HEADER LIGASE, SIGNALING PROTEIN 06-JUN-25 9OZX TITLE CRYSTAL STRUCTURE OF ZNRF3 RING IN COMPLEX WITH UBCH5B COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE ZNRF3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RING FINGER PROTEIN 203,RING-TYPE E3 UBIQUITIN TRANSFERASE COMPND 5 ZNRF3,ZINC/RING FINGER PROTEIN 3; COMPND 6 EC: 2.3.2.27; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: ZNRF3 RING; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 D2; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME D2,E2 COMPND 13 UBIQUITIN-CONJUGATING ENZYME D2,UBIQUITIN CARRIER PROTEIN D2, COMPND 14 UBIQUITIN-CONJUGATING ENZYME E2(17)KB 2,UBIQUITIN-CONJUGATING ENZYME COMPND 15 E2-17 KDA 2,UBIQUITIN-PROTEIN LIGASE D2,P53-REGULATED UBIQUITIN- COMPND 16 CONJUGATING ENZYME 1; COMPND 17 EC: 2.3.2.23,2.3.2.24; COMPND 18 ENGINEERED: YES; COMPND 19 OTHER_DETAILS: UBCH5B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNRF3, KIAA1133, RNF203; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE E3 LIGASE, LIGASE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.PADALA,A.J.MIDDLETON,C.L.DAY REVDAT 1 17-JUN-26 9OZX 0 JRNL AUTH P.PADALA,C.ROSSIG,A.J.MIDDLETON,C.L.DAY JRNL TITL CRYSTAL STRUCTURE OF ZNRF3 RING IN COMPLEX WITH UBCH5B JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0500 - 6.1700 0.99 2713 150 0.2179 0.2253 REMARK 3 2 6.1600 - 4.9000 1.00 2752 148 0.2182 0.2023 REMARK 3 3 4.8900 - 4.2800 1.00 2743 123 0.1950 0.2196 REMARK 3 4 4.2800 - 3.8900 1.00 2753 131 0.2224 0.2605 REMARK 3 5 3.8900 - 3.6100 1.00 2736 133 0.2384 0.2778 REMARK 3 6 3.6100 - 3.4000 1.00 2790 134 0.2501 0.2329 REMARK 3 7 3.4000 - 3.2300 1.00 2692 156 0.2712 0.2592 REMARK 3 8 3.2300 - 3.0900 1.00 2734 146 0.2846 0.3223 REMARK 3 9 3.0900 - 2.9700 1.00 2714 144 0.2871 0.3244 REMARK 3 10 2.9700 - 2.8600 1.00 2728 140 0.2949 0.3370 REMARK 3 11 2.8600 - 2.7700 1.00 2798 127 0.2984 0.3169 REMARK 3 12 2.7700 - 2.7000 1.00 2692 145 0.3422 0.3488 REMARK 3 13 2.7000 - 2.6200 1.00 2754 132 0.3367 0.4136 REMARK 3 14 2.6200 - 2.5600 1.00 2750 130 0.3601 0.3929 REMARK 3 15 2.5600 - 2.5000 1.00 2716 176 0.3690 0.3700 REMARK 3 16 2.5000 - 2.4500 1.00 2696 141 0.3791 0.4430 REMARK 3 17 2.4500 - 2.4000 1.00 2719 157 0.3944 0.3502 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.368 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.023 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1892 REMARK 3 ANGLE : 0.962 2568 REMARK 3 CHIRALITY : 0.047 281 REMARK 3 PLANARITY : 0.008 332 REMARK 3 DIHEDRAL : 7.668 248 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -20.8045 11.9268 86.9939 REMARK 3 T TENSOR REMARK 3 T11: 0.5244 T22: 0.5034 REMARK 3 T33: 0.5020 T12: 0.0658 REMARK 3 T13: 0.1024 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.7965 L22: 0.4401 REMARK 3 L33: 0.8759 L12: -0.0664 REMARK 3 L13: 0.1107 L23: 0.4630 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: -0.2488 S13: 0.1000 REMARK 3 S21: -0.0554 S22: 0.0952 S23: 0.1202 REMARK 3 S31: 0.0355 S32: -0.0589 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9OZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1000295875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48893 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 41.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 76.82650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.35580 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 47.36767 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 76.82650 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 44.35580 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 47.36767 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 76.82650 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 44.35580 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.36767 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 76.82650 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 44.35580 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.36767 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 76.82650 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 44.35580 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.36767 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 76.82650 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 44.35580 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.36767 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 88.71160 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 94.73533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 88.71160 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 94.73533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 88.71160 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 94.73533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 88.71160 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 94.73533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 88.71160 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 94.73533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 88.71160 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 94.73533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 245 REMARK 465 GLY A 246 REMARK 465 PRO A 247 REMARK 465 GLY A 248 REMARK 465 LYS A 272 REMARK 465 GLY A 273 REMARK 465 ARG A 274 REMARK 465 ARG A 275 REMARK 465 GLU A 276 REMARK 465 GLY A 277 REMARK 465 SER A 278 REMARK 465 CYS A 279 REMARK 465 LYS A 341 REMARK 465 GLN B -3 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 GLY B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 15 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 253 CB PRO A 322 10456 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 250 -37.57 70.33 REMARK 500 MET A 251 16.21 -149.74 REMARK 500 ASN A 252 -31.18 71.23 REMARK 500 ARG A 253 -28.83 49.68 REMARK 500 ALA A 281 -30.50 -135.61 REMARK 500 HIS A 332 -61.46 -90.99 REMARK 500 ASP B 16 81.47 -163.39 REMARK 500 GLN B 46 -52.14 68.00 REMARK 500 ILE B 88 -6.82 -55.00 REMARK 500 ARG B 90 -140.31 -92.31 REMARK 500 SER B 91 150.51 -40.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 292 CYS A 293 147.76 REMARK 500 TYR B 45 GLN B 46 142.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 293 SG REMARK 620 2 CYS A 296 SG 98.1 REMARK 620 3 HIS A 316 ND1 96.4 92.8 REMARK 620 4 CYS A 319 SG 130.4 116.4 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 311 SG REMARK 620 2 HIS A 313 ND1 103.7 REMARK 620 3 CYS A 330 SG 111.1 115.0 REMARK 620 4 CYS A 333 SG 105.1 112.4 109.0 REMARK 620 N 1 2 3 DBREF 9OZX A 249 341 UNP Q9ULT6 ZNRF3_HUMAN 249 341 DBREF 9OZX B 1 147 UNP P62837 UB2D2_HUMAN 1 147 SEQADV 9OZX GLN A 245 UNP Q9ULT6 EXPRESSION TAG SEQADV 9OZX GLY A 246 UNP Q9ULT6 EXPRESSION TAG SEQADV 9OZX PRO A 247 UNP Q9ULT6 EXPRESSION TAG SEQADV 9OZX GLY A 248 UNP Q9ULT6 EXPRESSION TAG SEQADV 9OZX GLN B -3 UNP P62837 EXPRESSION TAG SEQADV 9OZX GLY B -2 UNP P62837 EXPRESSION TAG SEQADV 9OZX PRO B -1 UNP P62837 EXPRESSION TAG SEQADV 9OZX GLY B 0 UNP P62837 EXPRESSION TAG SEQRES 1 A 97 GLN GLY PRO GLY ASN SER MET ASN ARG LEU ALA VAL GLN SEQRES 2 A 97 ALA LEU GLU LYS MET GLU THR ARG LYS PHE ASN SER LYS SEQRES 3 A 97 SER LYS GLY ARG ARG GLU GLY SER CYS GLY ALA LEU ASP SEQRES 4 A 97 THR LEU SER SER SER SER THR SER ASP CYS ALA ILE CYS SEQRES 5 A 97 LEU GLU LYS TYR ILE ASP GLY GLU GLU LEU ARG VAL ILE SEQRES 6 A 97 PRO CYS THR HIS ARG PHE HIS ARG LYS CYS VAL ASP PRO SEQRES 7 A 97 TRP LEU LEU GLN HIS HIS THR CYS PRO HIS CYS ARG HIS SEQRES 8 A 97 ASN ILE ILE GLU GLN LYS SEQRES 1 B 151 GLN GLY PRO GLY MET ALA LEU LYS ARG ILE HIS LYS GLU SEQRES 2 B 151 LEU ASN ASP LEU ALA ARG ASP PRO PRO ALA GLN CYS SER SEQRES 3 B 151 ALA GLY PRO VAL GLY ASP ASP MET PHE HIS TRP GLN ALA SEQRES 4 B 151 THR ILE MET GLY PRO ASN ASP SER PRO TYR GLN GLY GLY SEQRES 5 B 151 VAL PHE PHE LEU THR ILE HIS PHE PRO THR ASP TYR PRO SEQRES 6 B 151 PHE LYS PRO PRO LYS VAL ALA PHE THR THR ARG ILE TYR SEQRES 7 B 151 HIS PRO ASN ILE ASN SER ASN GLY SER ILE CYS LEU ASP SEQRES 8 B 151 ILE LEU ARG SER GLN TRP SER PRO ALA LEU THR ILE SER SEQRES 9 B 151 LYS VAL LEU LEU SER ILE CYS SER LEU LEU CYS ASP PRO SEQRES 10 B 151 ASN PRO ASP ASP PRO LEU VAL PRO GLU ILE ALA ARG ILE SEQRES 11 B 151 TYR LYS THR ASP ARG GLU LYS TYR ASN ARG ILE ALA ARG SEQRES 12 B 151 GLU TRP THR GLN LYS TYR ALA MET HET ZN A 401 1 HET ZN A 402 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) HELIX 1 AA1 LEU A 254 MET A 262 1 9 HELIX 2 AA2 ARG A 317 HIS A 328 1 12 HELIX 3 AA3 ALA B 2 ASP B 16 1 15 HELIX 4 AA4 ASP B 59 LYS B 63 5 5 HELIX 5 AA5 LEU B 86 ARG B 90 5 5 HELIX 6 AA6 THR B 98 ASP B 112 1 15 HELIX 7 AA7 VAL B 120 ASP B 130 1 11 HELIX 8 AA8 ASP B 130 ALA B 146 1 17 SHEET 1 AA1 3 GLU A 263 LYS A 266 0 SHEET 2 AA1 3 GLU A 305 VAL A 308 -1 O LEU A 306 N ARG A 265 SHEET 3 AA1 3 ARG A 314 HIS A 316 -1 O PHE A 315 N ARG A 307 SHEET 1 AA2 4 CYS B 21 VAL B 26 0 SHEET 2 AA2 4 ASP B 29 MET B 38 -1 O HIS B 32 N VAL B 26 SHEET 3 AA2 4 VAL B 49 HIS B 55 -1 O PHE B 50 N ILE B 37 SHEET 4 AA2 4 LYS B 66 PHE B 69 -1 O ALA B 68 N THR B 53 LINK SG CYS A 293 ZN ZN A 402 1555 1555 2.33 LINK SG CYS A 296 ZN ZN A 402 1555 1555 2.37 LINK SG CYS A 311 ZN ZN A 401 1555 1555 2.27 LINK ND1 HIS A 313 ZN ZN A 401 1555 1555 1.99 LINK ND1 HIS A 316 ZN ZN A 402 1555 1555 2.26 LINK SG CYS A 319 ZN ZN A 402 1555 1555 2.34 LINK SG CYS A 330 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 333 ZN ZN A 401 1555 1555 2.21 CRYST1 153.653 153.653 142.103 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006508 0.003757 0.000000 0.00000 SCALE2 0.000000 0.007515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007037 0.00000 CONECT 276 1848 CONECT 295 1848 CONECT 418 1847 CONECT 432 1847 CONECT 464 1848 CONECT 493 1848 CONECT 587 1847 CONECT 610 1847 CONECT 1847 418 432 587 610 CONECT 1848 276 295 464 493 MASTER 387 0 2 8 7 0 0 6 1846 2 10 20 END