HEADER PLANT PROTEIN 09-JUN-25 9P15 TITLE THAUMATIN ROOM-TEMPERATURE IN-SITU, SHIPPED COMPND MOL_ID: 1; COMPND 2 MOLECULE: THAUMATIN I; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THAUMATIN-1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THAUMATOCOCCUS DANIELLII; SOURCE 3 ORGANISM_TAXID: 4621 KEYWDS MONOMER, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.E.SNELL,C.S.CAMPOMIZZI,H.MIKOLAJEK,J.SANDY,J.SANCHEZ-WEATHERBY, AUTHOR 2 G.R.BUDZISZEWSKI,M.A.HOUGH,S.E.J.BOWMAN REVDAT 1 27-AUG-25 9P15 0 JRNL AUTH C.S.CAMPOMIZZI,M.E.SNELL,H.MIKOLAJEK,J.SANDY, JRNL AUTH 2 J.SANCHEZ-WEATHERBY,G.R.BUDZISZEWSKI,S.RUSSI,R.HOWELLS JR., JRNL AUTH 3 A.COHEN,M.A.HOUGH,S.E.J.BOWMAN JRNL TITL DOES CROSSING THE POND AFFECT CRYSTAL QUALITY? JRNL REF BIORXIV 2025 JRNL REFN ISSN 2692-8205 JRNL PMID 40666996 JRNL DOI 10.1101/2025.06.12.659325 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.974 REMARK 3 FREE R VALUE TEST SET COUNT : 1539 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2152 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1519 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45600 REMARK 3 B22 (A**2) : 0.45600 REMARK 3 B33 (A**2) : -0.91200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.874 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1606 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1425 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2198 ; 1.935 ; 1.796 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3304 ; 0.702 ; 1.728 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 221 ; 6.918 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 9 ; 6.900 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 235 ;12.341 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 244 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1959 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 379 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 308 ; 0.251 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 60 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 841 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 116 ; 0.476 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 839 ; 2.057 ; 2.052 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 839 ; 2.052 ; 2.051 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1051 ; 2.938 ; 3.667 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1052 ; 2.943 ; 3.669 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 767 ; 3.583 ; 2.370 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 766 ; 3.585 ; 2.370 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1139 ; 5.427 ; 4.174 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1139 ; 5.427 ; 4.174 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9P15 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1000296379. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-24 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : VMXI REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7749 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2.MULTIPLEX REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31026 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 54.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 8.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 54.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 0.02800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.59 M DI-AMMONIUM TARTRATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.22950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.10100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.10100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.61475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.10100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.10100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.84425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.10100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.10100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.61475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.10100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.10100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 112.84425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.22950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 207 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 76 CZ NH1 NH2 REMARK 470 LYS A 78 CD CE NZ REMARK 470 ARG A 79 CD NE CZ NH1 NH2 REMARK 470 LYS A 97 CE NZ REMARK 470 ARG A 119 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 139 NZ REMARK 470 LYS A 163 CD CE NZ REMARK 470 LYS A 187 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS A 71 SG CYS A 77 1.20 REMARK 500 HG1 THR A 160 O HOH A 404 1.57 REMARK 500 O HOH A 503 O HOH A 513 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 168 CD GLU A 168 OE2 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 29 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 171 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 25 -139.62 55.16 REMARK 500 CYS A 71 73.58 -112.65 REMARK 500 REMARK 500 REMARK: NULL DBREF 9P15 A 1 207 UNP P02883 THM1_THADA 23 229 SEQRES 1 A 207 ALA THR PHE GLU ILE VAL ASN ARG CYS SER TYR THR VAL SEQRES 2 A 207 TRP ALA ALA ALA SER LYS GLY ASP ALA ALA LEU ASP ALA SEQRES 3 A 207 GLY GLY ARG GLN LEU ASN SER GLY GLU SER TRP THR ILE SEQRES 4 A 207 ASN VAL GLU PRO GLY THR ASN GLY GLY LYS ILE TRP ALA SEQRES 5 A 207 ARG THR ASP CYS TYR PHE ASP ASP SER GLY SER GLY ILE SEQRES 6 A 207 CYS LYS THR GLY ASP CYS GLY GLY LEU LEU ARG CYS LYS SEQRES 7 A 207 ARG PHE GLY ARG PRO PRO THR THR LEU ALA GLU PHE SER SEQRES 8 A 207 LEU ASN GLN TYR GLY LYS ASP TYR ILE ASP ILE SER ASN SEQRES 9 A 207 ILE LYS GLY PHE ASN VAL PRO MET ASP PHE SER PRO THR SEQRES 10 A 207 THR ARG GLY CYS ARG GLY VAL ARG CYS ALA ALA ASP ILE SEQRES 11 A 207 VAL GLY GLN CYS PRO ALA LYS LEU LYS ALA PRO GLY GLY SEQRES 12 A 207 GLY CYS ASN ASP ALA CYS THR VAL PHE GLN THR SER GLU SEQRES 13 A 207 TYR CYS CYS THR THR GLY LYS CYS GLY PRO THR GLU TYR SEQRES 14 A 207 SER ARG PHE PHE LYS ARG LEU CYS PRO ASP ALA PHE SER SEQRES 15 A 207 TYR VAL LEU ASP LYS PRO THR THR VAL THR CYS PRO GLY SEQRES 16 A 207 SER SER ASN TYR ARG VAL THR PHE CYS PRO THR ALA HET TLA A 301 14 HETNAM TLA L(+)-TARTARIC ACID FORMUL 2 TLA C4 H6 O6 FORMUL 3 HOH *149(H2 O) HELIX 1 AA1 ASP A 129 CYS A 134 1 6 HELIX 2 AA2 PRO A 135 LYS A 139 5 5 HELIX 3 AA3 ASP A 147 GLN A 153 1 7 HELIX 4 AA4 THR A 154 CYS A 159 1 6 HELIX 5 AA5 THR A 167 CYS A 177 1 11 SHEET 1 AA1 5 SER A 36 ASN A 40 0 SHEET 2 AA1 5 THR A 2 ASN A 7 -1 N ILE A 5 O TRP A 37 SHEET 3 AA1 5 TYR A 199 PHE A 203 1 O VAL A 201 N VAL A 6 SHEET 4 AA1 5 MET A 112 PRO A 116 -1 N SER A 115 O ARG A 200 SHEET 5 AA1 5 VAL A 124 CYS A 126 -1 O VAL A 124 N PHE A 114 SHEET 1 AA2 6 ALA A 23 LEU A 31 0 SHEET 2 AA2 6 VAL A 13 SER A 18 -1 N VAL A 13 O LEU A 31 SHEET 3 AA2 6 GLY A 48 PHE A 58 -1 O LYS A 49 N SER A 18 SHEET 4 AA2 6 LEU A 87 GLN A 94 -1 O ALA A 88 N ILE A 50 SHEET 5 AA2 6 LYS A 97 SER A 103 -1 O LYS A 97 N GLN A 94 SHEET 6 AA2 6 ALA A 180 PHE A 181 1 O PHE A 181 N ILE A 102 SHEET 1 AA3 5 GLY A 64 THR A 68 0 SHEET 2 AA3 5 GLY A 48 PHE A 58 -1 N TYR A 57 O ILE A 65 SHEET 3 AA3 5 LEU A 87 GLN A 94 -1 O ALA A 88 N ILE A 50 SHEET 4 AA3 5 LYS A 97 SER A 103 -1 O LYS A 97 N GLN A 94 SHEET 5 AA3 5 VAL A 191 PRO A 194 -1 O VAL A 191 N ILE A 100 SSBOND 1 CYS A 9 CYS A 204 1555 1555 1.99 SSBOND 2 CYS A 56 CYS A 66 1555 1555 2.02 SSBOND 3 CYS A 71 CYS A 77 1555 1555 2.03 SSBOND 4 CYS A 121 CYS A 193 1555 1555 2.07 SSBOND 5 CYS A 126 CYS A 177 1555 1555 2.01 SSBOND 6 CYS A 134 CYS A 145 1555 1555 2.03 SSBOND 7 CYS A 149 CYS A 158 1555 1555 2.05 SSBOND 8 CYS A 159 CYS A 164 1555 1555 1.97 CISPEP 1 PRO A 83 PRO A 84 0 5.58 CRYST1 58.202 58.202 150.459 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017182 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017182 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006646 0.00000 TER 3049 THR A 206 HETATM 3050 O1 TLA A 301 47.364 -12.290 -13.324 1.00 23.20 O HETATM 3051 O11 TLA A 301 47.648 -12.454 -11.180 1.00 25.27 O HETATM 3052 C1 TLA A 301 47.770 -12.866 -12.333 1.00 26.97 C HETATM 3053 C2 TLA A 301 48.462 -14.230 -12.522 1.00 21.84 C HETATM 3054 O2 TLA A 301 48.796 -14.494 -13.886 1.00 19.10 O HETATM 3055 C3 TLA A 301 47.527 -15.322 -11.999 1.00 18.31 C HETATM 3056 O3 TLA A 301 46.302 -15.310 -12.706 1.00 18.97 O HETATM 3057 C4 TLA A 301 48.201 -16.684 -12.136 1.00 19.13 C HETATM 3058 O4 TLA A 301 47.752 -17.424 -13.033 1.00 18.23 O HETATM 3059 O41 TLA A 301 49.189 -16.901 -11.387 1.00 17.96 O HETATM 3060 H2 TLA A 301 49.292 -14.240 -11.982 1.00 21.41 H HETATM 3061 HA TLA A 301 49.186 -15.257 -13.924 0.00 18.80 H HETATM 3062 H3 TLA A 301 47.347 -15.152 -11.041 1.00 19.22 H HETATM 3063 HB TLA A 301 45.810 -15.928 -12.386 0.00 18.96 H HETATM 3064 O HOH A 401 19.091 0.166 -2.937 1.00 29.61 O HETATM 3065 O HOH A 402 16.109 -2.015 2.039 1.00 44.77 O HETATM 3066 O HOH A 403 8.520 -24.553 -3.363 1.00 42.53 O HETATM 3067 O HOH A 404 31.042 -19.351 11.997 1.00 42.50 O HETATM 3068 O HOH A 405 25.422 -28.155 -18.158 1.00 48.79 O HETATM 3069 O HOH A 406 21.107 -1.937 7.414 1.00 28.41 O HETATM 3070 O HOH A 407 25.271 -1.700 9.981 1.00 38.29 O HETATM 3071 O HOH A 408 32.597 -16.652 4.144 1.00 40.96 O HETATM 3072 O HOH A 409 37.049 -12.502 -12.398 1.00 31.48 O HETATM 3073 O HOH A 410 5.845 -13.603 6.083 1.00 42.83 O HETATM 3074 O HOH A 411 26.518 -1.073 -17.219 1.00 41.50 O HETATM 3075 O HOH A 412 8.771 -22.485 1.862 1.00 46.39 O HETATM 3076 O HOH A 413 25.023 -2.719 12.938 1.00 42.97 O HETATM 3077 O HOH A 414 7.448 -14.689 -5.994 1.00 23.88 O HETATM 3078 O HOH A 415 31.920 -4.397 -13.058 1.00 29.93 O HETATM 3079 O HOH A 416 16.485 -21.790 -18.277 1.00 43.23 O HETATM 3080 O HOH A 417 4.074 -7.901 -6.890 1.00 35.81 O HETATM 3081 O HOH A 418 20.805 -9.271 10.365 1.00 33.70 O HETATM 3082 O HOH A 419 29.249 -16.679 8.952 1.00 39.22 O HETATM 3083 O HOH A 420 25.655 -6.138 15.540 1.00 35.56 O HETATM 3084 O HOH A 421 22.165 -12.485 8.341 1.00 47.47 O HETATM 3085 O HOH A 422 24.105 -13.376 2.775 1.00 24.12 O HETATM 3086 O HOH A 423 14.331 -4.768 6.244 1.00 48.35 O HETATM 3087 O HOH A 424 15.884 -27.152 -11.484 1.00 44.63 O HETATM 3088 O HOH A 425 36.312 -16.823 -19.410 1.00 37.17 O HETATM 3089 O HOH A 426 23.989 -9.347 -26.512 1.00 19.87 O HETATM 3090 O HOH A 427 25.355 2.413 -3.115 1.00 48.63 O HETATM 3091 O HOH A 428 18.944 -5.573 0.595 1.00 21.19 O HETATM 3092 O HOH A 429 30.907 -8.223 4.297 1.00 20.09 O HETATM 3093 O HOH A 430 35.417 2.286 9.260 1.00 44.34 O HETATM 3094 O HOH A 431 25.154 -16.895 -24.082 1.00 28.67 O HETATM 3095 O HOH A 432 35.719 -28.585 -12.795 1.00 35.02 O HETATM 3096 O HOH A 433 18.423 -9.207 -23.640 1.00 15.57 O HETATM 3097 O HOH A 434 30.590 -14.383 16.862 1.00 29.82 O HETATM 3098 O HOH A 435 28.914 -2.743 8.802 1.00 17.95 O HETATM 3099 O HOH A 436 8.040 -3.131 1.026 1.00 41.11 O HETATM 3100 O HOH A 437 33.787 -12.695 -16.964 1.00 18.84 O HETATM 3101 O HOH A 438 27.122 5.725 2.353 1.00 47.31 O HETATM 3102 O HOH A 439 17.369 -3.247 -15.066 1.00 38.97 O HETATM 3103 O HOH A 440 21.523 -4.782 5.856 1.00 46.71 O HETATM 3104 O HOH A 441 34.736 2.575 12.951 1.00 45.74 O HETATM 3105 O HOH A 442 16.837 -5.222 -11.906 1.00 18.85 O HETATM 3106 O HOH A 443 4.669 -14.814 -9.832 1.00 35.44 O HETATM 3107 O HOH A 444 42.719 -7.366 9.765 1.00 18.91 O HETATM 3108 O HOH A 445 28.243 -17.344 -2.419 1.00 23.01 O HETATM 3109 O HOH A 446 22.116 -23.805 -18.875 1.00 31.76 O HETATM 3110 O HOH A 447 16.726 -0.458 -7.300 1.00 39.04 O HETATM 3111 O HOH A 448 12.221 -8.559 -21.293 1.00 21.87 O HETATM 3112 O HOH A 449 26.901 -3.296 -21.530 1.00 21.63 O HETATM 3113 O HOH A 450 12.242 -23.646 -8.284 1.00 44.00 O HETATM 3114 O HOH A 451 33.373 -2.854 -8.561 1.00 22.71 O HETATM 3115 O HOH A 452 44.598 -10.900 3.067 1.00 35.64 O HETATM 3116 O HOH A 453 15.771 -7.734 -20.629 1.00 18.35 O HETATM 3117 O HOH A 454 27.606 -11.656 -0.589 1.00 14.37 O HETATM 3118 O HOH A 455 23.759 -29.371 -11.935 1.00 50.75 O HETATM 3119 O HOH A 456 6.297 -17.277 -6.120 1.00 24.82 O HETATM 3120 O HOH A 457 24.346 1.190 -5.213 1.00 29.86 O HETATM 3121 O HOH A 458 30.769 -11.269 6.055 1.00 29.82 O HETATM 3122 O HOH A 459 23.268 0.088 -1.616 1.00 20.29 O HETATM 3123 O HOH A 460 27.166 -11.876 -8.204 1.00 13.78 O HETATM 3124 O HOH A 461 32.537 -8.071 9.825 1.00 17.09 O HETATM 3125 O HOH A 462 29.983 -21.256 -21.217 1.00 32.44 O HETATM 3126 O HOH A 463 38.424 -14.547 -6.947 1.00 31.17 O HETATM 3127 O HOH A 464 39.051 0.858 1.161 1.00 35.25 O HETATM 3128 O HOH A 465 30.822 -2.065 -9.325 1.00 48.33 O HETATM 3129 O HOH A 466 29.877 2.307 7.020 1.00 28.03 O HETATM 3130 O HOH A 467 37.663 -16.074 -1.977 1.00 36.63 O HETATM 3131 O HOH A 468 9.748 -3.803 2.767 1.00 37.32 O HETATM 3132 O HOH A 469 26.255 3.487 4.708 1.00 37.45 O HETATM 3133 O HOH A 470 31.037 -14.852 4.946 1.00 29.69 O HETATM 3134 O HOH A 471 5.059 -17.612 -8.341 1.00 34.39 O HETATM 3135 O HOH A 472 34.001 2.786 5.676 1.00 29.13 O HETATM 3136 O HOH A 473 34.252 -12.605 18.583 1.00 23.28 O HETATM 3137 O HOH A 474 17.164 -23.479 0.585 1.00 43.85 O HETATM 3138 O HOH A 475 30.859 -22.922 -11.440 1.00 17.54 O HETATM 3139 O HOH A 476 2.464 -18.278 -7.349 1.00 47.03 O HETATM 3140 O HOH A 477 26.133 -18.535 -4.016 1.00 24.98 O HETATM 3141 O HOH A 478 43.007 -3.761 6.747 1.00 42.08 O HETATM 3142 O HOH A 479 28.377 4.415 -2.896 1.00 48.96 O HETATM 3143 O HOH A 480 29.713 -20.729 -0.660 1.00 39.10 O HETATM 3144 O HOH A 481 18.244 -19.895 -21.753 1.00 33.67 O HETATM 3145 O HOH A 482 31.595 3.710 -6.425 1.00 34.24 O HETATM 3146 O HOH A 483 14.419 -12.711 -21.174 1.00 37.16 O HETATM 3147 O HOH A 484 18.633 -16.746 0.199 1.00 25.15 O HETATM 3148 O HOH A 485 10.206 -10.948 -14.096 1.00 29.49 O HETATM 3149 O HOH A 486 30.459 -30.360 -8.260 1.00 45.45 O HETATM 3150 O HOH A 487 19.765 -27.908 -13.757 1.00 51.17 O HETATM 3151 O HOH A 488 36.118 -25.848 -10.497 1.00 35.10 O HETATM 3152 O HOH A 489 42.755 -14.777 11.287 1.00 37.77 O HETATM 3153 O HOH A 490 35.867 1.097 7.126 1.00 24.15 O HETATM 3154 O HOH A 491 36.295 -17.376 -5.919 1.00 21.68 O HETATM 3155 O HOH A 492 41.728 -11.352 0.302 1.00 30.51 O HETATM 3156 O HOH A 493 33.062 -24.248 -5.576 1.00 40.53 O HETATM 3157 O HOH A 494 30.986 -8.968 12.052 1.00 16.21 O HETATM 3158 O HOH A 495 27.009 -26.964 -8.116 1.00 25.82 O HETATM 3159 O HOH A 496 29.295 -10.966 10.479 1.00 34.26 O HETATM 3160 O HOH A 497 25.359 -21.256 -21.164 1.00 21.86 O HETATM 3161 O HOH A 498 2.408 -17.968 1.472 1.00 28.90 O HETATM 3162 O HOH A 499 15.410 -17.189 -21.151 1.00 36.65 O HETATM 3163 O HOH A 500 33.396 -5.893 15.928 1.00 18.54 O HETATM 3164 O HOH A 501 41.691 -0.719 -3.656 1.00 35.11 O HETATM 3165 O HOH A 502 0.125 -12.064 -2.983 1.00 46.69 O HETATM 3166 O HOH A 503 31.499 -8.658 7.302 1.00 38.62 O HETATM 3167 O HOH A 504 19.486 -29.562 -8.819 1.00 36.80 O HETATM 3168 O HOH A 505 26.877 -3.635 2.243 1.00 16.29 O HETATM 3169 O HOH A 506 29.816 -10.343 -23.727 1.00 25.12 O HETATM 3170 O HOH A 507 0.128 -16.024 -4.322 1.00 47.31 O HETATM 3171 O HOH A 508 25.433 -24.908 -1.128 1.00 31.59 O HETATM 3172 O HOH A 509 29.527 -11.864 8.362 1.00 38.98 O HETATM 3173 O HOH A 510 41.981 -0.447 -7.480 1.00 43.41 O HETATM 3174 O HOH A 511 43.677 -3.889 3.955 1.00 29.99 O HETATM 3175 O HOH A 512 19.889 -20.181 1.533 1.00 43.25 O HETATM 3176 O HOH A 513 32.479 -10.331 7.880 1.00 34.14 O HETATM 3177 O HOH A 514 40.188 -7.774 -6.991 1.00 37.64 O HETATM 3178 O HOH A 515 33.077 -5.261 -10.359 1.00 36.75 O HETATM 3179 O HOH A 516 35.291 -19.031 -7.885 1.00 18.29 O HETATM 3180 O HOH A 517 16.653 -28.616 -9.268 1.00 48.85 O HETATM 3181 O HOH A 518 15.510 -12.698 1.474 1.00 30.91 O HETATM 3182 O HOH A 519 30.629 -3.326 -17.326 1.00 25.99 O HETATM 3183 O HOH A 520 33.422 -8.094 5.537 1.00 18.67 O HETATM 3184 O HOH A 521 26.862 -28.105 -15.545 1.00 32.53 O HETATM 3185 O HOH A 522 16.357 -15.569 1.631 1.00 33.69 O HETATM 3186 O HOH A 523 45.236 -8.392 9.238 1.00 29.49 O HETATM 3187 O HOH A 524 26.808 -0.960 -12.613 1.00 30.02 O HETATM 3188 O HOH A 525 9.114 -1.548 -0.651 1.00 39.28 O HETATM 3189 O HOH A 526 12.489 -24.109 -0.468 1.00 35.80 O HETATM 3190 O HOH A 527 38.823 -18.871 14.595 1.00 26.08 O HETATM 3191 O HOH A 528 1.971 -16.159 -1.083 1.00 36.99 O HETATM 3192 O HOH A 529 33.956 -11.153 -21.411 1.00 32.61 O HETATM 3193 O HOH A 530 28.787 0.881 12.275 1.00 45.85 O HETATM 3194 O HOH A 531 38.072 -1.552 5.602 1.00 38.98 O HETATM 3195 O HOH A 532 27.855 -17.359 -26.745 1.00 48.11 O HETATM 3196 O HOH A 533 3.937 -25.450 -7.268 1.00 45.39 O HETATM 3197 O HOH A 534 43.530 -0.449 1.440 1.00 46.35 O HETATM 3198 O HOH A 535 40.921 -13.110 -15.337 1.00 44.22 O HETATM 3199 O HOH A 536 35.396 -10.736 -16.367 1.00 35.08 O HETATM 3200 O HOH A 537 25.196 -11.722 -27.439 1.00 23.22 O HETATM 3201 O HOH A 538 38.088 -22.495 -0.496 1.00 45.55 O HETATM 3202 O HOH A 539 14.834 -3.763 -13.156 1.00 34.18 O HETATM 3203 O HOH A 540 29.484 -13.484 -28.694 1.00 45.53 O HETATM 3204 O HOH A 541 34.810 -13.229 -19.575 1.00 45.34 O HETATM 3205 O HOH A 542 29.664 -14.415 7.408 1.00 44.47 O HETATM 3206 O HOH A 543 25.351 -15.774 3.028 1.00 49.61 O HETATM 3207 O HOH A 544 27.806 -29.369 -7.198 1.00 40.86 O HETATM 3208 O HOH A 545 37.939 1.232 5.293 1.00 45.55 O HETATM 3209 O HOH A 546 -1.500 -17.545 -5.860 1.00 41.35 O HETATM 3210 O HOH A 547 26.453 -18.199 -0.624 1.00 39.88 O HETATM 3211 O HOH A 548 29.233 -1.636 -13.844 1.00 44.56 O HETATM 3212 O HOH A 549 27.575 -0.724 9.989 1.00 36.80 O CONECT 151 3015 CONECT 840 995 CONECT 995 840 CONECT 1061 1141 CONECT 1141 1061 CONECT 1802 2853 CONECT 1883 2624 CONECT 1984 2123 CONECT 2123 1984 CONECT 2170 2309 CONECT 2309 2170 CONECT 2322 2386 CONECT 2323 2386 CONECT 2386 2322 2323 CONECT 2624 1883 CONECT 2853 1802 CONECT 3015 151 CONECT 3050 3052 CONECT 3051 3052 CONECT 3052 3050 3051 3053 CONECT 3053 3052 3054 3055 3060 CONECT 3054 3053 3061 CONECT 3055 3053 3056 3057 3062 CONECT 3056 3055 3063 CONECT 3057 3055 3058 3059 CONECT 3058 3057 CONECT 3059 3057 CONECT 3060 3053 CONECT 3061 3054 CONECT 3062 3055 CONECT 3063 3056 MASTER 342 0 1 5 16 0 0 6 1678 1 31 16 END