145 LEU CD2 HD22 sing N N 146 LEU CD2 HD23 sing N N 147 LEU OXT HXT sing N N 148 LYS N CA sing N N 149 LYS N H sing N N 150 LYS N H2 sing N N 151 LYS CA C sing N N 152 LYS CA CB sing N N 153 LYS CA HA sing N N 154 LYS C O doub N N 155 LYS C OXT sing N N 156 LYS CB CG sing N N 157 LYS CB HB2 sing N N 158 LYS CB HB3 sing N N 159 LYS CG CD sing N N 160 LYS CG HG2 sing N N 161 LYS CG HG3 sing N N 162 LYS CD CE sing N N 163 LYS CD HD2 sing N N 164 LYS CD HD3 sing N N 165 LYS CE NZ sing N N 166 LYS CE HE2 sing N N 167 LYS CE HE3 sing N N 168 LYS NZ HZ1 sing N N 169 LYS NZ HZ2 sing N N 170 LYS NZ HZ3 sing N N 171 LYS OXT HXT sing N N 172 PHE N CA sing N N 173 PHE N H sing N N 174 PHE N H2 sing N N 175 PHE CA C sing N N 176 PHE CA CB sing N N 177 PHE CA HA sing N N 178 PHE C O doub N N 179 PHE C OXT sing N N 180 PHE CB CG sing N N 181 PHE CB HB2 sing N N 182 PHE CB HB3 sing N N 183 PHE CG CD1 doub Y N 184 PHE CG CD2 sing Y N 185 PHE CD1 CE1 sing Y N 186 PHE CD1 HD1 sing N N 187 PHE CD2 CE2 doub Y N 188 PHE CD2 HD2 sing N N 189 PHE CE1 CZ doub Y N 190 PHE CE1 HE1 sing N N 191 PHE CE2 CZ sing Y N 192 PHE CE2 HE2 sing N N 193 PHE CZ HZ sing N N 194 PHE OXT HXT sing N N 195 SER N CA sing N N 196 SER N H sing N N 197 SER N H2 sing N N 198 SER CA C sing N N 199 SER CA CB sing N N 200 SER CA HA sing N N 201 SER C O doub N N 202 SER C OXT sing N N 203 SER CB OG sing N N 204 SER CB HB2 sing N N 205 SER CB HB3 sing N N 206 SER OG HG sing N N 207 SER OXT HXT sing N N 208 THR N CA sing N N 209 THR N H sing N N 210 THR N H2 sing N N 211 THR CA C sing N N 212 THR CA CB sing N N 213 THR CA HA sing N N 214 THR C O doub N N 215 THR C OXT sing N N 216 THR CB OG1 sing N N 217 THR CB CG2 sing N N 218 THR CB HB sing N N 219 THR OG1 HG1 sing N N 220 THR CG2 HG21 sing N N 221 THR CG2 HG22 sing N N 222 THR CG2 HG23 sing N N 223 THR OXT HXT sing N N 224 VAL N CA sing N N 225 VAL N H sing N N 226 VAL N H2 sing N N 227 VAL CA C sing N N 228 VAL CA CB sing N N 229 VAL CA HA sing N N 230 VAL C O doub N N 231 VAL C OXT sing N N 232 VAL CB CG1 sing N N 233 VAL CB CG2 sing N N 234 VAL CB HB sing N N 235 VAL CG1 HG11 sing N N 236 VAL CG1 HG12 sing N N 237 VAL CG1 HG13 sing N N 238 VAL CG2 HG21 sing N N 239 VAL CG2 HG22 sing N N 240 VAL CG2 HG23 sing N N 241 VAL OXT HXT sing N N 242 # _em_admin.current_status REL _em_admin.deposition_date 2025-05-06 _em_admin.deposition_site RCSB _em_admin.entry_id 9OI9 _em_admin.last_update 2026-05-27 _em_admin.map_release_date 2026-05-27 _em_admin.title 'Structure of ADan amyloid filaments extracted from human brain of Familial Danish Dementia patient' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C3 _em_helical_entity.angular_rotation_per_subunit -1.48 _em_helical_entity.axial_rise_per_subunit 4.79 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' ? 1 'National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)' 'United States' ? 2 # _atom_sites.entry_id 9OI9 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #