HEADER VIRUS 17-JUN-25 9P4M TITLE CRYO-EM STRUCTURE OF AAV9-B10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: AAV9-B10 VP1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ADENO-ASSOCIATED VIRUS; SOURCE 3 ORGANISM_TAXID: 272636; SOURCE 4 GENE: CAP; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS AAV, LIVER, DETARGET, AAV9, CAP-B10, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR T.J.BRITTAIN,S.JANG REVDAT 1 15-APR-26 9P4M 0 JRNL AUTH T.J.BRITTAIN,S.JANG JRNL TITL CRYO-EM STRUCTURE OF AAV9-B10 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.050 REMARK 3 NUMBER OF PARTICLES : 26411 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9P4M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1000295912. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ADENO-ASSOCIATED VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 60-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 60-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.809017 -0.500000 0.309017 459.20000 REMARK 350 BIOMT2 2 -0.500000 0.309017 -0.809017 459.20000 REMARK 350 BIOMT3 2 0.309017 -0.809017 -0.500000 459.20000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 459.20000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 459.20000 REMARK 350 BIOMT1 4 0.809017 -0.500000 -0.309017 229.60000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 -0.809017 601.10060 REMARK 350 BIOMT3 4 0.309017 0.809017 -0.500000 87.69940 REMARK 350 BIOMT1 5 0.500000 0.309017 -0.809017 229.60000 REMARK 350 BIOMT2 5 -0.309017 -0.809017 -0.500000 601.10060 REMARK 350 BIOMT3 5 -0.809017 0.500000 -0.309017 371.50060 REMARK 350 BIOMT1 6 -0.309017 -0.809017 -0.500000 601.10060 REMARK 350 BIOMT2 6 -0.809017 0.500000 -0.309017 371.50060 REMARK 350 BIOMT3 6 0.500000 0.309017 -0.809017 229.60000 REMARK 350 BIOMT1 7 -0.809017 0.500000 -0.309017 371.50060 REMARK 350 BIOMT2 7 0.500000 0.309017 -0.809017 229.60000 REMARK 350 BIOMT3 7 -0.309017 -0.809017 -0.500000 601.10060 REMARK 350 BIOMT1 8 -0.809017 -0.500000 -0.309017 601.10060 REMARK 350 BIOMT2 8 0.500000 -0.309017 -0.809017 371.50060 REMARK 350 BIOMT3 8 0.309017 -0.809017 0.500000 229.60000 REMARK 350 BIOMT1 9 -0.309017 0.809017 -0.500000 229.60000 REMARK 350 BIOMT2 9 -0.809017 -0.500000 -0.309017 601.10060 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 87.69940 REMARK 350 BIOMT1 10 0.500000 -0.309017 -0.809017 371.50060 REMARK 350 BIOMT2 10 -0.309017 0.809017 -0.500000 229.60000 REMARK 350 BIOMT3 10 0.809017 0.500000 0.309017 -141.90060 REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 459.20000 REMARK 350 BIOMT2 11 -1.000000 0.000000 0.000000 459.20000 REMARK 350 BIOMT3 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 -0.500000 -0.309017 -0.809017 601.10060 REMARK 350 BIOMT2 12 0.309017 0.809017 -0.500000 87.69940 REMARK 350 BIOMT3 12 0.809017 -0.500000 -0.309017 229.60000 REMARK 350 BIOMT1 13 -0.500000 0.309017 -0.809017 459.20000 REMARK 350 BIOMT2 13 0.309017 -0.809017 -0.500000 459.20000 REMARK 350 BIOMT3 13 -0.809017 -0.500000 0.309017 459.20000 REMARK 350 BIOMT1 14 -0.309017 -0.809017 -0.500000 601.10060 REMARK 350 BIOMT2 14 0.809017 -0.500000 0.309017 87.69940 REMARK 350 BIOMT3 14 -0.500000 -0.309017 0.809017 229.60000 REMARK 350 BIOMT1 15 -0.809017 0.500000 -0.309017 371.50060 REMARK 350 BIOMT2 15 -0.500000 -0.309017 0.809017 229.60000 REMARK 350 BIOMT3 15 0.309017 0.809017 0.500000 -141.90060 REMARK 350 BIOMT1 16 0.500000 0.309017 -0.809017 229.60000 REMARK 350 BIOMT2 16 0.309017 0.809017 0.500000 -141.90060 REMARK 350 BIOMT3 16 0.809017 -0.500000 0.309017 87.69940 REMARK 350 BIOMT1 17 -0.500000 0.309017 -0.809017 459.20000 REMARK 350 BIOMT2 17 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 17 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 18 0.000000 0.000000 -1.000000 459.20000 REMARK 350 BIOMT2 18 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 -1.000000 0.000000 459.20000 REMARK 350 BIOMT1 19 -0.500000 -0.309017 -0.809017 601.10060 REMARK 350 BIOMT2 19 -0.309017 -0.809017 0.500000 371.50060 REMARK 350 BIOMT3 19 -0.809017 0.500000 0.309017 229.60000 REMARK 350 BIOMT1 20 0.000000 -1.000000 0.000000 459.20000 REMARK 350 BIOMT2 20 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 20 -1.000000 0.000000 0.000000 459.20000 REMARK 350 BIOMT1 21 -0.809017 0.500000 0.309017 229.60000 REMARK 350 BIOMT2 21 0.500000 0.309017 0.809017 -141.90060 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 87.69940 REMARK 350 BIOMT1 22 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 22 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 22 0.309017 -0.809017 -0.500000 459.20000 REMARK 350 BIOMT1 23 -0.309017 0.809017 -0.500000 229.60000 REMARK 350 BIOMT2 23 0.809017 0.500000 0.309017 -141.90060 REMARK 350 BIOMT3 23 0.500000 -0.309017 -0.809017 371.50060 REMARK 350 BIOMT1 24 0.500000 -0.309017 -0.809017 371.50060 REMARK 350 BIOMT2 24 0.309017 -0.809017 0.500000 229.60000 REMARK 350 BIOMT3 24 -0.809017 -0.500000 -0.309017 601.10060 REMARK 350 BIOMT1 25 -0.809017 -0.500000 -0.309017 601.10060 REMARK 350 BIOMT2 25 -0.500000 0.309017 0.809017 87.69940 REMARK 350 BIOMT3 25 -0.309017 0.809017 -0.500000 229.60000 REMARK 350 BIOMT1 26 -0.309017 -0.809017 0.500000 371.50060 REMARK 350 BIOMT2 26 -0.809017 0.500000 0.309017 229.60000 REMARK 350 BIOMT3 26 -0.500000 -0.309017 -0.809017 601.10060 REMARK 350 BIOMT1 27 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 27 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 27 -0.500000 0.309017 -0.809017 459.20000 REMARK 350 BIOMT1 28 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 28 0.000000 -1.000000 0.000000 459.20000 REMARK 350 BIOMT3 28 0.000000 0.000000 -1.000000 459.20000 REMARK 350 BIOMT1 29 0.309017 0.809017 -0.500000 87.69940 REMARK 350 BIOMT2 29 0.809017 -0.500000 -0.309017 229.60000 REMARK 350 BIOMT3 29 -0.500000 -0.309017 -0.809017 601.10060 REMARK 350 BIOMT1 30 0.309017 -0.809017 -0.500000 459.20000 REMARK 350 BIOMT2 30 -0.809017 -0.500000 0.309017 459.20000 REMARK 350 BIOMT3 30 -0.500000 0.309017 -0.809017 459.20000 REMARK 350 BIOMT1 31 -1.000000 0.000000 0.000000 459.20000 REMARK 350 BIOMT2 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 -1.000000 459.20000 REMARK 350 BIOMT1 32 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 32 -0.500000 0.309017 -0.809017 459.20000 REMARK 350 BIOMT3 32 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 33 0.000000 -1.000000 0.000000 459.20000 REMARK 350 BIOMT2 33 0.000000 0.000000 -1.000000 459.20000 REMARK 350 BIOMT3 33 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 34 -0.809017 0.500000 0.309017 229.60000 REMARK 350 BIOMT2 34 -0.500000 -0.309017 -0.809017 601.10060 REMARK 350 BIOMT3 34 -0.309017 -0.809017 0.500000 371.50060 REMARK 350 BIOMT1 35 -0.500000 -0.309017 0.809017 229.60000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 -0.500000 601.10060 REMARK 350 BIOMT3 35 0.809017 -0.500000 0.309017 87.69940 REMARK 350 BIOMT1 36 0.309017 0.809017 0.500000 -141.90060 REMARK 350 BIOMT2 36 -0.809017 0.500000 -0.309017 371.50060 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 229.60000 REMARK 350 BIOMT1 37 0.809017 -0.500000 0.309017 87.69940 REMARK 350 BIOMT2 37 0.500000 0.309017 -0.809017 229.60000 REMARK 350 BIOMT3 37 0.309017 0.809017 0.500000 -141.90060 REMARK 350 BIOMT1 38 0.809017 0.500000 0.309017 -141.90060 REMARK 350 BIOMT2 38 0.500000 -0.309017 -0.809017 371.50060 REMARK 350 BIOMT3 38 -0.309017 0.809017 -0.500000 229.60000 REMARK 350 BIOMT1 39 0.309017 -0.809017 0.500000 229.60000 REMARK 350 BIOMT2 39 -0.809017 -0.500000 -0.309017 601.10060 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 371.50060 REMARK 350 BIOMT1 40 -0.500000 0.309017 0.809017 87.69940 REMARK 350 BIOMT2 40 -0.309017 0.809017 -0.500000 229.60000 REMARK 350 BIOMT3 40 -0.809017 -0.500000 -0.309017 601.10060 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 459.20000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 459.20000 REMARK 350 BIOMT1 42 0.500000 0.309017 0.809017 -141.90060 REMARK 350 BIOMT2 42 0.309017 0.809017 -0.500000 87.69940 REMARK 350 BIOMT3 42 -0.809017 0.500000 0.309017 229.60000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 0.309017 -0.809017 -0.500000 459.20000 REMARK 350 BIOMT3 43 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 44 0.309017 0.809017 0.500000 -141.90060 REMARK 350 BIOMT2 44 0.809017 -0.500000 0.309017 87.69940 REMARK 350 BIOMT3 44 0.500000 0.309017 -0.809017 229.60000 REMARK 350 BIOMT1 45 0.809017 -0.500000 0.309017 87.69940 REMARK 350 BIOMT2 45 -0.500000 -0.309017 0.809017 229.60000 REMARK 350 BIOMT3 45 -0.309017 -0.809017 -0.500000 601.10060 REMARK 350 BIOMT1 46 -0.500000 -0.309017 0.809017 229.60000 REMARK 350 BIOMT2 46 0.309017 0.809017 0.500000 -141.90060 REMARK 350 BIOMT3 46 -0.809017 0.500000 -0.309017 371.50060 REMARK 350 BIOMT1 47 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 47 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 47 -0.809017 -0.500000 0.309017 459.20000 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 48 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 0.809017 -141.90060 REMARK 350 BIOMT2 49 -0.309017 -0.809017 0.500000 371.50060 REMARK 350 BIOMT3 49 0.809017 -0.500000 -0.309017 229.60000 REMARK 350 BIOMT1 50 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 50 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 50 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 51 0.809017 -0.500000 -0.309017 229.60000 REMARK 350 BIOMT2 51 0.500000 0.309017 0.809017 -141.90060 REMARK 350 BIOMT3 51 -0.309017 -0.809017 0.500000 371.50060 REMARK 350 BIOMT1 52 -0.809017 -0.500000 0.309017 459.20000 REMARK 350 BIOMT2 52 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 53 0.309017 -0.809017 0.500000 229.60000 REMARK 350 BIOMT2 53 0.809017 0.500000 0.309017 -141.90060 REMARK 350 BIOMT3 53 -0.500000 0.309017 0.809017 87.69940 REMARK 350 BIOMT1 54 -0.500000 0.309017 0.809017 87.69940 REMARK 350 BIOMT2 54 0.309017 -0.809017 0.500000 229.60000 REMARK 350 BIOMT3 54 0.809017 0.500000 0.309017 -141.90060 REMARK 350 BIOMT1 55 0.809017 0.500000 0.309017 -141.90060 REMARK 350 BIOMT2 55 -0.500000 0.309017 0.809017 87.69940 REMARK 350 BIOMT3 55 0.309017 -0.809017 0.500000 229.60000 REMARK 350 BIOMT1 56 0.309017 0.809017 -0.500000 87.69940 REMARK 350 BIOMT2 56 -0.809017 0.500000 0.309017 229.60000 REMARK 350 BIOMT3 56 0.500000 0.309017 0.809017 -141.90060 REMARK 350 BIOMT1 57 0.309017 -0.809017 -0.500000 459.20000 REMARK 350 BIOMT2 57 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 57 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 459.20000 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 459.20000 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.809017 0.500000 371.50060 REMARK 350 BIOMT2 59 0.809017 -0.500000 -0.309017 229.60000 REMARK 350 BIOMT3 59 0.500000 0.309017 0.809017 -141.90060 REMARK 350 BIOMT1 60 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 60 -0.809017 -0.500000 0.309017 459.20000 REMARK 350 BIOMT3 60 0.500000 -0.309017 0.809017 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 4 REMARK 465 GLY A 5 REMARK 465 TYR A 6 REMARK 465 LEU A 7 REMARK 465 PRO A 8 REMARK 465 ASP A 9 REMARK 465 TRP A 10 REMARK 465 LEU A 11 REMARK 465 GLU A 12 REMARK 465 ASP A 13 REMARK 465 ASN A 14 REMARK 465 LEU A 15 REMARK 465 SER A 16 REMARK 465 GLU A 17 REMARK 465 GLY A 18 REMARK 465 ILE A 19 REMARK 465 ARG A 20 REMARK 465 GLU A 21 REMARK 465 TRP A 22 REMARK 465 TRP A 23 REMARK 465 ALA A 24 REMARK 465 LEU A 25 REMARK 465 LYS A 26 REMARK 465 PRO A 27 REMARK 465 GLY A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 GLN A 31 REMARK 465 PRO A 32 REMARK 465 LYS A 33 REMARK 465 ALA A 34 REMARK 465 ASN A 35 REMARK 465 GLN A 36 REMARK 465 GLN A 37 REMARK 465 HIS A 38 REMARK 465 GLN A 39 REMARK 465 ASP A 40 REMARK 465 ASN A 41 REMARK 465 ALA A 42 REMARK 465 ARG A 43 REMARK 465 GLY A 44 REMARK 465 LEU A 45 REMARK 465 VAL A 46 REMARK 465 LEU A 47 REMARK 465 PRO A 48 REMARK 465 GLY A 49 REMARK 465 TYR A 50 REMARK 465 LYS A 51 REMARK 465 TYR A 52 REMARK 465 LEU A 53 REMARK 465 GLY A 54 REMARK 465 PRO A 55 REMARK 465 GLY A 56 REMARK 465 ASN A 57 REMARK 465 GLY A 58 REMARK 465 LEU A 59 REMARK 465 ASP A 60 REMARK 465 LYS A 61 REMARK 465 GLY A 62 REMARK 465 GLU A 63 REMARK 465 PRO A 64 REMARK 465 VAL A 65 REMARK 465 ASN A 66 REMARK 465 ALA A 67 REMARK 465 ALA A 68 REMARK 465 ASP A 69 REMARK 465 ALA A 70 REMARK 465 ALA A 71 REMARK 465 ALA A 72 REMARK 465 LEU A 73 REMARK 465 GLU A 74 REMARK 465 HIS A 75 REMARK 465 ASP A 76 REMARK 465 LYS A 77 REMARK 465 ALA A 78 REMARK 465 TYR A 79 REMARK 465 ASP A 80 REMARK 465 GLN A 81 REMARK 465 GLN A 82 REMARK 465 LEU A 83 REMARK 465 LYS A 84 REMARK 465 ALA A 85 REMARK 465 GLY A 86 REMARK 465 ASP A 87 REMARK 465 ASN A 88 REMARK 465 PRO A 89 REMARK 465 TYR A 90 REMARK 465 LEU A 91 REMARK 465 LYS A 92 REMARK 465 TYR A 93 REMARK 465 ASN A 94 REMARK 465 HIS A 95 REMARK 465 ALA A 96 REMARK 465 ASP A 97 REMARK 465 ALA A 98 REMARK 465 GLU A 99 REMARK 465 PHE A 100 REMARK 465 GLN A 101 REMARK 465 GLU A 102 REMARK 465 ARG A 103 REMARK 465 LEU A 104 REMARK 465 LYS A 105 REMARK 465 GLU A 106 REMARK 465 ASP A 107 REMARK 465 THR A 108 REMARK 465 SER A 109 REMARK 465 PHE A 110 REMARK 465 GLY A 111 REMARK 465 GLY A 112 REMARK 465 ASN A 113 REMARK 465 LEU A 114 REMARK 465 GLY A 115 REMARK 465 ARG A 116 REMARK 465 ALA A 117 REMARK 465 VAL A 118 REMARK 465 PHE A 119 REMARK 465 GLN A 120 REMARK 465 ALA A 121 REMARK 465 LYS A 122 REMARK 465 LYS A 123 REMARK 465 ARG A 124 REMARK 465 LEU A 125 REMARK 465 LEU A 126 REMARK 465 GLU A 127 REMARK 465 PRO A 128 REMARK 465 LEU A 129 REMARK 465 GLY A 130 REMARK 465 LEU A 131 REMARK 465 VAL A 132 REMARK 465 GLU A 133 REMARK 465 GLU A 134 REMARK 465 ALA A 135 REMARK 465 ALA A 136 REMARK 465 LYS A 137 REMARK 465 THR A 138 REMARK 465 ALA A 139 REMARK 465 PRO A 140 REMARK 465 GLY A 141 REMARK 465 LYS A 142 REMARK 465 LYS A 143 REMARK 465 ARG A 144 REMARK 465 PRO A 145 REMARK 465 VAL A 146 REMARK 465 GLU A 147 REMARK 465 GLN A 148 REMARK 465 SER A 149 REMARK 465 PRO A 150 REMARK 465 GLN A 151 REMARK 465 GLU A 152 REMARK 465 PRO A 153 REMARK 465 ASP A 154 REMARK 465 SER A 155 REMARK 465 SER A 156 REMARK 465 ALA A 157 REMARK 465 GLY A 158 REMARK 465 ILE A 159 REMARK 465 GLY A 160 REMARK 465 LYS A 161 REMARK 465 SER A 162 REMARK 465 GLY A 163 REMARK 465 ALA A 164 REMARK 465 GLN A 165 REMARK 465 PRO A 166 REMARK 465 ALA A 167 REMARK 465 LYS A 168 REMARK 465 LYS A 169 REMARK 465 ARG A 170 REMARK 465 LEU A 171 REMARK 465 ASN A 172 REMARK 465 PHE A 173 REMARK 465 GLY A 174 REMARK 465 GLN A 175 REMARK 465 THR A 176 REMARK 465 GLY A 177 REMARK 465 ASP A 178 REMARK 465 THR A 179 REMARK 465 GLU A 180 REMARK 465 SER A 181 REMARK 465 VAL A 182 REMARK 465 PRO A 183 REMARK 465 ASP A 184 REMARK 465 PRO A 185 REMARK 465 GLN A 186 REMARK 465 PRO A 187 REMARK 465 ILE A 188 REMARK 465 GLY A 189 REMARK 465 GLU A 190 REMARK 465 PRO A 191 REMARK 465 PRO A 192 REMARK 465 ALA A 193 REMARK 465 ALA A 194 REMARK 465 PRO A 195 REMARK 465 SER A 196 REMARK 465 GLY A 197 REMARK 465 VAL A 198 REMARK 465 GLY A 199 REMARK 465 SER A 200 REMARK 465 LEU A 201 REMARK 465 THR A 202 REMARK 465 MET A 203 REMARK 465 ALA A 204 REMARK 465 SER A 205 REMARK 465 GLY A 206 REMARK 465 GLY A 207 REMARK 465 GLY A 208 REMARK 465 ALA A 209 REMARK 465 PRO A 210 REMARK 465 VAL A 211 REMARK 465 ALA A 212 REMARK 465 ASP A 213 REMARK 465 ASN A 214 REMARK 465 ASN A 215 REMARK 465 GLU A 216 REMARK 465 GLY A 217 REMARK 465 ALA A 218 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 268 -167.00 -160.89 REMARK 500 ASN A 287 35.82 -95.92 REMARK 500 SER A 425 59.57 -97.19 REMARK 500 THR A 456 -162.74 -79.25 REMARK 500 SER A 538 31.65 -140.59 REMARK 500 HIS A 630 73.88 51.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-71274 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF AAV9-B10 DBREF 9P4M A 1 736 UNP Q6JC22 Q6JC22_9VIRU 1 736 SEQADV 9P4M ASN A 14 UNP Q6JC22 THR 14 CONFLICT SEQADV 9P4M GLU A 21 UNP Q6JC22 GLN 21 CONFLICT SEQADV 9P4M ALA A 24 UNP Q6JC22 LYS 24 CONFLICT SEQADV 9P4M ALA A 29 UNP Q6JC22 PRO 29 CONFLICT SEQADV 9P4M GLN A 31 UNP Q6JC22 PRO 31 CONFLICT SEQADV 9P4M ALA A 34 UNP Q6JC22 PRO 34 CONFLICT SEQADV 9P4M ASN A 35 UNP Q6JC22 ALA 35 CONFLICT SEQADV 9P4M GLN A 36 UNP Q6JC22 GLU 36 CONFLICT SEQADV 9P4M GLN A 37 UNP Q6JC22 ARG 37 CONFLICT SEQADV 9P4M GLN A 39 UNP Q6JC22 LYS 39 CONFLICT SEQADV 9P4M ASN A 41 UNP Q6JC22 ASP 41 CONFLICT SEQADV 9P4M ALA A 42 UNP Q6JC22 SER 42 CONFLICT SEQADV 9P4M ALA A 164 UNP Q6JC22 SER 164 CONFLICT SEQADV 9P4M ARG A 170 UNP Q6JC22 LYS 170 CONFLICT SEQADV 9P4M ASP A 452 UNP Q6JC22 ASN 452 CONFLICT SEQADV 9P4M ALA A 454 UNP Q6JC22 SER 454 CONFLICT SEQADV 9P4M ALA A 455 UNP Q6JC22 GLY 455 CONFLICT SEQADV 9P4M THR A 456 UNP Q6JC22 GLN 456 CONFLICT SEQADV 9P4M LYS A 457 UNP Q6JC22 ASN 457 CONFLICT SEQADV 9P4M ASN A 458 UNP Q6JC22 GLN 458 CONFLICT SEQRES 1 A 736 MET ALA ALA ASP GLY TYR LEU PRO ASP TRP LEU GLU ASP SEQRES 2 A 736 ASN LEU SER GLU GLY ILE ARG GLU TRP TRP ALA LEU LYS SEQRES 3 A 736 PRO GLY ALA PRO GLN PRO LYS ALA ASN GLN GLN HIS GLN SEQRES 4 A 736 ASP ASN ALA ARG GLY LEU VAL LEU PRO GLY TYR LYS TYR SEQRES 5 A 736 LEU GLY PRO GLY ASN GLY LEU ASP LYS GLY GLU PRO VAL SEQRES 6 A 736 ASN ALA ALA ASP ALA ALA ALA LEU GLU HIS ASP LYS ALA SEQRES 7 A 736 TYR ASP GLN GLN LEU LYS ALA GLY ASP ASN PRO TYR LEU SEQRES 8 A 736 LYS TYR ASN HIS ALA ASP ALA GLU PHE GLN GLU ARG LEU SEQRES 9 A 736 LYS GLU ASP THR SER PHE GLY GLY ASN LEU GLY ARG ALA SEQRES 10 A 736 VAL PHE GLN ALA LYS LYS ARG LEU LEU GLU PRO LEU GLY SEQRES 11 A 736 LEU VAL GLU GLU ALA ALA LYS THR ALA PRO GLY LYS LYS SEQRES 12 A 736 ARG PRO VAL GLU GLN SER PRO GLN GLU PRO ASP SER SER SEQRES 13 A 736 ALA GLY ILE GLY LYS SER GLY ALA GLN PRO ALA LYS LYS SEQRES 14 A 736 ARG LEU ASN PHE GLY GLN THR GLY ASP THR GLU SER VAL SEQRES 15 A 736 PRO ASP PRO GLN PRO ILE GLY GLU PRO PRO ALA ALA PRO SEQRES 16 A 736 SER GLY VAL GLY SER LEU THR MET ALA SER GLY GLY GLY SEQRES 17 A 736 ALA PRO VAL ALA ASP ASN ASN GLU GLY ALA ASP GLY VAL SEQRES 18 A 736 GLY SER SER SER GLY ASN TRP HIS CYS ASP SER GLN TRP SEQRES 19 A 736 LEU GLY ASP ARG VAL ILE THR THR SER THR ARG THR TRP SEQRES 20 A 736 ALA LEU PRO THR TYR ASN ASN HIS LEU TYR LYS GLN ILE SEQRES 21 A 736 SER ASN SER THR SER GLY GLY SER SER ASN ASP ASN ALA SEQRES 22 A 736 TYR PHE GLY TYR SER THR PRO TRP GLY TYR PHE ASP PHE SEQRES 23 A 736 ASN ARG PHE HIS CYS HIS PHE SER PRO ARG ASP TRP GLN SEQRES 24 A 736 ARG LEU ILE ASN ASN ASN TRP GLY PHE ARG PRO LYS ARG SEQRES 25 A 736 LEU ASN PHE LYS LEU PHE ASN ILE GLN VAL LYS GLU VAL SEQRES 26 A 736 THR ASP ASN ASN GLY VAL LYS THR ILE ALA ASN ASN LEU SEQRES 27 A 736 THR SER THR VAL GLN VAL PHE THR ASP SER ASP TYR GLN SEQRES 28 A 736 LEU PRO TYR VAL LEU GLY SER ALA HIS GLU GLY CYS LEU SEQRES 29 A 736 PRO PRO PHE PRO ALA ASP VAL PHE MET ILE PRO GLN TYR SEQRES 30 A 736 GLY TYR LEU THR LEU ASN ASP GLY SER GLN ALA VAL GLY SEQRES 31 A 736 ARG SER SER PHE TYR CYS LEU GLU TYR PHE PRO SER GLN SEQRES 32 A 736 MET LEU ARG THR GLY ASN ASN PHE GLN PHE SER TYR GLU SEQRES 33 A 736 PHE GLU ASN VAL PRO PHE HIS SER SER TYR ALA HIS SER SEQRES 34 A 736 GLN SER LEU ASP ARG LEU MET ASN PRO LEU ILE ASP GLN SEQRES 35 A 736 TYR LEU TYR TYR LEU SER LYS THR ILE ASP GLY ALA ALA SEQRES 36 A 736 THR LYS ASN GLN THR LEU LYS PHE SER VAL ALA GLY PRO SEQRES 37 A 736 SER ASN MET ALA VAL GLN GLY ARG ASN TYR ILE PRO GLY SEQRES 38 A 736 PRO SER TYR ARG GLN GLN ARG VAL SER THR THR VAL THR SEQRES 39 A 736 GLN ASN ASN ASN SER GLU PHE ALA TRP PRO GLY ALA SER SEQRES 40 A 736 SER TRP ALA LEU ASN GLY ARG ASN SER LEU MET ASN PRO SEQRES 41 A 736 GLY PRO ALA MET ALA SER HIS LYS GLU GLY GLU ASP ARG SEQRES 42 A 736 PHE PHE PRO LEU SER GLY SER LEU ILE PHE GLY LYS GLN SEQRES 43 A 736 GLY THR GLY ARG ASP ASN VAL ASP ALA ASP LYS VAL MET SEQRES 44 A 736 ILE THR ASN GLU GLU GLU ILE LYS THR THR ASN PRO VAL SEQRES 45 A 736 ALA THR GLU SER TYR GLY GLN VAL ALA THR ASN HIS GLN SEQRES 46 A 736 SER ALA GLN ALA GLN ALA GLN THR GLY TRP VAL GLN ASN SEQRES 47 A 736 GLN GLY ILE LEU PRO GLY MET VAL TRP GLN ASP ARG ASP SEQRES 48 A 736 VAL TYR LEU GLN GLY PRO ILE TRP ALA LYS ILE PRO HIS SEQRES 49 A 736 THR ASP GLY ASN PHE HIS PRO SER PRO LEU MET GLY GLY SEQRES 50 A 736 PHE GLY MET LYS HIS PRO PRO PRO GLN ILE LEU ILE LYS SEQRES 51 A 736 ASN THR PRO VAL PRO ALA ASP PRO PRO THR ALA PHE ASN SEQRES 52 A 736 LYS ASP LYS LEU ASN SER PHE ILE THR GLN TYR SER THR SEQRES 53 A 736 GLY GLN VAL SER VAL GLU ILE GLU TRP GLU LEU GLN LYS SEQRES 54 A 736 GLU ASN SER LYS ARG TRP ASN PRO GLU ILE GLN TYR THR SEQRES 55 A 736 SER ASN TYR TYR LYS SER ASN ASN VAL GLU PHE ALA VAL SEQRES 56 A 736 ASN THR GLU GLY VAL TYR SER GLU PRO ARG PRO ILE GLY SEQRES 57 A 736 THR ARG TYR LEU THR ARG ASN LEU HELIX 1 AA1 ASN A 262 GLY A 266 1 5 HELIX 2 AA2 ARG A 288 HIS A 292 5 5 HELIX 3 AA3 SER A 294 ASN A 304 1 11 HELIX 4 AA4 CYS A 396 PHE A 400 5 5 HELIX 5 AA5 ASN A 470 GLN A 474 5 5 HELIX 6 AA6 THR A 492 ASN A 496 5 5 HELIX 7 AA7 ASP A 554 ASP A 556 5 3 SHEET 1 AA1 5 SER A 232 LEU A 235 0 SHEET 2 AA1 5 ARG A 238 LEU A 249 -1 O ARG A 238 N LEU A 235 SHEET 3 AA1 5 GLN A 673 GLN A 688 -1 O TRP A 685 N VAL A 239 SHEET 4 AA1 5 GLY A 307 ASN A 328 -1 N LYS A 323 O TYR A 674 SHEET 5 AA1 5 VAL A 371 MET A 373 0 SHEET 1 AA2 5 VAL A 331 ASN A 336 0 SHEET 2 AA2 5 GLY A 307 ASN A 328 -1 N GLU A 324 O ALA A 335 SHEET 3 AA2 5 GLN A 673 GLN A 688 -1 O TYR A 674 N LYS A 323 SHEET 4 AA2 5 ARG A 238 LEU A 249 -1 N VAL A 239 O TRP A 685 SHEET 5 AA2 5 PHE A 411 GLU A 416 0 SHEET 1 AA3 3 LYS A 258 SER A 261 0 SHEET 2 AA3 3 PHE A 275 TYR A 283 -1 O GLY A 276 N ILE A 260 SHEET 3 AA3 3 GLN A 376 LEU A 380 -1 O TYR A 377 N THR A 279 SHEET 1 AA4 5 LYS A 258 SER A 261 0 SHEET 2 AA4 5 PHE A 275 TYR A 283 -1 O GLY A 276 N ILE A 260 SHEET 3 AA4 5 GLN A 646 ASN A 651 -1 O ILE A 649 N GLY A 282 SHEET 4 AA4 5 VAL A 342 ASP A 347 -1 N GLN A 343 O LYS A 650 SHEET 5 AA4 5 GLN A 403 LEU A 405 -1 O GLN A 403 N VAL A 344 SHEET 1 AA5 2 ALA A 427 HIS A 428 0 SHEET 2 AA5 2 THR A 733 ARG A 734 1 O ARG A 734 N ALA A 427 SHEET 1 AA6 2 TYR A 445 ILE A 451 0 SHEET 2 AA6 2 GLN A 459 VAL A 465 -1 O LYS A 462 N SER A 448 SHEET 1 AA7 2 SER A 483 TYR A 484 0 SHEET 2 AA7 2 ASN A 598 GLN A 599 -1 O GLN A 599 N SER A 483 SHEET 1 AA8 2 ARG A 488 SER A 490 0 SHEET 2 AA8 2 PHE A 534 PRO A 536 -1 O PHE A 535 N VAL A 489 SHEET 1 AA9 2 SER A 508 LEU A 511 0 SHEET 2 AA9 2 ARG A 514 LEU A 517 -1 O SER A 516 N TRP A 509 SHEET 1 AB1 2 ILE A 542 GLY A 544 0 SHEET 2 AB1 2 VAL A 558 ILE A 560 -1 O MET A 559 N PHE A 543 SHEET 1 AB2 2 GLY A 578 ALA A 581 0 SHEET 2 AB2 2 THR A 593 VAL A 596 -1 O VAL A 596 N GLY A 578 SHEET 1 AB3 2 TRP A 619 LYS A 621 0 SHEET 2 AB3 2 PHE A 638 MET A 640 1 O MET A 640 N ALA A 620 CISPEP 1 ASN A 519 PRO A 520 0 -3.73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 524 0 0 7 34 0 0 6 4129 1 0 57 END