data_9OID # _entry.id 9OID # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.414 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9OID pdb_00009oid 10.2210/pdb9oid/pdb WWPDB D_1000295652 ? ? EMDB EMD-70521 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-05-27 ? 2 'EM metadata' 1 0 2026-05-27 ? 3 'Additional map' 1 0 2026-05-27 1 4 FSC 1 0 2026-05-27 ? 5 'Half map' 1 0 2026-05-27 1 6 'Half map' 1 0 2026-05-27 2 7 Image 1 0 2026-05-27 ? 8 'Primary map' 1 0 2026-05-27 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 FSC repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 'Half map' repository 'Initial release' ? ? 7 7 Image repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9OID _pdbx_database_status.recvd_initial_deposition_date 2025-05-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Structure of ADan amyloid filaments from synthesized ADan peptide' _pdbx_database_related.db_id EMD-70521 _pdbx_database_related.content_type 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 4 rvidal@iu.edu Ruben Vidal ? 'principal investigator/group leader' 0000-0002-5803-3871 5 wen.jiang@psu.edu Wen Jiang ? 'principal investigator/group leader' 0000-0002-1292-2411 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ozcan, K.A.' 1 ? 'Vago, F.' 2 ? 'Bharath, S.R.' 3 ? 'Jiang, W.' 4 ? 'Vidal, R.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Cryo-EM structures of ADan and ABri filaments from FDD and FBD' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ozcan, K.A.' 1 ? primary 'Vago, F.' 2 ? primary 'Bharath, S.R.' 3 ? primary 'Jiang, W.' 4 ? primary 'Vidal, R.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'ADan (IT2MB mutant)' _entity.formula_weight 3777.311 _entity.pdbx_number_of_molecules 10 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ASNCFAIRHFENKFAVETLICFNLFLNSQEKH _entity_poly.pdbx_seq_one_letter_code_can ASNCFAIRHFENKFAVETLICFNLFLNSQEKH _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 SER n 1 3 ASN n 1 4 CYS n 1 5 PHE n 1 6 ALA n 1 7 ILE n 1 8 ARG n 1 9 HIS n 1 10 PHE n 1 11 GLU n 1 12 ASN n 1 13 LYS n 1 14 PHE n 1 15 ALA n 1 16 VAL n 1 17 GLU n 1 18 THR n 1 19 LEU n 1 20 ILE n 1 21 CYS n 1 22 PHE n 1 23 ASN n 1 24 LEU n 1 25 PHE n 1 26 LEU n 1 27 ASN n 1 28 SER n 1 29 GLN n 1 30 GLU n 1 31 LYS n 1 32 HIS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 32 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 2 2 ALA ALA A . n A 1 2 SER 2 3 3 SER SER A . n A 1 3 ASN 3 4 4 ASN ASN A . n A 1 4 CYS 4 5 5 CYS CYS A . n A 1 5 PHE 5 6 6 PHE PHE A . n A 1 6 ALA 6 7 7 ALA ALA A . n A 1 7 ILE 7 8 8 ILE ILE A . n A 1 8 ARG 8 9 9 ARG ARG A . n A 1 9 HIS 9 10 10 HIS HIS A . n A 1 10 PHE 10 11 11 PHE PHE A . n A 1 11 GLU 11 12 12 GLU GLU A . n A 1 12 ASN 12 13 13 ASN ASN A . n A 1 13 LYS 13 14 14 LYS LYS A . n A 1 14 PHE 14 15 15 PHE PHE A . n A 1 15 ALA 15 16 16 ALA ALA A . n A 1 16 VAL 16 17 17 VAL VAL A . n A 1 17 GLU 17 18 18 GLU GLU A . n A 1 18 THR 18 19 19 THR THR A . n A 1 19 LEU 19 20 20 LEU LEU A . n A 1 20 ILE 20 21 21 ILE ILE A . n A 1 21 CYS 21 22 22 CYS CYS A . n A 1 22 PHE 22 23 23 PHE PHE A . n A 1 23 ASN 23 24 24 ASN ASN A . n A 1 24 LEU 24 25 25 LEU LEU A . n A 1 25 PHE 25 26 26 PHE PHE A . n A 1 26 LEU 26 27 27 LEU LEU A . n A 1 27 ASN 27 28 28 ASN ASN A . n A 1 28 SER 28 29 29 SER SER A . n A 1 29 GLN 29 30 30 GLN GLN A . n A 1 30 GLU 30 31 31 GLU GLU A . n A 1 31 LYS 31 32 32 LYS LYS A . n A 1 32 HIS 32 33 33 HIS HIS A . n B 1 1 ALA 1 2 2 ALA ALA B . n B 1 2 SER 2 3 3 SER SER B . n B 1 3 ASN 3 4 4 ASN ASN B . n B 1 4 CYS 4 5 5 CYS CYS B . n B 1 5 PHE 5 6 6 PHE PHE B . n B 1 6 ALA 6 7 7 ALA ALA B . n B 1 7 ILE 7 8 8 ILE ILE B . n B 1 8 ARG 8 9 9 ARG ARG B . n B 1 9 HIS 9 10 10 HIS HIS B . n B 1 10 PHE 10 11 11 PHE PHE B . n B 1 11 GLU 11 12 12 GLU GLU B . n B 1 12 ASN 12 13 13 ASN ASN B . n B 1 13 LYS 13 14 14 LYS LYS B . n B 1 14 PHE 14 15 15 PHE PHE B . n B 1 15 ALA 15 16 16 ALA ALA B . n B 1 16 VAL 16 17 17 VAL VAL B . n B 1 17 GLU 17 18 18 GLU GLU B . n B 1 18 THR 18 19 19 THR THR B . n B 1 19 LEU 19 20 20 LEU LEU B . n B 1 20 ILE 20 21 21 ILE ILE B . n B 1 21 CYS 21 22 22 CYS CYS B . n B 1 22 PHE 22 23 23 PHE PHE B . n B 1 23 ASN 23 24 24 ASN ASN B . n B 1 24 LEU 24 25 25 LEU LEU B . n B 1 25 PHE 25 26 26 PHE PHE B . n B 1 26 LEU 26 27 27 LEU LEU B . n B 1 27 ASN 27 28 28 ASN ASN B . n B 1 28 SER 28 29 29 SER SER B . n B 1 29 GLN 29 30 30 GLN GLN B . n B 1 30 GLU 30 31 31 GLU GLU B . n B 1 31 LYS 31 32 32 LYS LYS B . n B 1 32 HIS 32 33 33 HIS HIS B . n C 1 1 ALA 1 2 2 ALA ALA C . n C 1 2 SER 2 3 3 SER SER C . n C 1 3 ASN 3 4 4 ASN ASN C . n C 1 4 CYS 4 5 5 CYS CYS C . n C 1 5 PHE 5 6 6 PHE PHE C . n C 1 6 ALA 6 7 7 ALA ALA C . n C 1 7 ILE 7 8 8 ILE ILE C . n C 1 8 ARG 8 9 9 ARG ARG C . n C 1 9 HIS 9 10 10 HIS HIS C . n C 1 10 PHE 10 11 11 PHE PHE C . n C 1 11 GLU 11 12 12 GLU GLU C . n C 1 12 ASN 12 13 13 ASN ASN C . n C 1 13 LYS 13 14 14 LYS LYS C . n C 1 14 PHE 14 15 15 PHE PHE C . n C 1 15 ALA 15 16 16 ALA ALA C . n C 1 16 VAL 16 17 17 VAL VAL C . n C 1 17 GLU 17 18 18 GLU GLU C . n C 1 18 THR 18 19 19 THR THR C . n C 1 19 LEU 19 20 20 LEU LEU C . n C 1 20 ILE 20 21 21 ILE ILE C . n C 1 21 CYS 21 22 22 CYS CYS C . n C 1 22 PHE 22 23 23 PHE PHE C . n C 1 23 ASN 23 24 24 ASN ASN C . n C 1 24 LEU 24 25 25 LEU LEU C . n C 1 25 PHE 25 26 26 PHE PHE C . n C 1 26 LEU 26 27 27 LEU LEU C . n C 1 27 ASN 27 28 28 ASN ASN C . n C 1 28 SER 28 29 29 SER SER C . n C 1 29 GLN 29 30 30 GLN GLN C . n C 1 30 GLU 30 31 31 GLU GLU C . n C 1 31 LYS 31 32 32 LYS LYS C . n C 1 32 HIS 32 33 33 HIS HIS C . n D 1 1 ALA 1 2 2 ALA ALA D . n D 1 2 SER 2 3 3 SER SER D . n D 1 3 ASN 3 4 4 ASN ASN D . n D 1 4 CYS 4 5 5 CYS CYS D . n D 1 5 PHE 5 6 6 PHE PHE D . n D 1 6 ALA 6 7 7 ALA ALA D . n D 1 7 ILE 7 8 8 ILE ILE D . n D 1 8 ARG 8 9 9 ARG ARG D . n D 1 9 HIS 9 10 10 HIS HIS D . n D 1 10 PHE 10 11 11 PHE PHE D . n D 1 11 GLU 11 12 12 GLU GLU D . n D 1 12 ASN 12 13 13 ASN ASN D . n D 1 13 LYS 13 14 14 LYS LYS D . n D 1 14 PHE 14 15 15 PHE PHE D . n D 1 15 ALA 15 16 16 ALA ALA D . n D 1 16 VAL 16 17 17 VAL VAL D . n D 1 17 GLU 17 18 18 GLU GLU D . n D 1 18 THR 18 19 19 THR THR D . n D 1 19 LEU 19 20 20 LEU LEU D . n D 1 20 ILE 20 21 21 ILE ILE D . n D 1 21 CYS 21 22 22 CYS CYS D . n D 1 22 PHE 22 23 23 PHE PHE D . n D 1 23 ASN 23 24 24 ASN ASN D . n D 1 24 LEU 24 25 25 LEU LEU D . n D 1 25 PHE 25 26 26 PHE PHE D . n D 1 26 LEU 26 27 27 LEU LEU D . n D 1 27 ASN 27 28 28 ASN ASN D . n D 1 28 SER 28 29 29 SER SER D . n D 1 29 GLN 29 30 30 GLN GLN D . n D 1 30 GLU 30 31 31 GLU GLU D . n D 1 31 LYS 31 32 32 LYS LYS D . n D 1 32 HIS 32 33 33 HIS HIS D . n E 1 1 ALA 1 2 2 ALA ALA E . n E 1 2 SER 2 3 3 SER SER E . n E 1 3 ASN 3 4 4 ASN ASN E . n E 1 4 CYS 4 5 5 CYS CYS E . n E 1 5 PHE 5 6 6 PHE PHE E . n E 1 6 ALA 6 7 7 ALA ALA E . n E 1 7 ILE 7 8 8 ILE ILE E . n E 1 8 ARG 8 9 9 ARG ARG E . n E 1 9 HIS 9 10 10 HIS HIS E . n E 1 10 PHE 10 11 11 PHE PHE E . n E 1 11 GLU 11 12 12 GLU GLU E . n E 1 12 ASN 12 13 13 ASN ASN E . n E 1 13 LYS 13 14 14 LYS LYS E . n E 1 14 PHE 14 15 15 PHE PHE E . n E 1 15 ALA 15 16 16 ALA ALA E . n E 1 16 VAL 16 17 17 VAL VAL E . n E 1 17 GLU 17 18 18 GLU GLU E . n E 1 18 THR 18 19 19 THR THR E . n E 1 19 LEU 19 20 20 LEU LEU E . n E 1 20 ILE 20 21 21 ILE ILE E . n E 1 21 CYS 21 22 22 CYS CYS E . n E 1 22 PHE 22 23 23 PHE PHE E . n E 1 23 ASN 23 24 24 ASN ASN E . n E 1 24 LEU 24 25 25 LEU LEU E . n E 1 25 PHE 25 26 26 PHE PHE E . n E 1 26 LEU 26 27 27 LEU LEU E . n E 1 27 ASN 27 28 28 ASN ASN E . n E 1 28 SER 28 29 29 SER SER E . n E 1 29 GLN 29 30 30 GLN GLN E . n E 1 30 GLU 30 31 31 GLU GLU E . n E 1 31 LYS 31 32 32 LYS LYS E . n E 1 32 HIS 32 33 33 HIS HIS E . n F 1 1 ALA 1 2 2 ALA ALA F . n F 1 2 SER 2 3 3 SER SER F . n F 1 3 ASN 3 4 4 ASN ASN F . n F 1 4 CYS 4 5 5 CYS CYS F . n F 1 5 PHE 5 6 6 PHE PHE F . n F 1 6 ALA 6 7 7 ALA ALA F . n F 1 7 ILE 7 8 8 ILE ILE F . n F 1 8 ARG 8 9 9 ARG ARG F . n F 1 9 HIS 9 10 10 HIS HIS F . n F 1 10 PHE 10 11 11 PHE PHE F . n F 1 11 GLU 11 12 12 GLU GLU F . n F 1 12 ASN 12 13 13 ASN ASN F . n F 1 13 LYS 13 14 14 LYS LYS F . n F 1 14 PHE 14 15 15 PHE PHE F . n F 1 15 ALA 15 16 16 ALA ALA F . n F 1 16 VAL 16 17 17 VAL VAL F . n F 1 17 GLU 17 18 18 GLU GLU F . n F 1 18 THR 18 19 19 THR THR F . n F 1 19 LEU 19 20 20 LEU LEU F . n F 1 20 ILE 20 21 21 ILE ILE F . n F 1 21 CYS 21 22 22 CYS CYS F . n F 1 22 PHE 22 23 23 PHE PHE F . n F 1 23 ASN 23 24 24 ASN ASN F . n F 1 24 LEU 24 25 25 LEU LEU F . n F 1 25 PHE 25 26 26 PHE PHE F . n F 1 26 LEU 26 27 27 LEU LEU F . n F 1 27 ASN 27 28 28 ASN ASN F . n F 1 28 SER 28 29 29 SER SER F . n F 1 29 GLN 29 30 30 GLN GLN F . n F 1 30 GLU 30 31 31 GLU GLU F . n F 1 31 LYS 31 32 32 LYS LYS F . n F 1 32 HIS 32 33 33 HIS HIS F . n G 1 1 ALA 1 2 2 ALA ALA G . n G 1 2 SER 2 3 3 SER SER G . n G 1 3 ASN 3 4 4 ASN ASN G . n G 1 4 CYS 4 5 5 CYS CYS G . n G 1 5 PHE 5 6 6 PHE PHE G . n G 1 6 ALA 6 7 7 ALA ALA G . n G 1 7 ILE 7 8 8 ILE ILE G . n G 1 8 ARG 8 9 9 ARG ARG G . n G 1 9 HIS 9 10 10 HIS HIS G . n G 1 10 PHE 10 11 11 PHE PHE G . n G 1 11 GLU 11 12 12 GLU GLU G . n G 1 12 ASN 12 13 13 ASN ASN G . n G 1 13 LYS 13 14 14 LYS LYS G . n G 1 14 PHE 14 15 15 PHE PHE G . n G 1 15 ALA 15 16 16 ALA ALA G . n G 1 16 VAL 16 17 17 VAL VAL G . n G 1 17 GLU 17 18 18 GLU GLU G . n G 1 18 THR 18 19 19 THR THR G . n G 1 19 LEU 19 20 20 LEU LEU G . n G 1 20 ILE 20 21 21 ILE ILE G . n G 1 21 CYS 21 22 22 CYS CYS G . n G 1 22 PHE 22 23 23 PHE PHE G . n G 1 23 ASN 23 24 24 ASN ASN G . n G 1 24 LEU 24 25 25 LEU LEU G . n G 1 25 PHE 25 26 26 PHE PHE G . n G 1 26 LEU 26 27 27 LEU LEU G . n G 1 27 ASN 27 28 28 ASN ASN G . n G 1 28 SER 28 29 29 SER SER G . n G 1 29 GLN 29 30 30 GLN GLN G . n G 1 30 GLU 30 31 31 GLU GLU G . n G 1 31 LYS 31 32 32 LYS LYS G . n G 1 32 HIS 32 33 33 HIS HIS G . n H 1 1 ALA 1 2 2 ALA ALA H . n H 1 2 SER 2 3 3 SER SER H . n H 1 3 ASN 3 4 4 ASN ASN H . n H 1 4 CYS 4 5 5 CYS CYS H . n H 1 5 PHE 5 6 6 PHE PHE H . n H 1 6 ALA 6 7 7 ALA ALA H . n H 1 7 ILE 7 8 8 ILE ILE H . n H 1 8 ARG 8 9 9 ARG ARG H . n H 1 9 HIS 9 10 10 HIS HIS H . n H 1 10 PHE 10 11 11 PHE PHE H . n H 1 11 GLU 11 12 12 GLU GLU H . n H 1 12 ASN 12 13 13 ASN ASN H . n H 1 13 LYS 13 14 14 LYS LYS H . n H 1 14 PHE 14 15 15 PHE PHE H . n H 1 15 ALA 15 16 16 ALA ALA H . n H 1 16 VAL 16 17 17 VAL VAL H . n H 1 17 GLU 17 18 18 GLU GLU H . n H 1 18 THR 18 19 19 THR THR H . n H 1 19 LEU 19 20 20 LEU LEU H . n H 1 20 ILE 20 21 21 ILE ILE H . n H 1 21 CYS 21 22 22 CYS CYS H . n H 1 22 PHE 22 23 23 PHE PHE H . n H 1 23 ASN 23 24 24 ASN ASN H . n H 1 24 LEU 24 25 25 LEU LEU H . n H 1 25 PHE 25 26 26 PHE PHE H . n H 1 26 LEU 26 27 27 LEU LEU H . n H 1 27 ASN 27 28 28 ASN ASN H . n H 1 28 SER 28 29 29 SER SER H . n H 1 29 GLN 29 30 30 GLN GLN H . n H 1 30 GLU 30 31 31 GLU GLU H . n H 1 31 LYS 31 32 32 LYS LYS H . n H 1 32 HIS 32 33 33 HIS HIS H . n I 1 1 ALA 1 2 2 ALA ALA I . n I 1 2 SER 2 3 3 SER SER I . n I 1 3 ASN 3 4 4 ASN ASN I . n I 1 4 CYS 4 5 5 CYS CYS I . n I 1 5 PHE 5 6 6 PHE PHE I . n I 1 6 ALA 6 7 7 ALA ALA I . n I 1 7 ILE 7 8 8 ILE ILE I . n I 1 8 ARG 8 9 9 ARG ARG I . n I 1 9 HIS 9 10 10 HIS HIS I . n I 1 10 PHE 10 11 11 PHE PHE I . n I 1 11 GLU 11 12 12 GLU GLU I . n I 1 12 ASN 12 13 13 ASN ASN I . n I 1 13 LYS 13 14 14 LYS LYS I . n I 1 14 PHE 14 15 15 PHE PHE I . n I 1 15 ALA 15 16 16 ALA ALA I . n I 1 16 VAL 16 17 17 VAL VAL I . n I 1 17 GLU 17 18 18 GLU GLU I . n I 1 18 THR 18 19 19 THR THR I . n I 1 19 LEU 19 20 20 LEU LEU I . n I 1 20 ILE 20 21 21 ILE ILE I . n I 1 21 CYS 21 22 22 CYS CYS I . n I 1 22 PHE 22 23 23 PHE PHE I . n I 1 23 ASN 23 24 24 ASN ASN I . n I 1 24 LEU 24 25 25 LEU LEU I . n I 1 25 PHE 25 26 26 PHE PHE I . n I 1 26 LEU 26 27 27 LEU LEU I . n I 1 27 ASN 27 28 28 ASN ASN I . n I 1 28 SER 28 29 29 SER SER I . n I 1 29 GLN 29 30 30 GLN GLN I . n I 1 30 GLU 30 31 31 GLU GLU I . n I 1 31 LYS 31 32 32 LYS LYS I . n I 1 32 HIS 32 33 33 HIS HIS I . n J 1 1 ALA 1 2 2 ALA ALA J . n J 1 2 SER 2 3 3 SER SER J . n J 1 3 ASN 3 4 4 ASN ASN J . n J 1 4 CYS 4 5 5 CYS CYS J . n J 1 5 PHE 5 6 6 PHE PHE J . n J 1 6 ALA 6 7 7 ALA ALA J . n J 1 7 ILE 7 8 8 ILE ILE J . n J 1 8 ARG 8 9 9 ARG ARG J . n J 1 9 HIS 9 10 10 HIS HIS J . n J 1 10 PHE 10 11 11 PHE PHE J . n J 1 11 GLU 11 12 12 GLU GLU J . n J 1 12 ASN 12 13 13 ASN ASN J . n J 1 13 LYS 13 14 14 LYS LYS J . n J 1 14 PHE 14 15 15 PHE PHE J . n J 1 15 ALA 15 16 16 ALA ALA J . n J 1 16 VAL 16 17 17 VAL VAL J . n J 1 17 GLU 17 18 18 GLU GLU J . n J 1 18 THR 18 19 19 THR THR J . n J 1 19 LEU 19 20 20 LEU LEU J . n J 1 20 ILE 20 21 21 ILE ILE J . n J 1 21 CYS 21 22 22 CYS CYS J . n J 1 22 PHE 22 23 23 PHE PHE J . n J 1 23 ASN 23 24 24 ASN ASN J . n J 1 24 LEU 24 25 25 LEU LEU J . n J 1 25 PHE 25 26 26 PHE PHE J . n J 1 26 LEU 26 27 27 LEU LEU J . n J 1 27 ASN 27 28 28 ASN ASN J . n J 1 28 SER 28 29 29 SER SER J . n J 1 29 GLN 29 30 30 GLN GLN J . n J 1 30 GLU 30 31 31 GLU GLU J . n J 1 31 LYS 31 32 32 LYS LYS J . n J 1 32 HIS 32 33 33 HIS HIS J . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9OID _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9OID _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9OID _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9OID _struct.title 'Structure of ADan amyloid filaments from synthesized ADan peptide' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9OID _struct_keywords.text 'amyloid, filament, neurodegeneration, brain, ex vivo, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9OID _struct_ref.pdbx_db_accession 9OID _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9OID A 1 ? 32 ? 9OID 2 ? 33 ? 2 33 2 1 9OID B 1 ? 32 ? 9OID 2 ? 33 ? 2 33 3 1 9OID C 1 ? 32 ? 9OID 2 ? 33 ? 2 33 4 1 9OID D 1 ? 32 ? 9OID 2 ? 33 ? 2 33 5 1 9OID E 1 ? 32 ? 9OID 2 ? 33 ? 2 33 6 1 9OID F 1 ? 32 ? 9OID 2 ? 33 ? 2 33 7 1 9OID G 1 ? 32 ? 9OID 2 ? 33 ? 2 33 8 1 9OID H 1 ? 32 ? 9OID 2 ? 33 ? 2 33 9 1 9OID I 1 ? 32 ? 9OID 2 ? 33 ? 2 33 10 1 9OID J 1 ? 32 ? 9OID 2 ? 33 ? 2 33 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 21 SG ? ? A CYS 5 A CYS 22 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf2 disulf ? ? B CYS 4 SG ? ? ? 1_555 B CYS 21 SG ? ? B CYS 5 B CYS 22 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf3 disulf ? ? C CYS 4 SG ? ? ? 1_555 C CYS 21 SG ? ? C CYS 5 C CYS 22 1_555 ? ? ? ? ? ? ? 2.022 ? ? disulf4 disulf ? ? D CYS 4 SG ? ? ? 1_555 D CYS 21 SG ? ? D CYS 5 D CYS 22 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf5 disulf ? ? E CYS 4 SG ? ? ? 1_555 E CYS 21 SG ? ? E CYS 5 E CYS 22 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf6 disulf ? ? F CYS 4 SG ? ? ? 1_555 F CYS 21 SG ? ? F CYS 5 F CYS 22 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf7 disulf ? ? G CYS 4 SG ? ? ? 1_555 G CYS 21 SG ? ? G CYS 5 G CYS 22 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf8 disulf ? ? H CYS 4 SG ? ? ? 1_555 H CYS 21 SG ? ? H CYS 5 H CYS 22 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf9 disulf ? ? I CYS 4 SG ? ? ? 1_555 I CYS 21 SG ? ? I CYS 5 I CYS 22 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf10 disulf ? ? J CYS 4 SG ? ? ? 1_555 J CYS 21 SG ? ? J CYS 5 J CYS 22 1_555 ? ? ? ? ? ? ? 2.023 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 4 ? CYS A 21 ? CYS A 5 ? 1_555 CYS A 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS B 4 ? CYS B 21 ? CYS B 5 ? 1_555 CYS B 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS C 4 ? CYS C 21 ? CYS C 5 ? 1_555 CYS C 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS D 4 ? CYS D 21 ? CYS D 5 ? 1_555 CYS D 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS E 4 ? CYS E 21 ? CYS E 5 ? 1_555 CYS E 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS F 4 ? CYS F 21 ? CYS F 5 ? 1_555 CYS F 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS G 4 ? CYS G 21 ? CYS G 5 ? 1_555 CYS G 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS H 4 ? CYS H 21 ? CYS H 5 ? 1_555 CYS H 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 9 CYS I 4 ? CYS I 21 ? CYS I 5 ? 1_555 CYS I 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 10 CYS J 4 ? CYS J 21 ? CYS J 5 ? 1_555 CYS J 22 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 5 ? AA5 ? 5 ? AA6 ? 5 ? AA7 ? 4 ? AA8 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA5 4 5 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA6 4 5 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA8 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 2 ? ASN A 3 ? SER A 3 ASN A 4 AA1 2 SER C 2 ? ASN C 3 ? SER C 3 ASN C 4 AA1 3 SER E 2 ? ASN E 3 ? SER E 3 ASN E 4 AA1 4 SER G 2 ? ASN G 3 ? SER G 3 ASN G 4 AA1 5 SER I 2 ? ASN I 3 ? SER I 3 ASN I 4 AA2 1 LEU A 19 ? ILE A 20 ? LEU A 20 ILE A 21 AA2 2 LEU C 19 ? PHE C 22 ? LEU C 20 PHE C 23 AA2 3 LEU E 19 ? PHE E 22 ? LEU E 20 PHE E 23 AA2 4 LEU G 19 ? PHE G 22 ? LEU G 20 PHE G 23 AA2 5 LEU I 19 ? PHE I 22 ? LEU I 20 PHE I 23 AA3 1 PHE A 25 ? LEU A 26 ? PHE A 26 LEU A 27 AA3 2 PHE C 25 ? LEU C 26 ? PHE C 26 LEU C 27 AA3 3 PHE E 25 ? LEU E 26 ? PHE E 26 LEU E 27 AA3 4 PHE G 25 ? LEU G 26 ? PHE G 26 LEU G 27 AA3 5 PHE I 25 ? LEU I 26 ? PHE I 26 LEU I 27 AA4 1 SER B 2 ? ASN B 3 ? SER B 3 ASN B 4 AA4 2 SER D 2 ? ASN D 3 ? SER D 3 ASN D 4 AA4 3 SER F 2 ? ASN F 3 ? SER F 3 ASN F 4 AA4 4 SER H 2 ? ASN H 3 ? SER H 3 ASN H 4 AA4 5 SER J 2 ? ASN J 3 ? SER J 3 ASN J 4 AA5 1 LEU B 19 ? ILE B 20 ? LEU B 20 ILE B 21 AA5 2 LEU D 19 ? PHE D 22 ? LEU D 20 PHE D 23 AA5 3 LEU F 19 ? PHE F 22 ? LEU F 20 PHE F 23 AA5 4 LEU H 19 ? PHE H 22 ? LEU H 20 PHE H 23 AA5 5 LEU J 19 ? PHE J 22 ? LEU J 20 PHE J 23 AA6 1 PHE B 25 ? LEU B 26 ? PHE B 26 LEU B 27 AA6 2 PHE D 25 ? LEU D 26 ? PHE D 26 LEU D 27 AA6 3 PHE F 25 ? LEU F 26 ? PHE F 26 LEU F 27 AA6 4 PHE H 25 ? LEU H 26 ? PHE H 26 LEU H 27 AA6 5 PHE J 25 ? LEU J 26 ? PHE J 26 LEU J 27 AA7 1 GLU C 11 ? LYS C 13 ? GLU C 12 LYS C 14 AA7 2 GLU E 11 ? LYS E 13 ? GLU E 12 LYS E 14 AA7 3 GLU G 11 ? LYS G 13 ? GLU G 12 LYS G 14 AA7 4 GLU I 11 ? LYS I 13 ? GLU I 12 LYS I 14 AA8 1 GLU D 11 ? LYS D 13 ? GLU D 12 LYS D 14 AA8 2 GLU F 11 ? LYS F 13 ? GLU F 12 LYS F 14 AA8 3 GLU H 11 ? LYS H 13 ? GLU H 12 LYS H 14 AA8 4 GLU J 11 ? LYS J 13 ? GLU J 12 LYS J 14 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASN A 3 ? N ASN A 4 O SER C 2 ? O SER C 3 AA1 2 3 N ASN C 3 ? N ASN C 4 O SER E 2 ? O SER E 3 AA1 3 4 N ASN E 3 ? N ASN E 4 O SER G 2 ? O SER G 3 AA1 4 5 N ASN G 3 ? N ASN G 4 O SER I 2 ? O SER I 3 AA2 1 2 N LEU A 19 ? N LEU A 20 O ILE C 20 ? O ILE C 21 AA2 2 3 N CYS C 21 ? N CYS C 22 O ILE E 20 ? O ILE E 21 AA2 3 4 N CYS E 21 ? N CYS E 22 O ILE G 20 ? O ILE G 21 AA2 4 5 N CYS G 21 ? N CYS G 22 O ILE I 20 ? O ILE I 21 AA3 1 2 N PHE A 25 ? N PHE A 26 O LEU C 26 ? O LEU C 27 AA3 2 3 N PHE C 25 ? N PHE C 26 O LEU E 26 ? O LEU E 27 AA3 3 4 N PHE E 25 ? N PHE E 26 O LEU G 26 ? O LEU G 27 AA3 4 5 N PHE G 25 ? N PHE G 26 O LEU I 26 ? O LEU I 27 AA4 1 2 N ASN B 3 ? N ASN B 4 O SER D 2 ? O SER D 3 AA4 2 3 N ASN D 3 ? N ASN D 4 O SER F 2 ? O SER F 3 AA4 3 4 N ASN F 3 ? N ASN F 4 O SER H 2 ? O SER H 3 AA4 4 5 N ASN H 3 ? N ASN H 4 O SER J 2 ? O SER J 3 AA5 1 2 N LEU B 19 ? N LEU B 20 O ILE D 20 ? O ILE D 21 AA5 2 3 N CYS D 21 ? N CYS D 22 O ILE F 20 ? O ILE F 21 AA5 3 4 N CYS F 21 ? N CYS F 22 O ILE H 20 ? O ILE H 21 AA5 4 5 N CYS H 21 ? N CYS H 22 O ILE J 20 ? O ILE J 21 AA6 1 2 N PHE B 25 ? N PHE B 26 O LEU D 26 ? O LEU D 27 AA6 2 3 N PHE D 25 ? N PHE D 26 O LEU F 26 ? O LEU F 27 AA6 3 4 N PHE F 25 ? N PHE F 26 O LEU H 26 ? O LEU H 27 AA6 4 5 N PHE H 25 ? N PHE H 26 O LEU J 26 ? O LEU J 27 AA7 1 2 N ASN C 12 ? N ASN C 13 O LYS E 13 ? O LYS E 14 AA7 2 3 N ASN E 12 ? N ASN E 13 O LYS G 13 ? O LYS G 14 AA7 3 4 N ASN G 12 ? N ASN G 13 O LYS I 13 ? O LYS I 14 AA8 1 2 N ASN D 12 ? N ASN D 13 O LYS F 13 ? O LYS F 14 AA8 2 3 N ASN F 12 ? N ASN F 13 O LYS H 13 ? O LYS H 14 AA8 3 4 N ASN H 12 ? N ASN H 13 O LYS J 13 ? O LYS J 14 # _pdbx_entry_details.entry_id 9OID _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? -160.03 116.66 2 1 SER B 3 ? ? -160.01 116.69 3 1 SER I 3 ? ? -160.00 116.62 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9OID _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9OID _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 49626 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type TISSUE _em_entity_assembly.name 'ADan amyloid filament' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9OID _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9OID _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9OID _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 CYS N N N N 58 CYS CA C N R 59 CYS C C N N 60 CYS O O N N 61 CYS CB C N N 62 CYS SG S N N 63 CYS OXT O N N 64 CYS H H N N 65 CYS H2 H N N 66 CYS HA H N N 67 CYS HB2 H N N 68 CYS HB3 H N N 69 CYS HG H N N 70 CYS HXT H N N 71 GLN N N N N 72 GLN CA C N S 73 GLN C C N N 74 GLN O O N N 75 GLN CB C N N 76 GLN CG C N N 77 GLN CD C N N 78 GLN OE1 O N N 79 GLN NE2 N N N 80 GLN OXT O N N 81 GLN H H N N 82 GLN H2 H N N 83 GLN HA H N N 84 GLN HB2 H N N 85 GLN HB3 H N N 86 GLN HG2 H N N 87 GLN HG3 H N N 88 GLN HE21 H N N 89 GLN HE22 H N N 90 GLN HXT H N N 91 GLU N N N N 92 GLU CA C N S 93 GLU C C N N 94 GLU O O N N 95 GLU CB C N N 96 GLU CG C N N 97 GLU CD C N N 98 GLU OE1 O N N 99 GLU OE2 O N N 100 GLU OXT O N N 101 GLU H H N N 102 GLU H2 H N N 103 GLU HA H N N 104 GLU HB2 H N N 105 GLU HB3 H N N 106 GLU HG2 H N N 107 GLU HG3 H N N 108 GLU HE2 H N N 109 GLU HXT H N N 110 HIS N N N N 111 HIS CA C N S 112 HIS C C N N 113 HIS O O N N 114 HIS CB C N N 115 HIS CG C Y N 116 HIS ND1 N Y N 117 HIS CD2 C Y N 118 HIS CE1 C Y N 119 HIS NE2 N Y N 120 HIS OXT O N N 121 HIS H H N N 122 HIS H2 H N N 123 HIS HA H N N 124 HIS HB2 H N N 125 HIS HB3 H N N 126 HIS HD1 H N N 127 HIS HD2 H N N 128 HIS HE1 H N N 129 HIS HE2 H N N 130 HIS HXT H N N 131 ILE N N N N 132 ILE CA C N S 133 ILE C C N N 134 ILE O O N N 135 ILE CB C N S 136 ILE CG1 C N N 137 ILE CG2 C N N 138 ILE CD1 C N N 139 ILE OXT O N N 140 ILE H H N N 141 ILE H2 H N N 142 ILE HA H N N 143 ILE HB H N N 144 ILE HG12 H N N 145 ILE HG13 H N N 146 ILE HG21 H N N 147 ILE HG22 H N N 148 ILE HG23 H N N 149 ILE HD11 H N N 150 ILE HD12 H N N 151 ILE HD13 H N N 152 ILE HXT H N N 153 LEU N N N N 154 LEU CA C N S 155 LEU C C N N 156 LEU O O N N 157 LEU CB C N N 158 LEU CG C N N 159 LEU CD1 C N N 160 LEU CD2 C N N 161 LEU OXT O N N 162 LEU H H N N 163 LEU H2 H N N 164 LEU HA H N N 165 LEU HB2 H N N 166 LEU HB3 H N N 167 LEU HG H N N 168 LEU HD11 H N N 169 LEU HD12 H N N 170 LEU HD13 H N N 171 LEU HD21 H N N 172 LEU HD22 H N N 173 LEU HD23 H N N 174 LEU HXT H N N 175 LYS N N N N 176 LYS CA C N S 177 LYS C C N N 178 LYS O O N N 179 LYS CB C N N 180 LYS CG C N N 181 LYS CD C N N 182 LYS CE C N N 183 LYS NZ N N N 184 LYS OXT O N N 185 LYS H H N N 186 LYS H2 H N N 187 LYS HA H N N 188 LYS HB2 H N N 189 LYS HB3 H N N 190 LYS HG2 H N N 191 LYS HG3 H N N 192 LYS HD2 H N N 193 LYS HD3 H N N 194 LYS HE2 H N N 195 LYS HE3 H N N 196 LYS HZ1 H N N 197 LYS HZ2 H N N 198 LYS HZ3 H N N 199 LYS HXT H N N 200 PHE N N N N 201 PHE CA C N S 202 PHE C C N N 203 PHE O O N N 204 PHE CB C N N 205 PHE CG C Y N 206 PHE CD1 C Y N 207 PHE CD2 C Y N 208 PHE CE1 C Y N 209 PHE CE2 C Y N 210 PHE CZ C Y N 211 PHE OXT O N N 212 PHE H H N N 213 PHE H2 H N N 214 PHE HA H N N 215 PHE HB2 H N N 216 PHE HB3 H N N 217 PHE HD1 H N N 218 PHE HD2 H N N 219 PHE HE1 H N N 220 PHE HE2 H N N 221 PHE HZ H N N 222 PHE HXT H N N 223 SER N N N N 224 SER CA C N S 225 SER C C N N 226 SER O O N N 227 SER CB C N N 228 SER OG O N N 229 SER OXT O N N 230 SER H H N N 231 SER H2 H N N 232 SER HA H N N 233 SER HB2 H N N 234 SER HB3 H N N 235 SER HG H N N 236 SER HXT H N N 237 THR N N N N 238 THR CA C N S 239 THR C C N N 240 THR O O N N 241 THR CB C N R 242 THR OG1 O N N 243 THR CG2 C N N 244 THR OXT O N N 245 THR H H N N 246 THR H2 H N N 247 THR HA H N N 248 THR HB H N N 249 THR HG1 H N N 250 THR HG21 H N N 251 THR HG22 H N N 252 THR HG23 H N N 253 THR HXT H N N 254 VAL N N N N 255 VAL CA C N S 256 VAL C C N N 257 VAL O O N N 258 VAL CB C N N 259 VAL CG1 C N N 260 VAL CG2 C N N 261 VAL OXT O N N 262 VAL H H N N 263 VAL H2 H N N 264 VAL HA H N N 265 VAL HB H N N 266 VAL HG11 H N N 267 VAL HG12 H N N 268 VAL HG13 H N N 269 VAL HG21 H N N 270 VAL HG22 H N N 271 VAL HG23 H N N 272 VAL HXT H N N 273 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 CYS N CA sing N N 55 CYS N H sing N N 56 CYS N H2 sing N N 57 CYS CA C sing N N 58 CYS CA CB sing N N 59 CYS CA HA sing N N 60 CYS C O doub N N 61 CYS C OXT sing N N 62 CYS CB SG sing N N 63 CYS CB HB2 sing N N 64 CYS CB HB3 sing N N 65 CYS SG HG sing N N 66 CYS OXT HXT sing N N 67 GLN N CA sing N N 68 GLN N H sing N N 69 GLN N H2 sing N N 70 GLN CA C sing N N 71 GLN CA CB sing N N 72 GLN CA HA sing N N 73 GLN C O doub N N 74 GLN C OXT sing N N 75 GLN CB CG sing N N 76 GLN CB HB2 sing N N 77 GLN CB HB3 sing N N 78 GLN CG CD sing N N 79 GLN CG HG2 sing N N 80 GLN CG HG3 sing N N 81 GLN CD OE1 doub N N 82 GLN CD NE2 sing N N 83 GLN NE2 HE21 sing N N 84 GLN NE2 HE22 sing N N 85 GLN OXT HXT sing N N 86 GLU N CA sing N N 87 GLU N H sing N N 88 GLU N H2 sing N N 89 GLU CA C sing N N 90 GLU CA CB sing N N 91 GLU CA HA sing N N 92 GLU C O doub N N 93 GLU C OXT sing N N 94 GLU CB CG sing N N 95 GLU CB HB2 sing N N 96 GLU CB HB3 sing N N 97 GLU CG CD sing N N 98 GLU CG HG2 sing N N 99 GLU CG HG3 sing N N 100 GLU CD OE1 doub N N 101 GLU CD OE2 sing N N 102 GLU OE2 HE2 sing N N 103 GLU OXT HXT sing N N 104 HIS N CA sing N N 105 HIS N H sing N N 106 HIS N H2 sing N N 107 HIS CA C sing N N 108 HIS CA CB sing N N 109 HIS CA HA sing N N 110 HIS C O doub N N 111 HIS C OXT sing N N 112 HIS CB CG sing N N 113 HIS CB HB2 sing N N 114 HIS CB HB3 sing N N 115 HIS CG ND1 sing Y N 116 HIS CG CD2 doub Y N 117 HIS ND1 CE1 doub Y N 118 HIS ND1 HD1 sing N N 119 HIS CD2 NE2 sing Y N 120 HIS CD2 HD2 sing N N 121 HIS CE1 NE2 sing Y N 122 HIS CE1 HE1 sing N N 123 HIS NE2 HE2 sing N N 124 HIS OXT HXT sing N N 125 ILE N CA sing N N 126 ILE N H sing N N 127 ILE N H2 sing N N 128 ILE CA C sing N N 129 ILE CA CB sing N N 130 ILE CA HA sing N N 131 ILE C O doub N N 132 ILE C OXT sing N N 133 ILE CB CG1 sing N N 134 ILE CB CG2 sing N N 135 ILE CB HB sing N N 136 ILE CG1 CD1 sing N N 137 ILE CG1 HG12 sing N N 138 ILE CG1 HG13 sing N N 139 ILE CG2 HG21 sing N N 140 ILE CG2 HG22 sing N N 141 ILE CG2 HG23 sing N N 142 ILE CD1 HD11 sing N N 143 ILE CD1 HD12 sing N N 144 ILE CD1 HD13 sing N N 145 ILE OXT HXT sing N N 146 LEU N CA sing N N 147 LEU N H sing N N 148 LEU N H2 sing N N 149 LEU CA C sing N N 150 LEU CA CB sing N N 151 LEU CA HA sing N N 152 LEU C O doub N N 153 LEU C OXT sing N N 154 LEU CB CG sing N N 155 LEU CB HB2 sing N N 156 LEU CB HB3 sing N N 157 LEU CG CD1 sing N N 158 LEU CG CD2 sing N N 159 LEU CG HG sing N N 160 LEU CD1 HD11 sing N N 161 LEU CD1 HD12 sing N N 162 LEU CD1 HD13 sing N N 163 LEU CD2 HD21 sing N N 164 LEU CD2 HD22 sing N N 165 LEU CD2 HD23 sing N N 166 LEU OXT HXT sing N N 167 LYS N CA sing N N 168 LYS N H sing N N 169 LYS N H2 sing N N 170 LYS CA C sing N N 171 LYS CA CB sing N N 172 LYS CA HA sing N N 173 LYS C O doub N N 174 LYS C OXT sing N N 175 LYS CB CG sing N N 176 LYS CB HB2 sing N N 177 LYS CB HB3 sing N N 178 LYS CG CD sing N N 179 LYS CG HG2 sing N N 180 LYS CG HG3 sing N N 181 LYS CD CE sing N N 182 LYS CD HD2 sing N N 183 LYS CD HD3 sing N N 184 LYS CE NZ sing N N 185 LYS CE HE2 sing N N 186 LYS CE HE3 sing N N 187 LYS NZ HZ1 sing N N 188 LYS NZ HZ2 sing N N 189 LYS NZ HZ3 sing N N 190 LYS OXT HXT sing N N 191 PHE N CA sing N N 192 PHE N H sing N N 193 PHE N H2 sing N N 194 PHE CA C sing N N 195 PHE CA CB sing N N 196 PHE CA HA sing N N 197 PHE C O doub N N 198 PHE C OXT sing N N 199 PHE CB CG sing N N 200 PHE CB HB2 sing N N 201 PHE CB HB3 sing N N 202 PHE CG CD1 doub Y N 203 PHE CG CD2 sing Y N 204 PHE CD1 CE1 sing Y N 205 PHE CD1 HD1 sing N N 206 PHE CD2 CE2 doub Y N 207 PHE CD2 HD2 sing N N 208 PHE CE1 CZ doub Y N 209 PHE CE1 HE1 sing N N 210 PHE CE2 CZ sing Y N 211 PHE CE2 HE2 sing N N 212 PHE CZ HZ sing N N 213 PHE OXT HXT sing N N 214 SER N CA sing N N 215 SER N H sing N N 216 SER N H2 sing N N 217 SER CA C sing N N 218 SER CA CB sing N N 219 SER CA HA sing N N 220 SER C O doub N N 221 SER C OXT sing N N 222 SER CB OG sing N N 223 SER CB HB2 sing N N 224 SER CB HB3 sing N N 225 SER OG HG sing N N 226 SER OXT HXT sing N N 227 THR N CA sing N N 228 THR N H sing N N 229 THR N H2 sing N N 230 THR CA C sing N N 231 THR CA CB sing N N 232 THR CA HA sing N N 233 THR C O doub N N 234 THR C OXT sing N N 235 THR CB OG1 sing N N 236 THR CB CG2 sing N N 237 THR CB HB sing N N 238 THR OG1 HG1 sing N N 239 THR CG2 HG21 sing N N 240 THR CG2 HG22 sing N N 241 THR CG2 HG23 sing N N 242 THR OXT HXT sing N N 243 VAL N CA sing N N 244 VAL N H sing N N 245 VAL N H2 sing N N 246 VAL CA C sing N N 247 VAL CA CB sing N N 248 VAL CA HA sing N N 249 VAL C O doub N N 250 VAL C OXT sing N N 251 VAL CB CG1 sing N N 252 VAL CB CG2 sing N N 253 VAL CB HB sing N N 254 VAL CG1 HG11 sing N N 255 VAL CG1 HG12 sing N N 256 VAL CG1 HG13 sing N N 257 VAL CG2 HG21 sing N N 258 VAL CG2 HG22 sing N N 259 VAL CG2 HG23 sing N N 260 VAL OXT HXT sing N N 261 # _em_admin.current_status REL _em_admin.deposition_date 2025-05-06 _em_admin.deposition_site RCSB _em_admin.entry_id 9OID _em_admin.last_update 2026-05-27 _em_admin.map_release_date 2026-05-27 _em_admin.title 'Structure of ADan amyloid filaments from synthesized ADan peptide' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C2 _em_helical_entity.angular_rotation_per_subunit -1.97 _em_helical_entity.axial_rise_per_subunit 4.76 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' ? 1 'National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)' 'United States' ? 2 # _atom_sites.entry_id 9OID _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #