data_9OL3 # _entry.id 9OL3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.407 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9OL3 pdb_00009ol3 10.2210/pdb9ol3/pdb WWPDB D_1000295542 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-10-22 ? 2 'Structure model' 1 1 2025-11-19 ? 3 'Structure model' 1 2 2025-11-26 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' diffrn_detector 2 3 'Structure model' citation 3 3 'Structure model' citation_author # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_detector.type' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9OL3 _pdbx_database_status.recvd_initial_deposition_date 2025-05-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_contact_author.id 2 _pdbx_contact_author.email jwszostak@uchicago.edu _pdbx_contact_author.name_first Jack _pdbx_contact_author.name_last Szostak _pdbx_contact_author.name_mi W _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4131-1203 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fang, Z.' 1 0000-0001-8679-6633 'Szostak, J.W.' 2 0000-0003-4131-1203 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Nucleic Acids Res.' NARHAD 0389 1362-4962 ? ? 53 ? ? ? ;Impact of 2'-deoxyribo-purine substrates on nonenzymatic RNA template-directed primer extension. ; 2025 ? 10.1093/nar/gkaf1228 41261857 ? ? ? ? ? ? ? ? ? US ? ? 1 Biorxiv ? ? 2692-8205 ? ? ? ? ? ? ;Impact of 2'-deoxyribo-purine substrates on nonenzymatic RNA template-directed primer extension. ; 2025 ? 10.1101/2025.08.29.673048 40909494 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fang, Z.' 1 0000-0001-8679-6633 primary 'Acikgoz, O.' 2 ? primary 'Jia, X.' 3 0000-0001-9094-9882 primary 'Essex, J.' 4 ? primary 'Wen, R.' 5 ? primary 'Szostak, J.W.' 6 0000-0003-4131-1203 1 'Fang, Z.' 7 0000-0001-8679-6633 1 'Acikgoz, O.' 8 0009-0001-3296-1637 1 'Jia, X.' 9 0000-0001-9094-9882 1 'Essex, J.' 10 0009-0003-6281-4798 1 'Wen, R.' 11 ? 1 'Szostak, J.W.' 12 0000-0003-4131-1203 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') ; 4432.824 2 ? ? ? ? 2 non-polymer syn ;2-amino-1-[(R)-{[(2R,3S,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-3-[(S)-{[(2R,3S,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-1H-imidazol-3-ium (non-preferred name) ; 742.512 2 ? ? ? ? 3 non-polymer nat 'MAGNESIUM ION' 24.305 7 ? ? ? ? 4 water nat water 18.015 130 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(LKC)(LCC)(LCC)(LCG)ACUUAAGUCG' _entity_poly.pdbx_seq_one_letter_code_can NNNGACUUAAGUCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;2-amino-1-[(R)-{[(2R,3S,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-3-[(S)-{[(2R,3S,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-1H-imidazol-3-ium (non-preferred name) ; A1CGJ 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LKC n 1 2 LCC n 1 3 LCC n 1 4 LCG n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A1CGJ non-polymer . ;2-amino-1-[(R)-{[(2R,3S,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-3-[(S)-{[(2R,3S,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-1H-imidazol-3-ium (non-preferred name) ; ? 'C23 H30 N13 O12 P2 1' 742.512 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 LKC 'RNA linking' . '4-AMINO-1-[(1S,3R,4R,7S)-7-HYDROXY-1-(HYDROXYMETHYL)-2,5-DIOXABICYCLO[2.2.1]HEPT-3-YL]-5-METHYLPYRIMIDIN-2(1H)-ONE' ? 'C11 H15 N3 O5' 269.254 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LKC 1 1 1 LKC LCC A . n A 1 2 LCC 2 2 2 LCC LCC A . n A 1 3 LCC 3 3 3 LCC LCC A . n A 1 4 LCG 4 4 4 LCG LCG A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n B 1 1 LKC 1 1 1 LKC LCC B . n B 1 2 LCC 2 2 2 LCC LCC B . n B 1 3 LCC 3 3 3 LCC LCC B . n B 1 4 LCG 4 4 4 LCG LCG B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 U 7 7 7 U U B . n B 1 8 U 8 8 8 U U B . n B 1 9 A 9 9 9 A A B . n B 1 10 A 10 10 10 A A B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 12 U U B . n B 1 13 C 13 13 13 C C B . n B 1 14 G 14 14 14 G G B . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1CGJ _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1CGJ _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1CGJ 1 101 101 A1CGJ EQD A . D 3 MG 1 102 1 MG MG A . E 3 MG 1 103 2 MG MG A . F 3 MG 1 104 5 MG MG A . G 3 MG 1 105 7 MG MG A . H 2 A1CGJ 1 101 101 A1CGJ EQD B . I 3 MG 1 102 3 MG MG B . J 3 MG 1 103 4 MG MG B . K 3 MG 1 104 6 MG MG B . L 4 HOH 1 201 83 HOH HOH A . L 4 HOH 2 202 23 HOH HOH A . L 4 HOH 3 203 90 HOH HOH A . L 4 HOH 4 204 91 HOH HOH A . L 4 HOH 5 205 115 HOH HOH A . L 4 HOH 6 206 134 HOH HOH A . L 4 HOH 7 207 22 HOH HOH A . L 4 HOH 8 208 43 HOH HOH A . L 4 HOH 9 209 46 HOH HOH A . L 4 HOH 10 210 81 HOH HOH A . L 4 HOH 11 211 2 HOH HOH A . L 4 HOH 12 212 45 HOH HOH A . L 4 HOH 13 213 21 HOH HOH A . L 4 HOH 14 214 24 HOH HOH A . L 4 HOH 15 215 86 HOH HOH A . L 4 HOH 16 216 94 HOH HOH A . L 4 HOH 17 217 80 HOH HOH A . L 4 HOH 18 218 52 HOH HOH A . L 4 HOH 19 219 27 HOH HOH A . L 4 HOH 20 220 19 HOH HOH A . L 4 HOH 21 221 26 HOH HOH A . L 4 HOH 22 222 30 HOH HOH A . L 4 HOH 23 223 9 HOH HOH A . L 4 HOH 24 224 3 HOH HOH A . L 4 HOH 25 225 44 HOH HOH A . L 4 HOH 26 226 39 HOH HOH A . L 4 HOH 27 227 10 HOH HOH A . L 4 HOH 28 228 50 HOH HOH A . L 4 HOH 29 229 20 HOH HOH A . L 4 HOH 30 230 99 HOH HOH A . L 4 HOH 31 231 59 HOH HOH A . L 4 HOH 32 232 29 HOH HOH A . L 4 HOH 33 233 28 HOH HOH A . L 4 HOH 34 234 12 HOH HOH A . L 4 HOH 35 235 18 HOH HOH A . L 4 HOH 36 236 36 HOH HOH A . L 4 HOH 37 237 87 HOH HOH A . L 4 HOH 38 238 122 HOH HOH A . L 4 HOH 39 239 111 HOH HOH A . L 4 HOH 40 240 31 HOH HOH A . L 4 HOH 41 241 127 HOH HOH A . L 4 HOH 42 242 119 HOH HOH A . L 4 HOH 43 243 118 HOH HOH A . L 4 HOH 44 244 42 HOH HOH A . L 4 HOH 45 245 63 HOH HOH A . L 4 HOH 46 246 8 HOH HOH A . L 4 HOH 47 247 79 HOH HOH A . L 4 HOH 48 248 113 HOH HOH A . L 4 HOH 49 249 7 HOH HOH A . L 4 HOH 50 250 116 HOH HOH A . L 4 HOH 51 251 125 HOH HOH A . L 4 HOH 52 252 11 HOH HOH A . L 4 HOH 53 253 121 HOH HOH A . L 4 HOH 54 254 98 HOH HOH A . L 4 HOH 55 255 112 HOH HOH A . L 4 HOH 56 256 34 HOH HOH A . L 4 HOH 57 257 62 HOH HOH A . L 4 HOH 58 258 25 HOH HOH A . L 4 HOH 59 259 100 HOH HOH A . L 4 HOH 60 260 70 HOH HOH A . L 4 HOH 61 261 117 HOH HOH A . L 4 HOH 62 262 88 HOH HOH A . L 4 HOH 63 263 108 HOH HOH A . L 4 HOH 64 264 6 HOH HOH A . L 4 HOH 65 265 137 HOH HOH A . L 4 HOH 66 266 89 HOH HOH A . L 4 HOH 67 267 68 HOH HOH A . M 4 HOH 1 201 103 HOH HOH B . M 4 HOH 2 202 13 HOH HOH B . M 4 HOH 3 203 15 HOH HOH B . M 4 HOH 4 204 4 HOH HOH B . M 4 HOH 5 205 67 HOH HOH B . M 4 HOH 6 206 92 HOH HOH B . M 4 HOH 7 207 135 HOH HOH B . M 4 HOH 8 208 73 HOH HOH B . M 4 HOH 9 209 95 HOH HOH B . M 4 HOH 10 210 132 HOH HOH B . M 4 HOH 11 211 71 HOH HOH B . M 4 HOH 12 212 84 HOH HOH B . M 4 HOH 13 213 56 HOH HOH B . M 4 HOH 14 214 82 HOH HOH B . M 4 HOH 15 215 133 HOH HOH B . M 4 HOH 16 216 106 HOH HOH B . M 4 HOH 17 217 136 HOH HOH B . M 4 HOH 18 218 14 HOH HOH B . M 4 HOH 19 219 35 HOH HOH B . M 4 HOH 20 220 75 HOH HOH B . M 4 HOH 21 221 61 HOH HOH B . M 4 HOH 22 222 53 HOH HOH B . M 4 HOH 23 223 51 HOH HOH B . M 4 HOH 24 224 48 HOH HOH B . M 4 HOH 25 225 41 HOH HOH B . M 4 HOH 26 226 1 HOH HOH B . M 4 HOH 27 227 131 HOH HOH B . M 4 HOH 28 228 74 HOH HOH B . M 4 HOH 29 229 38 HOH HOH B . M 4 HOH 30 230 123 HOH HOH B . M 4 HOH 31 231 109 HOH HOH B . M 4 HOH 32 232 32 HOH HOH B . M 4 HOH 33 233 57 HOH HOH B . M 4 HOH 34 234 65 HOH HOH B . M 4 HOH 35 235 110 HOH HOH B . M 4 HOH 36 236 16 HOH HOH B . M 4 HOH 37 237 58 HOH HOH B . M 4 HOH 38 238 64 HOH HOH B . M 4 HOH 39 239 33 HOH HOH B . M 4 HOH 40 240 69 HOH HOH B . M 4 HOH 41 241 72 HOH HOH B . M 4 HOH 42 242 93 HOH HOH B . M 4 HOH 43 243 85 HOH HOH B . M 4 HOH 44 244 66 HOH HOH B . M 4 HOH 45 245 40 HOH HOH B . M 4 HOH 46 246 105 HOH HOH B . M 4 HOH 47 247 54 HOH HOH B . M 4 HOH 48 248 107 HOH HOH B . M 4 HOH 49 249 138 HOH HOH B . M 4 HOH 50 250 124 HOH HOH B . M 4 HOH 51 251 37 HOH HOH B . M 4 HOH 52 252 102 HOH HOH B . M 4 HOH 53 253 17 HOH HOH B . M 4 HOH 54 254 76 HOH HOH B . M 4 HOH 55 255 130 HOH HOH B . M 4 HOH 56 256 101 HOH HOH B . M 4 HOH 57 257 120 HOH HOH B . M 4 HOH 58 258 49 HOH HOH B . M 4 HOH 59 259 78 HOH HOH B . M 4 HOH 60 260 5 HOH HOH B . M 4 HOH 61 261 128 HOH HOH B . M 4 HOH 62 262 126 HOH HOH B . M 4 HOH 63 263 77 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0425 ? 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . ? 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 9OL3 _cell.details ? _cell.formula_units_Z ? _cell.length_a 48.241 _cell.length_a_esd ? _cell.length_b 48.241 _cell.length_b_esd ? _cell.length_c 82.663 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9OL3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9OL3 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.13 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 60.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.05 M HEPES pH 7.0, 0.2 M Ammonium acetate, 0.15 M Magnesium acetate, 10% w/v Polyethylene glycol 6,000.' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-04-23 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.033175 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.033175 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9OL3 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.557 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15265 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 92.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.5 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 49.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.236 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.057 _reflns.pdbx_Rpim_I_all 0.023 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.988 _reflns.pdbx_CC_star 0.997 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.557 _reflns_shell.d_res_low 1.59 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 433 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.7 _reflns_shell.pdbx_chi_squared 0.569 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.498 _reflns_shell.pdbx_Rpim_I_all 0.231 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.965 _reflns_shell.pdbx_CC_star 0.991 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 55.2 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.438 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] -0.007 _refine.aniso_B[1][2] -0.003 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][2] -0.007 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] 0.022 _refine.B_iso_max ? _refine.B_iso_mean 48.136 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.972 _refine.correlation_coeff_Fo_to_Fc_free 0.966 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9OL3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.557 _refine.ls_d_res_low 41.778 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15265 _refine.ls_number_reflns_R_free 768 _refine.ls_number_reflns_R_work 14497 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 92.291 _refine.ls_percent_reflns_R_free 5.031 _refine.ls_R_factor_all 0.206 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2494 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2039 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.091 _refine.pdbx_overall_ESU_R_Free 0.097 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 3.633 _refine.overall_SU_ML 0.109 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.557 _refine_hist.d_res_low 41.778 _refine_hist.number_atoms_solvent 130 _refine_hist.number_atoms_total 835 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 598 _refine_hist.pdbx_number_atoms_ligand 107 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.020 0.017 784 ? r_bond_refined_d ? ? ? 'X-RAY DIFFRACTION' ? 0.026 0.023 354 ? r_bond_other_d ? ? ? 'X-RAY DIFFRACTION' ? 2.933 2.323 1202 ? r_angle_refined_deg ? ? ? 'X-RAY DIFFRACTION' ? 3.476 2.482 832 ? r_angle_other_deg ? ? ? 'X-RAY DIFFRACTION' ? 0.051 5.000 14 ? r_dihedral_angle_other_2_deg ? ? ? 'X-RAY DIFFRACTION' ? 0.176 0.200 152 ? r_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 1.552 0.200 24 ? r_chiral_restr_other ? ? ? 'X-RAY DIFFRACTION' ? 0.015 0.021 416 ? r_gen_planes_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.001 0.023 136 ? r_gen_planes_other ? ? ? 'X-RAY DIFFRACTION' ? 0.090 0.200 59 ? r_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.201 0.200 431 ? r_symmetry_nbd_other ? ? ? 'X-RAY DIFFRACTION' ? 0.253 0.200 311 ? r_nbtor_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.237 0.200 178 ? r_symmetry_nbtor_other ? ? ? 'X-RAY DIFFRACTION' ? 0.193 0.200 114 ? r_xyhbond_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.114 0.200 8 ? r_metal_ion_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.160 0.200 9 ? r_symmetry_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.175 0.200 43 ? r_nbd_other ? ? ? 'X-RAY DIFFRACTION' ? 0.162 0.200 21 ? r_symmetry_xyhbond_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? 5.119 5.910 784 ? r_scbond_it ? ? ? 'X-RAY DIFFRACTION' ? 5.116 5.909 785 ? r_scbond_other ? ? ? 'X-RAY DIFFRACTION' ? 6.980 10.735 1202 ? r_scangle_it ? ? ? 'X-RAY DIFFRACTION' ? 6.978 10.733 1203 ? r_scangle_other ? ? ? 'X-RAY DIFFRACTION' ? 8.029 72.963 1165 ? r_lrange_it ? ? ? 'X-RAY DIFFRACTION' ? 7.577 72.236 1100 ? r_lrange_other ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.557 1.598 1189 . 28 624 54.8360 . 0.475 . . 0.474 . . . . . 0.341 . . . . . 20 . 0.771 0.658 0.494 'X-RAY DIFFRACTION' 1.598 1.641 1159 . 51 751 69.1976 . 0.456 . . 0.460 . . . . . 0.299 . . . . . 20 . 0.786 0.816 0.399 'X-RAY DIFFRACTION' 1.641 1.689 1145 . 50 946 86.9869 . 0.492 . . 0.492 . . . . . 0.338 . . . . . 20 . 0.756 0.701 0.494 'X-RAY DIFFRACTION' 1.689 1.741 1112 . 39 1017 94.9640 . 0.408 . . 0.406 . . . . . 0.275 . . . . . 20 . 0.831 0.779 0.457 'X-RAY DIFFRACTION' 1.741 1.798 1060 . 55 996 99.1509 . 0.351 . . 0.344 . . . . . 0.280 . . . . . 20 . 0.899 0.858 0.478 'X-RAY DIFFRACTION' 1.798 1.861 1047 . 57 978 98.8539 . 0.305 . . 0.299 . . . . . 0.245 . . . . . 20 . 0.930 0.902 0.419 'X-RAY DIFFRACTION' 1.861 1.931 1022 . 53 962 99.3151 . 0.273 . . 0.268 . . . . . 0.237 . . . . . 20 . 0.949 0.892 0.381 'X-RAY DIFFRACTION' 1.931 2.010 952 . 37 910 99.4748 . 0.272 . . 0.268 . . . . . 0.233 . . . . . 20 . 0.949 0.927 0.379 'X-RAY DIFFRACTION' 2.010 2.099 936 . 33 892 98.8248 . 0.236 . . 0.234 . . . . . 0.198 . . . . . 20 . 0.964 0.955 0.276 'X-RAY DIFFRACTION' 2.099 2.201 892 . 46 827 97.8700 . 0.219 . . 0.215 . . . . . 0.188 . . . . . 20 . 0.970 0.953 0.279 'X-RAY DIFFRACTION' 2.201 2.320 853 . 62 784 99.1794 . 0.215 . . 0.205 . . . . . 0.191 . . . . . 20 . 0.972 0.958 0.375 'X-RAY DIFFRACTION' 2.320 2.460 806 . 46 742 97.7668 . 0.202 . . 0.196 . . . . . 0.184 . . . . . 20 . 0.975 0.952 0.295 'X-RAY DIFFRACTION' 2.460 2.629 755 . 41 694 97.3510 . 0.223 . . 0.221 . . . . . 0.215 . . . . . 20 . 0.968 0.964 0.256 'X-RAY DIFFRACTION' 2.629 2.839 724 . 47 665 98.3425 . 0.228 . . 0.226 . . . . . 0.231 . . . . . 20 . 0.967 0.956 0.262 'X-RAY DIFFRACTION' 2.839 3.108 660 . 21 623 97.5758 . 0.219 . . 0.218 . . . . . 0.233 . . . . . 20 . 0.973 0.946 0.248 'X-RAY DIFFRACTION' 3.108 3.473 605 . 21 569 97.5207 . 0.201 . . 0.200 . . . . . 0.237 . . . . . 20 . 0.980 0.973 0.227 'X-RAY DIFFRACTION' 3.473 4.005 546 . 25 513 98.5348 . 0.178 . . 0.175 . . . . . 0.221 . . . . . 20 . 0.986 0.981 0.229 'X-RAY DIFFRACTION' 4.005 4.894 465 . 24 431 97.8495 . 0.151 . . 0.148 . . . . . 0.205 . . . . . 20 . 0.986 0.958 0.230 'X-RAY DIFFRACTION' 4.894 6.875 375 . 27 346 99.4667 . 0.176 . . 0.176 . . . . . 0.256 . . . . . 20 . 0.983 0.984 0.178 'X-RAY DIFFRACTION' 6.875 41.778 234 . 5 227 99.1453 . 0.279 . . 0.274 . . . . . 0.331 . . . . . 20 . 0.944 0.925 0.457 # _struct.entry_id 9OL3 _struct.title 'DNA-imidazolium-bridged dinucleotide intermediate complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9OL3 _struct_keywords.text 'Imidazolium-bridged dinucleotide, RNA duplex, deoxyribo-purine, Origin of Life, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9OL3 _struct_ref.pdbx_db_accession 9OL3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9OL3 A 1 ? 14 ? 9OL3 1 ? 14 ? 1 14 2 1 9OL3 B 1 ? 14 ? 9OL3 1 ? 14 ? 1 14 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3780 ? 1 MORE -29 ? 1 'SSA (A^2)' 5880 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LKC 1 "O3'" ? ? ? 1_555 A LCC 2 P ? ? A LKC 1 A LCC 2 1_555 ? ? ? ? ? ? ? 1.647 ? ? covale2 covale both ? A LCC 2 "O3'" ? ? ? 1_555 A LCC 3 P ? ? A LCC 2 A LCC 3 1_555 ? ? ? ? ? ? ? 1.639 ? ? covale3 covale both ? A LCC 3 "O3'" ? ? ? 1_555 A LCG 4 P ? ? A LCC 3 A LCG 4 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale4 covale both ? A LCG 4 "O3'" ? ? ? 1_555 A A 5 P ? ? A LCG 4 A A 5 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale5 covale both ? B LKC 1 "O3'" ? ? ? 1_555 B LCC 2 P ? ? B LKC 1 B LCC 2 1_555 ? ? ? ? ? ? ? 1.649 ? ? covale6 covale both ? B LCC 2 "O3'" ? ? ? 1_555 B LCC 3 P ? ? B LCC 2 B LCC 3 1_555 ? ? ? ? ? ? ? 1.647 ? ? covale7 covale both ? B LCC 3 "O3'" ? ? ? 1_555 B LCG 4 P ? ? B LCC 3 B LCG 4 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale8 covale both ? B LCG 4 "O3'" ? ? ? 1_555 B A 5 P ? ? B LCG 4 B A 5 1_555 ? ? ? ? ? ? ? 1.580 ? ? metalc1 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 102 A HOH 211 1_555 ? ? ? ? ? ? ? 2.108 ? ? metalc2 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 102 A HOH 224 1_555 ? ? ? ? ? ? ? 2.107 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 102 A HOH 264 1_555 ? ? ? ? ? ? ? 2.213 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 102 B HOH 204 1_555 ? ? ? ? ? ? ? 2.114 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 102 B HOH 226 1_555 ? ? ? ? ? ? ? 2.038 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 102 B HOH 260 1_555 ? ? ? ? ? ? ? 2.098 ? ? metalc7 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 103 A HOH 220 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 103 A HOH 229 1_555 ? ? ? ? ? ? ? 2.124 ? ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 103 A HOH 235 1_555 ? ? ? ? ? ? ? 2.158 ? ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 103 B HOH 236 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 103 B HOH 240 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc12 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 103 B HOH 253 1_555 ? ? ? ? ? ? ? 2.014 ? ? metalc13 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 104 A HOH 202 1_555 ? ? ? ? ? ? ? 2.097 ? ? metalc14 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 104 A HOH 207 1_555 ? ? ? ? ? ? ? 1.814 ? ? metalc15 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 104 A HOH 214 1_555 ? ? ? ? ? ? ? 2.267 ? ? metalc16 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 104 A HOH 258 1_555 ? ? ? ? ? ? ? 1.987 ? ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 104 A HOH 266 1_555 ? ? ? ? ? ? ? 2.041 ? ? metalc18 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 104 A HOH 267 1_555 ? ? ? ? ? ? ? 2.267 ? ? metalc19 metalc ? ? G MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 105 A HOH 208 1_555 ? ? ? ? ? ? ? 2.573 ? ? metalc20 metalc ? ? G MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 105 A HOH 225 1_555 ? ? ? ? ? ? ? 2.456 ? ? metalc21 metalc ? ? G MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 105 A HOH 262 1_555 ? ? ? ? ? ? ? 2.011 ? ? metalc22 metalc ? ? G MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 105 B HOH 201 1_555 ? ? ? ? ? ? ? 1.936 ? ? metalc23 metalc ? ? L HOH . O ? ? ? 1_555 K MG . MG ? ? A HOH 201 B MG 104 1_555 ? ? ? ? ? ? ? 1.805 ? ? metalc24 metalc ? ? L HOH . O ? ? ? 1_555 I MG . MG ? ? A HOH 236 B MG 102 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc25 metalc ? ? L HOH . O ? ? ? 1_555 I MG . MG ? ? A HOH 240 B MG 102 1_555 ? ? ? ? ? ? ? 2.052 ? ? metalc26 metalc ? ? L HOH . O ? ? ? 1_555 I MG . MG ? ? A HOH 256 B MG 102 1_555 ? ? ? ? ? ? ? 2.040 ? ? metalc27 metalc ? ? I MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 102 B HOH 219 1_555 ? ? ? ? ? ? ? 1.986 ? ? metalc28 metalc ? ? I MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 102 B HOH 232 3_565 ? ? ? ? ? ? ? 2.116 ? ? metalc29 metalc ? ? I MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 102 B HOH 239 1_555 ? ? ? ? ? ? ? 2.200 ? ? metalc30 metalc ? ? J MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 103 B HOH 202 1_555 ? ? ? ? ? ? ? 2.229 ? ? metalc31 metalc ? ? J MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 103 B HOH 203 1_555 ? ? ? ? ? ? ? 1.877 ? ? metalc32 metalc ? ? J MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 103 B HOH 218 1_555 ? ? ? ? ? ? ? 2.254 ? ? metalc33 metalc ? ? J MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 103 B HOH 254 1_555 ? ? ? ? ? ? ? 1.902 ? ? metalc34 metalc ? ? J MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 103 B HOH 259 1_555 ? ? ? ? ? ? ? 1.867 ? ? metalc35 metalc ? ? J MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 103 B HOH 263 1_555 ? ? ? ? ? ? ? 2.139 ? ? metalc36 metalc ? ? K MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 104 B HOH 214 1_555 ? ? ? ? ? ? ? 2.517 ? ? metalc37 metalc ? ? K MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 104 B HOH 233 1_555 ? ? ? ? ? ? ? 2.352 ? ? metalc38 metalc ? ? K MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 104 B HOH 262 1_555 ? ? ? ? ? ? ? 2.060 ? ? hydrog1 hydrog ? ? A LCG 4 N1 ? ? ? 1_555 B C 13 N3 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A LCG 4 N2 ? ? ? 1_555 B C 13 O2 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A LCG 4 O6 ? ? ? 1_555 B C 13 N4 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N3 ? ? ? 1_555 B LCG 4 N1 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 N4 ? ? ? 1_555 B LCG 4 O6 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 O2 ? ? ? 1_555 B LCG 4 N2 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? L HOH . ? A HOH 211 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 224 ? 1_555 88.8 ? 2 O ? L HOH . ? A HOH 211 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 264 ? 1_555 80.1 ? 3 O ? L HOH . ? A HOH 224 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 264 ? 1_555 79.9 ? 4 O ? L HOH . ? A HOH 211 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 204 ? 1_555 103.9 ? 5 O ? L HOH . ? A HOH 224 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 204 ? 1_555 99.9 ? 6 O ? L HOH . ? A HOH 264 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 204 ? 1_555 176.0 ? 7 O ? L HOH . ? A HOH 211 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 226 ? 1_555 98.2 ? 8 O ? L HOH . ? A HOH 224 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 226 ? 1_555 168.3 ? 9 O ? L HOH . ? A HOH 264 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 226 ? 1_555 92.0 ? 10 O ? M HOH . ? B HOH 204 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 226 ? 1_555 87.5 ? 11 O ? L HOH . ? A HOH 211 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 260 ? 1_555 175.1 ? 12 O ? L HOH . ? A HOH 224 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 260 ? 1_555 90.6 ? 13 O ? L HOH . ? A HOH 264 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 260 ? 1_555 95.1 ? 14 O ? M HOH . ? B HOH 204 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 260 ? 1_555 80.9 ? 15 O ? M HOH . ? B HOH 226 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 260 ? 1_555 81.6 ? 16 O ? L HOH . ? A HOH 220 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 229 ? 1_555 90.6 ? 17 O ? L HOH . ? A HOH 220 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 235 ? 1_555 94.2 ? 18 O ? L HOH . ? A HOH 229 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 235 ? 1_555 88.4 ? 19 O ? L HOH . ? A HOH 220 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? M HOH . ? B HOH 236 ? 1_555 93.2 ? 20 O ? L HOH . ? A HOH 229 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? M HOH . ? B HOH 236 ? 1_555 87.2 ? 21 O ? L HOH . ? A HOH 235 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? M HOH . ? B HOH 236 ? 1_555 171.4 ? 22 O ? L HOH . ? A HOH 220 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? M HOH . ? B HOH 240 ? 1_555 88.5 ? 23 O ? L HOH . ? A HOH 229 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? M HOH . ? B HOH 240 ? 1_555 171.8 ? 24 O ? L HOH . ? A HOH 235 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? M HOH . ? B HOH 240 ? 1_555 83.5 ? 25 O ? M HOH . ? B HOH 236 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? M HOH . ? B HOH 240 ? 1_555 101.0 ? 26 O ? L HOH . ? A HOH 220 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? M HOH . ? B HOH 253 ? 1_555 174.5 ? 27 O ? L HOH . ? A HOH 229 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? M HOH . ? B HOH 253 ? 1_555 93.5 ? 28 O ? L HOH . ? A HOH 235 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? M HOH . ? B HOH 253 ? 1_555 82.3 ? 29 O ? M HOH . ? B HOH 236 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? M HOH . ? B HOH 253 ? 1_555 90.6 ? 30 O ? M HOH . ? B HOH 240 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? M HOH . ? B HOH 253 ? 1_555 86.9 ? 31 O ? L HOH . ? A HOH 202 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 207 ? 1_555 88.1 ? 32 O ? L HOH . ? A HOH 202 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 214 ? 1_555 103.4 ? 33 O ? L HOH . ? A HOH 207 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 214 ? 1_555 109.6 ? 34 O ? L HOH . ? A HOH 202 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 258 ? 1_555 164.7 ? 35 O ? L HOH . ? A HOH 207 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 258 ? 1_555 106.8 ? 36 O ? L HOH . ? A HOH 214 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 258 ? 1_555 75.3 ? 37 O ? L HOH . ? A HOH 202 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 266 ? 1_555 82.2 ? 38 O ? L HOH . ? A HOH 207 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 266 ? 1_555 167.2 ? 39 O ? L HOH . ? A HOH 214 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 266 ? 1_555 81.0 ? 40 O ? L HOH . ? A HOH 258 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 266 ? 1_555 82.6 ? 41 O ? L HOH . ? A HOH 202 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 267 ? 1_555 86.0 ? 42 O ? L HOH . ? A HOH 207 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 267 ? 1_555 96.6 ? 43 O ? L HOH . ? A HOH 214 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 267 ? 1_555 152.3 ? 44 O ? L HOH . ? A HOH 258 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 267 ? 1_555 88.8 ? 45 O ? L HOH . ? A HOH 266 ? 1_555 MG ? F MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 267 ? 1_555 74.5 ? 46 O ? L HOH . ? A HOH 208 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 225 ? 1_555 64.8 ? 47 O ? L HOH . ? A HOH 208 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 262 ? 1_555 60.5 ? 48 O ? L HOH . ? A HOH 225 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 262 ? 1_555 67.7 ? 49 O ? L HOH . ? A HOH 208 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? M HOH . ? B HOH 201 ? 1_555 73.1 ? 50 O ? L HOH . ? A HOH 225 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? M HOH . ? B HOH 201 ? 1_555 80.9 ? 51 O ? L HOH . ? A HOH 262 ? 1_555 MG ? G MG . ? A MG 105 ? 1_555 O ? M HOH . ? B HOH 201 ? 1_555 131.5 ? 52 O ? L HOH . ? A HOH 201 ? 1_555 MG ? K MG . ? B MG 104 ? 1_555 O ? M HOH . ? B HOH 214 ? 1_555 70.0 ? 53 O ? L HOH . ? A HOH 201 ? 1_555 MG ? K MG . ? B MG 104 ? 1_555 O ? M HOH . ? B HOH 233 ? 1_555 92.3 ? 54 O ? M HOH . ? B HOH 214 ? 1_555 MG ? K MG . ? B MG 104 ? 1_555 O ? M HOH . ? B HOH 233 ? 1_555 71.7 ? 55 O ? L HOH . ? A HOH 201 ? 1_555 MG ? K MG . ? B MG 104 ? 1_555 O ? M HOH . ? B HOH 262 ? 1_555 138.2 ? 56 O ? M HOH . ? B HOH 214 ? 1_555 MG ? K MG . ? B MG 104 ? 1_555 O ? M HOH . ? B HOH 262 ? 1_555 68.9 ? 57 O ? M HOH . ? B HOH 233 ? 1_555 MG ? K MG . ? B MG 104 ? 1_555 O ? M HOH . ? B HOH 262 ? 1_555 82.3 ? 58 O ? L HOH . ? A HOH 236 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? L HOH . ? A HOH 240 ? 1_555 95.2 ? 59 O ? L HOH . ? A HOH 236 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? L HOH . ? A HOH 256 ? 1_555 90.9 ? 60 O ? L HOH . ? A HOH 240 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? L HOH . ? A HOH 256 ? 1_555 89.2 ? 61 O ? L HOH . ? A HOH 236 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 219 ? 1_555 91.4 ? 62 O ? L HOH . ? A HOH 240 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 219 ? 1_555 86.2 ? 63 O ? L HOH . ? A HOH 256 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 219 ? 1_555 175.1 ? 64 O ? L HOH . ? A HOH 236 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 232 ? 3_565 88.2 ? 65 O ? L HOH . ? A HOH 240 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 232 ? 3_565 176.4 ? 66 O ? L HOH . ? A HOH 256 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 232 ? 3_565 92.0 ? 67 O ? M HOH . ? B HOH 219 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 232 ? 3_565 92.5 ? 68 O ? L HOH . ? A HOH 236 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 239 ? 1_555 172.0 ? 69 O ? L HOH . ? A HOH 240 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 239 ? 1_555 87.6 ? 70 O ? L HOH . ? A HOH 256 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 239 ? 1_555 81.7 ? 71 O ? M HOH . ? B HOH 219 ? 1_555 MG ? I MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 239 ? 1_555 96.2 ? 72 O ? M HOH . ? B HOH 232 ? 3_565 MG ? I MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 239 ? 1_555 89.2 ? 73 O ? M HOH . ? B HOH 202 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? B HOH 203 ? 1_555 85.3 ? 74 O ? M HOH . ? B HOH 202 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? B HOH 218 ? 1_555 98.1 ? 75 O ? M HOH . ? B HOH 203 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? B HOH 218 ? 1_555 110.4 ? 76 O ? M HOH . ? B HOH 202 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? B HOH 254 ? 1_555 166.9 ? 77 O ? M HOH . ? B HOH 203 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? B HOH 254 ? 1_555 107.3 ? 78 O ? M HOH . ? B HOH 218 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? B HOH 254 ? 1_555 80.7 ? 79 O ? M HOH . ? B HOH 202 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? B HOH 259 ? 1_555 68.5 ? 80 O ? M HOH . ? B HOH 203 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? B HOH 259 ? 1_555 152.6 ? 81 O ? M HOH . ? B HOH 218 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? B HOH 259 ? 1_555 82.5 ? 82 O ? M HOH . ? B HOH 254 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? B HOH 259 ? 1_555 98.4 ? 83 O ? M HOH . ? B HOH 202 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? B HOH 263 ? 1_555 85.9 ? 84 O ? M HOH . ? B HOH 203 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? B HOH 263 ? 1_555 97.7 ? 85 O ? M HOH . ? B HOH 218 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? B HOH 263 ? 1_555 151.8 ? 86 O ? M HOH . ? B HOH 254 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? B HOH 263 ? 1_555 89.1 ? 87 O ? M HOH . ? B HOH 259 ? 1_555 MG ? J MG . ? B MG 103 ? 1_555 O ? M HOH . ? B HOH 263 ? 1_555 73.1 ? # _pdbx_entry_details.entry_id 9OL3 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 251 ? ? O B HOH 261 ? ? 2.08 2 1 N7B A A1CGJ 101 ? ? O A HOH 201 ? ? 2.08 3 1 N7B B A1CGJ 101 ? ? O B HOH 201 ? ? 2.11 4 1 O6 B G 11 ? ? O B HOH 202 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A C 6 ? ? P A C 6 ? ? OP2 A C 6 ? ? 99.37 105.70 -6.33 0.90 N 2 1 "O5'" A C 13 ? ? P A C 13 ? ? OP2 A C 13 ? ? 99.82 105.70 -5.88 0.90 N 3 1 "O5'" B C 6 ? ? P B C 6 ? ? OP2 B C 6 ? ? 100.25 105.70 -5.45 0.90 N 4 1 "O5'" B U 8 ? ? P B U 8 ? ? OP2 B U 8 ? ? 99.51 105.70 -6.19 0.90 N 5 1 "O5'" B C 13 ? ? P B C 13 ? ? OP2 B C 13 ? ? 100.11 105.70 -5.59 0.90 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 254 ? L HOH . 2 1 A HOH 259 ? L HOH . 3 1 B HOH 252 ? M HOH . 4 1 B HOH 256 ? M HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A1CGJ O6A O N N 38 A1CGJ C6A C N N 39 A1CGJ N1A N N N 40 A1CGJ C2A C N N 41 A1CGJ N2A N N N 42 A1CGJ N3A N N N 43 A1CGJ C4A C Y N 44 A1CGJ C5A C Y N 45 A1CGJ N7A N Y N 46 A1CGJ C8A C Y N 47 A1CGJ N9A N Y N 48 A1CGJ C1D C N R 49 A1CGJ O4D O N N 50 A1CGJ C2D C N N 51 A1CGJ C3D C N S 52 A1CGJ O3D O N N 53 A1CGJ C4D C N R 54 A1CGJ C5D C N N 55 A1CGJ O5D O N N 56 A1CGJ PA P N N 57 A1CGJ O1A O N N 58 A1CGJ O2A O N N 59 A1CGJ N1C N Y N 60 A1CGJ C1C C Y N 61 A1CGJ N3C N N N 62 A1CGJ C3C C Y N 63 A1CGJ C2C C Y N 64 A1CGJ N2C N Y N 65 A1CGJ PG P N N 66 A1CGJ O1G O N N 67 A1CGJ O2G O N N 68 A1CGJ O5E O N N 69 A1CGJ C5E C N N 70 A1CGJ C4E C N R 71 A1CGJ O4E O N N 72 A1CGJ C3E C N S 73 A1CGJ O3E O N N 74 A1CGJ C2E C N N 75 A1CGJ C1E C N R 76 A1CGJ N9B N Y N 77 A1CGJ C4B C Y N 78 A1CGJ N3B N N N 79 A1CGJ C2B C N N 80 A1CGJ N2B N N N 81 A1CGJ N1B N N N 82 A1CGJ C6B C N N 83 A1CGJ O6B O N N 84 A1CGJ C5B C Y N 85 A1CGJ N7B N Y N 86 A1CGJ C8B C Y N 87 A1CGJ H1A H N N 88 A1CGJ H8I H N N 89 A1CGJ H2A H N N 90 A1CGJ H8A H N N 91 A1CGJ H1D H N N 92 A1CGJ H2D H N N 93 A1CGJ H8B H N N 94 A1CGJ H3D H N N 95 A1CGJ H8G H N N 96 A1CGJ H4D H N N 97 A1CGJ H8C H N N 98 A1CGJ H5D H N N 99 A1CGJ H1 H N N 100 A1CGJ H8L H N N 101 A1CGJ H3C H N N 102 A1CGJ H2C H N N 103 A1CGJ H2 H N N 104 A1CGJ H5E H N N 105 A1CGJ H8D H N N 106 A1CGJ H4E H N N 107 A1CGJ H3E H N N 108 A1CGJ H8H H N N 109 A1CGJ H8E H N N 110 A1CGJ H2E H N N 111 A1CGJ H1E H N N 112 A1CGJ H2B H N N 113 A1CGJ H8J H N N 114 A1CGJ H1B H N N 115 A1CGJ H8F H N N 116 A1CGJ H8K H N N 117 C OP3 O N N 118 C P P N N 119 C OP1 O N N 120 C OP2 O N N 121 C "O5'" O N N 122 C "C5'" C N N 123 C "C4'" C N R 124 C "O4'" O N N 125 C "C3'" C N S 126 C "O3'" O N N 127 C "C2'" C N R 128 C "O2'" O N N 129 C "C1'" C N R 130 C N1 N N N 131 C C2 C N N 132 C O2 O N N 133 C N3 N N N 134 C C4 C N N 135 C N4 N N N 136 C C5 C N N 137 C C6 C N N 138 C HOP3 H N N 139 C HOP2 H N N 140 C "H5'" H N N 141 C "H5''" H N N 142 C "H4'" H N N 143 C "H3'" H N N 144 C "HO3'" H N N 145 C "H2'" H N N 146 C "HO2'" H N N 147 C "H1'" H N N 148 C H41 H N N 149 C H42 H N N 150 C H5 H N N 151 C H6 H N N 152 G OP3 O N N 153 G P P N N 154 G OP1 O N N 155 G OP2 O N N 156 G "O5'" O N N 157 G "C5'" C N N 158 G "C4'" C N R 159 G "O4'" O N N 160 G "C3'" C N S 161 G "O3'" O N N 162 G "C2'" C N R 163 G "O2'" O N N 164 G "C1'" C N R 165 G N9 N Y N 166 G C8 C Y N 167 G N7 N Y N 168 G C5 C Y N 169 G C6 C N N 170 G O6 O N N 171 G N1 N N N 172 G C2 C N N 173 G N2 N N N 174 G N3 N N N 175 G C4 C Y N 176 G HOP3 H N N 177 G HOP2 H N N 178 G "H5'" H N N 179 G "H5''" H N N 180 G "H4'" H N N 181 G "H3'" H N N 182 G "HO3'" H N N 183 G "H2'" H N N 184 G "HO2'" H N N 185 G "H1'" H N N 186 G H8 H N N 187 G H1 H N N 188 G H21 H N N 189 G H22 H N N 190 HOH O O N N 191 HOH H1 H N N 192 HOH H2 H N N 193 LCC "O5'" O N N 194 LCC "C5'" C N N 195 LCC "C4'" C N R 196 LCC "O4'" O N N 197 LCC "C1'" C N R 198 LCC N1 N N N 199 LCC C6 C N N 200 LCC C5 C N N 201 LCC C5M C N N 202 LCC C4 C N N 203 LCC N4 N N N 204 LCC N3 N N N 205 LCC C2 C N N 206 LCC O2 O N N 207 LCC "C3'" C N S 208 LCC "C2'" C N R 209 LCC "O2'" O N N 210 LCC "O3'" O N N 211 LCC "C6'" C N N 212 LCC P P N N 213 LCC O1P O N N 214 LCC O2P O N N 215 LCC OXT O N N 216 LCC "H5'1" H N N 217 LCC "H5'2" H N N 218 LCC "H1'" H N N 219 LCC H6 H N N 220 LCC H5M1 H N N 221 LCC H5M2 H N N 222 LCC H5M3 H N N 223 LCC H41 H N N 224 LCC H42 H N N 225 LCC "H3'" H N N 226 LCC "H2'1" H N N 227 LCC H3T H N N 228 LCC "H6'1" H N N 229 LCC "H6'2" H N N 230 LCC H1P H N N 231 LCC HXT H N N 232 LCG P P N N 233 LCG OP1 O N N 234 LCG "O5'" O N N 235 LCG "C5'" C N N 236 LCG "C3'" C N S 237 LCG "C6'" C N N 238 LCG N9 N Y N 239 LCG C8 C Y N 240 LCG C4 C Y N 241 LCG N7 N Y N 242 LCG C5 C Y N 243 LCG C6 C N N 244 LCG "C2'" C N R 245 LCG O6 O N N 246 LCG "C4'" C N R 247 LCG "C1'" C N R 248 LCG C2 C N N 249 LCG N1 N N N 250 LCG "O4'" O N N 251 LCG OP2 O N N 252 LCG N2 N N N 253 LCG N3 N N N 254 LCG "O2'" O N N 255 LCG "O3'" O N N 256 LCG OP3 O N N 257 LCG "H5'" H N N 258 LCG "H5''" H N N 259 LCG "H3'" H N N 260 LCG "H6'1" H N N 261 LCG "H6'2" H N N 262 LCG H8 H N N 263 LCG "H2'" H N N 264 LCG "H1'" H N N 265 LCG H1 H N N 266 LCG HOP2 H N N 267 LCG H21 H N N 268 LCG H22 H N N 269 LCG "HO3'" H N N 270 LCG HOP3 H N N 271 LKC N1 N N N 272 LKC C2 C N N 273 LKC N3 N N N 274 LKC C4 C N N 275 LKC C5 C N N 276 LKC C6 C N N 277 LKC O2 O N N 278 LKC N4 N N N 279 LKC "C1'" C N R 280 LKC "C2'" C N R 281 LKC "C3'" C N S 282 LKC "C4'" C N S 283 LKC "O4'" O N N 284 LKC "O3'" O N N 285 LKC "C5'" C N N 286 LKC "O5'" O N N 287 LKC C5A C N N 288 LKC "O2'" O N N 289 LKC "C6'" C N N 290 LKC H6 H N N 291 LKC H41 H N N 292 LKC H42 H N N 293 LKC "H1'" H N N 294 LKC "H2'1" H N N 295 LKC "H3'" H N N 296 LKC H3T H N N 297 LKC "H5'1" H N N 298 LKC "H5'2" H N N 299 LKC H5T H N N 300 LKC H5M1 H N N 301 LKC H5M2 H N N 302 LKC H5M3 H N N 303 LKC "H6'1" H N N 304 LKC "H6'2" H N N 305 MG MG MG N N 306 U OP3 O N N 307 U P P N N 308 U OP1 O N N 309 U OP2 O N N 310 U "O5'" O N N 311 U "C5'" C N N 312 U "C4'" C N R 313 U "O4'" O N N 314 U "C3'" C N S 315 U "O3'" O N N 316 U "C2'" C N R 317 U "O2'" O N N 318 U "C1'" C N R 319 U N1 N N N 320 U C2 C N N 321 U O2 O N N 322 U N3 N N N 323 U C4 C N N 324 U O4 O N N 325 U C5 C N N 326 U C6 C N N 327 U HOP3 H N N 328 U HOP2 H N N 329 U "H5'" H N N 330 U "H5''" H N N 331 U "H4'" H N N 332 U "H3'" H N N 333 U "HO3'" H N N 334 U "H2'" H N N 335 U "HO2'" H N N 336 U "H1'" H N N 337 U H3 H N N 338 U H5 H N N 339 U H6 H N N 340 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A1CGJ C6A O6A doub N N 40 A1CGJ C6A N1A sing N N 41 A1CGJ C6A C5A sing N N 42 A1CGJ C2A N1A sing N N 43 A1CGJ C2A N2A sing N N 44 A1CGJ C2A N3A doub N N 45 A1CGJ C4A N3A sing N N 46 A1CGJ C4A C5A doub Y N 47 A1CGJ C4A N9A sing Y N 48 A1CGJ C5A N7A sing Y N 49 A1CGJ C8A N7A doub Y N 50 A1CGJ N9A C8A sing Y N 51 A1CGJ C1D N9A sing N N 52 A1CGJ C1D O4D sing N N 53 A1CGJ C1D C2D sing N N 54 A1CGJ C4D O4D sing N N 55 A1CGJ C3D C2D sing N N 56 A1CGJ C3D O3D sing N N 57 A1CGJ C3D C4D sing N N 58 A1CGJ C4D C5D sing N N 59 A1CGJ C5D O5D sing N N 60 A1CGJ PA O5D sing N N 61 A1CGJ PA O1A sing N N 62 A1CGJ PA O2A doub N N 63 A1CGJ N1C PA sing N N 64 A1CGJ N1C C1C sing Y N 65 A1CGJ N1C C3C sing Y N 66 A1CGJ C1C N3C sing N N 67 A1CGJ C1C N2C doub Y N 68 A1CGJ C3C C2C doub Y N 69 A1CGJ N2C C2C sing Y N 70 A1CGJ N2C PG sing N N 71 A1CGJ PG O1G doub N N 72 A1CGJ PG O2G sing N N 73 A1CGJ PG O5E sing N N 74 A1CGJ C5E O5E sing N N 75 A1CGJ C4E C5E sing N N 76 A1CGJ C4E O4E sing N N 77 A1CGJ C4E C3E sing N N 78 A1CGJ C1E O4E sing N N 79 A1CGJ C3E O3E sing N N 80 A1CGJ C3E C2E sing N N 81 A1CGJ C1E C2E sing N N 82 A1CGJ C1E N9B sing N N 83 A1CGJ N9B C4B sing Y N 84 A1CGJ N9B C8B sing Y N 85 A1CGJ C4B N3B sing N N 86 A1CGJ C4B C5B doub Y N 87 A1CGJ C2B N3B doub N N 88 A1CGJ C2B N2B sing N N 89 A1CGJ C2B N1B sing N N 90 A1CGJ C6B N1B sing N N 91 A1CGJ C6B O6B doub N N 92 A1CGJ C6B C5B sing N N 93 A1CGJ C5B N7B sing Y N 94 A1CGJ C8B N7B doub Y N 95 A1CGJ N1A H1A sing N N 96 A1CGJ N2A H8I sing N N 97 A1CGJ N2A H2A sing N N 98 A1CGJ C8A H8A sing N N 99 A1CGJ C1D H1D sing N N 100 A1CGJ C2D H2D sing N N 101 A1CGJ C2D H8B sing N N 102 A1CGJ C3D H3D sing N N 103 A1CGJ O3D H8G sing N N 104 A1CGJ C4D H4D sing N N 105 A1CGJ C5D H8C sing N N 106 A1CGJ C5D H5D sing N N 107 A1CGJ O1A H1 sing N N 108 A1CGJ N3C H8L sing N N 109 A1CGJ C3C H3C sing N N 110 A1CGJ C2C H2C sing N N 111 A1CGJ O2G H2 sing N N 112 A1CGJ C5E H5E sing N N 113 A1CGJ C5E H8D sing N N 114 A1CGJ C4E H4E sing N N 115 A1CGJ C3E H3E sing N N 116 A1CGJ O3E H8H sing N N 117 A1CGJ C2E H8E sing N N 118 A1CGJ C2E H2E sing N N 119 A1CGJ C1E H1E sing N N 120 A1CGJ N2B H2B sing N N 121 A1CGJ N2B H8J sing N N 122 A1CGJ N1B H1B sing N N 123 A1CGJ C8B H8F sing N N 124 A1CGJ N3C H8K sing N N 125 C OP3 P sing N N 126 C OP3 HOP3 sing N N 127 C P OP1 doub N N 128 C P OP2 sing N N 129 C P "O5'" sing N N 130 C OP2 HOP2 sing N N 131 C "O5'" "C5'" sing N N 132 C "C5'" "C4'" sing N N 133 C "C5'" "H5'" sing N N 134 C "C5'" "H5''" sing N N 135 C "C4'" "O4'" sing N N 136 C "C4'" "C3'" sing N N 137 C "C4'" "H4'" sing N N 138 C "O4'" "C1'" sing N N 139 C "C3'" "O3'" sing N N 140 C "C3'" "C2'" sing N N 141 C "C3'" "H3'" sing N N 142 C "O3'" "HO3'" sing N N 143 C "C2'" "O2'" sing N N 144 C "C2'" "C1'" sing N N 145 C "C2'" "H2'" sing N N 146 C "O2'" "HO2'" sing N N 147 C "C1'" N1 sing N N 148 C "C1'" "H1'" sing N N 149 C N1 C2 sing N N 150 C N1 C6 sing N N 151 C C2 O2 doub N N 152 C C2 N3 sing N N 153 C N3 C4 doub N N 154 C C4 N4 sing N N 155 C C4 C5 sing N N 156 C N4 H41 sing N N 157 C N4 H42 sing N N 158 C C5 C6 doub N N 159 C C5 H5 sing N N 160 C C6 H6 sing N N 161 G OP3 P sing N N 162 G OP3 HOP3 sing N N 163 G P OP1 doub N N 164 G P OP2 sing N N 165 G P "O5'" sing N N 166 G OP2 HOP2 sing N N 167 G "O5'" "C5'" sing N N 168 G "C5'" "C4'" sing N N 169 G "C5'" "H5'" sing N N 170 G "C5'" "H5''" sing N N 171 G "C4'" "O4'" sing N N 172 G "C4'" "C3'" sing N N 173 G "C4'" "H4'" sing N N 174 G "O4'" "C1'" sing N N 175 G "C3'" "O3'" sing N N 176 G "C3'" "C2'" sing N N 177 G "C3'" "H3'" sing N N 178 G "O3'" "HO3'" sing N N 179 G "C2'" "O2'" sing N N 180 G "C2'" "C1'" sing N N 181 G "C2'" "H2'" sing N N 182 G "O2'" "HO2'" sing N N 183 G "C1'" N9 sing N N 184 G "C1'" "H1'" sing N N 185 G N9 C8 sing Y N 186 G N9 C4 sing Y N 187 G C8 N7 doub Y N 188 G C8 H8 sing N N 189 G N7 C5 sing Y N 190 G C5 C6 sing N N 191 G C5 C4 doub Y N 192 G C6 O6 doub N N 193 G C6 N1 sing N N 194 G N1 C2 sing N N 195 G N1 H1 sing N N 196 G C2 N2 sing N N 197 G C2 N3 doub N N 198 G N2 H21 sing N N 199 G N2 H22 sing N N 200 G N3 C4 sing N N 201 HOH O H1 sing N N 202 HOH O H2 sing N N 203 LCC "O5'" "C5'" sing N N 204 LCC "O5'" P sing N N 205 LCC "C5'" "C4'" sing N N 206 LCC "C5'" "H5'1" sing N N 207 LCC "C5'" "H5'2" sing N N 208 LCC "C4'" "O4'" sing N N 209 LCC "C4'" "C3'" sing N N 210 LCC "C4'" "C6'" sing N N 211 LCC "O4'" "C1'" sing N N 212 LCC "C1'" N1 sing N N 213 LCC "C1'" "C2'" sing N N 214 LCC "C1'" "H1'" sing N N 215 LCC N1 C6 sing N N 216 LCC N1 C2 sing N N 217 LCC C6 C5 doub N N 218 LCC C6 H6 sing N N 219 LCC C5 C5M sing N N 220 LCC C5 C4 sing N N 221 LCC C5M H5M1 sing N N 222 LCC C5M H5M2 sing N N 223 LCC C5M H5M3 sing N N 224 LCC C4 N4 sing N N 225 LCC C4 N3 doub N N 226 LCC N4 H41 sing N N 227 LCC N4 H42 sing N N 228 LCC N3 C2 sing N N 229 LCC C2 O2 doub N N 230 LCC "C3'" "C2'" sing N N 231 LCC "C3'" "O3'" sing N N 232 LCC "C3'" "H3'" sing N N 233 LCC "C2'" "O2'" sing N N 234 LCC "C2'" "H2'1" sing N N 235 LCC "O2'" "C6'" sing N N 236 LCC "O3'" H3T sing N N 237 LCC "C6'" "H6'1" sing N N 238 LCC "C6'" "H6'2" sing N N 239 LCC P O1P sing N N 240 LCC P O2P doub N N 241 LCC P OXT sing N N 242 LCC O1P H1P sing N N 243 LCC OXT HXT sing N N 244 LCG P OP1 doub N N 245 LCG P "O5'" sing N N 246 LCG P OP2 sing N N 247 LCG P OP3 sing N N 248 LCG "O5'" "C5'" sing N N 249 LCG "C5'" "C4'" sing N N 250 LCG "C5'" "H5'" sing N N 251 LCG "C5'" "H5''" sing N N 252 LCG "C3'" "C2'" sing N N 253 LCG "C3'" "C4'" sing N N 254 LCG "C3'" "O3'" sing N N 255 LCG "C3'" "H3'" sing N N 256 LCG "C6'" "C4'" sing N N 257 LCG "C6'" "O2'" sing N N 258 LCG "C6'" "H6'1" sing N N 259 LCG "C6'" "H6'2" sing N N 260 LCG N9 C8 sing Y N 261 LCG N9 C4 sing Y N 262 LCG N9 "C1'" sing N N 263 LCG C8 N7 doub Y N 264 LCG C8 H8 sing N N 265 LCG C4 C5 doub Y N 266 LCG C4 N3 sing N N 267 LCG N7 C5 sing Y N 268 LCG C5 C6 sing N N 269 LCG C6 O6 doub N N 270 LCG C6 N1 sing N N 271 LCG "C2'" "C1'" sing N N 272 LCG "C2'" "O2'" sing N N 273 LCG "C2'" "H2'" sing N N 274 LCG "C4'" "O4'" sing N N 275 LCG "C1'" "O4'" sing N N 276 LCG "C1'" "H1'" sing N N 277 LCG C2 N1 sing N N 278 LCG C2 N2 sing N N 279 LCG C2 N3 doub N N 280 LCG N1 H1 sing N N 281 LCG OP2 HOP2 sing N N 282 LCG N2 H21 sing N N 283 LCG N2 H22 sing N N 284 LCG "O3'" "HO3'" sing N N 285 LCG OP3 HOP3 sing N N 286 LKC N1 C2 sing N N 287 LKC N1 C6 sing N N 288 LKC N1 "C1'" sing N N 289 LKC C2 N3 sing N N 290 LKC C2 O2 doub N N 291 LKC N3 C4 doub N N 292 LKC C4 C5 sing N N 293 LKC C4 N4 sing N N 294 LKC C5 C6 doub N N 295 LKC C5 C5A sing N N 296 LKC C6 H6 sing N N 297 LKC N4 H41 sing N N 298 LKC N4 H42 sing N N 299 LKC "C1'" "C2'" sing N N 300 LKC "C1'" "O4'" sing N N 301 LKC "C1'" "H1'" sing N N 302 LKC "C2'" "C3'" sing N N 303 LKC "C2'" "O2'" sing N N 304 LKC "C2'" "H2'1" sing N N 305 LKC "C3'" "C4'" sing N N 306 LKC "C3'" "O3'" sing N N 307 LKC "C3'" "H3'" sing N N 308 LKC "C4'" "O4'" sing N N 309 LKC "C4'" "C5'" sing N N 310 LKC "C4'" "C6'" sing N N 311 LKC "O3'" H3T sing N N 312 LKC "C5'" "O5'" sing N N 313 LKC "C5'" "H5'1" sing N N 314 LKC "C5'" "H5'2" sing N N 315 LKC "O5'" H5T sing N N 316 LKC C5A H5M1 sing N N 317 LKC C5A H5M2 sing N N 318 LKC C5A H5M3 sing N N 319 LKC "O2'" "C6'" sing N N 320 LKC "C6'" "H6'1" sing N N 321 LKC "C6'" "H6'2" sing N N 322 U OP3 P sing N N 323 U OP3 HOP3 sing N N 324 U P OP1 doub N N 325 U P OP2 sing N N 326 U P "O5'" sing N N 327 U OP2 HOP2 sing N N 328 U "O5'" "C5'" sing N N 329 U "C5'" "C4'" sing N N 330 U "C5'" "H5'" sing N N 331 U "C5'" "H5''" sing N N 332 U "C4'" "O4'" sing N N 333 U "C4'" "C3'" sing N N 334 U "C4'" "H4'" sing N N 335 U "O4'" "C1'" sing N N 336 U "C3'" "O3'" sing N N 337 U "C3'" "C2'" sing N N 338 U "C3'" "H3'" sing N N 339 U "O3'" "HO3'" sing N N 340 U "C2'" "O2'" sing N N 341 U "C2'" "C1'" sing N N 342 U "C2'" "H2'" sing N N 343 U "O2'" "HO2'" sing N N 344 U "C1'" N1 sing N N 345 U "C1'" "H1'" sing N N 346 U N1 C2 sing N N 347 U N1 C6 sing N N 348 U C2 O2 doub N N 349 U C2 N3 sing N N 350 U N3 C4 sing N N 351 U N3 H3 sing N N 352 U C4 O4 doub N N 353 U C4 C5 sing N N 354 U C5 C6 doub N N 355 U C5 H5 sing N N 356 U C6 H6 sing N N 357 # _ndb_struct_conf_na.entry_id 9OL3 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A LCG 4 1_555 B C 13 1_555 -0.248 -0.180 0.090 -3.718 -14.656 -0.483 1 A_LCG4:C13_B A 4 ? B 13 ? 19 1 1 A A 5 1_555 B U 12 1_555 -0.144 -0.100 0.102 2.856 -9.052 -4.009 2 A_A5:U12_B A 5 ? B 12 ? 20 1 1 A C 6 1_555 B G 11 1_555 0.127 -0.196 0.123 7.435 -15.935 -0.306 3 A_C6:G11_B A 6 ? B 11 ? 19 1 1 A U 7 1_555 B A 10 1_555 -0.032 -0.107 0.152 1.977 -14.168 -0.822 4 A_U7:A10_B A 7 ? B 10 ? 20 1 1 A U 8 1_555 B A 9 1_555 -0.286 -0.085 0.092 1.803 -9.425 3.304 5 A_U8:A9_B A 8 ? B 9 ? 20 1 1 A A 9 1_555 B U 8 1_555 0.183 -0.123 0.003 -3.370 -10.800 4.700 6 A_A9:U8_B A 9 ? B 8 ? 20 1 1 A A 10 1_555 B U 7 1_555 0.146 -0.134 0.195 -2.215 -13.589 0.072 7 A_A10:U7_B A 10 ? B 7 ? 20 1 1 A G 11 1_555 B C 6 1_555 -0.136 -0.234 0.138 -6.935 -16.625 -1.489 8 A_G11:C6_B A 11 ? B 6 ? 19 1 1 A U 12 1_555 B A 5 1_555 0.166 -0.074 0.097 -3.079 -9.122 -5.703 9 A_U12:A5_B A 12 ? B 5 ? 20 1 1 A C 13 1_555 B LCG 4 1_555 0.272 -0.179 0.126 3.822 -13.870 -1.021 10 A_C13:LCG4_B A 13 ? B 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A LCG 4 1_555 B C 13 1_555 A A 5 1_555 B U 12 1_555 -0.589 -1.374 3.103 -1.175 3.252 30.330 -3.211 0.902 2.964 6.191 2.237 30.522 1 AA_LCG4A5:U12C13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A A 5 1_555 B U 12 1_555 A C 6 1_555 B G 11 1_555 0.589 -1.431 3.164 0.606 4.066 33.580 -3.080 -0.920 2.985 7.005 -1.044 33.824 2 AA_A5C6:G11U12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A C 6 1_555 B G 11 1_555 A U 7 1_555 B A 10 1_555 -0.240 -1.773 3.375 -2.136 10.566 30.467 -4.966 0.072 2.640 19.360 3.914 32.275 3 AA_C6U7:A10G11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A U 7 1_555 B A 10 1_555 A U 8 1_555 B A 9 1_555 -0.181 -1.326 3.243 -1.190 10.004 28.880 -4.358 0.125 2.652 19.330 2.299 30.551 4 AA_U7U8:A9A10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 A U 8 1_555 B A 9 1_555 A A 9 1_555 B U 8 1_555 0.039 -1.140 3.298 0.753 16.221 34.530 -3.682 0.030 2.532 25.645 -1.190 38.052 5 AA_U8A9:U8A9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A A 9 1_555 B U 8 1_555 A A 10 1_555 B U 7 1_555 0.143 -1.335 3.198 -0.154 10.284 30.662 -4.067 -0.282 2.624 18.796 0.282 32.301 6 AA_A9A10:U7U8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A A 10 1_555 B U 7 1_555 A G 11 1_555 B C 6 1_555 0.179 -1.806 3.366 2.320 10.019 29.390 -5.179 0.086 2.629 19.028 -4.406 31.100 7 AA_A10G11:C6U7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A G 11 1_555 B C 6 1_555 A U 12 1_555 B A 5 1_555 -0.597 -1.430 3.174 -0.382 4.452 33.890 -3.098 0.959 2.974 7.596 0.652 34.175 8 AA_G11U12:A5C6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 A U 12 1_555 B A 5 1_555 A C 13 1_555 B LCG 4 1_555 0.609 -1.408 3.113 0.824 3.340 30.441 -3.279 -1.002 2.960 6.335 -1.562 30.630 9 AA_U12C13:LCG4A5_BB A 12 ? B 5 ? A 13 ? B 4 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' 2104708 1 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6C8E _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9OL3 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.020729 _atom_sites.fract_transf_matrix[1][2] 0.011968 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023936 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012097 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 0.2156 H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 0.0030 MG 12 12 5.4265 2.8275 2.1759 79.2611 1.2283 0.3808 2.3099 7.1937 0.8594 N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 -11.5379 O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 0.2508 P 15 15 6.4348 1.9067 4.1793 27.1570 1.7801 0.5260 1.4909 68.1645 1.1150 # loop_ #