HEADER IMMUNE SYSTEM 09-MAY-25 9OK8 TITLE CRYO-EM STRUCTURE OF A HUMAN INNATE IMMUNE RECEPTOR CONFORMATION 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ANGIOTENSIN II/VASOPRESSIN RECEPTOR,PYRIN-CONTAINING APAF1- COMPND 5 LIKE PROTEIN 5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NLRP6, NALP6, PYPAF5; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS MONOMER, RECEPTOR, CELL DEATH, ENZYME, IMMUNE SYSTEM EXPDTA ELECTRON MICROSCOPY AUTHOR Z.CUI,C.SHEN REVDAT 1 12-AUG-26 9OK8 0 JRNL AUTH Z.CUI,C.SHEN JRNL TITL CRYO-EM STRUCTURE OF A HUMAN INNATE IMMUNE RECEPTOR AT 3.7 JRNL TITL 2 ANGSTROMS RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.690 REMARK 3 NUMBER OF PARTICLES : 153064 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9OK8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1000295767. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : STRUCTURE OF A HUMAN INNATE REMARK 245 IMMUNE RECEPTOR REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 600.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4844.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLN A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 CYS A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 PRO A 13 REMARK 465 ARG A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 VAL A 17 REMARK 465 ALA A 18 REMARK 465 ARG A 19 REMARK 465 GLU A 20 REMARK 465 LEU A 21 REMARK 465 LEU A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 LEU A 26 REMARK 465 GLU A 27 REMARK 465 GLU A 28 REMARK 465 LEU A 29 REMARK 465 SER A 30 REMARK 465 GLN A 31 REMARK 465 GLU A 32 REMARK 465 GLN A 33 REMARK 465 LEU A 34 REMARK 465 LYS A 35 REMARK 465 ARG A 36 REMARK 465 PHE A 37 REMARK 465 ARG A 38 REMARK 465 HIS A 39 REMARK 465 LYS A 40 REMARK 465 LEU A 41 REMARK 465 ARG A 42 REMARK 465 ASP A 43 REMARK 465 VAL A 44 REMARK 465 GLY A 45 REMARK 465 PRO A 46 REMARK 465 ASP A 47 REMARK 465 GLY A 48 REMARK 465 ARG A 49 REMARK 465 SER A 50 REMARK 465 ILE A 51 REMARK 465 PRO A 52 REMARK 465 TRP A 53 REMARK 465 GLY A 54 REMARK 465 ARG A 55 REMARK 465 LEU A 56 REMARK 465 GLU A 57 REMARK 465 ARG A 58 REMARK 465 ALA A 59 REMARK 465 ASP A 60 REMARK 465 ALA A 61 REMARK 465 VAL A 62 REMARK 465 ASP A 63 REMARK 465 LEU A 64 REMARK 465 ALA A 65 REMARK 465 GLU A 66 REMARK 465 GLN A 67 REMARK 465 LEU A 68 REMARK 465 ALA A 69 REMARK 465 GLN A 70 REMARK 465 PHE A 71 REMARK 465 TYR A 72 REMARK 465 GLY A 73 REMARK 465 PRO A 74 REMARK 465 GLU A 75 REMARK 465 PRO A 76 REMARK 465 ALA A 77 REMARK 465 LEU A 78 REMARK 465 GLU A 79 REMARK 465 VAL A 80 REMARK 465 ALA A 81 REMARK 465 ARG A 82 REMARK 465 LYS A 83 REMARK 465 THR A 84 REMARK 465 LEU A 85 REMARK 465 LYS A 86 REMARK 465 ARG A 87 REMARK 465 ALA A 88 REMARK 465 ASP A 89 REMARK 465 ALA A 90 REMARK 465 ARG A 91 REMARK 465 ASP A 92 REMARK 465 VAL A 93 REMARK 465 ALA A 94 REMARK 465 ALA A 95 REMARK 465 GLN A 96 REMARK 465 LEU A 97 REMARK 465 GLN A 98 REMARK 465 GLU A 99 REMARK 465 ARG A 100 REMARK 465 ARG A 101 REMARK 465 LEU A 102 REMARK 465 GLN A 103 REMARK 465 ARG A 104 REMARK 465 LEU A 105 REMARK 465 GLY A 106 REMARK 465 LEU A 107 REMARK 465 GLY A 108 REMARK 465 SER A 109 REMARK 465 GLY A 110 REMARK 465 THR A 111 REMARK 465 LEU A 112 REMARK 465 LEU A 113 REMARK 465 SER A 114 REMARK 465 VAL A 115 REMARK 465 SER A 116 REMARK 465 GLU A 117 REMARK 465 VAL A 133 REMARK 465 LYS A 134 REMARK 465 GLU A 135 REMARK 465 ARG A 136 REMARK 465 ASN A 137 REMARK 465 ALA A 138 REMARK 465 ARG A 139 REMARK 465 SER A 140 REMARK 465 VAL A 141 REMARK 465 LYS A 142 REMARK 465 ILE A 143 REMARK 465 THR A 144 REMARK 465 LYS A 145 REMARK 465 ARG A 146 REMARK 465 PHE A 147 REMARK 465 THR A 148 REMARK 465 LYS A 149 REMARK 465 GLU A 155 REMARK 465 SER A 156 REMARK 465 ALA A 157 REMARK 465 ALA A 158 REMARK 465 PRO A 159 REMARK 465 GLU A 160 REMARK 465 GLU A 161 REMARK 465 ALA A 162 REMARK 465 MET A 163 REMARK 465 GLY A 164 REMARK 465 PRO A 165 REMARK 465 ALA A 166 REMARK 465 GLU A 167 REMARK 465 GLU A 168 REMARK 465 PRO A 169 REMARK 465 GLU A 170 REMARK 465 PRO A 171 REMARK 465 GLY A 172 REMARK 465 ARG A 173 REMARK 465 ALA A 174 REMARK 465 ARG A 175 REMARK 465 ARG A 176 REMARK 465 SER A 177 REMARK 465 ASP A 189 REMARK 465 GLU A 190 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 ARG A 193 REMARK 465 ARG A 194 REMARK 465 PRO A 195 REMARK 465 GLY A 202 REMARK 465 PRO A 203 REMARK 465 ALA A 204 REMARK 465 GLY A 205 REMARK 465 ILE A 206 REMARK 465 LEU A 224 REMARK 465 TYR A 225 REMARK 465 GLN A 226 REMARK 465 GLY A 227 REMARK 465 GLN A 228 REMARK 465 VAL A 229 REMARK 465 ASP A 230 REMARK 465 GLY A 238 REMARK 465 GLU A 239 REMARK 465 LEU A 240 REMARK 465 LEU A 241 REMARK 465 PRO A 265 REMARK 465 GLN A 266 REMARK 465 MET A 267 REMARK 465 LEU A 268 REMARK 465 ALA A 269 REMARK 465 GLN A 270 REMARK 465 PRO A 271 REMARK 465 GLN A 272 REMARK 465 ARG A 273 REMARK 465 LEU A 274 REMARK 465 LEU A 275 REMARK 465 ALA A 281 REMARK 465 ASP A 282 REMARK 465 GLU A 283 REMARK 465 LEU A 284 REMARK 465 PRO A 285 REMARK 465 ALA A 286 REMARK 465 LEU A 287 REMARK 465 GLY A 288 REMARK 465 GLY A 289 REMARK 465 PRO A 290 REMARK 465 GLU A 291 REMARK 465 ALA A 292 REMARK 465 ALA A 293 REMARK 465 PRO A 294 REMARK 465 CYS A 295 REMARK 465 THR A 296 REMARK 465 ASP A 297 REMARK 465 PRO A 298 REMARK 465 PHE A 299 REMARK 465 GLU A 300 REMARK 465 ALA A 301 REMARK 465 ALA A 302 REMARK 465 SER A 303 REMARK 465 SER A 313 REMARK 465 LYS A 314 REMARK 465 ALA A 315 REMARK 465 LEU A 316 REMARK 465 LEU A 317 REMARK 465 PRO A 318 REMARK 465 THR A 319 REMARK 465 ALA A 320 REMARK 465 LEU A 321 REMARK 465 ARG A 337 REMARK 465 LEU A 338 REMARK 465 CYS A 339 REMARK 465 SER A 340 REMARK 465 PRO A 341 REMARK 465 GLN A 342 REMARK 465 PRO A 486 REMARK 465 GLY A 487 REMARK 465 VAL A 488 REMARK 465 LEU A 489 REMARK 465 GLU A 490 REMARK 465 THR A 491 REMARK 465 VAL A 518 REMARK 465 PRO A 519 REMARK 465 ARG A 520 REMARK 465 THR A 521 REMARK 465 ALA A 522 REMARK 465 PRO A 587 REMARK 465 GLY A 588 REMARK 465 VAL A 589 REMARK 465 ALA A 590 REMARK 465 PRO A 591 REMARK 465 GLU A 592 REMARK 465 VAL A 593 REMARK 465 THR A 594 REMARK 465 GLU A 595 REMARK 465 GLY A 596 REMARK 465 ALA A 597 REMARK 465 LYS A 598 REMARK 465 GLY A 599 REMARK 465 LEU A 600 REMARK 465 GLU A 601 REMARK 465 ASP A 602 REMARK 465 THR A 603 REMARK 465 GLU A 604 REMARK 465 GLU A 605 REMARK 465 PRO A 606 REMARK 465 GLU A 607 REMARK 465 GLU A 608 REMARK 465 VAL A 680 REMARK 465 ALA A 681 REMARK 465 ALA A 682 REMARK 465 GLN A 683 REMARK 465 GLU A 684 REMARK 465 LYS A 685 REMARK 465 LYS A 686 REMARK 465 LYS A 687 REMARK 465 LYS A 688 REMARK 465 SER A 689 REMARK 465 LEU A 690 REMARK 465 GLY A 691 REMARK 465 LYS A 692 REMARK 465 ARG A 693 REMARK 465 LEU A 694 REMARK 465 GLN A 695 REMARK 465 ALA A 696 REMARK 465 SER A 697 REMARK 465 LEU A 698 REMARK 465 GLY A 699 REMARK 465 GLY A 700 REMARK 465 GLY A 701 REMARK 465 SER A 702 REMARK 465 SER A 703 REMARK 465 SER A 704 REMARK 465 GLN A 705 REMARK 465 GLY A 706 REMARK 465 THR A 707 REMARK 465 THR A 708 REMARK 465 LYS A 709 REMARK 465 GLN A 710 REMARK 465 LEU A 711 REMARK 465 LEU A 878 REMARK 465 ASP A 879 REMARK 465 GLY A 880 REMARK 465 HIS A 881 REMARK 465 PRO A 882 REMARK 465 GLN A 883 REMARK 465 PRO A 884 REMARK 465 PRO A 885 REMARK 465 LYS A 886 REMARK 465 GLU A 887 REMARK 465 LEU A 888 REMARK 465 ILE A 889 REMARK 465 SER A 890 REMARK 465 THR A 891 REMARK 465 PHE A 892 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 746 OG SER A 749 2.13 REMARK 500 O SER A 248 N LEU A 252 2.15 REMARK 500 ND2 ASN A 378 OG1 THR A 380 2.17 REMARK 500 OE1 GLN A 582 OH TYR A 617 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 395 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 214 -3.77 72.28 REMARK 500 SER A 350 16.48 54.91 REMARK 500 LYS A 352 -12.22 72.41 REMARK 500 VAL A 387 148.54 -172.66 REMARK 500 SER A 409 -7.32 75.41 REMARK 500 THR A 414 -168.92 -79.80 REMARK 500 ALA A 430 73.99 52.87 REMARK 500 ASP A 434 -174.51 -171.08 REMARK 500 LEU A 438 -18.89 71.73 REMARK 500 ARG A 457 43.33 -141.45 REMARK 500 GLN A 500 4.43 -67.86 REMARK 500 TYR A 511 106.77 -44.75 REMARK 500 LEU A 512 -157.22 -165.04 REMARK 500 SER A 538 -169.62 -126.73 REMARK 500 VAL A 541 -51.20 -131.25 REMARK 500 PHE A 546 -68.73 -92.83 REMARK 500 LEU A 547 75.55 42.39 REMARK 500 PHE A 548 -6.84 74.93 REMARK 500 LEU A 550 167.27 72.61 REMARK 500 SER A 552 159.80 172.75 REMARK 500 ARG A 570 163.57 178.52 REMARK 500 MET A 654 -18.69 70.69 REMARK 500 LYS A 739 20.99 -140.08 REMARK 500 ALA A 743 -53.12 -120.53 REMARK 500 ALA A 754 14.99 -143.19 REMARK 500 CYS A 841 -4.04 66.82 REMARK 500 GLN A 856 -2.61 68.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 722 MET A 723 149.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 347 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9OK7 RELATED DB: PDB REMARK 900 RELATED ID: EMD-70556 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF A HUMAN INNATE IMMUNE RECEPTOR CONFORMATION 2 DBREF 9OK8 A 1 892 UNP P59044 NLRP6_HUMAN 1 892 SEQRES 1 A 892 MET ASP GLN PRO GLU ALA PRO CYS SER SER THR GLY PRO SEQRES 2 A 892 ARG LEU ALA VAL ALA ARG GLU LEU LEU LEU ALA ALA LEU SEQRES 3 A 892 GLU GLU LEU SER GLN GLU GLN LEU LYS ARG PHE ARG HIS SEQRES 4 A 892 LYS LEU ARG ASP VAL GLY PRO ASP GLY ARG SER ILE PRO SEQRES 5 A 892 TRP GLY ARG LEU GLU ARG ALA ASP ALA VAL ASP LEU ALA SEQRES 6 A 892 GLU GLN LEU ALA GLN PHE TYR GLY PRO GLU PRO ALA LEU SEQRES 7 A 892 GLU VAL ALA ARG LYS THR LEU LYS ARG ALA ASP ALA ARG SEQRES 8 A 892 ASP VAL ALA ALA GLN LEU GLN GLU ARG ARG LEU GLN ARG SEQRES 9 A 892 LEU GLY LEU GLY SER GLY THR LEU LEU SER VAL SER GLU SEQRES 10 A 892 TYR LYS LYS LYS TYR ARG GLU HIS VAL LEU GLN LEU HIS SEQRES 11 A 892 ALA ARG VAL LYS GLU ARG ASN ALA ARG SER VAL LYS ILE SEQRES 12 A 892 THR LYS ARG PHE THR LYS LEU LEU ILE ALA PRO GLU SER SEQRES 13 A 892 ALA ALA PRO GLU GLU ALA MET GLY PRO ALA GLU GLU PRO SEQRES 14 A 892 GLU PRO GLY ARG ALA ARG ARG SER ASP THR HIS THR PHE SEQRES 15 A 892 ASN ARG LEU PHE ARG ARG ASP GLU GLU GLY ARG ARG PRO SEQRES 16 A 892 LEU THR VAL VAL LEU GLN GLY PRO ALA GLY ILE GLY LYS SEQRES 17 A 892 THR MET ALA ALA LYS LYS ILE LEU TYR ASP TRP ALA ALA SEQRES 18 A 892 GLY LYS LEU TYR GLN GLY GLN VAL ASP PHE ALA PHE PHE SEQRES 19 A 892 MET PRO CYS GLY GLU LEU LEU GLU ARG PRO GLY THR ARG SEQRES 20 A 892 SER LEU ALA ASP LEU ILE LEU ASP GLN CYS PRO ASP ARG SEQRES 21 A 892 GLY ALA PRO VAL PRO GLN MET LEU ALA GLN PRO GLN ARG SEQRES 22 A 892 LEU LEU PHE ILE LEU ASP GLY ALA ASP GLU LEU PRO ALA SEQRES 23 A 892 LEU GLY GLY PRO GLU ALA ALA PRO CYS THR ASP PRO PHE SEQRES 24 A 892 GLU ALA ALA SER GLY ALA ARG VAL LEU GLY GLY LEU LEU SEQRES 25 A 892 SER LYS ALA LEU LEU PRO THR ALA LEU LEU LEU VAL THR SEQRES 26 A 892 THR ARG ALA ALA ALA PRO GLY ARG LEU GLN GLY ARG LEU SEQRES 27 A 892 CYS SER PRO GLN CYS ALA GLU VAL ARG GLY PHE SER ASP SEQRES 28 A 892 LYS ASP LYS LYS LYS TYR PHE TYR LYS TYR PHE ARG ASP SEQRES 29 A 892 GLU ARG ARG ALA GLU ARG ALA TYR ARG PHE VAL LYS GLU SEQRES 30 A 892 ASN GLU THR LEU PHE ALA LEU CYS PHE VAL PRO PHE VAL SEQRES 31 A 892 CYS TRP ILE VAL CYS THR VAL LEU ARG GLN GLN LEU GLU SEQRES 32 A 892 LEU GLY ARG ASP LEU SER ARG THR SER LYS THR THR THR SEQRES 33 A 892 SER VAL TYR LEU LEU PHE ILE THR SER VAL LEU SER SER SEQRES 34 A 892 ALA PRO VAL ALA ASP GLY PRO ARG LEU GLN GLY ASP LEU SEQRES 35 A 892 ARG ASN LEU CYS ARG LEU ALA ARG GLU GLY VAL LEU GLY SEQRES 36 A 892 ARG ARG ALA GLN PHE ALA GLU LYS GLU LEU GLU GLN LEU SEQRES 37 A 892 GLU LEU ARG GLY SER LYS VAL GLN THR LEU PHE LEU SER SEQRES 38 A 892 LYS LYS GLU LEU PRO GLY VAL LEU GLU THR GLU VAL THR SEQRES 39 A 892 TYR GLN PHE ILE ASP GLN SER PHE GLN GLU PHE LEU ALA SEQRES 40 A 892 ALA LEU SER TYR LEU LEU GLU ASP GLY GLY VAL PRO ARG SEQRES 41 A 892 THR ALA ALA GLY GLY VAL GLY THR LEU LEU ARG GLY ASP SEQRES 42 A 892 ALA GLN PRO HIS SER HIS LEU VAL LEU THR THR ARG PHE SEQRES 43 A 892 LEU PHE GLY LEU LEU SER ALA GLU ARG MET ARG ASP ILE SEQRES 44 A 892 GLU ARG HIS PHE GLY CYS MET VAL SER GLU ARG VAL LYS SEQRES 45 A 892 GLN GLU ALA LEU ARG TRP VAL GLN GLY GLN GLY GLN GLY SEQRES 46 A 892 CYS PRO GLY VAL ALA PRO GLU VAL THR GLU GLY ALA LYS SEQRES 47 A 892 GLY LEU GLU ASP THR GLU GLU PRO GLU GLU GLU GLU GLU SEQRES 48 A 892 GLY GLU GLU PRO ASN TYR PRO LEU GLU LEU LEU TYR CYS SEQRES 49 A 892 LEU TYR GLU THR GLN GLU ASP ALA PHE VAL ARG GLN ALA SEQRES 50 A 892 LEU CYS ARG PHE PRO GLU LEU ALA LEU GLN ARG VAL ARG SEQRES 51 A 892 PHE CYS ARG MET ASP VAL ALA VAL LEU SER TYR CYS VAL SEQRES 52 A 892 ARG CYS CYS PRO ALA GLY GLN ALA LEU ARG LEU ILE SER SEQRES 53 A 892 CYS ARG LEU VAL ALA ALA GLN GLU LYS LYS LYS LYS SER SEQRES 54 A 892 LEU GLY LYS ARG LEU GLN ALA SER LEU GLY GLY GLY SER SEQRES 55 A 892 SER SER GLN GLY THR THR LYS GLN LEU PRO ALA SER LEU SEQRES 56 A 892 LEU HIS PRO LEU PHE GLN ALA MET THR ASP PRO LEU CYS SEQRES 57 A 892 HIS LEU SER SER LEU THR LEU SER HIS CYS LYS LEU PRO SEQRES 58 A 892 ASP ALA VAL CYS ARG ASP LEU SER GLU ALA LEU ARG ALA SEQRES 59 A 892 ALA PRO ALA LEU THR GLU LEU GLY LEU LEU HIS ASN ARG SEQRES 60 A 892 LEU SER GLU ALA GLY LEU ARG MET LEU SER GLU GLY LEU SEQRES 61 A 892 ALA TRP PRO GLN CYS ARG VAL GLN THR VAL ARG VAL GLN SEQRES 62 A 892 LEU PRO ASP PRO GLN ARG GLY LEU GLN TYR LEU VAL GLY SEQRES 63 A 892 MET LEU ARG GLN SER PRO ALA LEU THR THR LEU ASP LEU SEQRES 64 A 892 SER GLY CYS GLN LEU PRO ALA PRO MET VAL THR TYR LEU SEQRES 65 A 892 CYS ALA VAL LEU GLN HIS GLN GLY CYS GLY LEU GLN THR SEQRES 66 A 892 LEU SER LEU ALA SER VAL GLU LEU SER GLU GLN SER LEU SEQRES 67 A 892 GLN GLU LEU GLN ALA VAL LYS ARG ALA LYS PRO ASP LEU SEQRES 68 A 892 VAL ILE THR HIS PRO ALA LEU ASP GLY HIS PRO GLN PRO SEQRES 69 A 892 PRO LYS GLU LEU ILE SER THR PHE HET ATP A 901 31 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 2 ATP C10 H16 N5 O13 P3 HELIX 1 AA1 TYR A 118 HIS A 130 1 13 HELIX 2 AA2 HIS A 180 PHE A 186 1 7 HELIX 3 AA3 THR A 209 LYS A 213 5 5 HELIX 4 AA4 SER A 248 LEU A 254 1 7 HELIX 5 AA5 ALA A 305 LEU A 311 1 7 HELIX 6 AA6 LYS A 352 PHE A 362 1 11 HELIX 7 AA7 GLU A 365 GLU A 377 1 13 HELIX 8 AA8 ASN A 378 ALA A 383 1 6 HELIX 9 AA9 VAL A 387 LEU A 404 1 18 HELIX 10 AB1 THR A 414 ALA A 430 1 17 HELIX 11 AB2 LEU A 438 LEU A 454 1 17 HELIX 12 AB3 ALA A 461 GLN A 467 1 7 HELIX 13 AB4 SER A 473 LEU A 480 1 8 HELIX 14 AB5 ASP A 499 TYR A 511 1 13 HELIX 15 AB6 LEU A 512 GLY A 516 5 5 HELIX 16 AB7 GLY A 524 GLN A 535 1 12 HELIX 17 AB8 PHE A 546 LEU A 550 5 5 HELIX 18 AB9 MET A 556 PHE A 563 1 8 HELIX 19 AC1 VAL A 571 GLN A 580 1 10 HELIX 20 AC2 ASN A 616 GLU A 627 1 12 HELIX 21 AC3 GLU A 630 CYS A 639 1 10 HELIX 22 AC4 MET A 654 CYS A 665 1 12 HELIX 23 AC5 VAL A 744 ARG A 753 1 10 HELIX 24 AC6 GLY A 772 ALA A 781 1 10 HELIX 25 AC7 ARG A 799 ARG A 809 1 11 HELIX 26 AC8 PRO A 825 GLN A 839 1 15 HELIX 27 AC9 GLN A 859 LYS A 868 1 10 SHEET 1 AA1 4 ALA A 671 LEU A 674 0 SHEET 2 AA1 4 SER A 732 LEU A 735 1 O SER A 732 N LEU A 672 SHEET 3 AA1 4 GLU A 760 LEU A 763 1 O GLU A 760 N LEU A 733 SHEET 4 AA1 4 THR A 789 VAL A 790 1 O THR A 789 N LEU A 761 SHEET 1 AA2 2 THR A 845 LEU A 846 0 SHEET 2 AA2 2 VAL A 872 ILE A 873 1 O VAL A 872 N LEU A 846 SSBOND 1 CYS A 391 CYS A 395 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 1316 1351 CONECT 1351 1316 CONECT 4607 4608 4609 4610 4614 CONECT 4608 4607 CONECT 4609 4607 CONECT 4610 4607 CONECT 4611 4612 4613 4614 4618 CONECT 4612 4611 CONECT 4613 4611 CONECT 4614 4607 4611 CONECT 4615 4616 4617 4618 4619 CONECT 4616 4615 CONECT 4617 4615 CONECT 4618 4611 4615 CONECT 4619 4615 4620 CONECT 4620 4619 4621 CONECT 4621 4620 4622 4623 CONECT 4622 4621 4627 CONECT 4623 4621 4624 4625 CONECT 4624 4623 CONECT 4625 4623 4626 4627 CONECT 4626 4625 CONECT 4627 4622 4625 4628 CONECT 4628 4627 4629 4637 CONECT 4629 4628 4630 CONECT 4630 4629 4631 CONECT 4631 4630 4632 4637 CONECT 4632 4631 4633 4634 CONECT 4633 4632 CONECT 4634 4632 4635 CONECT 4635 4634 4636 CONECT 4636 4635 4637 CONECT 4637 4628 4631 4636 MASTER 520 0 1 27 6 0 0 6 4631 1 33 69 END