HEADER DNA BINDING PROTEIN 13-MAY-25 9OM8 TITLE CRYSTAL STRUCTURE OF PPRA S-F FILAMENT FROM DEINOCOCCUS RADIODURANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN PPRA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PLEIOTROPIC PROTEIN PROMOTING DNA REPAIR; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: 1-8 DELETION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS R1 = ATCC 13939 = DSM SOURCE 3 20539; SOURCE 4 ORGANISM_TAXID: 243230; SOURCE 5 STRAIN: R1; SOURCE 6 ATCC: ATCC 13939; SOURCE 7 GENE: PPRA, DR_A0346; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PPRA, DEINOCOCCUS, DEINOCOCCUS RADIODURANS, D. RADIODURANS, DNA KEYWDS 2 REPAIR, DNA BINDING PROTEIN, GENOME REASSEMBLY, SELF-ASSEMBLY, KEYWDS 3 PROTEIN FILAMENT EXPDTA X-RAY DIFFRACTION AUTHOR R.SZABLA,M.S.JUNOP,K.WOOD REVDAT 1 28-MAY-25 9OM8 0 JRNL AUTH R.SZABLA,M.S.JUNOP JRNL TITL SELF-ASSEMBLY OF PPRA FROM D.RADIODURANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 25114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8600 - 5.8800 0.86 2626 141 0.1984 0.2270 REMARK 3 2 5.8800 - 4.6700 0.90 2669 117 0.1956 0.2352 REMARK 3 3 4.6700 - 4.0800 0.91 2636 121 0.1808 0.2542 REMARK 3 4 4.0800 - 3.7100 0.90 2627 115 0.1990 0.2455 REMARK 3 5 3.7100 - 3.4400 0.91 2641 117 0.1945 0.2557 REMARK 3 6 3.4400 - 3.2400 0.92 2684 143 0.2443 0.3060 REMARK 3 7 3.2400 - 3.0800 0.93 2663 165 0.2461 0.3230 REMARK 3 8 3.0800 - 2.9500 0.94 2661 160 0.2487 0.3243 REMARK 3 9 2.9500 - 2.8300 0.93 2694 134 0.2625 0.3846 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.414 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.734 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7575 REMARK 3 ANGLE : 1.269 10281 REMARK 3 CHIRALITY : 0.047 1153 REMARK 3 PLANARITY : 0.013 1367 REMARK 3 DIHEDRAL : 17.196 2646 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9OM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1000295842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS BUILD 20241002 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25122 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.830 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.26200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.21.2_5419 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: FLAT RECTANGULAR PRISMS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 UL OF PROTEIN SOLUTION WAS MIXED REMARK 280 WITH 1.0 UL OF CRYSTALLIZATION SOLUTION AND HUNG UPSIDE-DOWN IN REMARK 280 A SEALED CHAMBER CONTAINING 1ML OF WELL SOLUTION. | PROTEIN REMARK 280 SOLUTION: 3.5 MG/ML PPRA (117 UM), 150MM KCL, 20MM TRIS, PH 7.5 | REMARK 280 CRYSTALLIZATION SOLUTION: 0.2M LICL, 20% (W/V) PEG 3350 | WELL REMARK 280 SOLUTION: 1.4 M (NH4)2SO4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 149.42000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.24350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 149.42000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.24350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXADECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 273.16016 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 85.99877 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 572.00016 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 85.99877 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 845.16031 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 171.99753 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 44.48700 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 273.16016 REMARK 350 BIOMT2 6 0.000000 1.000000 0.000000 44.48700 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 85.99877 REMARK 350 BIOMT1 7 -1.000000 0.000000 0.000000 572.00016 REMARK 350 BIOMT2 7 0.000000 1.000000 0.000000 44.48700 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 85.99877 REMARK 350 BIOMT1 8 -1.000000 0.000000 0.000000 845.16031 REMARK 350 BIOMT2 8 0.000000 1.000000 0.000000 44.48700 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 171.99753 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 9 1.000000 0.000000 0.000000 149.42000 REMARK 350 BIOMT2 9 0.000000 1.000000 0.000000 -22.24350 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 10 1.000000 0.000000 0.000000 -123.74016 REMARK 350 BIOMT2 10 0.000000 1.000000 0.000000 -22.24350 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 -85.99877 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 695.74031 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 -22.24350 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 171.99753 REMARK 350 BIOMT1 12 -1.000000 0.000000 0.000000 422.58016 REMARK 350 BIOMT2 12 0.000000 1.000000 0.000000 -22.24350 REMARK 350 BIOMT3 12 0.000000 0.000000 -1.000000 85.99877 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 13 1.000000 0.000000 0.000000 149.42000 REMARK 350 BIOMT2 13 0.000000 1.000000 0.000000 22.24350 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 14 1.000000 0.000000 0.000000 -123.74016 REMARK 350 BIOMT2 14 0.000000 1.000000 0.000000 22.24350 REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 -85.99877 REMARK 350 BIOMT1 15 -1.000000 0.000000 0.000000 695.74031 REMARK 350 BIOMT2 15 0.000000 1.000000 0.000000 22.24350 REMARK 350 BIOMT3 15 0.000000 0.000000 -1.000000 171.99753 REMARK 350 BIOMT1 16 -1.000000 0.000000 0.000000 422.58016 REMARK 350 BIOMT2 16 0.000000 1.000000 0.000000 22.24350 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 85.99877 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 8 REMARK 465 GLN A 9 REMARK 465 THR A 10 REMARK 465 HIS A 216 REMARK 465 ALA A 217 REMARK 465 GLY A 218 REMARK 465 ALA A 219 REMARK 465 LYS A 220 REMARK 465 ALA A 221 REMARK 465 ASN A 222 REMARK 465 ARG A 282 REMARK 465 GLU A 283 REMARK 465 SER A 284 REMARK 465 GLY B 8 REMARK 465 GLN B 9 REMARK 465 THR B 10 REMARK 465 ALA B 214 REMARK 465 ARG B 215 REMARK 465 HIS B 216 REMARK 465 ALA B 217 REMARK 465 GLY B 218 REMARK 465 ALA B 219 REMARK 465 LYS B 220 REMARK 465 ALA B 221 REMARK 465 GLY B 280 REMARK 465 LEU B 281 REMARK 465 ARG B 282 REMARK 465 GLU B 283 REMARK 465 SER B 284 REMARK 465 GLY C 8 REMARK 465 GLN C 9 REMARK 465 THR C 10 REMARK 465 ASP C 205 REMARK 465 GLY C 206 REMARK 465 MET C 207 REMARK 465 LEU C 208 REMARK 465 GLY C 209 REMARK 465 ALA C 210 REMARK 465 LEU C 211 REMARK 465 LEU C 212 REMARK 465 GLY C 213 REMARK 465 ALA C 214 REMARK 465 ARG C 215 REMARK 465 HIS C 216 REMARK 465 ALA C 217 REMARK 465 GLY C 218 REMARK 465 ALA C 219 REMARK 465 LYS C 220 REMARK 465 ALA C 221 REMARK 465 ASN C 222 REMARK 465 LEU C 223 REMARK 465 HIS C 279 REMARK 465 GLY C 280 REMARK 465 LEU C 281 REMARK 465 ARG C 282 REMARK 465 GLU C 283 REMARK 465 SER C 284 REMARK 465 GLY D 8 REMARK 465 GLN D 9 REMARK 465 THR D 10 REMARK 465 ILE D 189 REMARK 465 LYS D 190 REMARK 465 ASP D 191 REMARK 465 ARG D 192 REMARK 465 ALA D 193 REMARK 465 PHE D 194 REMARK 465 GLN D 195 REMARK 465 ARG D 196 REMARK 465 GLU D 197 REMARK 465 LEU D 198 REMARK 465 MET D 199 REMARK 465 ARG D 200 REMARK 465 ARG D 201 REMARK 465 SER D 202 REMARK 465 GLU D 203 REMARK 465 LYS D 204 REMARK 465 ASP D 205 REMARK 465 GLY D 206 REMARK 465 MET D 207 REMARK 465 LEU D 208 REMARK 465 GLY D 209 REMARK 465 ALA D 210 REMARK 465 LEU D 211 REMARK 465 LEU D 212 REMARK 465 GLY D 213 REMARK 465 ALA D 214 REMARK 465 ARG D 215 REMARK 465 HIS D 216 REMARK 465 ALA D 217 REMARK 465 GLY D 218 REMARK 465 ALA D 219 REMARK 465 LYS D 220 REMARK 465 ALA D 221 REMARK 465 ASN D 222 REMARK 465 SER D 274 REMARK 465 GLU D 275 REMARK 465 VAL D 276 REMARK 465 LEU D 277 REMARK 465 ARG D 278 REMARK 465 HIS D 279 REMARK 465 GLY D 280 REMARK 465 LEU D 281 REMARK 465 ARG D 282 REMARK 465 GLU D 283 REMARK 465 SER D 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 188 OG REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 ASP A 191 CG OD1 OD2 REMARK 470 PHE A 194 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 198 CG CD1 CD2 REMARK 470 ARG A 200 CG CD NE CZ NH1 NH2 REMARK 470 SER A 202 OG REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 ASP A 205 CG OD1 OD2 REMARK 470 LEU A 208 CG CD1 CD2 REMARK 470 LEU A 212 CG CD1 CD2 REMARK 470 ARG A 215 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 223 CG CD1 CD2 REMARK 470 ASP B 11 CG OD1 OD2 REMARK 470 ARG B 196 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 197 CG CD OE1 OE2 REMARK 470 LEU B 198 CG CD1 CD2 REMARK 470 ARG B 200 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 201 CG CD NE CZ NH1 NH2 REMARK 470 SER B 202 OG REMARK 470 GLU B 203 CG CD OE1 OE2 REMARK 470 LYS B 204 CG CD CE NZ REMARK 470 ASP B 205 CG OD1 OD2 REMARK 470 LEU B 212 CG CD1 CD2 REMARK 470 HIS B 279 CG ND1 CD2 CE1 NE2 REMARK 470 ASP C 191 CG OD1 OD2 REMARK 470 ARG C 192 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 194 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN C 195 CG CD OE1 NE2 REMARK 470 ARG C 196 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 197 CG CD OE1 OE2 REMARK 470 LEU C 198 CG CD1 CD2 REMARK 470 MET C 199 CG SD CE REMARK 470 ARG C 200 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 201 CG CD NE CZ NH1 NH2 REMARK 470 SER C 202 OG REMARK 470 GLU C 203 CG CD OE1 OE2 REMARK 470 LYS C 204 CG CD CE NZ REMARK 470 SER D 179 OG REMARK 470 LYS D 180 CG CD CE NZ REMARK 470 LYS D 184 CG CD CE NZ REMARK 470 VAL D 185 CG1 CG2 REMARK 470 ILE D 186 CG1 CG2 CD1 REMARK 470 SER D 188 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 38 178.96 -59.06 REMARK 500 ALA A 105 86.35 -164.83 REMARK 500 ARG A 140 -107.06 -89.49 REMARK 500 ALA A 187 -56.58 169.05 REMARK 500 LYS A 204 -77.41 -86.87 REMARK 500 MET A 207 -70.07 -86.72 REMARK 500 SER B 90 -7.62 -59.63 REMARK 500 ALA B 105 79.76 -162.59 REMARK 500 ARG B 140 -106.93 -82.65 REMARK 500 ALA B 172 105.39 -165.04 REMARK 500 SER B 173 170.23 -59.94 REMARK 500 ASP B 205 21.38 -140.52 REMARK 500 GLU C 37 139.31 71.39 REMARK 500 ALA C 38 -73.42 -165.97 REMARK 500 ASP C 39 17.52 -172.93 REMARK 500 ALA C 40 -60.69 62.45 REMARK 500 SER C 86 -59.71 -122.68 REMARK 500 ALA C 105 72.97 -164.50 REMARK 500 LEU C 127 154.03 -40.05 REMARK 500 ARG C 140 -72.94 -97.29 REMARK 500 ALA D 105 88.99 -168.05 REMARK 500 LEU D 129 -4.69 -57.75 REMARK 500 ARG D 140 -111.07 -71.36 REMARK 500 GLU D 228 2.03 -63.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 201 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9OM8 A 9 284 UNP O32504 PPRA_DEIRA 25 300 DBREF 9OM8 B 9 284 UNP O32504 PPRA_DEIRA 25 300 DBREF 9OM8 C 9 284 UNP O32504 PPRA_DEIRA 25 300 DBREF 9OM8 D 9 284 UNP O32504 PPRA_DEIRA 25 300 SEQADV 9OM8 GLY A 8 UNP O32504 EXPRESSION TAG SEQADV 9OM8 LYS A 180 UNP O32504 ASP 196 ENGINEERED MUTATION SEQADV 9OM8 LYS A 184 UNP O32504 ASP 200 ENGINEERED MUTATION SEQADV 9OM8 GLY B 8 UNP O32504 EXPRESSION TAG SEQADV 9OM8 LYS B 180 UNP O32504 ASP 196 ENGINEERED MUTATION SEQADV 9OM8 LYS B 184 UNP O32504 ASP 200 ENGINEERED MUTATION SEQADV 9OM8 GLY C 8 UNP O32504 EXPRESSION TAG SEQADV 9OM8 LYS C 180 UNP O32504 ASP 196 ENGINEERED MUTATION SEQADV 9OM8 LYS C 184 UNP O32504 ASP 200 ENGINEERED MUTATION SEQADV 9OM8 GLY D 8 UNP O32504 EXPRESSION TAG SEQADV 9OM8 LYS D 180 UNP O32504 ASP 196 ENGINEERED MUTATION SEQADV 9OM8 LYS D 184 UNP O32504 ASP 200 ENGINEERED MUTATION SEQRES 1 A 277 GLY GLN THR ASP GLY ILE TYR ALA ALA PHE ASP THR LEU SEQRES 2 A 277 MET SER THR ALA GLY VAL ASP SER GLN ILE ALA ALA LEU SEQRES 3 A 277 ALA ALA SER GLU ALA ASP ALA GLY THR LEU ASP ALA ALA SEQRES 4 A 277 LEU THR GLN SER LEU GLN GLU ALA GLN GLY ARG TRP GLY SEQRES 5 A 277 LEU GLY LEU HIS HIS LEU ARG HIS GLU ALA ARG LEU THR SEQRES 6 A 277 ASP ASP GLY ASP ILE GLU ILE LEU THR ASP GLY ARG PRO SEQRES 7 A 277 SER ALA ARG VAL SER GLU GLY PHE GLY ALA LEU ALA GLN SEQRES 8 A 277 ALA TYR ALA PRO MET GLN ALA LEU ASP GLU ARG GLY LEU SEQRES 9 A 277 SER GLN TRP ALA ALA LEU GLY GLU GLY TYR ARG ALA PRO SEQRES 10 A 277 GLY ASP LEU PRO LEU ALA GLN LEU LYS VAL LEU ILE GLU SEQRES 11 A 277 HIS ALA ARG ASP PHE GLU THR ASP TRP SER ALA GLY ARG SEQRES 12 A 277 GLY GLU THR PHE GLN ARG VAL TRP ARG LYS GLY ASP THR SEQRES 13 A 277 LEU PHE VAL GLU VAL ALA ARG PRO ALA SER ALA GLU ALA SEQRES 14 A 277 ALA LEU SER LYS ALA ALA TRP LYS VAL ILE ALA SER ILE SEQRES 15 A 277 LYS ASP ARG ALA PHE GLN ARG GLU LEU MET ARG ARG SER SEQRES 16 A 277 GLU LYS ASP GLY MET LEU GLY ALA LEU LEU GLY ALA ARG SEQRES 17 A 277 HIS ALA GLY ALA LYS ALA ASN LEU ALA GLN LEU PRO GLU SEQRES 18 A 277 ALA HIS PHE THR VAL GLN ALA PHE VAL GLN THR LEU SER SEQRES 19 A 277 GLY ALA ALA ALA ARG ASN ALA GLU GLU TYR ARG ALA ALA SEQRES 20 A 277 LEU LYS THR ALA ALA ALA ALA LEU GLU GLU TYR GLN GLY SEQRES 21 A 277 VAL THR THR ARG GLN LEU SER GLU VAL LEU ARG HIS GLY SEQRES 22 A 277 LEU ARG GLU SER SEQRES 1 B 277 GLY GLN THR ASP GLY ILE TYR ALA ALA PHE ASP THR LEU SEQRES 2 B 277 MET SER THR ALA GLY VAL ASP SER GLN ILE ALA ALA LEU SEQRES 3 B 277 ALA ALA SER GLU ALA ASP ALA GLY THR LEU ASP ALA ALA SEQRES 4 B 277 LEU THR GLN SER LEU GLN GLU ALA GLN GLY ARG TRP GLY SEQRES 5 B 277 LEU GLY LEU HIS HIS LEU ARG HIS GLU ALA ARG LEU THR SEQRES 6 B 277 ASP ASP GLY ASP ILE GLU ILE LEU THR ASP GLY ARG PRO SEQRES 7 B 277 SER ALA ARG VAL SER GLU GLY PHE GLY ALA LEU ALA GLN SEQRES 8 B 277 ALA TYR ALA PRO MET GLN ALA LEU ASP GLU ARG GLY LEU SEQRES 9 B 277 SER GLN TRP ALA ALA LEU GLY GLU GLY TYR ARG ALA PRO SEQRES 10 B 277 GLY ASP LEU PRO LEU ALA GLN LEU LYS VAL LEU ILE GLU SEQRES 11 B 277 HIS ALA ARG ASP PHE GLU THR ASP TRP SER ALA GLY ARG SEQRES 12 B 277 GLY GLU THR PHE GLN ARG VAL TRP ARG LYS GLY ASP THR SEQRES 13 B 277 LEU PHE VAL GLU VAL ALA ARG PRO ALA SER ALA GLU ALA SEQRES 14 B 277 ALA LEU SER LYS ALA ALA TRP LYS VAL ILE ALA SER ILE SEQRES 15 B 277 LYS ASP ARG ALA PHE GLN ARG GLU LEU MET ARG ARG SER SEQRES 16 B 277 GLU LYS ASP GLY MET LEU GLY ALA LEU LEU GLY ALA ARG SEQRES 17 B 277 HIS ALA GLY ALA LYS ALA ASN LEU ALA GLN LEU PRO GLU SEQRES 18 B 277 ALA HIS PHE THR VAL GLN ALA PHE VAL GLN THR LEU SER SEQRES 19 B 277 GLY ALA ALA ALA ARG ASN ALA GLU GLU TYR ARG ALA ALA SEQRES 20 B 277 LEU LYS THR ALA ALA ALA ALA LEU GLU GLU TYR GLN GLY SEQRES 21 B 277 VAL THR THR ARG GLN LEU SER GLU VAL LEU ARG HIS GLY SEQRES 22 B 277 LEU ARG GLU SER SEQRES 1 C 277 GLY GLN THR ASP GLY ILE TYR ALA ALA PHE ASP THR LEU SEQRES 2 C 277 MET SER THR ALA GLY VAL ASP SER GLN ILE ALA ALA LEU SEQRES 3 C 277 ALA ALA SER GLU ALA ASP ALA GLY THR LEU ASP ALA ALA SEQRES 4 C 277 LEU THR GLN SER LEU GLN GLU ALA GLN GLY ARG TRP GLY SEQRES 5 C 277 LEU GLY LEU HIS HIS LEU ARG HIS GLU ALA ARG LEU THR SEQRES 6 C 277 ASP ASP GLY ASP ILE GLU ILE LEU THR ASP GLY ARG PRO SEQRES 7 C 277 SER ALA ARG VAL SER GLU GLY PHE GLY ALA LEU ALA GLN SEQRES 8 C 277 ALA TYR ALA PRO MET GLN ALA LEU ASP GLU ARG GLY LEU SEQRES 9 C 277 SER GLN TRP ALA ALA LEU GLY GLU GLY TYR ARG ALA PRO SEQRES 10 C 277 GLY ASP LEU PRO LEU ALA GLN LEU LYS VAL LEU ILE GLU SEQRES 11 C 277 HIS ALA ARG ASP PHE GLU THR ASP TRP SER ALA GLY ARG SEQRES 12 C 277 GLY GLU THR PHE GLN ARG VAL TRP ARG LYS GLY ASP THR SEQRES 13 C 277 LEU PHE VAL GLU VAL ALA ARG PRO ALA SER ALA GLU ALA SEQRES 14 C 277 ALA LEU SER LYS ALA ALA TRP LYS VAL ILE ALA SER ILE SEQRES 15 C 277 LYS ASP ARG ALA PHE GLN ARG GLU LEU MET ARG ARG SER SEQRES 16 C 277 GLU LYS ASP GLY MET LEU GLY ALA LEU LEU GLY ALA ARG SEQRES 17 C 277 HIS ALA GLY ALA LYS ALA ASN LEU ALA GLN LEU PRO GLU SEQRES 18 C 277 ALA HIS PHE THR VAL GLN ALA PHE VAL GLN THR LEU SER SEQRES 19 C 277 GLY ALA ALA ALA ARG ASN ALA GLU GLU TYR ARG ALA ALA SEQRES 20 C 277 LEU LYS THR ALA ALA ALA ALA LEU GLU GLU TYR GLN GLY SEQRES 21 C 277 VAL THR THR ARG GLN LEU SER GLU VAL LEU ARG HIS GLY SEQRES 22 C 277 LEU ARG GLU SER SEQRES 1 D 277 GLY GLN THR ASP GLY ILE TYR ALA ALA PHE ASP THR LEU SEQRES 2 D 277 MET SER THR ALA GLY VAL ASP SER GLN ILE ALA ALA LEU SEQRES 3 D 277 ALA ALA SER GLU ALA ASP ALA GLY THR LEU ASP ALA ALA SEQRES 4 D 277 LEU THR GLN SER LEU GLN GLU ALA GLN GLY ARG TRP GLY SEQRES 5 D 277 LEU GLY LEU HIS HIS LEU ARG HIS GLU ALA ARG LEU THR SEQRES 6 D 277 ASP ASP GLY ASP ILE GLU ILE LEU THR ASP GLY ARG PRO SEQRES 7 D 277 SER ALA ARG VAL SER GLU GLY PHE GLY ALA LEU ALA GLN SEQRES 8 D 277 ALA TYR ALA PRO MET GLN ALA LEU ASP GLU ARG GLY LEU SEQRES 9 D 277 SER GLN TRP ALA ALA LEU GLY GLU GLY TYR ARG ALA PRO SEQRES 10 D 277 GLY ASP LEU PRO LEU ALA GLN LEU LYS VAL LEU ILE GLU SEQRES 11 D 277 HIS ALA ARG ASP PHE GLU THR ASP TRP SER ALA GLY ARG SEQRES 12 D 277 GLY GLU THR PHE GLN ARG VAL TRP ARG LYS GLY ASP THR SEQRES 13 D 277 LEU PHE VAL GLU VAL ALA ARG PRO ALA SER ALA GLU ALA SEQRES 14 D 277 ALA LEU SER LYS ALA ALA TRP LYS VAL ILE ALA SER ILE SEQRES 15 D 277 LYS ASP ARG ALA PHE GLN ARG GLU LEU MET ARG ARG SER SEQRES 16 D 277 GLU LYS ASP GLY MET LEU GLY ALA LEU LEU GLY ALA ARG SEQRES 17 D 277 HIS ALA GLY ALA LYS ALA ASN LEU ALA GLN LEU PRO GLU SEQRES 18 D 277 ALA HIS PHE THR VAL GLN ALA PHE VAL GLN THR LEU SER SEQRES 19 D 277 GLY ALA ALA ALA ARG ASN ALA GLU GLU TYR ARG ALA ALA SEQRES 20 D 277 LEU LYS THR ALA ALA ALA ALA LEU GLU GLU TYR GLN GLY SEQRES 21 D 277 VAL THR THR ARG GLN LEU SER GLU VAL LEU ARG HIS GLY SEQRES 22 D 277 LEU ARG GLU SER HELIX 1 AA1 GLY A 12 THR A 23 1 12 HELIX 2 AA2 GLN A 29 SER A 36 1 8 HELIX 3 AA3 GLY A 41 GLY A 59 1 19 HELIX 4 AA4 GLU A 91 ALA A 101 1 11 HELIX 5 AA5 PRO A 102 GLN A 104 5 3 HELIX 6 AA6 PRO A 128 ALA A 139 1 12 HELIX 7 AA7 SER A 173 ILE A 189 1 17 HELIX 8 AA8 ASP A 191 GLY A 206 1 16 HELIX 9 AA9 GLY A 206 GLY A 213 1 8 HELIX 10 AB1 LEU A 226 HIS A 230 5 5 HELIX 11 AB2 SER A 241 ARG A 246 5 6 HELIX 12 AB3 ASN A 247 ARG A 278 1 32 HELIX 13 AB4 GLY B 12 THR B 23 1 12 HELIX 14 AB5 GLN B 29 SER B 36 1 8 HELIX 15 AB6 ASP B 39 GLY B 59 1 21 HELIX 16 AB7 GLY B 92 ALA B 101 1 10 HELIX 17 AB8 PRO B 102 GLN B 104 5 3 HELIX 18 AB9 PRO B 128 ALA B 139 1 12 HELIX 19 AC1 SER B 173 ILE B 189 1 17 HELIX 20 AC2 ASP B 191 GLY B 213 1 23 HELIX 21 AC3 LEU B 226 HIS B 230 5 5 HELIX 22 AC4 ALA B 243 ARG B 246 5 4 HELIX 23 AC5 ASN B 247 HIS B 279 1 33 HELIX 24 AC6 GLY C 12 SER C 22 1 11 HELIX 25 AC7 THR C 23 GLY C 25 5 3 HELIX 26 AC8 GLN C 29 ALA C 34 1 6 HELIX 27 AC9 ALA C 40 GLY C 59 1 20 HELIX 28 AD1 GLY C 92 ALA C 101 1 10 HELIX 29 AD2 PRO C 102 GLN C 104 5 3 HELIX 30 AD3 PRO C 128 ALA C 139 1 12 HELIX 31 AD4 ALA C 174 SER C 188 1 15 HELIX 32 AD5 ASP C 191 LYS C 204 1 14 HELIX 33 AD6 LEU C 226 HIS C 230 5 5 HELIX 34 AD7 ALA C 243 ARG C 246 5 4 HELIX 35 AD8 ASN C 247 ARG C 278 1 32 HELIX 36 AD9 GLY D 12 THR D 23 1 12 HELIX 37 AE1 GLN D 29 SER D 36 1 8 HELIX 38 AE2 ASP D 39 GLY D 59 1 21 HELIX 39 AE3 GLY D 92 ALA D 101 1 10 HELIX 40 AE4 ALA D 130 ALA D 139 1 10 HELIX 41 AE5 ARG D 150 GLU D 152 5 3 HELIX 42 AE6 SER D 173 SER D 188 1 16 HELIX 43 AE7 LEU D 226 HIS D 230 5 5 HELIX 44 AE8 ALA D 243 ARG D 246 5 4 HELIX 45 AE9 ASN D 247 LEU D 273 1 27 SHEET 1 AA1 3 HIS A 67 LEU A 71 0 SHEET 2 AA1 3 ILE A 77 THR A 81 -1 O LEU A 80 N GLU A 68 SHEET 3 AA1 3 ARG A 84 ARG A 88 -1 O SER A 86 N ILE A 79 SHEET 1 AA2 3 PHE A 142 GLU A 143 0 SHEET 2 AA2 3 PHE A 154 LYS A 160 -1 O ARG A 159 N PHE A 142 SHEET 3 AA2 3 SER A 147 ALA A 148 -1 N SER A 147 O GLN A 155 SHEET 1 AA3 4 PHE A 142 GLU A 143 0 SHEET 2 AA3 4 PHE A 154 LYS A 160 -1 O ARG A 159 N PHE A 142 SHEET 3 AA3 4 THR A 163 ALA A 169 -1 O PHE A 165 N TRP A 158 SHEET 4 AA3 4 ALA A 235 LEU A 240 -1 O LEU A 240 N LEU A 164 SHEET 1 AA4 3 HIS B 67 LEU B 71 0 SHEET 2 AA4 3 ILE B 77 THR B 81 -1 O LEU B 80 N GLU B 68 SHEET 3 AA4 3 ARG B 84 ARG B 88 -1 O ALA B 87 N ILE B 79 SHEET 1 AA5 3 PHE B 142 GLU B 143 0 SHEET 2 AA5 3 PHE B 154 LYS B 160 -1 O ARG B 159 N PHE B 142 SHEET 3 AA5 3 SER B 147 ALA B 148 -1 N SER B 147 O GLN B 155 SHEET 1 AA6 4 PHE B 142 GLU B 143 0 SHEET 2 AA6 4 PHE B 154 LYS B 160 -1 O ARG B 159 N PHE B 142 SHEET 3 AA6 4 THR B 163 ALA B 169 -1 O ALA B 169 N PHE B 154 SHEET 4 AA6 4 ALA B 235 SER B 241 -1 O GLN B 238 N VAL B 166 SHEET 1 AA7 3 HIS C 67 LEU C 71 0 SHEET 2 AA7 3 ILE C 77 THR C 81 -1 O LEU C 80 N GLU C 68 SHEET 3 AA7 3 ARG C 84 ARG C 88 -1 O ALA C 87 N ILE C 79 SHEET 1 AA8 3 PHE C 142 GLU C 143 0 SHEET 2 AA8 3 THR C 153 LYS C 160 -1 O ARG C 159 N PHE C 142 SHEET 3 AA8 3 SER C 147 GLY C 149 -1 N SER C 147 O GLN C 155 SHEET 1 AA9 4 PHE C 142 GLU C 143 0 SHEET 2 AA9 4 THR C 153 LYS C 160 -1 O ARG C 159 N PHE C 142 SHEET 3 AA9 4 THR C 163 ALA C 169 -1 O GLU C 167 N ARG C 156 SHEET 4 AA9 4 ALA C 235 SER C 241 -1 O GLN C 238 N VAL C 166 SHEET 1 AB1 3 HIS D 67 LEU D 71 0 SHEET 2 AB1 3 ILE D 77 THR D 81 -1 O GLU D 78 N ARG D 70 SHEET 3 AB1 3 ARG D 84 ARG D 88 -1 O ARG D 84 N THR D 81 SHEET 1 AB2 3 PHE D 142 GLU D 143 0 SHEET 2 AB2 3 PHE D 154 LYS D 160 -1 O ARG D 159 N PHE D 142 SHEET 3 AB2 3 SER D 147 ALA D 148 -1 N SER D 147 O GLN D 155 SHEET 1 AB3 4 PHE D 142 GLU D 143 0 SHEET 2 AB3 4 PHE D 154 LYS D 160 -1 O ARG D 159 N PHE D 142 SHEET 3 AB3 4 THR D 163 ALA D 169 -1 O PHE D 165 N TRP D 158 SHEET 4 AB3 4 ALA D 235 SER D 241 -1 O GLN D 238 N VAL D 166 CRYST1 298.840 44.487 89.751 90.00 106.63 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003346 0.000000 0.000999 0.00000 SCALE2 0.000000 0.022478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011628 0.00000 TER 1956 LEU A 281 TER 3894 HIS B 279 TER 5741 ARG C 278 TER 7453 LEU D 273 MASTER 468 0 0 45 40 0 0 6 7449 4 0 88 END