HEADER VIRAL PROTEIN 23-JUN-25 9P8L TITLE STRUCTURE OF LOCKIN IN COMPLEX WITH 3'CADPR COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOCKIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHAGE METAGENOME; SOURCE 3 ORGANISM_TAXID: 1660347; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNE EVASION, VIRAL SPONGE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.B.CHANG,P.J.KRANZUSCH REVDAT 1 30-JUL-25 9P8L 0 JRNL AUTH N.TAL,R.HADARI,R.B.CHANG,I.OSTERMAN,R.JACOBSON,E.YIRMIYA, JRNL AUTH 2 N.BECHON,D.HOCHHAUSER,M.L.RIVERA,B.MADHALA,J.GARB,T.WEIN, JRNL AUTH 3 P.KRANZUSCH,G.AMITAI,R.SOREK JRNL TITL STRUCTURAL MODELING REVEALS VIRAL PROTEINS THAT MANIPULATE JRNL TITL 2 HOST IMMUNE SIGNALING. JRNL REF BIORXIV 2025 JRNL REFN ISSN 2692-8205 JRNL PMID 40672179 JRNL DOI 10.1101/2025.07.12.664507 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5800 - 3.8100 1.00 2836 150 0.1623 0.1781 REMARK 3 2 3.8100 - 3.0200 1.00 2706 141 0.1516 0.2006 REMARK 3 3 3.0200 - 2.6400 1.00 2672 139 0.1699 0.1879 REMARK 3 4 2.6400 - 2.4000 1.00 2678 116 0.1739 0.1869 REMARK 3 5 2.4000 - 2.2300 1.00 2640 142 0.1751 0.2102 REMARK 3 6 2.2300 - 2.1000 1.00 2632 147 0.1777 0.2211 REMARK 3 7 2.1000 - 1.9900 1.00 2620 124 0.1731 0.2041 REMARK 3 8 1.9900 - 1.9000 1.00 2651 121 0.1819 0.2493 REMARK 3 9 1.9000 - 1.8300 1.00 2610 128 0.1997 0.2375 REMARK 3 10 1.8300 - 1.7700 1.00 2613 153 0.2287 0.2668 REMARK 3 11 1.7700 - 1.7100 1.00 2583 145 0.2475 0.3165 REMARK 3 12 1.7100 - 1.6600 1.00 2575 156 0.2526 0.2793 REMARK 3 13 1.6600 - 1.6200 1.00 2608 156 0.2628 0.3036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.189 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.274 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2189 REMARK 3 ANGLE : 0.842 2992 REMARK 3 CHIRALITY : 0.057 349 REMARK 3 PLANARITY : 0.005 370 REMARK 3 DIHEDRAL : 14.385 789 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2804 31.9448 23.0382 REMARK 3 T TENSOR REMARK 3 T11: 0.6551 T22: 0.7758 REMARK 3 T33: 0.6450 T12: 0.0743 REMARK 3 T13: 0.0492 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 8.1237 L22: 3.3372 REMARK 3 L33: 7.6053 L12: -0.3939 REMARK 3 L13: 7.8145 L23: 0.0751 REMARK 3 S TENSOR REMARK 3 S11: -1.0357 S12: -0.6566 S13: 0.0210 REMARK 3 S21: 1.1196 S22: 0.5490 S23: 0.0775 REMARK 3 S31: -0.6183 S32: 0.3571 S33: 0.3957 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0698 32.8805 19.5817 REMARK 3 T TENSOR REMARK 3 T11: 0.1940 T22: 0.3520 REMARK 3 T33: 0.2056 T12: 0.0177 REMARK 3 T13: -0.0336 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.4182 L22: 2.0206 REMARK 3 L33: 0.9510 L12: 0.0805 REMARK 3 L13: -0.6260 L23: 0.3986 REMARK 3 S TENSOR REMARK 3 S11: -0.0668 S12: -0.5682 S13: 0.0187 REMARK 3 S21: 0.2422 S22: 0.0892 S23: -0.2080 REMARK 3 S31: 0.0577 S32: 0.2888 S33: -0.0251 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7800 30.6004 12.2671 REMARK 3 T TENSOR REMARK 3 T11: 0.1559 T22: 0.1438 REMARK 3 T33: 0.1146 T12: 0.0083 REMARK 3 T13: 0.0102 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 3.3381 L22: 0.5982 REMARK 3 L33: 0.6135 L12: -0.5590 REMARK 3 L13: -0.3409 L23: 0.0728 REMARK 3 S TENSOR REMARK 3 S11: -0.1051 S12: -0.2586 S13: -0.0546 REMARK 3 S21: 0.0915 S22: 0.0463 S23: 0.0232 REMARK 3 S31: 0.0309 S32: 0.0337 S33: 0.0644 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8689 16.9455 6.2474 REMARK 3 T TENSOR REMARK 3 T11: 0.1870 T22: 0.2284 REMARK 3 T33: 0.2715 T12: 0.0468 REMARK 3 T13: 0.0119 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 0.4728 L22: 1.0933 REMARK 3 L33: 4.3861 L12: 0.5802 REMARK 3 L13: -0.4916 L23: 0.0337 REMARK 3 S TENSOR REMARK 3 S11: -0.0964 S12: -0.1630 S13: -0.3473 REMARK 3 S21: 0.0379 S22: -0.0398 S23: -0.2730 REMARK 3 S31: 0.1977 S32: 0.6099 S33: 0.1957 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6826 23.2052 0.4067 REMARK 3 T TENSOR REMARK 3 T11: 0.1413 T22: 0.1105 REMARK 3 T33: 0.1481 T12: 0.0039 REMARK 3 T13: 0.0106 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 3.2373 L22: 0.4471 REMARK 3 L33: 0.3366 L12: -0.0796 REMARK 3 L13: -0.1916 L23: -0.0803 REMARK 3 S TENSOR REMARK 3 S11: -0.0646 S12: -0.0253 S13: -0.3423 REMARK 3 S21: -0.0233 S22: 0.0119 S23: 0.0001 REMARK 3 S31: 0.0598 S32: 0.0170 S33: 0.0372 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 17 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5071 15.8942 -9.1224 REMARK 3 T TENSOR REMARK 3 T11: 0.2710 T22: 0.2787 REMARK 3 T33: 0.3465 T12: -0.0400 REMARK 3 T13: 0.0379 T23: -0.0446 REMARK 3 L TENSOR REMARK 3 L11: 3.2643 L22: 7.1186 REMARK 3 L33: 3.3757 L12: -4.6745 REMARK 3 L13: 0.1850 L23: 0.2843 REMARK 3 S TENSOR REMARK 3 S11: 0.1958 S12: 0.7426 S13: -0.0420 REMARK 3 S21: -0.6034 S22: 0.1124 S23: -0.2139 REMARK 3 S31: -0.0618 S32: 0.0742 S33: -0.2287 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 31 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8974 31.0376 -18.4548 REMARK 3 T TENSOR REMARK 3 T11: 0.1422 T22: 0.4388 REMARK 3 T33: 0.1773 T12: -0.0604 REMARK 3 T13: 0.0005 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 6.1234 L22: 4.2326 REMARK 3 L33: 0.0164 L12: 3.0983 REMARK 3 L13: -0.1044 L23: -0.1599 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: 0.3131 S13: -0.5305 REMARK 3 S21: -0.0236 S22: 0.0299 S23: -0.5958 REMARK 3 S31: -0.1625 S32: 0.7512 S33: 0.0673 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 43 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6061 28.4870 -11.5887 REMARK 3 T TENSOR REMARK 3 T11: 0.1522 T22: 0.1560 REMARK 3 T33: 0.1329 T12: 0.0022 REMARK 3 T13: -0.0029 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 8.7082 L22: 3.6291 REMARK 3 L33: 2.5235 L12: 4.5668 REMARK 3 L13: -2.4440 L23: -1.3367 REMARK 3 S TENSOR REMARK 3 S11: -0.0612 S12: 0.1864 S13: -0.1448 REMARK 3 S21: 0.0783 S22: 0.0646 S23: -0.0299 REMARK 3 S31: -0.0560 S32: 0.1138 S33: 0.0067 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 55 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5764 32.3481 -7.8426 REMARK 3 T TENSOR REMARK 3 T11: 0.1611 T22: 0.1668 REMARK 3 T33: 0.1531 T12: 0.0072 REMARK 3 T13: -0.0023 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.5252 L22: 0.5802 REMARK 3 L33: 0.4106 L12: 1.2347 REMARK 3 L13: 0.9109 L23: 0.3483 REMARK 3 S TENSOR REMARK 3 S11: -0.0704 S12: 0.0849 S13: -0.1787 REMARK 3 S21: 0.0003 S22: 0.0828 S23: -0.0761 REMARK 3 S31: 0.0397 S32: 0.0684 S33: 0.0080 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 82 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5650 27.1071 -18.5269 REMARK 3 T TENSOR REMARK 3 T11: 0.1821 T22: 0.1382 REMARK 3 T33: 0.1442 T12: -0.0013 REMARK 3 T13: -0.0047 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 3.6475 L22: 2.6527 REMARK 3 L33: 3.6168 L12: -0.1074 REMARK 3 L13: 0.0148 L23: 0.7210 REMARK 3 S TENSOR REMARK 3 S11: 0.0723 S12: 0.2691 S13: -0.2523 REMARK 3 S21: -0.1804 S22: -0.1189 S23: -0.0113 REMARK 3 S31: 0.2652 S32: -0.1535 S33: 0.0514 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9P8L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1000297331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : RAPD REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36306 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 80.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11.5% PEG6000, 0.1 M HEPES, PH 7.5, 5% REMARK 280 V/V MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.21200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.16500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.21200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.16500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 74.42400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 307 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 321 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 326 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 327 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 329 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 GLU C 3 REMARK 465 LYS C 4 REMARK 465 ASP C 5 REMARK 465 LEU C 6 REMARK 465 GLY C 7 REMARK 465 ILE C 8 REMARK 465 THR C 9 REMARK 465 GLU C 10 REMARK 465 VAL C 11 REMARK 465 ARG C 12 REMARK 465 GLY C 13 REMARK 465 ALA C 14 REMARK 465 LYS C 15 REMARK 465 ALA C 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 299 O HOH C 310 1.61 REMARK 500 O HOH C 285 O HOH C 289 1.62 REMARK 500 O HOH B 280 O HOH B 296 1.66 REMARK 500 O HOH A 269 O HOH B 286 1.67 REMARK 500 O ASN A 90 O HOH A 201 1.75 REMARK 500 O HOH A 313 O HOH A 315 1.75 REMARK 500 O HOH A 254 O HOH A 282 1.80 REMARK 500 O HOH C 278 O HOH C 321 1.82 REMARK 500 O HOH A 280 O HOH A 285 1.83 REMARK 500 O HOH A 244 O HOH A 266 1.89 REMARK 500 O HOH B 294 O HOH C 284 1.89 REMARK 500 O HOH B 299 O HOH C 227 1.89 REMARK 500 O HOH B 229 O HOH B 308 1.90 REMARK 500 O HOH C 294 O HOH C 305 1.92 REMARK 500 O HOH C 324 O HOH C 330 1.94 REMARK 500 O HOH B 282 O HOH C 290 1.96 REMARK 500 O HOH A 296 O HOH A 304 1.98 REMARK 500 N LYS A 4 O HOH A 202 2.01 REMARK 500 O HOH C 286 O HOH C 304 2.04 REMARK 500 O HOH C 286 O HOH C 309 2.06 REMARK 500 O HOH A 252 O HOH B 232 2.06 REMARK 500 O ILE C 97 O HOH C 201 2.07 REMARK 500 SD MET C 44 O HOH C 304 2.07 REMARK 500 O HOH C 291 O HOH C 292 2.08 REMARK 500 O HOH B 299 O HOH C 288 2.09 REMARK 500 O HOH A 292 O HOH A 301 2.09 REMARK 500 O HOH B 299 O HOH C 284 2.10 REMARK 500 O HOH B 207 O HOH B 285 2.12 REMARK 500 O HOH C 280 O HOH C 293 2.13 REMARK 500 O HOH B 274 O HOH B 279 2.13 REMARK 500 O HOH A 249 O HOH B 297 2.14 REMARK 500 O GLY A 89 O HOH A 203 2.14 REMARK 500 O HOH B 314 O HOH C 288 2.15 REMARK 500 O HOH C 322 O HOH C 328 2.16 REMARK 500 N ASN C 17 O HOH C 202 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 311 O HOH C 331 4555 1.75 REMARK 500 O HOH A 242 O HOH A 255 1455 1.97 REMARK 500 O HOH A 316 O HOH C 331 4555 2.06 REMARK 500 O HOH A 274 O HOH C 267 2565 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 315 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A 316 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A 317 DISTANCE = 7.47 ANGSTROMS REMARK 525 HOH B 320 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 321 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH B 322 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH C 325 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH C 326 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH C 327 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH C 328 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH C 329 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH C 330 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH C 331 DISTANCE = 7.11 ANGSTROMS DBREF 9P8L A 0 97 PDB 9P8L 9P8L 0 97 DBREF 9P8L B 0 97 PDB 9P8L 9P8L 0 97 DBREF 9P8L C 0 97 PDB 9P8L 9P8L 0 97 SEQRES 1 A 98 SER MET LYS GLU LYS ASP LEU GLY ILE THR GLU VAL ARG SEQRES 2 A 98 GLY ALA LYS ALA ASN ILE THR ASP LEU VAL VAL TYR GLY SEQRES 3 A 98 ASN GLY ASP THR PHE ALA LEU LEU CYS LYS ALA SER SER SEQRES 4 A 98 GLN GLU GLN GLY TRP MET LYS SER THR LYS VAL CYS ASN SEQRES 5 A 98 VAL TYR GLY GLY CYS ILE VAL GLN VAL THR THR GLN GLN SEQRES 6 A 98 ARG ASN PRO ASP GLY SER TYR ALA LEU ALA GLU ALA LEU SEQRES 7 A 98 THR PHE VAL PRO ASN ASN HIS ILE ASP THR SER GLY ASN SEQRES 8 A 98 THR ARG PHE ILE GLY LYS ILE SEQRES 1 B 98 SER MET LYS GLU LYS ASP LEU GLY ILE THR GLU VAL ARG SEQRES 2 B 98 GLY ALA LYS ALA ASN ILE THR ASP LEU VAL VAL TYR GLY SEQRES 3 B 98 ASN GLY ASP THR PHE ALA LEU LEU CYS LYS ALA SER SER SEQRES 4 B 98 GLN GLU GLN GLY TRP MET LYS SER THR LYS VAL CYS ASN SEQRES 5 B 98 VAL TYR GLY GLY CYS ILE VAL GLN VAL THR THR GLN GLN SEQRES 6 B 98 ARG ASN PRO ASP GLY SER TYR ALA LEU ALA GLU ALA LEU SEQRES 7 B 98 THR PHE VAL PRO ASN ASN HIS ILE ASP THR SER GLY ASN SEQRES 8 B 98 THR ARG PHE ILE GLY LYS ILE SEQRES 1 C 98 SER MET LYS GLU LYS ASP LEU GLY ILE THR GLU VAL ARG SEQRES 2 C 98 GLY ALA LYS ALA ASN ILE THR ASP LEU VAL VAL TYR GLY SEQRES 3 C 98 ASN GLY ASP THR PHE ALA LEU LEU CYS LYS ALA SER SER SEQRES 4 C 98 GLN GLU GLN GLY TRP MET LYS SER THR LYS VAL CYS ASN SEQRES 5 C 98 VAL TYR GLY GLY CYS ILE VAL GLN VAL THR THR GLN GLN SEQRES 6 C 98 ARG ASN PRO ASP GLY SER TYR ALA LEU ALA GLU ALA LEU SEQRES 7 C 98 THR PHE VAL PRO ASN ASN HIS ILE ASP THR SER GLY ASN SEQRES 8 C 98 THR ARG PHE ILE GLY LYS ILE HET OJC A 100 35 HET OJC B 100 35 HET OJC C 100 35 HETNAM OJC (2R,3R,3AS,5S,6R,7S,8R,11R,13S,15AR)-2-(6-AMINO-9H- HETNAM 2 OJC PURIN-9-YL)-3,6,7,11,13-PENTAHYDROXYOCTAHYDRO-2H,5H, HETNAM 3 OJC 11H,13H-5,8-EPOXY-11LAMBDA~5~,13LAMBDA~5~-FURO[2,3- HETNAM 4 OJC G][1,3,5,9,2,4]TETRAOXADIPHOSPHACYCLOTETRADECINE-11, HETNAM 5 OJC 13-DIONE FORMUL 4 OJC 3(C15 H21 N5 O13 P2) FORMUL 7 HOH *370(H2 O) HELIX 1 AA1 GLU A 10 ALA A 16 1 7 HELIX 2 AA2 GLU B 10 ILE B 18 1 9 SHEET 1 AA1 5 TYR A 71 PRO A 81 0 SHEET 2 AA1 5 GLY A 55 ARG A 65 -1 N CYS A 56 O VAL A 80 SHEET 3 AA1 5 TRP A 43 VAL A 52 -1 N LYS A 48 O GLN A 59 SHEET 4 AA1 5 ALA A 31 SER A 38 -1 N LEU A 33 O THR A 47 SHEET 5 AA1 5 VAL B 22 TYR B 24 -1 O TYR B 24 N LYS A 35 SHEET 1 AA2 2 ASN A 83 ASP A 86 0 SHEET 2 AA2 2 PHE A 93 LYS A 96 -1 O PHE A 93 N ASP A 86 SHEET 1 AA3 5 TYR B 71 PRO B 81 0 SHEET 2 AA3 5 GLY B 55 ARG B 65 -1 N CYS B 56 O VAL B 80 SHEET 3 AA3 5 TRP B 43 VAL B 52 -1 N LYS B 48 O GLN B 59 SHEET 4 AA3 5 ALA B 31 SER B 38 -1 N LEU B 33 O THR B 47 SHEET 5 AA3 5 VAL C 22 TYR C 24 -1 O TYR C 24 N LYS B 35 SHEET 1 AA4 2 ASN B 83 ASP B 86 0 SHEET 2 AA4 2 PHE B 93 LYS B 96 -1 O PHE B 93 N ASP B 86 SHEET 1 AA5 4 ALA C 31 SER C 38 0 SHEET 2 AA5 4 TRP C 43 VAL C 52 -1 O THR C 47 N LEU C 33 SHEET 3 AA5 4 GLY C 55 ARG C 65 -1 O GLN C 59 N LYS C 48 SHEET 4 AA5 4 TYR C 71 PRO C 81 -1 O THR C 78 N VAL C 58 SHEET 1 AA6 2 ASN C 83 ASP C 86 0 SHEET 2 AA6 2 PHE C 93 LYS C 96 -1 O PHE C 93 N ASP C 86 CRYST1 46.584 74.424 80.330 90.00 90.00 90.00 P 2 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021467 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012449 0.00000 CONECT 2046 2047 2049 CONECT 2047 2046 2063 CONECT 2048 2058 2061 CONECT 2049 2046 2050 2066 CONECT 2050 2049 2051 2065 CONECT 2051 2050 2063 2064 CONECT 2052 2053 2076 CONECT 2053 2052 2054 2077 CONECT 2054 2053 2055 2069 CONECT 2055 2054 2056 2068 CONECT 2056 2055 2077 2078 CONECT 2057 2064 2065 CONECT 2058 2048 2059 2064 CONECT 2059 2058 2060 2070 CONECT 2060 2059 2061 2078 CONECT 2061 2048 2060 2062 CONECT 2062 2061 2067 CONECT 2063 2047 2051 CONECT 2064 2051 2057 2058 CONECT 2065 2050 2057 CONECT 2066 2049 CONECT 2067 2062 2079 CONECT 2068 2055 CONECT 2069 2054 CONECT 2070 2059 CONECT 2071 2079 CONECT 2072 2079 CONECT 2073 2079 2080 CONECT 2074 2080 CONECT 2075 2080 CONECT 2076 2052 2080 CONECT 2077 2053 2056 CONECT 2078 2056 2060 CONECT 2079 2067 2071 2072 2073 CONECT 2080 2073 2074 2075 2076 CONECT 2081 2082 2084 CONECT 2082 2081 2098 CONECT 2083 2093 2096 CONECT 2084 2081 2085 2101 CONECT 2085 2084 2086 2100 CONECT 2086 2085 2098 2099 CONECT 2087 2088 2111 CONECT 2088 2087 2089 2112 CONECT 2089 2088 2090 2104 CONECT 2090 2089 2091 2103 CONECT 2091 2090 2112 2113 CONECT 2092 2099 2100 CONECT 2093 2083 2094 2099 CONECT 2094 2093 2095 2105 CONECT 2095 2094 2096 2113 CONECT 2096 2083 2095 2097 CONECT 2097 2096 2102 CONECT 2098 2082 2086 CONECT 2099 2086 2092 2093 CONECT 2100 2085 2092 CONECT 2101 2084 CONECT 2102 2097 2114 CONECT 2103 2090 CONECT 2104 2089 CONECT 2105 2094 CONECT 2106 2114 CONECT 2107 2114 CONECT 2108 2114 2115 CONECT 2109 2115 CONECT 2110 2115 CONECT 2111 2087 2115 CONECT 2112 2088 2091 CONECT 2113 2091 2095 CONECT 2114 2102 2106 2107 2108 CONECT 2115 2108 2109 2110 2111 CONECT 2116 2117 2119 CONECT 2117 2116 2133 CONECT 2118 2128 2131 CONECT 2119 2116 2120 2136 CONECT 2120 2119 2121 2135 CONECT 2121 2120 2133 2134 CONECT 2122 2123 2146 CONECT 2123 2122 2124 2147 CONECT 2124 2123 2125 2139 CONECT 2125 2124 2126 2138 CONECT 2126 2125 2147 2148 CONECT 2127 2134 2135 CONECT 2128 2118 2129 2134 CONECT 2129 2128 2130 2140 CONECT 2130 2129 2131 2148 CONECT 2131 2118 2130 2132 CONECT 2132 2131 2137 CONECT 2133 2117 2121 CONECT 2134 2121 2127 2128 CONECT 2135 2120 2127 CONECT 2136 2119 CONECT 2137 2132 2149 CONECT 2138 2125 CONECT 2139 2124 CONECT 2140 2129 CONECT 2141 2149 CONECT 2142 2149 CONECT 2143 2149 2150 CONECT 2144 2150 CONECT 2145 2150 CONECT 2146 2122 2150 CONECT 2147 2123 2126 CONECT 2148 2126 2130 CONECT 2149 2137 2141 2142 2143 CONECT 2150 2143 2144 2145 2146 MASTER 492 0 3 2 20 0 0 6 2517 3 105 24 END