data_9P9X # _entry.id 9P9X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9P9X pdb_00009p9x 10.2210/pdb9p9x/pdb WWPDB D_1000297215 ? ? BMRB 31252 ? 10.13018/BMR31252 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-08-26 ? 2 'Structure model' 1 1 2026-09-16 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' 11 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 9P9X _pdbx_database_status.recvd_initial_deposition_date 2025-06-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of the major PDGFRB promoter G-quadruplex with a broken-strand G22 fill-in' _pdbx_database_related.db_id 31252 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email yangdz@purdue.edu _pdbx_contact_author.name_first Danzhou _pdbx_contact_author.name_last Yang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7489-7111 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Han, Y.' 1 0000-0002-1034-2958 'Dickerhoff, J.' 2 0000-0002-3197-9472 'Yang, D.' 3 0000-0001-7489-7111 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Nucleic Acids Res.' NARHAD 0389 1362-4962 ? ? 54 ? ? ? ;Structures and dynamics of the major G-quadruplex in the human PDGFR-beta gene promoter: insights into vacancy G-quadruplex formation. ; 2026 ? 10.1093/nar/gkag843 42695283 ? ? ? ? ? ? ? ? ? US ? ? 1 'J Am Chem Soc' JACSAT ? 1520-5126 ? ? 134 ? 13220 13223 ;The major G-quadruplex formed in the human platelet-derived growth factor receptor beta promoter adopts a novel broken-strand structure in K+ solution. ; 2012 ? 10.1021/ja305764d 22866911 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Han, Y.' 1 ? primary 'Dickerhoff, J.' 2 0000-0002-3197-9472 primary 'Yang, D.' 3 0000-0001-7489-7111 1 'Chen, Y.' 4 ? 1 'Agrawal, P.' 5 ? 1 'Brown, R.V.' 6 ? 1 'Hatzakis, E.' 7 ? 1 'Hurley, L.' 8 ? 1 'Yang, D.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*AP*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*GP*CP*AP*GP*GP*G)-3') ; _entity.formula_weight 7013.503 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DA)(DA)(DG)(DG)(DG)(DA)(DG)(DG)(DG)(DC)(DG)(DG)(DC)(DG)(DG)(DG)(DG)(DC)(DA)(DG) (DG)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can AAGGGAGGGCGGCGGGGCAGGG _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DA n 1 7 DG n 1 8 DG n 1 9 DG n 1 10 DC n 1 11 DG n 1 12 DG n 1 13 DC n 1 14 DG n 1 15 DG n 1 16 DG n 1 17 DG n 1 18 DC n 1 19 DA n 1 20 DG n 1 21 DG n 1 22 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 22 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA X . n A 1 2 DA 2 2 2 DA DA X . n A 1 3 DG 3 3 3 DG DG X . n A 1 4 DG 4 4 4 DG DG X . n A 1 5 DG 5 5 5 DG DG X . n A 1 6 DA 6 6 6 DA DA X . n A 1 7 DG 7 7 7 DG DG X . n A 1 8 DG 8 8 8 DG DG X . n A 1 9 DG 9 9 9 DG DG X . n A 1 10 DC 10 10 10 DC DC X . n A 1 11 DG 11 11 11 DG DG X . n A 1 12 DG 12 12 12 DG DG X . n A 1 13 DC 13 13 13 DC DC X . n A 1 14 DG 14 14 14 DG DG X . n A 1 15 DG 15 15 15 DG DG X . n A 1 16 DG 16 16 16 DG DG X . n A 1 17 DG 17 17 17 DG DG X . n A 1 18 DC 18 18 18 DC DC X . n A 1 19 DA 19 19 19 DA DA X . n A 1 20 DG 20 20 20 DG DG X . n A 1 21 DG 21 21 21 DG DG X . n A 1 22 DG 22 22 22 DG DG X . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9P9X _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 9P9X _struct.title 'Solution structure of the major PDGFRB promoter G-quadruplex with a broken-strand G22 fill-in' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9P9X _struct_keywords.text 'G-quadruplex DNA, PDGFRB, DNA' _struct_keywords.pdbx_keywords DNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9P9X _struct_ref.pdbx_db_accession 9P9X _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9P9X _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9P9X _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 22 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 7 O6 ? ? X DG 3 X DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 7 N7 ? ? X DG 3 X DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 14 N2 ? ? X DG 3 X DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 14 N1 ? ? X DG 3 X DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 8 O6 ? ? X DG 4 X DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 8 N7 ? ? X DG 4 X DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 15 N2 ? ? X DG 4 X DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 15 N1 ? ? X DG 4 X DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 9 O6 ? ? X DG 5 X DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 9 N7 ? ? X DG 5 X DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 16 N2 ? ? X DG 5 X DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 16 N1 ? ? X DG 5 X DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DG 11 O6 ? ? X DG 7 X DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DG 11 N7 ? ? X DG 7 X DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 12 O6 ? ? X DG 8 X DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 12 N7 ? ? X DG 8 X DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 22 O6 ? ? X DG 9 X DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 22 N7 ? ? X DG 9 X DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DG 14 O6 ? ? X DG 11 X DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DG 14 N7 ? ? X DG 11 X DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 12 N1 ? ? ? 1_555 A DG 15 O6 ? ? X DG 12 X DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 12 N2 ? ? ? 1_555 A DG 15 N7 ? ? X DG 12 X DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 16 N7 ? ? ? 1_555 A DG 22 N2 ? ? X DG 16 X DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 16 O6 ? ? ? 1_555 A DG 22 N1 ? ? X DG 16 X DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 17 N1 ? ? ? 1_555 A DG 21 N7 ? ? X DG 17 X DG 21 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog26 hydrog ? ? A DG 17 N2 ? ? ? 1_555 A DG 21 O6 ? ? X DG 17 X DG 21 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 9P9X _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 112.87 108.30 4.57 0.30 N 2 1 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.85 117.00 -3.15 0.50 N 3 1 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.46 117.70 3.76 0.50 N 4 1 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 113.10 118.60 -5.50 0.60 N 5 1 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.44 117.00 -3.56 0.50 N 6 1 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.32 117.70 3.62 0.50 N 7 1 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.91 118.60 -5.69 0.60 N 8 1 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.63 108.30 2.33 0.30 N 9 1 "O4'" X DG 5 ? ? "C1'" X DG 5 ? ? N9 X DG 5 ? ? 110.35 108.30 2.05 0.30 N 10 1 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.64 117.00 -3.36 0.50 N 11 1 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.48 117.70 3.78 0.50 N 12 1 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.84 118.60 -5.76 0.60 N 13 1 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.49 108.30 2.19 0.30 N 14 1 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 110.48 108.30 2.18 0.30 N 15 1 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.09 121.90 -4.81 0.70 N 16 1 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.98 108.30 2.68 0.30 N 17 1 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 110.60 108.30 2.30 0.30 N 18 1 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 111.05 108.30 2.75 0.30 N 19 1 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.21 121.90 -4.69 0.70 N 20 1 "O4'" X DG 14 ? ? "C1'" X DG 14 ? ? N9 X DG 14 ? ? 110.16 108.30 1.86 0.30 N 21 1 "O4'" X DG 17 ? ? "C1'" X DG 17 ? ? N9 X DG 17 ? ? 112.18 108.30 3.88 0.30 N 22 1 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.30 121.90 -4.60 0.70 N 23 1 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 111.17 108.30 2.87 0.30 N 24 1 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.66 117.00 -3.34 0.50 N 25 1 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.53 117.70 3.83 0.50 N 26 1 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.05 118.60 -5.55 0.60 N 27 1 "O4'" X DG 21 ? ? "C1'" X DG 21 ? ? N9 X DG 21 ? ? 112.52 108.30 4.22 0.30 N 28 1 "O4'" X DG 22 ? ? "C1'" X DG 22 ? ? N9 X DG 22 ? ? 112.09 108.30 3.79 0.30 N 29 2 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 112.91 108.30 4.61 0.30 N 30 2 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.79 117.00 -3.21 0.50 N 31 2 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.54 117.70 3.84 0.50 N 32 2 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 113.00 118.60 -5.60 0.60 N 33 2 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.48 117.00 -3.52 0.50 N 34 2 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.41 117.70 3.71 0.50 N 35 2 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.78 118.60 -5.82 0.60 N 36 2 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.85 108.30 2.55 0.30 N 37 2 "O4'" X DG 5 ? ? "C1'" X DG 5 ? ? N9 X DG 5 ? ? 110.78 108.30 2.48 0.30 N 38 2 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.82 117.00 -3.18 0.50 N 39 2 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.42 117.70 3.72 0.50 N 40 2 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.85 118.60 -5.75 0.60 N 41 2 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.70 108.30 2.40 0.30 N 42 2 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 110.34 108.30 2.04 0.30 N 43 2 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.18 121.90 -4.72 0.70 N 44 2 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.67 108.30 2.37 0.30 N 45 2 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 111.63 108.30 3.33 0.30 N 46 2 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.21 121.90 -4.69 0.70 N 47 2 "O4'" X DG 14 ? ? "C1'" X DG 14 ? ? N9 X DG 14 ? ? 111.05 108.30 2.75 0.30 N 48 2 "O4'" X DG 17 ? ? "C1'" X DG 17 ? ? N9 X DG 17 ? ? 111.80 108.30 3.50 0.30 N 49 2 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.31 121.90 -4.59 0.70 N 50 2 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 111.09 108.30 2.79 0.30 N 51 2 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.75 117.00 -3.25 0.50 N 52 2 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.41 117.70 3.71 0.50 N 53 2 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.02 118.60 -5.58 0.60 N 54 2 "O4'" X DG 21 ? ? "C1'" X DG 21 ? ? N9 X DG 21 ? ? 112.80 108.30 4.50 0.30 N 55 2 "O4'" X DG 22 ? ? "C1'" X DG 22 ? ? N9 X DG 22 ? ? 111.27 108.30 2.97 0.30 N 56 3 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 112.48 108.30 4.18 0.30 N 57 3 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.79 117.00 -3.21 0.50 N 58 3 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.61 117.70 3.91 0.50 N 59 3 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 112.97 118.60 -5.63 0.60 N 60 3 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.43 117.00 -3.57 0.50 N 61 3 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.43 117.70 3.73 0.50 N 62 3 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.84 118.60 -5.76 0.60 N 63 3 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 111.05 108.30 2.75 0.30 N 64 3 "O4'" X DG 5 ? ? "C1'" X DG 5 ? ? N9 X DG 5 ? ? 110.69 108.30 2.39 0.30 N 65 3 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.81 117.00 -3.19 0.50 N 66 3 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.39 117.70 3.69 0.50 N 67 3 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 113.02 118.60 -5.58 0.60 N 68 3 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.67 108.30 2.37 0.30 N 69 3 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 110.43 108.30 2.13 0.30 N 70 3 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.05 121.90 -4.85 0.70 N 71 3 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.76 108.30 2.46 0.30 N 72 3 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 111.02 108.30 2.72 0.30 N 73 3 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.15 108.30 1.85 0.30 N 74 3 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.34 121.90 -4.56 0.70 N 75 3 "O4'" X DG 14 ? ? "C1'" X DG 14 ? ? N9 X DG 14 ? ? 111.22 108.30 2.92 0.30 N 76 3 N3 X DG 15 ? ? C2 X DG 15 ? ? N2 X DG 15 ? ? 115.65 119.90 -4.25 0.70 N 77 3 "O4'" X DG 17 ? ? "C1'" X DG 17 ? ? N9 X DG 17 ? ? 112.03 108.30 3.73 0.30 N 78 3 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.32 121.90 -4.58 0.70 N 79 3 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 110.15 108.30 1.85 0.30 N 80 3 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.79 117.00 -3.21 0.50 N 81 3 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.33 117.70 3.63 0.50 N 82 3 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.02 118.60 -5.58 0.60 N 83 3 "O4'" X DG 21 ? ? "C1'" X DG 21 ? ? N9 X DG 21 ? ? 113.56 108.30 5.26 0.30 N 84 3 "O4'" X DG 22 ? ? "C1'" X DG 22 ? ? N9 X DG 22 ? ? 111.29 108.30 2.99 0.30 N 85 4 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 112.87 108.30 4.57 0.30 N 86 4 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.88 117.00 -3.12 0.50 N 87 4 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.48 117.70 3.78 0.50 N 88 4 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 113.05 118.60 -5.55 0.60 N 89 4 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.42 117.00 -3.58 0.50 N 90 4 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.35 117.70 3.65 0.50 N 91 4 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.88 118.60 -5.72 0.60 N 92 4 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.22 108.30 1.92 0.30 N 93 4 "O4'" X DG 5 ? ? "C1'" X DG 5 ? ? N9 X DG 5 ? ? 110.28 108.30 1.98 0.30 N 94 4 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.74 117.00 -3.26 0.50 N 95 4 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.37 117.70 3.67 0.50 N 96 4 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.99 118.60 -5.61 0.60 N 97 4 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.51 108.30 2.21 0.30 N 98 4 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 110.38 108.30 2.08 0.30 N 99 4 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.19 121.90 -4.71 0.70 N 100 4 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.61 108.30 2.31 0.30 N 101 4 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 110.13 108.30 1.83 0.30 N 102 4 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.24 108.30 1.94 0.30 N 103 4 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.26 121.90 -4.64 0.70 N 104 4 "O4'" X DG 14 ? ? "C1'" X DG 14 ? ? N9 X DG 14 ? ? 111.05 108.30 2.75 0.30 N 105 4 "O4'" X DG 17 ? ? "C1'" X DG 17 ? ? N9 X DG 17 ? ? 111.83 108.30 3.53 0.30 N 106 4 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.49 121.90 -4.41 0.70 N 107 4 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.79 117.00 -3.21 0.50 N 108 4 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.35 117.70 3.65 0.50 N 109 4 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.04 118.60 -5.56 0.60 N 110 4 "O4'" X DG 21 ? ? "C1'" X DG 21 ? ? N9 X DG 21 ? ? 113.40 108.30 5.10 0.30 N 111 4 "O4'" X DG 22 ? ? "C1'" X DG 22 ? ? N9 X DG 22 ? ? 111.29 108.30 2.99 0.30 N 112 5 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 112.57 108.30 4.27 0.30 N 113 5 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.81 117.00 -3.19 0.50 N 114 5 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.55 117.70 3.85 0.50 N 115 5 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 113.04 118.60 -5.56 0.60 N 116 5 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.53 117.00 -3.47 0.50 N 117 5 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.33 117.70 3.63 0.50 N 118 5 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.80 118.60 -5.80 0.60 N 119 5 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 111.38 108.30 3.08 0.30 N 120 5 "O4'" X DG 5 ? ? "C1'" X DG 5 ? ? N9 X DG 5 ? ? 110.13 108.30 1.83 0.30 N 121 5 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.77 117.00 -3.23 0.50 N 122 5 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.41 117.70 3.71 0.50 N 123 5 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 113.04 118.60 -5.56 0.60 N 124 5 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.53 108.30 2.23 0.30 N 125 5 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 110.38 108.30 2.08 0.30 N 126 5 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.07 121.90 -4.83 0.70 N 127 5 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.81 108.30 2.51 0.30 N 128 5 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 111.95 108.30 3.65 0.30 N 129 5 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.17 121.90 -4.73 0.70 N 130 5 "O4'" X DG 14 ? ? "C1'" X DG 14 ? ? N9 X DG 14 ? ? 110.40 108.30 2.10 0.30 N 131 5 "O4'" X DG 17 ? ? "C1'" X DG 17 ? ? N9 X DG 17 ? ? 112.12 108.30 3.82 0.30 N 132 5 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.41 121.90 -4.49 0.70 N 133 5 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 110.51 108.30 2.21 0.30 N 134 5 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.75 117.00 -3.25 0.50 N 135 5 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.40 117.70 3.70 0.50 N 136 5 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.17 118.60 -5.43 0.60 N 137 5 "O4'" X DG 21 ? ? "C1'" X DG 21 ? ? N9 X DG 21 ? ? 113.71 108.30 5.41 0.30 N 138 5 "O4'" X DG 22 ? ? "C1'" X DG 22 ? ? N9 X DG 22 ? ? 111.48 108.30 3.18 0.30 N 139 6 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 112.71 108.30 4.41 0.30 N 140 6 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.89 117.00 -3.11 0.50 N 141 6 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.46 117.70 3.76 0.50 N 142 6 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 113.03 118.60 -5.57 0.60 N 143 6 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.42 117.00 -3.58 0.50 N 144 6 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.43 117.70 3.73 0.50 N 145 6 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.74 118.60 -5.86 0.60 N 146 6 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 111.13 108.30 2.83 0.30 N 147 6 "O4'" X DG 5 ? ? "C1'" X DG 5 ? ? N9 X DG 5 ? ? 110.29 108.30 1.99 0.30 N 148 6 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.75 117.00 -3.25 0.50 N 149 6 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.43 117.70 3.73 0.50 N 150 6 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.81 118.60 -5.79 0.60 N 151 6 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.31 108.30 2.01 0.30 N 152 6 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 110.34 108.30 2.04 0.30 N 153 6 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 110.37 108.30 2.07 0.30 N 154 6 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.11 121.90 -4.79 0.70 N 155 6 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.77 108.30 2.47 0.30 N 156 6 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 111.33 108.30 3.03 0.30 N 157 6 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 116.92 121.90 -4.98 0.70 N 158 6 "O4'" X DG 17 ? ? "C1'" X DG 17 ? ? N9 X DG 17 ? ? 111.68 108.30 3.38 0.30 N 159 6 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.26 121.90 -4.64 0.70 N 160 6 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 110.83 108.30 2.53 0.30 N 161 6 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.75 117.00 -3.25 0.50 N 162 6 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.45 117.70 3.75 0.50 N 163 6 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.10 118.60 -5.50 0.60 N 164 6 "O4'" X DG 21 ? ? "C1'" X DG 21 ? ? N9 X DG 21 ? ? 113.20 108.30 4.90 0.30 N 165 6 "O4'" X DG 22 ? ? "C1'" X DG 22 ? ? N9 X DG 22 ? ? 111.32 108.30 3.02 0.30 N 166 7 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 112.60 108.30 4.30 0.30 N 167 7 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.81 117.00 -3.19 0.50 N 168 7 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.55 117.70 3.85 0.50 N 169 7 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 112.98 118.60 -5.62 0.60 N 170 7 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.39 117.00 -3.61 0.50 N 171 7 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.44 117.70 3.74 0.50 N 172 7 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.85 118.60 -5.75 0.60 N 173 7 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.15 108.30 1.85 0.30 N 174 7 "O4'" X DG 5 ? ? "C1'" X DG 5 ? ? N9 X DG 5 ? ? 110.45 108.30 2.15 0.30 N 175 7 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.70 117.00 -3.30 0.50 N 176 7 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.49 117.70 3.79 0.50 N 177 7 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 113.07 118.60 -5.53 0.60 N 178 7 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.70 108.30 2.40 0.30 N 179 7 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.15 121.90 -4.75 0.70 N 180 7 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.55 108.30 2.25 0.30 N 181 7 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 111.63 108.30 3.33 0.30 N 182 7 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.33 121.90 -4.57 0.70 N 183 7 "O4'" X DG 14 ? ? "C1'" X DG 14 ? ? N9 X DG 14 ? ? 111.06 108.30 2.76 0.30 N 184 7 "O4'" X DG 17 ? ? "C1'" X DG 17 ? ? N9 X DG 17 ? ? 112.16 108.30 3.86 0.30 N 185 7 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.15 121.90 -4.75 0.70 N 186 7 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 110.89 108.30 2.59 0.30 N 187 7 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.88 117.00 -3.12 0.50 N 188 7 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.41 117.70 3.71 0.50 N 189 7 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.33 118.60 -5.27 0.60 N 190 7 "O4'" X DG 21 ? ? "C1'" X DG 21 ? ? N9 X DG 21 ? ? 112.78 108.30 4.48 0.30 N 191 7 "O4'" X DG 22 ? ? "C1'" X DG 22 ? ? N9 X DG 22 ? ? 111.02 108.30 2.72 0.30 N 192 8 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 112.86 108.30 4.56 0.30 N 193 8 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.69 117.00 -3.31 0.50 N 194 8 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.61 117.70 3.91 0.50 N 195 8 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 113.00 118.60 -5.60 0.60 N 196 8 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.41 117.00 -3.59 0.50 N 197 8 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.42 117.70 3.72 0.50 N 198 8 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.87 118.60 -5.73 0.60 N 199 8 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.16 108.30 1.86 0.30 N 200 8 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.75 117.00 -3.25 0.50 N 201 8 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.40 117.70 3.70 0.50 N 202 8 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.97 118.60 -5.63 0.60 N 203 8 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.41 108.30 2.11 0.30 N 204 8 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 110.49 108.30 2.19 0.30 N 205 8 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.16 121.90 -4.74 0.70 N 206 8 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.76 108.30 2.46 0.30 N 207 8 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 111.29 108.30 2.99 0.30 N 208 8 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.34 121.90 -4.56 0.70 N 209 8 "O4'" X DG 14 ? ? "C1'" X DG 14 ? ? N9 X DG 14 ? ? 110.83 108.30 2.53 0.30 N 210 8 "O4'" X DG 17 ? ? "C1'" X DG 17 ? ? N9 X DG 17 ? ? 111.49 108.30 3.19 0.30 N 211 8 "O4'" X DC 18 ? ? "C4'" X DC 18 ? ? "C3'" X DC 18 ? ? 109.73 106.00 3.73 0.60 N 212 8 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.34 121.90 -4.56 0.70 N 213 8 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.76 117.00 -3.24 0.50 N 214 8 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.37 117.70 3.67 0.50 N 215 8 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.28 118.60 -5.32 0.60 N 216 8 "O4'" X DG 21 ? ? "C1'" X DG 21 ? ? N9 X DG 21 ? ? 111.24 108.30 2.94 0.30 N 217 8 "O4'" X DG 22 ? ? "C1'" X DG 22 ? ? N9 X DG 22 ? ? 111.18 108.30 2.88 0.30 N 218 9 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 112.49 108.30 4.19 0.30 N 219 9 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.83 117.00 -3.17 0.50 N 220 9 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.57 117.70 3.87 0.50 N 221 9 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 112.85 118.60 -5.75 0.60 N 222 9 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.53 117.00 -3.47 0.50 N 223 9 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.36 117.70 3.66 0.50 N 224 9 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.94 118.60 -5.66 0.60 N 225 9 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.15 108.30 1.85 0.30 N 226 9 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.72 117.00 -3.28 0.50 N 227 9 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.42 117.70 3.72 0.50 N 228 9 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 113.06 118.60 -5.54 0.60 N 229 9 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 111.88 108.30 3.58 0.30 N 230 9 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 110.14 108.30 1.84 0.30 N 231 9 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 110.89 108.30 2.59 0.30 N 232 9 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.09 121.90 -4.81 0.70 N 233 9 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.35 108.30 2.05 0.30 N 234 9 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 111.10 108.30 2.80 0.30 N 235 9 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.46 108.30 2.16 0.30 N 236 9 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.35 121.90 -4.55 0.70 N 237 9 "O4'" X DG 14 ? ? "C1'" X DG 14 ? ? N9 X DG 14 ? ? 110.85 108.30 2.55 0.30 N 238 9 "O4'" X DG 17 ? ? "C1'" X DG 17 ? ? N9 X DG 17 ? ? 110.95 108.30 2.65 0.30 N 239 9 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.29 121.90 -4.61 0.70 N 240 9 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.82 117.00 -3.18 0.50 N 241 9 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.29 117.70 3.59 0.50 N 242 9 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.00 118.60 -5.60 0.60 N 243 9 "O4'" X DG 21 ? ? "C1'" X DG 21 ? ? N9 X DG 21 ? ? 112.62 108.30 4.32 0.30 N 244 9 "O4'" X DG 22 ? ? "C1'" X DG 22 ? ? N9 X DG 22 ? ? 111.09 108.30 2.79 0.30 N 245 10 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 112.88 108.30 4.58 0.30 N 246 10 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.90 117.00 -3.10 0.50 N 247 10 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.41 117.70 3.71 0.50 N 248 10 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 113.26 118.60 -5.34 0.60 N 249 10 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.46 117.00 -3.54 0.50 N 250 10 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.41 117.70 3.71 0.50 N 251 10 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.90 118.60 -5.70 0.60 N 252 10 "O4'" X DG 5 ? ? "C1'" X DG 5 ? ? N9 X DG 5 ? ? 110.14 108.30 1.84 0.30 N 253 10 "O4'" X DA 6 ? ? "C1'" X DA 6 ? ? N9 X DA 6 ? ? 110.12 108.30 1.82 0.30 N 254 10 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.80 117.00 -3.20 0.50 N 255 10 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.33 117.70 3.63 0.50 N 256 10 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 113.06 118.60 -5.54 0.60 N 257 10 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.50 108.30 2.20 0.30 N 258 10 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 110.49 108.30 2.19 0.30 N 259 10 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.14 121.90 -4.76 0.70 N 260 10 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.46 108.30 2.16 0.30 N 261 10 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 110.69 108.30 2.39 0.30 N 262 10 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.45 108.30 2.15 0.30 N 263 10 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.22 121.90 -4.68 0.70 N 264 10 "O4'" X DG 17 ? ? "C1'" X DG 17 ? ? N9 X DG 17 ? ? 112.53 108.30 4.23 0.30 N 265 10 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.33 121.90 -4.57 0.70 N 266 10 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 110.33 108.30 2.03 0.30 N 267 10 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.91 117.00 -3.09 0.50 N 268 10 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.36 117.70 3.66 0.50 N 269 10 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.24 118.60 -5.36 0.60 N 270 10 "O4'" X DG 21 ? ? "C1'" X DG 21 ? ? N9 X DG 21 ? ? 114.57 108.30 6.27 0.30 N 271 10 "O4'" X DG 22 ? ? "C1'" X DG 22 ? ? N9 X DG 22 ? ? 111.77 108.30 3.47 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG X 11 ? ? 0.058 'SIDE CHAIN' 2 1 DC X 13 ? ? 0.061 'SIDE CHAIN' 3 1 DG X 20 ? ? 0.077 'SIDE CHAIN' 4 2 DG X 20 ? ? 0.064 'SIDE CHAIN' 5 3 DG X 20 ? ? 0.098 'SIDE CHAIN' 6 4 DG X 20 ? ? 0.093 'SIDE CHAIN' 7 4 DG X 22 ? ? 0.063 'SIDE CHAIN' 8 5 DG X 20 ? ? 0.076 'SIDE CHAIN' 9 6 DG X 20 ? ? 0.093 'SIDE CHAIN' 10 7 DG X 20 ? ? 0.084 'SIDE CHAIN' 11 8 DG X 20 ? ? 0.083 'SIDE CHAIN' 12 9 DG X 20 ? ? 0.066 'SIDE CHAIN' 13 10 DG X 20 ? ? 0.095 'SIDE CHAIN' 14 10 DG X 21 ? ? 0.057 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 9P9X _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 9P9X _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;75 mM potassium chloride, 25 mM potassium phosphate, 0.73 mM DNA (5'-D(*AP*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*GP*CP*AP*GP*GP*G)-3'), 90% H2O/10% D2O ; '90% H2O/10% D2O' 22in_Sample1 solution ? 2 ;10 mM potassium phosphate, 1.63 mM DNA (5'-D(*AP*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*GP*CP*AP*GP*GP*G)-3'), 90% H2O/10% D2O ; '90% H2O/10% D2O' 22in_Sample2 solution ? 3 ;75 mM potassium chloride, 25 mM potassium phosphate, 1.36 mM DNA (5'-D(*AP*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*GP*CP*AP*GP*GP*G)-3'), 90% H2O/10% D2O ; '90% H2O/10% D2O' 22in_Sample3 solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'potassium chloride' 75 ? mM 'natural abundance' 1 'potassium phosphate' 25 ? mM 'natural abundance' 1 ;DNA (5'-D(*AP*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*GP*CP*AP*GP*GP*G)-3') ; 0.73 ? mM 'natural abundance' 2 'potassium phosphate' 10 ? mM 'natural abundance' 2 ;DNA (5'-D(*AP*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*GP*CP*AP*GP*GP*G)-3') ; 1.63 ? mM 'natural abundance' 3 'potassium chloride' 75 ? mM 'natural abundance' 3 'potassium phosphate' 25 ? mM 'natural abundance' 3 ;DNA (5'-D(*AP*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*GP*CP*AP*GP*GP*G)-3') ; 1.36 ? mM 'natural abundance' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 atm 1 7.0 100 ? ? mM 25C_100mM ? pH ? ? K 2 298 atm 1 7.0 10 ? ? mM 25C_10mM ? pH ? ? K 3 283 atm 1 7.0 100 ? ? mM 10C_100mM ? pH ? ? K 4 313 atm 1 7.0 100 ? ? mM 40C_100mM ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 4 1 '2D 1H-1H NOESY' 1 isotropic 3 4 1 '2D 1H-13C HSQC' 1 isotropic 4 2 2 '2D 1H-1H NOESY' 1 isotropic 5 2 2 '2D 1H-13C HSQC' 1 isotropic 6 3 3 '2D 1H-1H NOESY' 1 isotropic # loop_ _pdbx_nmr_refine.entry_id _pdbx_nmr_refine.method _pdbx_nmr_refine.details _pdbx_nmr_refine.software_ordinal 9P9X 'simulated annealing' ? 4 9P9X 'simulated annealing' ? 6 9P9X 'molecular dynamics' ? 5 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' 'CcpNmr Analysis' 2.4 CCPN 2 'peak picking' 'CcpNmr Analysis' 2.4 CCPN 3 processing TopSpin ? 'Bruker Biospin' 4 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman' 5 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman' 6 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 # _ndb_struct_conf_na.entry_id 9P9X _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 21 1_555 A DG 17 1_555 -5.631 -0.374 -0.814 -17.604 -10.054 -113.373 1 X_DG21:DG17_X X 21 ? X 17 ? 7 4 1 A DG 5 1_555 A DG 16 1_555 -1.955 -3.231 0.392 -10.195 0.700 89.269 2 X_DG5:DG16_X X 5 ? X 16 ? 6 3 1 A DG 9 1_555 A DG 22 1_555 1.952 3.172 -0.157 9.131 -0.237 -92.036 3 X_DG9:DG22_X X 9 ? X 22 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 21 1_555 A DG 17 1_555 A DG 5 1_555 A DG 16 1_555 -2.028 2.479 1.472 159.809 70.840 20.914 1.088 1.359 -0.568 36.281 -81.847 174.892 1 XX_DG21DG5:DG16DG17_XX X 21 ? X 17 ? X 5 ? X 16 ? 1 A DG 5 1_555 A DG 16 1_555 A DG 9 1_555 A DG 22 1_555 2.069 3.145 0.075 -5.774 0.339 -179.600 -1.573 1.035 0.076 -0.169 -2.887 -179.600 2 XX_DG5DG9:DG22DG16_XX X 5 ? X 16 ? X 9 ? X 22 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' R01CA177585 1 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' 'U01 CA240346' 2 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' 1R01CA153821 3 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' P30CA023168 4 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 9P9X _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ #