data_9PDT # _entry.id 9PDT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.415 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9PDT pdb_00009pdt 10.2210/pdb9pdt/pdb WWPDB D_1000297625 ? ? EMDB EMD-71543 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-07-08 ? 2 'EM metadata' 1 0 2026-07-08 ? 3 'Half map' 1 0 2026-07-08 1 4 'Half map' 1 0 2026-07-08 2 5 Image 1 0 2026-07-08 ? 6 'Primary map' 1 0 2026-07-08 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Half map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 Image repository 'Initial release' ? ? 6 6 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9PDT _pdbx_database_status.recvd_initial_deposition_date 2025-07-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 9PD7 unspecified EMDB 'YG18 peptide - C4 thin tube' EMD-71543 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email ehe2n@virginia.edu _pdbx_contact_author.name_first Edward _pdbx_contact_author.name_last Egelman _pdbx_contact_author.name_mi H. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4844-5212 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sonani, R.R.' 1 ? 'Distaffen, H.E.' 2 ? 'Nilsson, B.L.' 3 ? 'Egelman, E.H.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'YG18 peptide - open tube' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sonani, R.R.' 1 ? primary 'Egelman, E.H.' 2 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'YG18 peptide' _entity.formula_weight 1075.281 _entity.pdbx_number_of_molecules 41 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)FKFGFKFE(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XFKFGFKFEX _entity_poly.pdbx_strand_id T,M,V,X,Y,N,Z,a,b,d,e,Q,i,R,l,m,n,S,o,p,q,w,z,1,2,3,4,5,6,7,9,AB,AC,AD,AE,AF,AG,AH,AI,AL,AM _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 PHE n 1 3 LYS n 1 4 PHE n 1 5 GLY n 1 6 PHE n 1 7 LYS n 1 8 PHE n 1 9 GLU n 1 10 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 8 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'synthetic construct' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 32630 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 1 ACE 5CR T . n A 1 2 PHE 2 1 1 PHE 5CR T . n A 1 3 LYS 3 2 2 LYS LYS T . n A 1 4 PHE 4 3 3 PHE PHE T . n A 1 5 GLY 5 4 4 GLY GLY T . n A 1 6 PHE 6 5 5 PHE PHE T . n A 1 7 LYS 7 6 6 LYS LYS T . n A 1 8 PHE 8 7 7 PHE PHE T . n A 1 9 GLU 9 8 8 GLU GMA T . n A 1 10 NH2 10 9 8 NH2 GMA T . n B 1 1 ACE 1 0 1 ACE 5CR M . n B 1 2 PHE 2 1 1 PHE 5CR M . n B 1 3 LYS 3 2 2 LYS LYS M . n B 1 4 PHE 4 3 3 PHE PHE M . n B 1 5 GLY 5 4 4 GLY GLY M . n B 1 6 PHE 6 5 5 PHE PHE M . n B 1 7 LYS 7 6 6 LYS LYS M . n B 1 8 PHE 8 7 7 PHE PHE M . n B 1 9 GLU 9 8 8 GLU GMA M . n B 1 10 NH2 10 9 8 NH2 GMA M . n C 1 1 ACE 1 0 1 ACE 5CR V . n C 1 2 PHE 2 1 1 PHE 5CR V . n C 1 3 LYS 3 2 2 LYS LYS V . n C 1 4 PHE 4 3 3 PHE PHE V . n C 1 5 GLY 5 4 4 GLY GLY V . n C 1 6 PHE 6 5 5 PHE PHE V . n C 1 7 LYS 7 6 6 LYS LYS V . n C 1 8 PHE 8 7 7 PHE PHE V . n C 1 9 GLU 9 8 8 GLU GMA V . n C 1 10 NH2 10 9 8 NH2 GMA V . n D 1 1 ACE 1 0 1 ACE 5CR X . n D 1 2 PHE 2 1 1 PHE 5CR X . n D 1 3 LYS 3 2 2 LYS LYS X . n D 1 4 PHE 4 3 3 PHE PHE X . n D 1 5 GLY 5 4 4 GLY GLY X . n D 1 6 PHE 6 5 5 PHE PHE X . n D 1 7 LYS 7 6 6 LYS LYS X . n D 1 8 PHE 8 7 7 PHE PHE X . n D 1 9 GLU 9 8 8 GLU GMA X . n D 1 10 NH2 10 9 8 NH2 GMA X . n E 1 1 ACE 1 0 1 ACE 5CR Y . n E 1 2 PHE 2 1 1 PHE 5CR Y . n E 1 3 LYS 3 2 2 LYS LYS Y . n E 1 4 PHE 4 3 3 PHE PHE Y . n E 1 5 GLY 5 4 4 GLY GLY Y . n E 1 6 PHE 6 5 5 PHE PHE Y . n E 1 7 LYS 7 6 6 LYS LYS Y . n E 1 8 PHE 8 7 7 PHE PHE Y . n E 1 9 GLU 9 8 8 GLU GMA Y . n E 1 10 NH2 10 9 8 NH2 GMA Y . n F 1 1 ACE 1 0 1 ACE 5CR N . n F 1 2 PHE 2 1 1 PHE 5CR N . n F 1 3 LYS 3 2 2 LYS LYS N . n F 1 4 PHE 4 3 3 PHE PHE N . n F 1 5 GLY 5 4 4 GLY GLY N . n F 1 6 PHE 6 5 5 PHE PHE N . n F 1 7 LYS 7 6 6 LYS LYS N . n F 1 8 PHE 8 7 7 PHE PHE N . n F 1 9 GLU 9 8 8 GLU GMA N . n F 1 10 NH2 10 9 8 NH2 GMA N . n G 1 1 ACE 1 0 1 ACE 5CR Z . n G 1 2 PHE 2 1 1 PHE 5CR Z . n G 1 3 LYS 3 2 2 LYS LYS Z . n G 1 4 PHE 4 3 3 PHE PHE Z . n G 1 5 GLY 5 4 4 GLY GLY Z . n G 1 6 PHE 6 5 5 PHE PHE Z . n G 1 7 LYS 7 6 6 LYS LYS Z . n G 1 8 PHE 8 7 7 PHE PHE Z . n G 1 9 GLU 9 8 8 GLU GMA Z . n G 1 10 NH2 10 9 8 NH2 GMA Z . n H 1 1 ACE 1 0 1 ACE 5CR a . n H 1 2 PHE 2 1 1 PHE 5CR a . n H 1 3 LYS 3 2 2 LYS LYS a . n H 1 4 PHE 4 3 3 PHE PHE a . n H 1 5 GLY 5 4 4 GLY GLY a . n H 1 6 PHE 6 5 5 PHE PHE a . n H 1 7 LYS 7 6 6 LYS LYS a . n H 1 8 PHE 8 7 7 PHE PHE a . n H 1 9 GLU 9 8 8 GLU GMA a . n H 1 10 NH2 10 9 8 NH2 GMA a . n I 1 1 ACE 1 0 1 ACE 5CR b . n I 1 2 PHE 2 1 1 PHE 5CR b . n I 1 3 LYS 3 2 2 LYS LYS b . n I 1 4 PHE 4 3 3 PHE PHE b . n I 1 5 GLY 5 4 4 GLY GLY b . n I 1 6 PHE 6 5 5 PHE PHE b . n I 1 7 LYS 7 6 6 LYS LYS b . n I 1 8 PHE 8 7 7 PHE PHE b . n I 1 9 GLU 9 8 8 GLU GMA b . n I 1 10 NH2 10 9 8 NH2 GMA b . n J 1 1 ACE 1 0 1 ACE 5CR d . n J 1 2 PHE 2 1 1 PHE 5CR d . n J 1 3 LYS 3 2 2 LYS LYS d . n J 1 4 PHE 4 3 3 PHE PHE d . n J 1 5 GLY 5 4 4 GLY GLY d . n J 1 6 PHE 6 5 5 PHE PHE d . n J 1 7 LYS 7 6 6 LYS LYS d . n J 1 8 PHE 8 7 7 PHE PHE d . n J 1 9 GLU 9 8 8 GLU GMA d . n J 1 10 NH2 10 9 8 NH2 GMA d . n K 1 1 ACE 1 0 1 ACE 5CR e . n K 1 2 PHE 2 1 1 PHE 5CR e . n K 1 3 LYS 3 2 2 LYS LYS e . n K 1 4 PHE 4 3 3 PHE PHE e . n K 1 5 GLY 5 4 4 GLY GLY e . n K 1 6 PHE 6 5 5 PHE PHE e . n K 1 7 LYS 7 6 6 LYS LYS e . n K 1 8 PHE 8 7 7 PHE PHE e . n K 1 9 GLU 9 8 8 GLU GMA e . n K 1 10 NH2 10 9 8 NH2 GMA e . n L 1 1 ACE 1 0 1 ACE 5CR Q . n L 1 2 PHE 2 1 1 PHE 5CR Q . n L 1 3 LYS 3 2 2 LYS LYS Q . n L 1 4 PHE 4 3 3 PHE PHE Q . n L 1 5 GLY 5 4 4 GLY GLY Q . n L 1 6 PHE 6 5 5 PHE PHE Q . n L 1 7 LYS 7 6 6 LYS LYS Q . n L 1 8 PHE 8 7 7 PHE PHE Q . n L 1 9 GLU 9 8 8 GLU GMA Q . n L 1 10 NH2 10 9 8 NH2 GMA Q . n M 1 1 ACE 1 0 1 ACE 5CR i . n M 1 2 PHE 2 1 1 PHE 5CR i . n M 1 3 LYS 3 2 2 LYS LYS i . n M 1 4 PHE 4 3 3 PHE PHE i . n M 1 5 GLY 5 4 4 GLY GLY i . n M 1 6 PHE 6 5 5 PHE PHE i . n M 1 7 LYS 7 6 6 LYS LYS i . n M 1 8 PHE 8 7 7 PHE PHE i . n M 1 9 GLU 9 8 8 GLU GMA i . n M 1 10 NH2 10 9 8 NH2 GMA i . n N 1 1 ACE 1 0 1 ACE 5CR R . n N 1 2 PHE 2 1 1 PHE 5CR R . n N 1 3 LYS 3 2 2 LYS LYS R . n N 1 4 PHE 4 3 3 PHE PHE R . n N 1 5 GLY 5 4 4 GLY GLY R . n N 1 6 PHE 6 5 5 PHE PHE R . n N 1 7 LYS 7 6 6 LYS LYS R . n N 1 8 PHE 8 7 7 PHE PHE R . n N 1 9 GLU 9 8 8 GLU GMA R . n N 1 10 NH2 10 9 8 NH2 GMA R . n O 1 1 ACE 1 0 1 ACE 5CR l . n O 1 2 PHE 2 1 1 PHE 5CR l . n O 1 3 LYS 3 2 2 LYS LYS l . n O 1 4 PHE 4 3 3 PHE PHE l . n O 1 5 GLY 5 4 4 GLY GLY l . n O 1 6 PHE 6 5 5 PHE PHE l . n O 1 7 LYS 7 6 6 LYS LYS l . n O 1 8 PHE 8 7 7 PHE PHE l . n O 1 9 GLU 9 8 8 GLU GMA l . n O 1 10 NH2 10 9 8 NH2 GMA l . n P 1 1 ACE 1 0 1 ACE 5CR m . n P 1 2 PHE 2 1 1 PHE 5CR m . n P 1 3 LYS 3 2 2 LYS LYS m . n P 1 4 PHE 4 3 3 PHE PHE m . n P 1 5 GLY 5 4 4 GLY GLY m . n P 1 6 PHE 6 5 5 PHE PHE m . n P 1 7 LYS 7 6 6 LYS LYS m . n P 1 8 PHE 8 7 7 PHE PHE m . n P 1 9 GLU 9 8 8 GLU GMA m . n P 1 10 NH2 10 9 8 NH2 GMA m . n Q 1 1 ACE 1 0 1 ACE 5CR n . n Q 1 2 PHE 2 1 1 PHE 5CR n . n Q 1 3 LYS 3 2 2 LYS LYS n . n Q 1 4 PHE 4 3 3 PHE PHE n . n Q 1 5 GLY 5 4 4 GLY GLY n . n Q 1 6 PHE 6 5 5 PHE PHE n . n Q 1 7 LYS 7 6 6 LYS LYS n . n Q 1 8 PHE 8 7 7 PHE PHE n . n Q 1 9 GLU 9 8 8 GLU GMA n . n Q 1 10 NH2 10 9 8 NH2 GMA n . n R 1 1 ACE 1 0 1 ACE 5CR S . n R 1 2 PHE 2 1 1 PHE 5CR S . n R 1 3 LYS 3 2 2 LYS LYS S . n R 1 4 PHE 4 3 3 PHE PHE S . n R 1 5 GLY 5 4 4 GLY GLY S . n R 1 6 PHE 6 5 5 PHE PHE S . n R 1 7 LYS 7 6 6 LYS LYS S . n R 1 8 PHE 8 7 7 PHE PHE S . n R 1 9 GLU 9 8 8 GLU GMA S . n R 1 10 NH2 10 9 8 NH2 GMA S . n S 1 1 ACE 1 0 1 ACE 5CR o . n S 1 2 PHE 2 1 1 PHE 5CR o . n S 1 3 LYS 3 2 2 LYS LYS o . n S 1 4 PHE 4 3 3 PHE PHE o . n S 1 5 GLY 5 4 4 GLY GLY o . n S 1 6 PHE 6 5 5 PHE PHE o . n S 1 7 LYS 7 6 6 LYS LYS o . n S 1 8 PHE 8 7 7 PHE PHE o . n S 1 9 GLU 9 8 8 GLU GMA o . n S 1 10 NH2 10 9 8 NH2 GMA o . n T 1 1 ACE 1 0 1 ACE 5CR p . n T 1 2 PHE 2 1 1 PHE 5CR p . n T 1 3 LYS 3 2 2 LYS LYS p . n T 1 4 PHE 4 3 3 PHE PHE p . n T 1 5 GLY 5 4 4 GLY GLY p . n T 1 6 PHE 6 5 5 PHE PHE p . n T 1 7 LYS 7 6 6 LYS LYS p . n T 1 8 PHE 8 7 7 PHE PHE p . n T 1 9 GLU 9 8 8 GLU GMA p . n T 1 10 NH2 10 9 8 NH2 GMA p . n U 1 1 ACE 1 0 1 ACE 5CR q . n U 1 2 PHE 2 1 1 PHE 5CR q . n U 1 3 LYS 3 2 2 LYS LYS q . n U 1 4 PHE 4 3 3 PHE PHE q . n U 1 5 GLY 5 4 4 GLY GLY q . n U 1 6 PHE 6 5 5 PHE PHE q . n U 1 7 LYS 7 6 6 LYS LYS q . n U 1 8 PHE 8 7 7 PHE PHE q . n U 1 9 GLU 9 8 8 GLU GMA q . n U 1 10 NH2 10 9 8 NH2 GMA q . n V 1 1 ACE 1 0 1 ACE 5CR w . n V 1 2 PHE 2 1 1 PHE 5CR w . n V 1 3 LYS 3 2 2 LYS LYS w . n V 1 4 PHE 4 3 3 PHE PHE w . n V 1 5 GLY 5 4 4 GLY GLY w . n V 1 6 PHE 6 5 5 PHE PHE w . n V 1 7 LYS 7 6 6 LYS LYS w . n V 1 8 PHE 8 7 7 PHE PHE w . n V 1 9 GLU 9 8 8 GLU GMA w . n V 1 10 NH2 10 9 8 NH2 GMA w . n W 1 1 ACE 1 0 1 ACE 5CR z . n W 1 2 PHE 2 1 1 PHE 5CR z . n W 1 3 LYS 3 2 2 LYS LYS z . n W 1 4 PHE 4 3 3 PHE PHE z . n W 1 5 GLY 5 4 4 GLY GLY z . n W 1 6 PHE 6 5 5 PHE PHE z . n W 1 7 LYS 7 6 6 LYS LYS z . n W 1 8 PHE 8 7 7 PHE PHE z . n W 1 9 GLU 9 8 8 GLU GMA z . n W 1 10 NH2 10 9 8 NH2 GMA z . n X 1 1 ACE 1 0 1 ACE 5CR 1 . n X 1 2 PHE 2 1 1 PHE 5CR 1 . n X 1 3 LYS 3 2 2 LYS LYS 1 . n X 1 4 PHE 4 3 3 PHE PHE 1 . n X 1 5 GLY 5 4 4 GLY GLY 1 . n X 1 6 PHE 6 5 5 PHE PHE 1 . n X 1 7 LYS 7 6 6 LYS LYS 1 . n X 1 8 PHE 8 7 7 PHE PHE 1 . n X 1 9 GLU 9 8 8 GLU GMA 1 . n X 1 10 NH2 10 9 8 NH2 GMA 1 . n Y 1 1 ACE 1 0 1 ACE 5CR 2 . n Y 1 2 PHE 2 1 1 PHE 5CR 2 . n Y 1 3 LYS 3 2 2 LYS LYS 2 . n Y 1 4 PHE 4 3 3 PHE PHE 2 . n Y 1 5 GLY 5 4 4 GLY GLY 2 . n Y 1 6 PHE 6 5 5 PHE PHE 2 . n Y 1 7 LYS 7 6 6 LYS LYS 2 . n Y 1 8 PHE 8 7 7 PHE PHE 2 . n Y 1 9 GLU 9 8 8 GLU GMA 2 . n Y 1 10 NH2 10 9 8 NH2 GMA 2 . n Z 1 1 ACE 1 0 1 ACE 5CR 3 . n Z 1 2 PHE 2 1 1 PHE 5CR 3 . n Z 1 3 LYS 3 2 2 LYS LYS 3 . n Z 1 4 PHE 4 3 3 PHE PHE 3 . n Z 1 5 GLY 5 4 4 GLY GLY 3 . n Z 1 6 PHE 6 5 5 PHE PHE 3 . n Z 1 7 LYS 7 6 6 LYS LYS 3 . n Z 1 8 PHE 8 7 7 PHE PHE 3 . n Z 1 9 GLU 9 8 8 GLU GMA 3 . n Z 1 10 NH2 10 9 8 NH2 GMA 3 . n AA 1 1 ACE 1 0 1 ACE 5CR 4 . n AA 1 2 PHE 2 1 1 PHE 5CR 4 . n AA 1 3 LYS 3 2 2 LYS LYS 4 . n AA 1 4 PHE 4 3 3 PHE PHE 4 . n AA 1 5 GLY 5 4 4 GLY GLY 4 . n AA 1 6 PHE 6 5 5 PHE PHE 4 . n AA 1 7 LYS 7 6 6 LYS LYS 4 . n AA 1 8 PHE 8 7 7 PHE PHE 4 . n AA 1 9 GLU 9 8 8 GLU GMA 4 . n AA 1 10 NH2 10 9 8 NH2 GMA 4 . n BA 1 1 ACE 1 0 1 ACE 5CR 5 . n BA 1 2 PHE 2 1 1 PHE 5CR 5 . n BA 1 3 LYS 3 2 2 LYS LYS 5 . n BA 1 4 PHE 4 3 3 PHE PHE 5 . n BA 1 5 GLY 5 4 4 GLY GLY 5 . n BA 1 6 PHE 6 5 5 PHE PHE 5 . n BA 1 7 LYS 7 6 6 LYS LYS 5 . n BA 1 8 PHE 8 7 7 PHE PHE 5 . n BA 1 9 GLU 9 8 8 GLU GMA 5 . n BA 1 10 NH2 10 9 8 NH2 GMA 5 . n CA 1 1 ACE 1 0 1 ACE 5CR 6 . n CA 1 2 PHE 2 1 1 PHE 5CR 6 . n CA 1 3 LYS 3 2 2 LYS LYS 6 . n CA 1 4 PHE 4 3 3 PHE PHE 6 . n CA 1 5 GLY 5 4 4 GLY GLY 6 . n CA 1 6 PHE 6 5 5 PHE PHE 6 . n CA 1 7 LYS 7 6 6 LYS LYS 6 . n CA 1 8 PHE 8 7 7 PHE PHE 6 . n CA 1 9 GLU 9 8 8 GLU GMA 6 . n CA 1 10 NH2 10 9 8 NH2 GMA 6 . n DA 1 1 ACE 1 0 1 ACE 5CR 7 . n DA 1 2 PHE 2 1 1 PHE 5CR 7 . n DA 1 3 LYS 3 2 2 LYS LYS 7 . n DA 1 4 PHE 4 3 3 PHE PHE 7 . n DA 1 5 GLY 5 4 4 GLY GLY 7 . n DA 1 6 PHE 6 5 5 PHE PHE 7 . n DA 1 7 LYS 7 6 6 LYS LYS 7 . n DA 1 8 PHE 8 7 7 PHE PHE 7 . n DA 1 9 GLU 9 8 8 GLU GMA 7 . n DA 1 10 NH2 10 9 8 NH2 GMA 7 . n EA 1 1 ACE 1 0 1 ACE 5CR 9 . n EA 1 2 PHE 2 1 1 PHE 5CR 9 . n EA 1 3 LYS 3 2 2 LYS LYS 9 . n EA 1 4 PHE 4 3 3 PHE PHE 9 . n EA 1 5 GLY 5 4 4 GLY GLY 9 . n EA 1 6 PHE 6 5 5 PHE PHE 9 . n EA 1 7 LYS 7 6 6 LYS LYS 9 . n EA 1 8 PHE 8 7 7 PHE PHE 9 . n EA 1 9 GLU 9 8 8 GLU GMA 9 . n EA 1 10 NH2 10 9 8 NH2 GMA 9 . n FA 1 1 ACE 1 0 1 ACE 5CR AB . n FA 1 2 PHE 2 1 1 PHE 5CR AB . n FA 1 3 LYS 3 2 2 LYS LYS AB . n FA 1 4 PHE 4 3 3 PHE PHE AB . n FA 1 5 GLY 5 4 4 GLY GLY AB . n FA 1 6 PHE 6 5 5 PHE PHE AB . n FA 1 7 LYS 7 6 6 LYS LYS AB . n FA 1 8 PHE 8 7 7 PHE PHE AB . n FA 1 9 GLU 9 8 8 GLU GMA AB . n FA 1 10 NH2 10 9 8 NH2 GMA AB . n GA 1 1 ACE 1 0 1 ACE 5CR AC . n GA 1 2 PHE 2 1 1 PHE 5CR AC . n GA 1 3 LYS 3 2 2 LYS LYS AC . n GA 1 4 PHE 4 3 3 PHE PHE AC . n GA 1 5 GLY 5 4 4 GLY GLY AC . n GA 1 6 PHE 6 5 5 PHE PHE AC . n GA 1 7 LYS 7 6 6 LYS LYS AC . n GA 1 8 PHE 8 7 7 PHE PHE AC . n GA 1 9 GLU 9 8 8 GLU GMA AC . n GA 1 10 NH2 10 9 8 NH2 GMA AC . n HA 1 1 ACE 1 0 1 ACE 5CR AD . n HA 1 2 PHE 2 1 1 PHE 5CR AD . n HA 1 3 LYS 3 2 2 LYS LYS AD . n HA 1 4 PHE 4 3 3 PHE PHE AD . n HA 1 5 GLY 5 4 4 GLY GLY AD . n HA 1 6 PHE 6 5 5 PHE PHE AD . n HA 1 7 LYS 7 6 6 LYS LYS AD . n HA 1 8 PHE 8 7 7 PHE PHE AD . n HA 1 9 GLU 9 8 8 GLU GMA AD . n HA 1 10 NH2 10 9 8 NH2 GMA AD . n IA 1 1 ACE 1 0 1 ACE 5CR AE . n IA 1 2 PHE 2 1 1 PHE 5CR AE . n IA 1 3 LYS 3 2 2 LYS LYS AE . n IA 1 4 PHE 4 3 3 PHE PHE AE . n IA 1 5 GLY 5 4 4 GLY GLY AE . n IA 1 6 PHE 6 5 5 PHE PHE AE . n IA 1 7 LYS 7 6 6 LYS LYS AE . n IA 1 8 PHE 8 7 7 PHE PHE AE . n IA 1 9 GLU 9 8 8 GLU GMA AE . n IA 1 10 NH2 10 9 8 NH2 GMA AE . n JA 1 1 ACE 1 0 1 ACE 5CR AF . n JA 1 2 PHE 2 1 1 PHE 5CR AF . n JA 1 3 LYS 3 2 2 LYS LYS AF . n JA 1 4 PHE 4 3 3 PHE PHE AF . n JA 1 5 GLY 5 4 4 GLY GLY AF . n JA 1 6 PHE 6 5 5 PHE PHE AF . n JA 1 7 LYS 7 6 6 LYS LYS AF . n JA 1 8 PHE 8 7 7 PHE PHE AF . n JA 1 9 GLU 9 8 8 GLU GMA AF . n JA 1 10 NH2 10 9 8 NH2 GMA AF . n KA 1 1 ACE 1 0 1 ACE 5CR AG . n KA 1 2 PHE 2 1 1 PHE 5CR AG . n KA 1 3 LYS 3 2 2 LYS LYS AG . n KA 1 4 PHE 4 3 3 PHE PHE AG . n KA 1 5 GLY 5 4 4 GLY GLY AG . n KA 1 6 PHE 6 5 5 PHE PHE AG . n KA 1 7 LYS 7 6 6 LYS LYS AG . n KA 1 8 PHE 8 7 7 PHE PHE AG . n KA 1 9 GLU 9 8 8 GLU GMA AG . n KA 1 10 NH2 10 9 8 NH2 GMA AG . n LA 1 1 ACE 1 0 1 ACE 5CR AH . n LA 1 2 PHE 2 1 1 PHE 5CR AH . n LA 1 3 LYS 3 2 2 LYS LYS AH . n LA 1 4 PHE 4 3 3 PHE PHE AH . n LA 1 5 GLY 5 4 4 GLY GLY AH . n LA 1 6 PHE 6 5 5 PHE PHE AH . n LA 1 7 LYS 7 6 6 LYS LYS AH . n LA 1 8 PHE 8 7 7 PHE PHE AH . n LA 1 9 GLU 9 8 8 GLU GMA AH . n LA 1 10 NH2 10 9 8 NH2 GMA AH . n MA 1 1 ACE 1 0 1 ACE 5CR AI . n MA 1 2 PHE 2 1 1 PHE 5CR AI . n MA 1 3 LYS 3 2 2 LYS LYS AI . n MA 1 4 PHE 4 3 3 PHE PHE AI . n MA 1 5 GLY 5 4 4 GLY GLY AI . n MA 1 6 PHE 6 5 5 PHE PHE AI . n MA 1 7 LYS 7 6 6 LYS LYS AI . n MA 1 8 PHE 8 7 7 PHE PHE AI . n MA 1 9 GLU 9 8 8 GLU GMA AI . n MA 1 10 NH2 10 9 8 NH2 GMA AI . n NA 1 1 ACE 1 0 1 ACE 5CR AL . n NA 1 2 PHE 2 1 1 PHE 5CR AL . n NA 1 3 LYS 3 2 2 LYS LYS AL . n NA 1 4 PHE 4 3 3 PHE PHE AL . n NA 1 5 GLY 5 4 4 GLY GLY AL . n NA 1 6 PHE 6 5 5 PHE PHE AL . n NA 1 7 LYS 7 6 6 LYS LYS AL . n NA 1 8 PHE 8 7 7 PHE PHE AL . n NA 1 9 GLU 9 8 8 GLU GMA AL . n NA 1 10 NH2 10 9 8 NH2 GMA AL . n OA 1 1 ACE 1 0 1 ACE 5CR AM . n OA 1 2 PHE 2 1 1 PHE 5CR AM . n OA 1 3 LYS 3 2 2 LYS LYS AM . n OA 1 4 PHE 4 3 3 PHE PHE AM . n OA 1 5 GLY 5 4 4 GLY GLY AM . n OA 1 6 PHE 6 5 5 PHE PHE AM . n OA 1 7 LYS 7 6 6 LYS LYS AM . n OA 1 8 PHE 8 7 7 PHE PHE AM . n OA 1 9 GLU 9 8 8 GLU GMA AM . n OA 1 10 NH2 10 9 8 NH2 GMA AM . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9PDT _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9PDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9PDT _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9PDT _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 4838 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.628 ? 6254 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 19.857 ? 649 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.046 ? 413 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.002 ? 826 ? f_plane_restr ? ? ? # _struct.entry_id 9PDT _struct.title 'YG18 peptide - C4 thin tube' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9PDT _struct_keywords.text 'Nanomateiral, short-peptides, cross-beta, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? P N N 1 ? Q N N 1 ? R N N 1 ? S N N 1 ? T N N 1 ? U N N 1 ? V N N 1 ? W N N 1 ? X N N 1 ? Y N N 1 ? Z N N 1 ? AA N N 1 ? BA N N 1 ? CA N N 1 ? DA N N 1 ? EA N N 1 ? FA N N 1 ? GA N N 1 ? HA N N 1 ? IA N N 1 ? JA N N 1 ? KA N N 1 ? LA N N 1 ? MA N N 1 ? NA N N 1 ? OA N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9PDT _struct_ref.pdbx_db_accession 9PDT _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9PDT T 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 2 1 9PDT M 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 3 1 9PDT V 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 4 1 9PDT X 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 5 1 9PDT Y 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 6 1 9PDT N 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 7 1 9PDT Z 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 8 1 9PDT a 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 9 1 9PDT b 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 10 1 9PDT d 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 11 1 9PDT e 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 12 1 9PDT Q 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 13 1 9PDT i 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 14 1 9PDT R 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 15 1 9PDT l 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 16 1 9PDT m 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 17 1 9PDT n 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 18 1 9PDT S 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 19 1 9PDT o 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 20 1 9PDT p 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 21 1 9PDT q 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 22 1 9PDT w 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 23 1 9PDT z 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 24 1 9PDT 1 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 25 1 9PDT 2 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 26 1 9PDT 3 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 27 1 9PDT 4 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 28 1 9PDT 5 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 29 1 9PDT 6 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 30 1 9PDT 7 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 31 1 9PDT 9 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 32 1 9PDT AB 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 33 1 9PDT AC 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 34 1 9PDT AD 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 35 1 9PDT AE 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 36 1 9PDT AF 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 37 1 9PDT AG 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 38 1 9PDT AH 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 39 1 9PDT AI 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 40 1 9PDT AL 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 41 1 9PDT AM 1 ? 8 ? 9PDT 0 ? 7 ? 0 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 41-meric _pdbx_struct_assembly.oligomeric_count 41 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A PHE 2 N ? ? T ACE 0 T PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale2 covale both ? A GLU 9 C ? ? ? 1_555 A NH2 10 N ? ? T GLU 8 T NH2 9 1_555 ? ? ? ? ? ? ? 1.380 sing ? covale3 covale both ? B ACE 1 C ? ? ? 1_555 B PHE 2 N ? ? M ACE 0 M PHE 1 1_555 ? ? ? ? ? ? ? 1.452 sing ? covale4 covale both ? B GLU 9 C ? ? ? 1_555 B NH2 10 N ? ? M GLU 8 M NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale5 covale both ? C ACE 1 C ? ? ? 1_555 C PHE 2 N ? ? V ACE 0 V PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale6 covale both ? C GLU 9 C ? ? ? 1_555 C NH2 10 N ? ? V GLU 8 V NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale7 covale both ? D ACE 1 C ? ? ? 1_555 D PHE 2 N ? ? X ACE 0 X PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale8 covale both ? D GLU 9 C ? ? ? 1_555 D NH2 10 N ? ? X GLU 8 X NH2 9 1_555 ? ? ? ? ? ? ? 1.375 sing ? covale9 covale both ? E ACE 1 C ? ? ? 1_555 E PHE 2 N ? ? Y ACE 0 Y PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale10 covale both ? E GLU 9 C ? ? ? 1_555 E NH2 10 N ? ? Y GLU 8 Y NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale11 covale both ? F ACE 1 C ? ? ? 1_555 F PHE 2 N ? ? N ACE 0 N PHE 1 1_555 ? ? ? ? ? ? ? 1.451 sing ? covale12 covale both ? F GLU 9 C ? ? ? 1_555 F NH2 10 N ? ? N GLU 8 N NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale13 covale both ? G ACE 1 C ? ? ? 1_555 G PHE 2 N ? ? Z ACE 0 Z PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale14 covale both ? G GLU 9 C ? ? ? 1_555 G NH2 10 N ? ? Z GLU 8 Z NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale15 covale both ? H ACE 1 C ? ? ? 1_555 H PHE 2 N ? ? a ACE 0 a PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale16 covale both ? H GLU 9 C ? ? ? 1_555 H NH2 10 N ? ? a GLU 8 a NH2 9 1_555 ? ? ? ? ? ? ? 1.375 sing ? covale17 covale both ? I ACE 1 C ? ? ? 1_555 I PHE 2 N ? ? b ACE 0 b PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale18 covale both ? I GLU 9 C ? ? ? 1_555 I NH2 10 N ? ? b GLU 8 b NH2 9 1_555 ? ? ? ? ? ? ? 1.377 sing ? covale19 covale both ? J ACE 1 C ? ? ? 1_555 J PHE 2 N ? ? d ACE 0 d PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale20 covale both ? J GLU 9 C ? ? ? 1_555 J NH2 10 N ? ? d GLU 8 d NH2 9 1_555 ? ? ? ? ? ? ? 1.376 sing ? covale21 covale both ? K ACE 1 C ? ? ? 1_555 K PHE 2 N ? ? e ACE 0 e PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale22 covale both ? K GLU 9 C ? ? ? 1_555 K NH2 10 N ? ? e GLU 8 e NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale23 covale both ? L ACE 1 C ? ? ? 1_555 L PHE 2 N ? ? Q ACE 0 Q PHE 1 1_555 ? ? ? ? ? ? ? 1.452 sing ? covale24 covale both ? L GLU 9 C ? ? ? 1_555 L NH2 10 N ? ? Q GLU 8 Q NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale25 covale both ? M ACE 1 C ? ? ? 1_555 M PHE 2 N ? ? i ACE 0 i PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale26 covale both ? M GLU 9 C ? ? ? 1_555 M NH2 10 N ? ? i GLU 8 i NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale27 covale both ? N ACE 1 C ? ? ? 1_555 N PHE 2 N ? ? R ACE 0 R PHE 1 1_555 ? ? ? ? ? ? ? 1.452 sing ? covale28 covale both ? N GLU 9 C ? ? ? 1_555 N NH2 10 N ? ? R GLU 8 R NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale29 covale both ? O ACE 1 C ? ? ? 1_555 O PHE 2 N ? ? l ACE 0 l PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale30 covale both ? O GLU 9 C ? ? ? 1_555 O NH2 10 N ? ? l GLU 8 l NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale31 covale both ? P ACE 1 C ? ? ? 1_555 P PHE 2 N ? ? m ACE 0 m PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale32 covale both ? P GLU 9 C ? ? ? 1_555 P NH2 10 N ? ? m GLU 8 m NH2 9 1_555 ? ? ? ? ? ? ? 1.375 sing ? covale33 covale both ? Q ACE 1 C ? ? ? 1_555 Q PHE 2 N ? ? n ACE 0 n PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale34 covale both ? Q GLU 9 C ? ? ? 1_555 Q NH2 10 N ? ? n GLU 8 n NH2 9 1_555 ? ? ? ? ? ? ? 1.377 sing ? covale35 covale both ? R ACE 1 C ? ? ? 1_555 R PHE 2 N ? ? S ACE 0 S PHE 1 1_555 ? ? ? ? ? ? ? 1.452 sing ? covale36 covale both ? R GLU 9 C ? ? ? 1_555 R NH2 10 N ? ? S GLU 8 S NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale37 covale both ? S ACE 1 C ? ? ? 1_555 S PHE 2 N ? ? o ACE 0 o PHE 1 1_555 ? ? ? ? ? ? ? 1.452 sing ? covale38 covale both ? S GLU 9 C ? ? ? 1_555 S NH2 10 N ? ? o GLU 8 o NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale39 covale both ? T ACE 1 C ? ? ? 1_555 T PHE 2 N ? ? p ACE 0 p PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale40 covale both ? T GLU 9 C ? ? ? 1_555 T NH2 10 N ? ? p GLU 8 p NH2 9 1_555 ? ? ? ? ? ? ? 1.375 sing ? covale41 covale both ? U ACE 1 C ? ? ? 1_555 U PHE 2 N ? ? q ACE 0 q PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale42 covale both ? U GLU 9 C ? ? ? 1_555 U NH2 10 N ? ? q GLU 8 q NH2 9 1_555 ? ? ? ? ? ? ? 1.377 sing ? covale43 covale both ? V ACE 1 C ? ? ? 1_555 V PHE 2 N ? ? w ACE 0 w PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale44 covale both ? V GLU 9 C ? ? ? 1_555 V NH2 10 N ? ? w GLU 8 w NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale45 covale both ? W ACE 1 C ? ? ? 1_555 W PHE 2 N ? ? z ACE 0 z PHE 1 1_555 ? ? ? ? ? ? ? 1.451 sing ? covale46 covale both ? W GLU 9 C ? ? ? 1_555 W NH2 10 N ? ? z GLU 8 z NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale47 covale both ? X ACE 1 C ? ? ? 1_555 X PHE 2 N ? ? 1 ACE 0 1 PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale48 covale both ? X GLU 9 C ? ? ? 1_555 X NH2 10 N ? ? 1 GLU 8 1 NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale49 covale both ? Y ACE 1 C ? ? ? 1_555 Y PHE 2 N ? ? 2 ACE 0 2 PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale50 covale both ? Y GLU 9 C ? ? ? 1_555 Y NH2 10 N ? ? 2 GLU 8 2 NH2 9 1_555 ? ? ? ? ? ? ? 1.375 sing ? covale51 covale both ? Z ACE 1 C ? ? ? 1_555 Z PHE 2 N ? ? 3 ACE 0 3 PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale52 covale both ? Z GLU 9 C ? ? ? 1_555 Z NH2 10 N ? ? 3 GLU 8 3 NH2 9 1_555 ? ? ? ? ? ? ? 1.377 sing ? covale53 covale both ? AA ACE 1 C ? ? ? 1_555 AA PHE 2 N ? ? 4 ACE 0 4 PHE 1 1_555 ? ? ? ? ? ? ? 1.452 sing ? covale54 covale both ? AA GLU 9 C ? ? ? 1_555 AA NH2 10 N ? ? 4 GLU 8 4 NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale55 covale both ? BA ACE 1 C ? ? ? 1_555 BA PHE 2 N ? ? 5 ACE 0 5 PHE 1 1_555 ? ? ? ? ? ? ? 1.452 sing ? covale56 covale both ? BA GLU 9 C ? ? ? 1_555 BA NH2 10 N ? ? 5 GLU 8 5 NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale57 covale both ? CA ACE 1 C ? ? ? 1_555 CA PHE 2 N ? ? 6 ACE 0 6 PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale58 covale both ? CA GLU 9 C ? ? ? 1_555 CA NH2 10 N ? ? 6 GLU 8 6 NH2 9 1_555 ? ? ? ? ? ? ? 1.375 sing ? covale59 covale both ? DA ACE 1 C ? ? ? 1_555 DA PHE 2 N ? ? 7 ACE 0 7 PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale60 covale both ? DA GLU 9 C ? ? ? 1_555 DA NH2 10 N ? ? 7 GLU 8 7 NH2 9 1_555 ? ? ? ? ? ? ? 1.377 sing ? covale61 covale both ? EA ACE 1 C ? ? ? 1_555 EA PHE 2 N ? ? 9 ACE 0 9 PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale62 covale both ? EA GLU 9 C ? ? ? 1_555 EA NH2 10 N ? ? 9 GLU 8 9 NH2 9 1_555 ? ? ? ? ? ? ? 1.380 sing ? covale63 covale both ? FA ACE 1 C ? ? ? 1_555 FA PHE 2 N ? ? AB ACE 0 AB PHE 1 1_555 ? ? ? ? ? ? ? 1.452 sing ? covale64 covale both ? FA GLU 9 C ? ? ? 1_555 FA NH2 10 N ? ? AB GLU 8 AB NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale65 covale both ? GA ACE 1 C ? ? ? 1_555 GA PHE 2 N ? ? AC ACE 0 AC PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale66 covale both ? GA GLU 9 C ? ? ? 1_555 GA NH2 10 N ? ? AC GLU 8 AC NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale67 covale both ? HA ACE 1 C ? ? ? 1_555 HA PHE 2 N ? ? AD ACE 0 AD PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale68 covale both ? HA GLU 9 C ? ? ? 1_555 HA NH2 10 N ? ? AD GLU 8 AD NH2 9 1_555 ? ? ? ? ? ? ? 1.376 sing ? covale69 covale both ? IA ACE 1 C ? ? ? 1_555 IA PHE 2 N ? ? AE ACE 0 AE PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale70 covale both ? IA GLU 9 C ? ? ? 1_555 IA NH2 10 N ? ? AE GLU 8 AE NH2 9 1_555 ? ? ? ? ? ? ? 1.377 sing ? covale71 covale both ? JA ACE 1 C ? ? ? 1_555 JA PHE 2 N ? ? AF ACE 0 AF PHE 1 1_555 ? ? ? ? ? ? ? 1.451 sing ? covale72 covale both ? JA GLU 9 C ? ? ? 1_555 JA NH2 10 N ? ? AF GLU 8 AF NH2 9 1_555 ? ? ? ? ? ? ? 1.378 sing ? covale73 covale both ? KA ACE 1 C ? ? ? 1_555 KA PHE 2 N ? ? AG ACE 0 AG PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale74 covale both ? KA GLU 9 C ? ? ? 1_555 KA NH2 10 N ? ? AG GLU 8 AG NH2 9 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale75 covale both ? LA ACE 1 C ? ? ? 1_555 LA PHE 2 N ? ? AH ACE 0 AH PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale76 covale both ? LA GLU 9 C ? ? ? 1_555 LA NH2 10 N ? ? AH GLU 8 AH NH2 9 1_555 ? ? ? ? ? ? ? 1.375 sing ? covale77 covale both ? MA ACE 1 C ? ? ? 1_555 MA PHE 2 N ? ? AI ACE 0 AI PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale78 covale both ? MA GLU 9 C ? ? ? 1_555 MA NH2 10 N ? ? AI GLU 8 AI NH2 9 1_555 ? ? ? ? ? ? ? 1.377 sing ? covale79 covale both ? NA ACE 1 C ? ? ? 1_555 NA PHE 2 N ? ? AL ACE 0 AL PHE 1 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale80 covale both ? NA GLU 9 C ? ? ? 1_555 NA NH2 10 N ? ? AL GLU 8 AL NH2 9 1_555 ? ? ? ? ? ? ? 1.375 sing ? covale81 covale both ? OA ACE 1 C ? ? ? 1_555 OA PHE 2 N ? ? AM ACE 0 AM PHE 1 1_555 ? ? ? ? ? ? ? 1.453 sing ? covale82 covale both ? OA GLU 9 C ? ? ? 1_555 OA NH2 10 N ? ? AM GLU 8 AM NH2 9 1_555 ? ? ? ? ? ? ? 1.377 sing ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 ACE A 1 ? PHE A 2 ? ACE T 0 ? 1_555 PHE T 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 2 ACE AA 1 ? PHE AA 2 ? ACE 4 0 ? 1_555 PHE 4 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 3 ACE B 1 ? PHE B 2 ? ACE M 0 ? 1_555 PHE M 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 4 ACE BA 1 ? PHE BA 2 ? ACE 5 0 ? 1_555 PHE 5 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 5 ACE C 1 ? PHE C 2 ? ACE V 0 ? 1_555 PHE V 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 6 ACE CA 1 ? PHE CA 2 ? ACE 6 0 ? 1_555 PHE 6 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 7 ACE D 1 ? PHE D 2 ? ACE X 0 ? 1_555 PHE X 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 8 ACE DA 1 ? PHE DA 2 ? ACE 7 0 ? 1_555 PHE 7 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 9 ACE E 1 ? PHE E 2 ? ACE Y 0 ? 1_555 PHE Y 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 10 ACE EA 1 ? PHE EA 2 ? ACE 9 0 ? 1_555 PHE 9 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 11 ACE F 1 ? PHE F 2 ? ACE N 0 ? 1_555 PHE N 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 12 ACE FA 1 ? PHE FA 2 ? ACE AB 0 ? 1_555 PHE AB 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 13 ACE G 1 ? PHE G 2 ? ACE Z 0 ? 1_555 PHE Z 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 14 ACE GA 1 ? PHE GA 2 ? ACE AC 0 ? 1_555 PHE AC 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 15 ACE H 1 ? PHE H 2 ? ACE a 0 ? 1_555 PHE a 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 16 ACE HA 1 ? PHE HA 2 ? ACE AD 0 ? 1_555 PHE AD 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 17 ACE I 1 ? PHE I 2 ? ACE b 0 ? 1_555 PHE b 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 18 ACE IA 1 ? PHE IA 2 ? ACE AE 0 ? 1_555 PHE AE 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 19 ACE J 1 ? PHE J 2 ? ACE d 0 ? 1_555 PHE d 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 20 ACE JA 1 ? PHE JA 2 ? ACE AF 0 ? 1_555 PHE AF 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 21 ACE K 1 ? PHE K 2 ? ACE e 0 ? 1_555 PHE e 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 22 ACE KA 1 ? PHE KA 2 ? ACE AG 0 ? 1_555 PHE AG 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 23 ACE L 1 ? PHE L 2 ? ACE Q 0 ? 1_555 PHE Q 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 24 ACE LA 1 ? PHE LA 2 ? ACE AH 0 ? 1_555 PHE AH 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 25 ACE M 1 ? PHE M 2 ? ACE i 0 ? 1_555 PHE i 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 26 ACE MA 1 ? PHE MA 2 ? ACE AI 0 ? 1_555 PHE AI 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 27 ACE N 1 ? PHE N 2 ? ACE R 0 ? 1_555 PHE R 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 28 ACE NA 1 ? PHE NA 2 ? ACE AL 0 ? 1_555 PHE AL 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 29 ACE O 1 ? PHE O 2 ? ACE l 0 ? 1_555 PHE l 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 30 ACE OA 1 ? PHE OA 2 ? ACE AM 0 ? 1_555 PHE AM 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 31 ACE P 1 ? PHE P 2 ? ACE m 0 ? 1_555 PHE m 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 32 ACE Q 1 ? PHE Q 2 ? ACE n 0 ? 1_555 PHE n 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 33 ACE R 1 ? PHE R 2 ? ACE S 0 ? 1_555 PHE S 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 34 ACE S 1 ? PHE S 2 ? ACE o 0 ? 1_555 PHE o 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 35 ACE T 1 ? PHE T 2 ? ACE p 0 ? 1_555 PHE p 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 36 ACE U 1 ? PHE U 2 ? ACE q 0 ? 1_555 PHE q 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 37 ACE V 1 ? PHE V 2 ? ACE w 0 ? 1_555 PHE w 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 38 ACE W 1 ? PHE W 2 ? ACE z 0 ? 1_555 PHE z 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 39 ACE X 1 ? PHE X 2 ? ACE 1 0 ? 1_555 PHE 1 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 40 ACE Y 1 ? PHE Y 2 ? ACE 2 0 ? 1_555 PHE 2 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 41 ACE Z 1 ? PHE Z 2 ? ACE 3 0 ? 1_555 PHE 3 1 ? 1_555 . . PHE 15 ACE None 'Terminal acetylation' 42 NH2 A 10 ? GLU A 9 ? NH2 T 9 ? 1_555 GLU T 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 43 NH2 AA 10 ? GLU AA 9 ? NH2 4 9 ? 1_555 GLU 4 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 44 NH2 B 10 ? GLU B 9 ? NH2 M 9 ? 1_555 GLU M 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 45 NH2 BA 10 ? GLU BA 9 ? NH2 5 9 ? 1_555 GLU 5 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 46 NH2 C 10 ? GLU C 9 ? NH2 V 9 ? 1_555 GLU V 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 47 NH2 CA 10 ? GLU CA 9 ? NH2 6 9 ? 1_555 GLU 6 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 48 NH2 D 10 ? GLU D 9 ? NH2 X 9 ? 1_555 GLU X 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 49 NH2 DA 10 ? GLU DA 9 ? NH2 7 9 ? 1_555 GLU 7 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 50 NH2 E 10 ? GLU E 9 ? NH2 Y 9 ? 1_555 GLU Y 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 51 NH2 EA 10 ? GLU EA 9 ? NH2 9 9 ? 1_555 GLU 9 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 52 NH2 F 10 ? GLU F 9 ? NH2 N 9 ? 1_555 GLU N 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 53 NH2 FA 10 ? GLU FA 9 ? NH2 AB 9 ? 1_555 GLU AB 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 54 NH2 G 10 ? GLU G 9 ? NH2 Z 9 ? 1_555 GLU Z 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 55 NH2 GA 10 ? GLU GA 9 ? NH2 AC 9 ? 1_555 GLU AC 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 56 NH2 H 10 ? GLU H 9 ? NH2 a 9 ? 1_555 GLU a 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 57 NH2 HA 10 ? GLU HA 9 ? NH2 AD 9 ? 1_555 GLU AD 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 58 NH2 I 10 ? GLU I 9 ? NH2 b 9 ? 1_555 GLU b 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 59 NH2 IA 10 ? GLU IA 9 ? NH2 AE 9 ? 1_555 GLU AE 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 60 NH2 J 10 ? GLU J 9 ? NH2 d 9 ? 1_555 GLU d 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 61 NH2 JA 10 ? GLU JA 9 ? NH2 AF 9 ? 1_555 GLU AF 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 62 NH2 K 10 ? GLU K 9 ? NH2 e 9 ? 1_555 GLU e 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 63 NH2 KA 10 ? GLU KA 9 ? NH2 AG 9 ? 1_555 GLU AG 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 64 NH2 L 10 ? GLU L 9 ? NH2 Q 9 ? 1_555 GLU Q 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 65 NH2 LA 10 ? GLU LA 9 ? NH2 AH 9 ? 1_555 GLU AH 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 66 NH2 M 10 ? GLU M 9 ? NH2 i 9 ? 1_555 GLU i 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 67 NH2 MA 10 ? GLU MA 9 ? NH2 AI 9 ? 1_555 GLU AI 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 68 NH2 N 10 ? GLU N 9 ? NH2 R 9 ? 1_555 GLU R 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 69 NH2 NA 10 ? GLU NA 9 ? NH2 AL 9 ? 1_555 GLU AL 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 70 NH2 O 10 ? GLU O 9 ? NH2 l 9 ? 1_555 GLU l 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 71 NH2 OA 10 ? GLU OA 9 ? NH2 AM 9 ? 1_555 GLU AM 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 72 NH2 P 10 ? GLU P 9 ? NH2 m 9 ? 1_555 GLU m 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 73 NH2 Q 10 ? GLU Q 9 ? NH2 n 9 ? 1_555 GLU n 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 74 NH2 R 10 ? GLU R 9 ? NH2 S 9 ? 1_555 GLU S 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 75 NH2 S 10 ? GLU S 9 ? NH2 o 9 ? 1_555 GLU o 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 76 NH2 T 10 ? GLU T 9 ? NH2 p 9 ? 1_555 GLU p 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 77 NH2 U 10 ? GLU U 9 ? NH2 q 9 ? 1_555 GLU q 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 78 NH2 V 10 ? GLU V 9 ? NH2 w 9 ? 1_555 GLU w 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 79 NH2 W 10 ? GLU W 9 ? NH2 z 9 ? 1_555 GLU z 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 80 NH2 X 10 ? GLU X 9 ? NH2 1 9 ? 1_555 GLU 1 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 81 NH2 Y 10 ? GLU Y 9 ? NH2 2 9 ? 1_555 GLU 2 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' 82 NH2 Z 10 ? GLU Z 9 ? NH2 3 9 ? 1_555 GLU 3 8 ? 1_555 . . GLU 10 NH2 None 'Terminal amidation' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel AA4 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 3 ? GLY A 5 ? LYS T 2 GLY T 4 AA1 2 LYS D 3 ? GLY D 5 ? LYS X 2 GLY X 4 AA1 3 LYS C 3 ? GLY C 5 ? LYS V 2 GLY V 4 AA1 4 LYS H 3 ? GLY H 5 ? LYS a 2 GLY a 4 AA1 5 LYS G 3 ? GLY G 5 ? LYS Z 2 GLY Z 4 AA1 6 LYS J 3 ? GLY J 5 ? LYS d 2 GLY d 4 AA2 1 LYS M 3 ? GLY M 5 ? LYS i 2 GLY i 4 AA2 2 LYS P 3 ? GLY P 5 ? LYS m 2 GLY m 4 AA2 3 LYS O 3 ? GLY O 5 ? LYS l 2 GLY l 4 AA2 4 LYS T 3 ? GLY T 5 ? LYS p 2 GLY p 4 AA2 5 LYS S 3 ? GLY S 5 ? LYS o 2 GLY o 4 AA3 1 LYS V 3 ? GLY V 5 ? LYS w 2 GLY w 4 AA3 2 LYS Y 3 ? GLY Y 5 ? LYS 2 2 GLY 2 4 AA3 3 LYS X 3 ? GLY X 5 ? LYS 1 2 GLY 1 4 AA3 4 LYS CA 3 ? GLY CA 5 ? LYS 6 2 GLY 6 4 AA3 5 LYS BA 3 ? GLY BA 5 ? LYS 5 2 GLY 5 4 AA4 1 LYS EA 3 ? GLY EA 5 ? LYS 9 2 GLY 9 4 AA4 2 LYS HA 3 ? GLY HA 5 ? LYS AD 2 GLY AD 4 AA4 3 LYS GA 3 ? GLY GA 5 ? LYS AC 2 GLY AC 4 AA4 4 LYS LA 3 ? GLY LA 5 ? LYS AH 2 GLY AH 4 AA4 5 LYS KA 3 ? GLY KA 5 ? LYS AG 2 GLY AG 4 AA4 6 LYS NA 3 ? GLY NA 5 ? LYS AL 2 GLY AL 4 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLY A 5 ? N GLY T 4 O PHE D 4 ? O PHE X 3 AA1 2 3 O GLY D 5 ? O GLY X 4 N PHE C 4 ? N PHE V 3 AA1 3 4 N GLY C 5 ? N GLY V 4 O PHE H 4 ? O PHE a 3 AA1 4 5 O GLY H 5 ? O GLY a 4 N PHE G 4 ? N PHE Z 3 AA1 5 6 N GLY G 5 ? N GLY Z 4 O PHE J 4 ? O PHE d 3 AA2 1 2 N GLY M 5 ? N GLY i 4 O PHE P 4 ? O PHE m 3 AA2 2 3 O GLY P 5 ? O GLY m 4 N PHE O 4 ? N PHE l 3 AA2 3 4 N GLY O 5 ? N GLY l 4 O PHE T 4 ? O PHE p 3 AA2 4 5 O GLY T 5 ? O GLY p 4 N PHE S 4 ? N PHE o 3 AA3 1 2 N GLY V 5 ? N GLY w 4 O PHE Y 4 ? O PHE 2 3 AA3 2 3 O GLY Y 5 ? O GLY 2 4 N PHE X 4 ? N PHE 1 3 AA3 3 4 N GLY X 5 ? N GLY 1 4 O PHE CA 4 ? O PHE 6 3 AA3 4 5 O GLY CA 5 ? O GLY 6 4 N PHE BA 4 ? N PHE 5 3 AA4 1 2 N GLY EA 5 ? N GLY 9 4 O PHE HA 4 ? O PHE AD 3 AA4 2 3 O GLY HA 5 ? O GLY AD 4 N PHE GA 4 ? N PHE AC 3 AA4 3 4 N GLY GA 5 ? N GLY AC 4 O PHE LA 4 ? O PHE AH 3 AA4 4 5 O GLY LA 5 ? O GLY AH 4 N PHE KA 4 ? N PHE AG 3 AA4 5 6 N GLY KA 5 ? N GLY AG 4 O PHE NA 4 ? O PHE AL 3 # _pdbx_entry_details.entry_id 9PDT _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE V 7 ? ? -119.05 73.19 2 1 LYS Y 2 ? ? -169.65 97.34 3 1 PHE Y 5 ? ? 66.71 149.11 4 1 LYS Y 6 ? ? -130.77 -33.34 5 1 PHE Y 7 ? ? 50.80 -118.71 6 1 LYS b 2 ? ? -170.39 107.22 7 1 PHE b 5 ? ? 66.26 151.37 8 1 LYS b 6 ? ? -131.80 -33.41 9 1 PHE b 7 ? ? 48.31 -116.16 10 1 LYS e 2 ? ? -166.94 103.98 11 1 PHE e 5 ? ? 65.64 153.11 12 1 LYS e 6 ? ? -131.17 -33.14 13 1 PHE e 7 ? ? 48.98 -117.78 14 1 PHE i 7 ? ? -119.07 73.20 15 1 LYS n 2 ? ? -169.51 107.64 16 1 PHE n 5 ? ? 66.29 151.38 17 1 LYS n 6 ? ? -131.83 -33.38 18 1 PHE n 7 ? ? 48.19 -116.04 19 1 LYS q 2 ? ? -170.20 103.30 20 1 PHE q 5 ? ? 65.57 153.00 21 1 LYS q 6 ? ? -131.62 -33.33 22 1 PHE q 7 ? ? 48.41 -117.39 23 1 PHE w 7 ? ? -119.05 73.19 24 1 LYS 3 2 ? ? -170.39 107.22 25 1 PHE 3 5 ? ? 66.26 151.37 26 1 LYS 3 6 ? ? -131.80 -33.41 27 1 PHE 3 7 ? ? 48.31 -116.16 28 1 LYS 7 2 ? ? -170.29 103.06 29 1 PHE 7 5 ? ? 65.71 152.98 30 1 LYS 7 6 ? ? -131.46 -33.30 31 1 PHE 7 7 ? ? 48.62 -117.36 32 1 PHE AC 7 ? ? -119.17 72.65 33 1 LYS AE 2 ? ? -169.64 97.36 34 1 PHE AE 5 ? ? 66.49 149.31 35 1 LYS AE 6 ? ? -132.49 -32.66 36 1 PHE AE 7 ? ? 50.96 -119.11 37 1 LYS AI 2 ? ? -170.39 107.22 38 1 PHE AI 5 ? ? 66.26 151.37 39 1 LYS AI 6 ? ? -131.80 -33.41 40 1 PHE AI 7 ? ? 48.33 -116.16 41 1 LYS AM 2 ? ? -170.29 103.06 42 1 PHE AM 5 ? ? 65.66 152.94 43 1 LYS AM 6 ? ? -131.43 -33.26 44 1 PHE AM 7 ? ? 48.62 -117.36 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9PDT _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9PDT _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.8 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 202034 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'helical oligomer of YG18 peptides' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9PDT _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1200 _em_imaging.nominal_defocus_max 2400 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9PDT _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9PDT _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 GLU N N N N 8 GLU CA C N S 9 GLU C C N N 10 GLU O O N N 11 GLU CB C N N 12 GLU CG C N N 13 GLU CD C N N 14 GLU OE1 O N N 15 GLU OE2 O N N 16 GLU OXT O N N 17 GLU H H N N 18 GLU H2 H N N 19 GLU HA H N N 20 GLU HB2 H N N 21 GLU HB3 H N N 22 GLU HG2 H N N 23 GLU HG3 H N N 24 GLU HE2 H N N 25 GLU HXT H N N 26 GLY N N N N 27 GLY CA C N N 28 GLY C C N N 29 GLY O O N N 30 GLY OXT O N N 31 GLY H H N N 32 GLY H2 H N N 33 GLY HA2 H N N 34 GLY HA3 H N N 35 GLY HXT H N N 36 LYS N N N N 37 LYS CA C N S 38 LYS C C N N 39 LYS O O N N 40 LYS CB C N N 41 LYS CG C N N 42 LYS CD C N N 43 LYS CE C N N 44 LYS NZ N N N 45 LYS OXT O N N 46 LYS H H N N 47 LYS H2 H N N 48 LYS HA H N N 49 LYS HB2 H N N 50 LYS HB3 H N N 51 LYS HG2 H N N 52 LYS HG3 H N N 53 LYS HD2 H N N 54 LYS HD3 H N N 55 LYS HE2 H N N 56 LYS HE3 H N N 57 LYS HZ1 H N N 58 LYS HZ2 H N N 59 LYS HZ3 H N N 60 LYS HXT H N N 61 NH2 N N N N 62 NH2 HN1 H N N 63 NH2 HN2 H N N 64 PHE N N N N 65 PHE CA C N S 66 PHE C C N N 67 PHE O O N N 68 PHE CB C N N 69 PHE CG C Y N 70 PHE CD1 C Y N 71 PHE CD2 C Y N 72 PHE CE1 C Y N 73 PHE CE2 C Y N 74 PHE CZ C Y N 75 PHE OXT O N N 76 PHE H H N N 77 PHE H2 H N N 78 PHE HA H N N 79 PHE HB2 H N N 80 PHE HB3 H N N 81 PHE HD1 H N N 82 PHE HD2 H N N 83 PHE HE1 H N N 84 PHE HE2 H N N 85 PHE HZ H N N 86 PHE HXT H N N 87 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 GLU N CA sing N N 7 GLU N H sing N N 8 GLU N H2 sing N N 9 GLU CA C sing N N 10 GLU CA CB sing N N 11 GLU CA HA sing N N 12 GLU C O doub N N 13 GLU C OXT sing N N 14 GLU CB CG sing N N 15 GLU CB HB2 sing N N 16 GLU CB HB3 sing N N 17 GLU CG CD sing N N 18 GLU CG HG2 sing N N 19 GLU CG HG3 sing N N 20 GLU CD OE1 doub N N 21 GLU CD OE2 sing N N 22 GLU OE2 HE2 sing N N 23 GLU OXT HXT sing N N 24 GLY N CA sing N N 25 GLY N H sing N N 26 GLY N H2 sing N N 27 GLY CA C sing N N 28 GLY CA HA2 sing N N 29 GLY CA HA3 sing N N 30 GLY C O doub N N 31 GLY C OXT sing N N 32 GLY OXT HXT sing N N 33 LYS N CA sing N N 34 LYS N H sing N N 35 LYS N H2 sing N N 36 LYS CA C sing N N 37 LYS CA CB sing N N 38 LYS CA HA sing N N 39 LYS C O doub N N 40 LYS C OXT sing N N 41 LYS CB CG sing N N 42 LYS CB HB2 sing N N 43 LYS CB HB3 sing N N 44 LYS CG CD sing N N 45 LYS CG HG2 sing N N 46 LYS CG HG3 sing N N 47 LYS CD CE sing N N 48 LYS CD HD2 sing N N 49 LYS CD HD3 sing N N 50 LYS CE NZ sing N N 51 LYS CE HE2 sing N N 52 LYS CE HE3 sing N N 53 LYS NZ HZ1 sing N N 54 LYS NZ HZ2 sing N N 55 LYS NZ HZ3 sing N N 56 LYS OXT HXT sing N N 57 NH2 N HN1 sing N N 58 NH2 N HN2 sing N N 59 PHE N CA sing N N 60 PHE N H sing N N 61 PHE N H2 sing N N 62 PHE CA C sing N N 63 PHE CA CB sing N N 64 PHE CA HA sing N N 65 PHE C O doub N N 66 PHE C OXT sing N N 67 PHE CB CG sing N N 68 PHE CB HB2 sing N N 69 PHE CB HB3 sing N N 70 PHE CG CD1 doub Y N 71 PHE CG CD2 sing Y N 72 PHE CD1 CE1 sing Y N 73 PHE CD1 HD1 sing N N 74 PHE CD2 CE2 doub Y N 75 PHE CD2 HD2 sing N N 76 PHE CE1 CZ doub Y N 77 PHE CE1 HE1 sing N N 78 PHE CE2 CZ sing Y N 79 PHE CE2 HE2 sing N N 80 PHE CZ HZ sing N N 81 PHE OXT HXT sing N N 82 # _em_admin.current_status REL _em_admin.deposition_date 2025-07-01 _em_admin.deposition_site RCSB _em_admin.entry_id 9PDT _em_admin.last_update 2026-07-08 _em_admin.map_release_date 2026-07-08 _em_admin.title 'YG18 peptide - C4 thin tube' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C4 _em_helical_entity.angular_rotation_per_subunit -15.77 _em_helical_entity.axial_rise_per_subunit 7.87 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.20.1_4487: ? 'IMAGE ACQUISITION' ? 3 1 1 1 ? ? ? MASKING ? 4 1 1 1 ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 6 1 1 1 ? ? ? 'DIFFRACTION INDEXING' ? 7 1 1 1 ? ? ? 'MODEL FITTING' ? 8 1 1 1 ? ? ? OTHER ? 9 1 1 1 ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' 'NSF 2304854' 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM122510 2 # _atom_sites.entry_id 9PDT _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ #