HEADER TRANSFERASE 19-JUN-25 9P6J TITLE CRYSTAL STRUCTURE OF THE GGDEF DOMAIN OF THE DIGUANYLATE CYCLASE FROM TITLE 2 VIBRIO VULNIFICUS CMCP6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIGUANYLATE CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.65; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS CMCP6; SOURCE 3 ORGANISM_TAXID: 216895; SOURCE 4 GENE: VV1_2656; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS CENTER FOR STRUCTURAL BIOLOGY OF INFECTIOUS DISEASES, SBID, KEYWDS 2 DIGUANYLATE CYCLASE, GGDEF DOMAIN, STRUCTURAL GENOMICS, CSBID, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,K.J.F.SATCHELL,CENTER FOR AUTHOR 2 STRUCTURAL BIOLOGY OF INFECTIOUS DISEASES (CSBID) REVDAT 1 24-JUN-26 9P6J 0 JRNL AUTH G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,K.J.F.SATCHELL, JRNL AUTH 2 CENTER FOR STRUCTURAL BIOLOGY OF INFECTIOUS DISEASES (CSBID) JRNL TITL CRYSTAL STRUCTURE OF THE GGDEF DOMAIN OF THE DIGUANYLATE JRNL TITL 2 CYCLASE FROM VIBRIO VULNIFICUS CMCP6 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 480 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 693 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.4440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2562 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.71000 REMARK 3 B22 (A**2) : -1.36000 REMARK 3 B33 (A**2) : 3.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.360 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.307 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.658 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2640 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2470 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3594 ; 1.234 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5672 ; 0.424 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 1.796 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 16 ; 1.099 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 438 ; 5.552 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 414 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3160 ; 0.016 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 608 ; 0.014 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1322 ; 5.110 ; 5.413 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1322 ; 5.109 ; 5.413 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1656 ; 7.636 ; 9.720 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1657 ; 7.634 ; 9.719 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1318 ; 6.694 ; 6.088 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1319 ; 6.692 ; 6.088 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1939 ; 9.925 ;10.889 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3055 ;12.809 ;61.430 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3056 ;12.807 ;61.420 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 477 A 482 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8840 8.2860 1.6280 REMARK 3 T TENSOR REMARK 3 T11: 0.4375 T22: 0.1094 REMARK 3 T33: 0.5463 T12: 0.0086 REMARK 3 T13: 0.0162 T23: -0.1966 REMARK 3 L TENSOR REMARK 3 L11: 5.1616 L22: 11.8982 REMARK 3 L33: 17.4996 L12: 4.8358 REMARK 3 L13: 2.9418 L23: -8.0367 REMARK 3 S TENSOR REMARK 3 S11: -0.4220 S12: -0.2923 S13: 0.5949 REMARK 3 S21: -0.0844 S22: -0.6160 S23: 0.1238 REMARK 3 S31: -0.6476 S32: 0.3121 S33: 1.0380 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 483 A 532 REMARK 3 ORIGIN FOR THE GROUP (A): 23.5850 10.0500 10.3620 REMARK 3 T TENSOR REMARK 3 T11: 0.1196 T22: 0.0813 REMARK 3 T33: 0.1342 T12: 0.0044 REMARK 3 T13: -0.0525 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 11.6725 L22: 2.7975 REMARK 3 L33: 2.7342 L12: 0.3422 REMARK 3 L13: -3.2864 L23: 0.0990 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: 0.7610 S13: -0.1423 REMARK 3 S21: 0.2964 S22: 0.2321 S23: 0.3185 REMARK 3 S31: 0.2107 S32: -0.1125 S33: -0.2435 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 533 A 625 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4420 14.9010 15.7380 REMARK 3 T TENSOR REMARK 3 T11: 0.2559 T22: 0.0422 REMARK 3 T33: 0.0776 T12: 0.0550 REMARK 3 T13: -0.0249 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 5.1628 L22: 3.3975 REMARK 3 L33: 3.2482 L12: 0.1399 REMARK 3 L13: -1.2014 L23: -0.6827 REMARK 3 S TENSOR REMARK 3 S11: 0.1719 S12: 0.4029 S13: 0.0278 REMARK 3 S21: 0.5146 S22: 0.1104 S23: 0.2536 REMARK 3 S31: -0.3429 S32: -0.2426 S33: -0.2823 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 626 A 639 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2400 12.3530 28.5900 REMARK 3 T TENSOR REMARK 3 T11: 0.3613 T22: 0.0923 REMARK 3 T33: 0.1063 T12: 0.0238 REMARK 3 T13: 0.0680 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 13.1454 L22: 6.7021 REMARK 3 L33: 10.6972 L12: 2.0116 REMARK 3 L13: -10.1013 L23: -3.5146 REMARK 3 S TENSOR REMARK 3 S11: 0.4206 S12: -0.6517 S13: -0.2548 REMARK 3 S21: 1.3683 S22: -0.1318 S23: 0.4033 REMARK 3 S31: -0.6730 S32: 0.2902 S33: -0.2888 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 477 B 497 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6940 41.9450 16.4970 REMARK 3 T TENSOR REMARK 3 T11: 0.7496 T22: 0.4368 REMARK 3 T33: 0.1843 T12: 0.2362 REMARK 3 T13: -0.2429 T23: -0.2464 REMARK 3 L TENSOR REMARK 3 L11: 6.1880 L22: 13.3583 REMARK 3 L33: 3.3610 L12: 3.4877 REMARK 3 L13: -4.3800 L23: -1.9044 REMARK 3 S TENSOR REMARK 3 S11: 0.2835 S12: -1.2760 S13: 0.6959 REMARK 3 S21: 1.9948 S22: 0.1507 S23: -0.3253 REMARK 3 S31: -0.4327 S32: 0.8118 S33: -0.4342 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 498 B 536 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6150 36.4440 7.5180 REMARK 3 T TENSOR REMARK 3 T11: 0.2491 T22: 0.0363 REMARK 3 T33: 0.0887 T12: 0.0185 REMARK 3 T13: -0.0884 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 11.2544 L22: 3.1832 REMARK 3 L33: 1.0217 L12: 1.9856 REMARK 3 L13: -1.3199 L23: -1.3205 REMARK 3 S TENSOR REMARK 3 S11: -0.2536 S12: -0.4161 S13: 0.0473 REMARK 3 S21: 0.6773 S22: 0.0211 S23: -0.1691 REMARK 3 S31: -0.3933 S32: 0.0849 S33: 0.2325 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 537 B 613 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4560 32.5650 5.2640 REMARK 3 T TENSOR REMARK 3 T11: 0.0896 T22: 0.0452 REMARK 3 T33: 0.0238 T12: 0.0216 REMARK 3 T13: -0.0322 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 8.5242 L22: 5.4142 REMARK 3 L33: 2.1074 L12: 0.5627 REMARK 3 L13: -0.1355 L23: -2.1059 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.1117 S13: -0.1248 REMARK 3 S21: 0.5529 S22: -0.1352 S23: -0.3453 REMARK 3 S31: -0.0178 S32: 0.2804 S33: 0.1407 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 614 B 639 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5330 40.2550 -4.9510 REMARK 3 T TENSOR REMARK 3 T11: 0.3324 T22: 0.3829 REMARK 3 T33: 0.3101 T12: -0.1585 REMARK 3 T13: -0.0514 T23: 0.1997 REMARK 3 L TENSOR REMARK 3 L11: 10.0460 L22: 10.5572 REMARK 3 L33: 3.0260 L12: 2.4583 REMARK 3 L13: 5.0428 L23: -0.9165 REMARK 3 S TENSOR REMARK 3 S11: -0.3613 S12: 1.6315 S13: 1.1890 REMARK 3 S21: -0.3142 S22: -0.2107 S23: 0.1643 REMARK 3 S31: -0.0289 S32: 0.9087 S33: 0.5720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9P6J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1000297208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9990 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.84100 REMARK 200 R SYM FOR SHELL (I) : 0.84100 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 8.4 MG/ML, 0.5M SODIUM REMARK 280 CHLORIDE, 0.01M TRIS PH 8.3; SCREEN: PACT (F4), 0.2M POTASSIUM REMARK 280 THIOCYANATE, 0.1M BIS TRIS PROPANE PH 6.5, 20% (W/V) PEG3350; REMARK 280 CRYO: SCREEN, RESERVOIR., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.78600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.28500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.78600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.28500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 453 REMARK 465 ASN A 454 REMARK 465 ALA A 455 REMARK 465 LYS A 456 REMARK 465 ALA A 457 REMARK 465 SER A 458 REMARK 465 GLN A 459 REMARK 465 ARG A 460 REMARK 465 LEU A 461 REMARK 465 GLN A 462 REMARK 465 GLN A 463 REMARK 465 ALA A 464 REMARK 465 LEU A 465 REMARK 465 THR A 466 REMARK 465 GLN A 467 REMARK 465 GLN A 468 REMARK 465 ASN A 469 REMARK 465 VAL A 470 REMARK 465 GLN A 471 REMARK 465 LEU A 472 REMARK 465 GLU A 473 REMARK 465 THR A 474 REMARK 465 GLN A 475 REMARK 465 SER A 476 REMARK 465 SER B 453 REMARK 465 ASN B 454 REMARK 465 ALA B 455 REMARK 465 LYS B 456 REMARK 465 ALA B 457 REMARK 465 SER B 458 REMARK 465 GLN B 459 REMARK 465 ARG B 460 REMARK 465 LEU B 461 REMARK 465 GLN B 462 REMARK 465 GLN B 463 REMARK 465 ALA B 464 REMARK 465 LEU B 465 REMARK 465 THR B 466 REMARK 465 GLN B 467 REMARK 465 GLN B 468 REMARK 465 ASN B 469 REMARK 465 VAL B 470 REMARK 465 GLN B 471 REMARK 465 LEU B 472 REMARK 465 GLU B 473 REMARK 465 THR B 474 REMARK 465 GLN B 475 REMARK 465 SER B 476 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 483 45.52 73.33 REMARK 500 TRP A 554 76.72 -102.69 REMARK 500 GLU A 557 -4.82 -142.67 REMARK 500 SER A 582 20.06 -78.18 REMARK 500 ALA A 588 -157.46 -136.68 REMARK 500 ASN A 613 36.18 -86.51 REMARK 500 ARG B 483 43.09 75.35 REMARK 500 TRP B 554 74.63 -110.63 REMARK 500 GLU B 557 -12.06 -142.66 REMARK 500 ASN B 613 37.28 -85.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSBID-IDP97134.107 RELATED DB: TARGETTRACK DBREF1 9P6J A 456 639 UNP A0A3Q0L643_VIBVU DBREF2 9P6J A A0A3Q0L643 456 639 DBREF1 9P6J B 456 639 UNP A0A3Q0L643_VIBVU DBREF2 9P6J B A0A3Q0L643 456 639 SEQADV 9P6J SER A 453 UNP A0A3Q0L64 EXPRESSION TAG SEQADV 9P6J ASN A 454 UNP A0A3Q0L64 EXPRESSION TAG SEQADV 9P6J ALA A 455 UNP A0A3Q0L64 EXPRESSION TAG SEQADV 9P6J SER B 453 UNP A0A3Q0L64 EXPRESSION TAG SEQADV 9P6J ASN B 454 UNP A0A3Q0L64 EXPRESSION TAG SEQADV 9P6J ALA B 455 UNP A0A3Q0L64 EXPRESSION TAG SEQRES 1 A 187 SER ASN ALA LYS ALA SER GLN ARG LEU GLN GLN ALA LEU SEQRES 2 A 187 THR GLN GLN ASN VAL GLN LEU GLU THR GLN SER MSE ILE SEQRES 3 A 187 ASP PRO LEU THR ARG VAL ASN ASN ARG SER TYR LEU ASP SEQRES 4 A 187 LYS TRP TRP GLN SER ILE SER ASN LYS SER ASP THR MSE SEQRES 5 A 187 ASN THR PRO LYS CYS LEU ALA VAL VAL ASP ILE ASP HIS SEQRES 6 A 187 PHE LYS GLN ILE ASN ASP THR TYR GLY HIS GLN VAL GLY SEQRES 7 A 187 ASP ASP VAL LEU SER LYS VAL ALA ASP MSE LEU SER CYS SEQRES 8 A 187 CYS THR ARG GLY ASP ASP LEU LEU LEU ARG TRP GLY GLY SEQRES 9 A 187 GLU GLU PHE VAL LEU VAL LEU ASN LEU THR CYS GLN GLN SEQRES 10 A 187 ALA HIS GLN THR LEU THR ARG LEU GLN GLU ALA ILE SER SEQRES 11 A 187 ARG THR GLU ILE ALA ALA SER ASP GLU VAL VAL ALA VAL SEQRES 12 A 187 THR VAL SER ILE GLY ALA VAL CYS VAL SER SER ALA HIS SEQRES 13 A 187 GLU LEU GLN GLN ASN TRP GLU PRO TYR LEU PHE GLN ALA SEQRES 14 A 187 ASP GLU ALA LEU TYR ASP ILE LYS ARG GLY GLY ARG ASN SEQRES 15 A 187 GLY VAL LYS VAL ILE SEQRES 1 B 187 SER ASN ALA LYS ALA SER GLN ARG LEU GLN GLN ALA LEU SEQRES 2 B 187 THR GLN GLN ASN VAL GLN LEU GLU THR GLN SER MSE ILE SEQRES 3 B 187 ASP PRO LEU THR ARG VAL ASN ASN ARG SER TYR LEU ASP SEQRES 4 B 187 LYS TRP TRP GLN SER ILE SER ASN LYS SER ASP THR MSE SEQRES 5 B 187 ASN THR PRO LYS CYS LEU ALA VAL VAL ASP ILE ASP HIS SEQRES 6 B 187 PHE LYS GLN ILE ASN ASP THR TYR GLY HIS GLN VAL GLY SEQRES 7 B 187 ASP ASP VAL LEU SER LYS VAL ALA ASP MSE LEU SER CYS SEQRES 8 B 187 CYS THR ARG GLY ASP ASP LEU LEU LEU ARG TRP GLY GLY SEQRES 9 B 187 GLU GLU PHE VAL LEU VAL LEU ASN LEU THR CYS GLN GLN SEQRES 10 B 187 ALA HIS GLN THR LEU THR ARG LEU GLN GLU ALA ILE SER SEQRES 11 B 187 ARG THR GLU ILE ALA ALA SER ASP GLU VAL VAL ALA VAL SEQRES 12 B 187 THR VAL SER ILE GLY ALA VAL CYS VAL SER SER ALA HIS SEQRES 13 B 187 GLU LEU GLN GLN ASN TRP GLU PRO TYR LEU PHE GLN ALA SEQRES 14 B 187 ASP GLU ALA LEU TYR ASP ILE LYS ARG GLY GLY ARG ASN SEQRES 15 B 187 GLY VAL LYS VAL ILE MODRES 9P6J MSE A 477 MET MODIFIED RESIDUE MODRES 9P6J MSE A 504 MET MODIFIED RESIDUE MODRES 9P6J MSE A 540 MET MODIFIED RESIDUE MODRES 9P6J MSE B 477 MET MODIFIED RESIDUE MODRES 9P6J MSE B 504 MET MODIFIED RESIDUE MODRES 9P6J MSE B 540 MET MODIFIED RESIDUE HET MSE A 477 8 HET MSE A 504 8 HET MSE A 540 8 HET MSE B 477 8 HET MSE B 504 8 HET MSE B 540 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 HOH *12(H2 O) HELIX 1 AA1 SER A 488 SER A 498 1 11 HELIX 2 AA2 LYS A 500 THR A 506 1 7 HELIX 3 AA3 HIS A 517 GLY A 526 1 10 HELIX 4 AA4 GLY A 526 THR A 545 1 20 HELIX 5 AA5 THR A 566 SER A 582 1 17 HELIX 6 AA6 SER A 606 ASN A 613 1 8 HELIX 7 AA7 ASN A 613 ARG A 630 1 18 HELIX 8 AA8 SER B 488 SER B 498 1 11 HELIX 9 AA9 LYS B 500 THR B 506 1 7 HELIX 10 AB1 HIS B 517 GLY B 526 1 10 HELIX 11 AB2 GLY B 526 THR B 545 1 20 HELIX 12 AB3 THR B 566 SER B 582 1 17 HELIX 13 AB4 SER B 606 ASN B 613 1 8 HELIX 14 AB5 ASN B 613 ARG B 630 1 18 SHEET 1 AA1 5 LEU A 550 ARG A 553 0 SHEET 2 AA1 5 GLU A 558 LEU A 563 -1 O VAL A 560 N LEU A 552 SHEET 3 AA1 5 LYS A 508 ILE A 515 -1 N ALA A 511 O LEU A 561 SHEET 4 AA1 5 VAL A 597 VAL A 604 -1 O VAL A 604 N LYS A 508 SHEET 5 AA1 5 VAL A 636 ILE A 639 1 O ILE A 639 N CYS A 603 SHEET 1 AA2 2 GLU A 585 ALA A 587 0 SHEET 2 AA2 2 VAL A 592 ALA A 594 -1 O VAL A 593 N ILE A 586 SHEET 1 AA3 5 LEU B 550 TRP B 554 0 SHEET 2 AA3 5 GLU B 558 LEU B 563 -1 O GLU B 558 N TRP B 554 SHEET 3 AA3 5 LYS B 508 ILE B 515 -1 N ALA B 511 O LEU B 561 SHEET 4 AA3 5 VAL B 597 VAL B 604 -1 O VAL B 604 N LYS B 508 SHEET 5 AA3 5 VAL B 636 ILE B 639 1 O ILE B 639 N CYS B 603 SHEET 1 AA4 2 GLU B 585 ALA B 587 0 SHEET 2 AA4 2 VAL B 592 ALA B 594 -1 O VAL B 593 N ILE B 586 LINK C MSE A 477 N ILE A 478 1555 1555 1.34 LINK C THR A 503 N MSE A 504 1555 1555 1.34 LINK C MSE A 504 N ASN A 505 1555 1555 1.34 LINK C ASP A 539 N MSE A 540 1555 1555 1.34 LINK C MSE A 540 N LEU A 541 1555 1555 1.33 LINK C MSE B 477 N ILE B 478 1555 1555 1.34 LINK C THR B 503 N MSE B 504 1555 1555 1.34 LINK C MSE B 504 N ASN B 505 1555 1555 1.34 LINK C ASP B 539 N MSE B 540 1555 1555 1.34 LINK C MSE B 540 N LEU B 541 1555 1555 1.33 CRYST1 83.572 90.570 40.126 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011966 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024921 0.00000 CONECT 1 2 CONECT 2 1 3 5 CONECT 3 2 4 9 CONECT 4 3 CONECT 5 2 6 CONECT 6 5 7 CONECT 7 6 8 CONECT 8 7 CONECT 9 3 CONECT 225 230 CONECT 230 225 231 CONECT 231 230 232 234 CONECT 232 231 233 238 CONECT 233 232 CONECT 234 231 235 CONECT 235 234 236 CONECT 236 235 237 CONECT 237 236 CONECT 238 232 CONECT 510 516 CONECT 516 510 517 CONECT 517 516 518 520 CONECT 518 517 519 524 CONECT 519 518 CONECT 520 517 521 CONECT 521 520 522 CONECT 522 521 523 CONECT 523 522 CONECT 524 518 CONECT 1299 1300 CONECT 1300 1299 1301 1303 CONECT 1301 1300 1302 1307 CONECT 1302 1301 CONECT 1303 1300 1304 CONECT 1304 1303 1305 CONECT 1305 1304 1306 CONECT 1306 1305 CONECT 1307 1301 CONECT 1523 1528 CONECT 1528 1523 1529 CONECT 1529 1528 1530 1532 CONECT 1530 1529 1531 1536 CONECT 1531 1530 CONECT 1532 1529 1533 CONECT 1533 1532 1534 CONECT 1534 1533 1535 CONECT 1535 1534 CONECT 1536 1530 CONECT 1808 1814 CONECT 1814 1808 1815 CONECT 1815 1814 1816 1818 CONECT 1816 1815 1817 1822 CONECT 1817 1816 CONECT 1818 1815 1819 CONECT 1819 1818 1820 CONECT 1820 1819 1821 CONECT 1821 1820 CONECT 1822 1816 MASTER 466 0 6 14 14 0 0 6 2574 2 58 30 END