HEADER TRANSFERASE 03-JUL-25 9PFA TITLE CRYSTAL STRUCTURE OF THE GLYCOSYLTRANSFERASE SVFUCT FROM SAPONARIA TITLE 2 VACCARIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GYPSOPHILA VACCARIA; SOURCE 3 ORGANISM_TAXID: 39387; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.PEREIRA,G.A.HUDSON,J.D.KEASLING,P.D.ADAMS REVDAT 1 08-APR-26 9PFA 0 JRNL AUTH G.A.HUDSON,J.H.PEREIRA,P.H.WINEGAR,D.M.FITZGERALD, JRNL AUTH 2 A.DEGIOVANNI,X.CHEN,X.ZHAO,M.C.T.ASTOLFI,J.REED, JRNL AUTH 3 A.EL-DEMERDASH,M.REJZEK,S.KIKUCHI,A.OSBOURN,H.V.SCHELLER, JRNL AUTH 4 P.D.ADAMS,J.D.KEASLING JRNL TITL ENZYMOLOGY AND STRUCTURAL BASIS OF GLYCOSYLTRANSFERASES JRNL TITL 2 INVOLVED IN SAPONIN C28 CARBOXYLIC ACID O JRNL TITL 3 ‐D‐FUCOSYLATION. JRNL REF JACS AU V. 5 6011 2025 JRNL REFN ESSN 2691-3704 JRNL PMID 41450652 JRNL DOI 10.1021/JACSAU.5C00907 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 91218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4800 - 4.0900 1.00 7863 163 0.1681 0.1686 REMARK 3 2 4.0900 - 3.2500 1.00 7567 156 0.1486 0.1930 REMARK 3 3 3.2500 - 2.8400 0.99 7434 152 0.1727 0.2209 REMARK 3 4 2.8400 - 2.5800 0.98 7346 155 0.1683 0.2348 REMARK 3 5 2.5800 - 2.3900 0.97 7238 149 0.1670 0.1959 REMARK 3 6 2.3900 - 2.2500 0.96 7175 144 0.1659 0.2149 REMARK 3 7 2.2500 - 2.1400 0.95 7017 146 0.1623 0.1745 REMARK 3 8 2.1400 - 2.0500 0.93 6919 140 0.1774 0.2310 REMARK 3 9 2.0500 - 1.9700 0.90 6701 137 0.1894 0.2388 REMARK 3 10 1.9700 - 1.9000 0.87 6454 136 0.2181 0.2563 REMARK 3 11 1.9000 - 1.8400 0.84 6188 127 0.2466 0.2766 REMARK 3 12 1.8400 - 1.7900 0.80 5905 119 0.2785 0.3792 REMARK 3 13 1.7900 - 1.7400 0.76 5571 116 0.3133 0.3592 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.218 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.541 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 7462 REMARK 3 ANGLE : 1.025 10148 REMARK 3 CHIRALITY : 0.065 1132 REMARK 3 PLANARITY : 0.012 1298 REMARK 3 DIHEDRAL : 15.434 2691 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9PFA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1000297708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91222 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 48.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M BIS REMARK 280 -TRIS PH 6.5 25 % (W/V) PEG 3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.28200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.27400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.36500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.27400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.28200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.36500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 GLU A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 ASP A 56 REMARK 465 GLN A 57 REMARK 465 VAL A 58 REMARK 465 ASP A 59 REMARK 465 ILE A 60 REMARK 465 ASN A 61 REMARK 465 SER A 62 REMARK 465 PHE A 271 REMARK 465 ASN A 272 REMARK 465 LEU A 273 REMARK 465 ASP A 274 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 GLU B 4 REMARK 465 ILE B 5 REMARK 465 LYS B 6 REMARK 465 GLN B 57 REMARK 465 VAL B 58 REMARK 465 ASP B 59 REMARK 465 ILE B 60 REMARK 465 ASN B 61 REMARK 465 SER B 62 REMARK 465 ALA B 63 REMARK 465 TRP B 64 REMARK 465 ALA B 65 REMARK 465 ALA B 66 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 275 CG OD1 ND2 REMARK 470 ASP A 342 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 334 O HOH A 601 2.00 REMARK 500 O HOH A 730 O HOH A 957 2.05 REMARK 500 O HOH B 854 O HOH B 928 2.08 REMARK 500 OH TYR A 150 OD1 ASP A 391 2.08 REMARK 500 O HOH A 904 O HOH A 1007 2.11 REMARK 500 O1B UDP B 501 O HOH B 601 2.12 REMARK 500 O HOH A 706 O HOH A 894 2.12 REMARK 500 O HOH A 742 O HOH A 927 2.13 REMARK 500 O HOH A 611 O HOH A 657 2.13 REMARK 500 O HOH B 789 O HOH B 934 2.16 REMARK 500 OE1 GLU A 233 O HOH A 602 2.19 REMARK 500 O HOH B 887 O HOH B 896 2.19 REMARK 500 O HOH B 962 O HOH B 1003 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 844 O HOH B 881 4556 2.11 REMARK 500 O HOH A 943 O HOH B 933 4566 2.18 REMARK 500 O HOH A 981 O HOH B 842 4456 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 150 CZ TYR A 150 CE2 -0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 17.30 43.48 REMARK 500 THR A 43 -164.90 -161.15 REMARK 500 ASP A 111 56.41 39.17 REMARK 500 GLU A 163 -64.21 107.21 REMARK 500 PRO A 164 87.34 -62.86 REMARK 500 THR A 250 31.74 -93.92 REMARK 500 ILE A 256 -88.46 -141.85 REMARK 500 HIS A 269 -80.38 -54.28 REMARK 500 ASP A 335 -8.77 89.23 REMARK 500 LEU A 390 -107.10 55.63 REMARK 500 ASN B 35 -12.23 78.35 REMARK 500 THR B 43 -159.39 -159.00 REMARK 500 ASP B 76 33.94 -98.42 REMARK 500 ASN B 112 -5.64 80.52 REMARK 500 PRO B 141 32.11 -91.85 REMARK 500 ILE B 256 -87.56 -140.18 REMARK 500 ASP B 335 -4.02 91.09 REMARK 500 LEU B 390 -117.53 44.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 83 0.11 SIDE CHAIN REMARK 500 ARG B 411 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1009 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH B1010 DISTANCE = 6.44 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 UDP A 501 O1A REMARK 620 2 UDP A 501 O2B 83.2 REMARK 620 3 HOH A 861 O 82.2 164.9 REMARK 620 4 HOH A 931 O 100.3 110.9 75.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 626 O REMARK 620 2 HOH A 659 O 78.3 REMARK 620 3 HOH A 788 O 90.1 86.6 REMARK 620 4 HOH A 801 O 87.9 99.0 173.6 REMARK 620 5 HOH A 816 O 151.6 75.0 97.6 87.0 REMARK 620 6 HOH A1015 O 112.2 167.5 86.5 88.5 95.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 20 NE2 REMARK 620 2 UDP B 501 O1A 99.5 REMARK 620 3 UDP B 501 O3B 91.8 87.0 REMARK 620 4 HOH B 658 O 78.0 85.9 166.4 REMARK 620 5 HOH B 740 O 81.3 179.0 92.4 94.8 REMARK 620 6 HOH B 865 O 165.1 92.4 97.8 94.1 86.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 619 O REMARK 620 2 HOH B 657 O 80.9 REMARK 620 3 HOH B 857 O 102.3 170.8 REMARK 620 4 HOH B 975 O 134.2 91.1 92.7 REMARK 620 N 1 2 3 DBREF 9PFA A 1 473 PDB 9PFA 9PFA 1 473 DBREF 9PFA B 1 473 PDB 9PFA 9PFA 1 473 SEQRES 1 A 473 MET ALA HIS GLU ILE LYS LYS ILE GLU ILE ILE VAL PHE SEQRES 2 A 473 PRO TYR HIS GLY GLN GLY HIS MET ASN THR MET LEU GLN SEQRES 3 A 473 PHE ALA LYS ARG LEU ALA TRP LYS ASN VAL VAL ASN VAL SEQRES 4 A 473 THR ILE ALA THR THR LEU GLY THR THR ASN LYS MET ARG SEQRES 5 A 473 SER GLN VAL ASP GLN VAL ASP ILE ASN SER ALA TRP ALA SEQRES 6 A 473 ALA SER ILE ASP LEU VAL SER VAL TYR ASP ASP THR ASP SEQRES 7 A 473 GLU SER GLN VAL ARG PHE MET ASP ARG MET ALA ARG PHE SEQRES 8 A 473 GLU ALA ALA ALA ALA SER ASN LEU ALA THR LEU LEU VAL SEQRES 9 A 473 LYS LYS LYS GLU HIS ALA ASP ASN LYS VAL LEU LEU VAL SEQRES 10 A 473 TYR ASP GLY ASN LEU PRO TRP ALA LEU ASP VAL ALA HIS SEQRES 11 A 473 GLY LYS GLY VAL ARG GLY ALA ALA PHE PHE PRO GLN SER SEQRES 12 A 473 CYS ALA THR VAL ALA THR TYR TYR CYS LEU TYR ASN GLU SEQRES 13 A 473 THR GLN GLY ARG GLU VAL GLU PRO LYS LEU PRO ASP VAL SEQRES 14 A 473 PHE PRO PRO LEU GLU LEU ILE GLN ARG ASN ILE PRO ASN SEQRES 15 A 473 VAL TYR GLY MET LYS PHE PRO GLU ALA VAL VAL PRO LYS SEQRES 16 A 473 ASN GLY LYS GLU TYR SER ASP PHE VAL LEU TYR VAL LEU SEQRES 17 A 473 ARG GLN CYS VAL ASN LEU GLU LYS SER ASP LEU VAL LEU SEQRES 18 A 473 PHE ASN GLN PHE ASP LYS LEU VAL GLU PRO GLY GLU VAL SEQRES 19 A 473 LEU GLN TRP MET SER LYS ILE PHE ASN VAL LYS THR ILE SEQRES 20 A 473 GLY PRO THR LEU PRO SER ALA TYR ILE ASP LYS ARG ILE SEQRES 21 A 473 LYS ASP ASP VAL ALA TYR GLY PHE HIS ALA PHE ASN LEU SEQRES 22 A 473 ASP ASN ASP THR CYS MET ASN TRP LEU SER THR LYS PRO SEQRES 23 A 473 ALA GLY SER VAL ILE TYR ILE ALA PHE GLY SER SER VAL SEQRES 24 A 473 HIS TYR SER VAL GLU GLN MET THR GLU ILE ALA GLU ALA SEQRES 25 A 473 LEU ARG SER GLN PRO LYS ASN PHE LEU TRP ALA VAL ARG SEQRES 26 A 473 GLU THR GLU GLN VAL LYS LEU PRO ALA ASP PHE ILE GLU SEQRES 27 A 473 GLN THR ALA ASP LYS GLY LEU VAL LEU ALA TRP CYS PRO SEQRES 28 A 473 GLN LEU ASP VAL LEU LYS HIS GLU SER ILE GLY CYS PHE SEQRES 29 A 473 VAL THR HIS CYS GLY TRP ASN SER ILE THR GLU ALA LEU SEQRES 30 A 473 SER PHE GLY VAL PRO MET LEU SER VAL PRO GLN PHE LEU SEQRES 31 A 473 ASP GLN PRO VAL ASP ALA HIS PHE VAL GLU GLN VAL TRP SEQRES 32 A 473 GLY ALA GLY VAL THR VAL LYS ARG ASN GLU ASP GLY PHE SEQRES 33 A 473 VAL THR ARG ASP GLU ILE ILE ARG CYS LEU ASP GLU LEU SEQRES 34 A 473 ASN ASP GLY GLU ARG ALA ALA GLU ILE LYS ALA ASN VAL SEQRES 35 A 473 ALA ARG TRP LYS VAL LEU ALA LYS GLU ALA LEU GLU GLU SEQRES 36 A 473 GLY GLY SER SER ASP LYS HIS ILE ASP GLU ILE ILE GLU SEQRES 37 A 473 TRP VAL SER SER PHE SEQRES 1 B 473 MET ALA HIS GLU ILE LYS LYS ILE GLU ILE ILE VAL PHE SEQRES 2 B 473 PRO TYR HIS GLY GLN GLY HIS MET ASN THR MET LEU GLN SEQRES 3 B 473 PHE ALA LYS ARG LEU ALA TRP LYS ASN VAL VAL ASN VAL SEQRES 4 B 473 THR ILE ALA THR THR LEU GLY THR THR ASN LYS MET ARG SEQRES 5 B 473 SER GLN VAL ASP GLN VAL ASP ILE ASN SER ALA TRP ALA SEQRES 6 B 473 ALA SER ILE ASP LEU VAL SER VAL TYR ASP ASP THR ASP SEQRES 7 B 473 GLU SER GLN VAL ARG PHE MET ASP ARG MET ALA ARG PHE SEQRES 8 B 473 GLU ALA ALA ALA ALA SER ASN LEU ALA THR LEU LEU VAL SEQRES 9 B 473 LYS LYS LYS GLU HIS ALA ASP ASN LYS VAL LEU LEU VAL SEQRES 10 B 473 TYR ASP GLY ASN LEU PRO TRP ALA LEU ASP VAL ALA HIS SEQRES 11 B 473 GLY LYS GLY VAL ARG GLY ALA ALA PHE PHE PRO GLN SER SEQRES 12 B 473 CYS ALA THR VAL ALA THR TYR TYR CYS LEU TYR ASN GLU SEQRES 13 B 473 THR GLN GLY ARG GLU VAL GLU PRO LYS LEU PRO ASP VAL SEQRES 14 B 473 PHE PRO PRO LEU GLU LEU ILE GLN ARG ASN ILE PRO ASN SEQRES 15 B 473 VAL TYR GLY MET LYS PHE PRO GLU ALA VAL VAL PRO LYS SEQRES 16 B 473 ASN GLY LYS GLU TYR SER ASP PHE VAL LEU TYR VAL LEU SEQRES 17 B 473 ARG GLN CYS VAL ASN LEU GLU LYS SER ASP LEU VAL LEU SEQRES 18 B 473 PHE ASN GLN PHE ASP LYS LEU VAL GLU PRO GLY GLU VAL SEQRES 19 B 473 LEU GLN TRP MET SER LYS ILE PHE ASN VAL LYS THR ILE SEQRES 20 B 473 GLY PRO THR LEU PRO SER ALA TYR ILE ASP LYS ARG ILE SEQRES 21 B 473 LYS ASP ASP VAL ALA TYR GLY PHE HIS ALA PHE ASN LEU SEQRES 22 B 473 ASP ASN ASP THR CYS MET ASN TRP LEU SER THR LYS PRO SEQRES 23 B 473 ALA GLY SER VAL ILE TYR ILE ALA PHE GLY SER SER VAL SEQRES 24 B 473 HIS TYR SER VAL GLU GLN MET THR GLU ILE ALA GLU ALA SEQRES 25 B 473 LEU ARG SER GLN PRO LYS ASN PHE LEU TRP ALA VAL ARG SEQRES 26 B 473 GLU THR GLU GLN VAL LYS LEU PRO ALA ASP PHE ILE GLU SEQRES 27 B 473 GLN THR ALA ASP LYS GLY LEU VAL LEU ALA TRP CYS PRO SEQRES 28 B 473 GLN LEU ASP VAL LEU LYS HIS GLU SER ILE GLY CYS PHE SEQRES 29 B 473 VAL THR HIS CYS GLY TRP ASN SER ILE THR GLU ALA LEU SEQRES 30 B 473 SER PHE GLY VAL PRO MET LEU SER VAL PRO GLN PHE LEU SEQRES 31 B 473 ASP GLN PRO VAL ASP ALA HIS PHE VAL GLU GLN VAL TRP SEQRES 32 B 473 GLY ALA GLY VAL THR VAL LYS ARG ASN GLU ASP GLY PHE SEQRES 33 B 473 VAL THR ARG ASP GLU ILE ILE ARG CYS LEU ASP GLU LEU SEQRES 34 B 473 ASN ASP GLY GLU ARG ALA ALA GLU ILE LYS ALA ASN VAL SEQRES 35 B 473 ALA ARG TRP LYS VAL LEU ALA LYS GLU ALA LEU GLU GLU SEQRES 36 B 473 GLY GLY SER SER ASP LYS HIS ILE ASP GLU ILE ILE GLU SEQRES 37 B 473 TRP VAL SER SER PHE HET UDP A 501 36 HET MG A 502 1 HET MG A 503 1 HET UDP B 501 36 HET MG B 502 1 HET MG B 503 1 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 UDP 2(C9 H14 N2 O12 P2) FORMUL 4 MG 4(MG 2+) FORMUL 9 HOH *834(H2 O) HELIX 1 AA1 GLY A 19 LYS A 34 1 16 HELIX 2 AA2 LEU A 45 VAL A 55 1 11 HELIX 3 AA3 TRP A 64 ALA A 66 5 3 HELIX 4 AA4 ASP A 78 VAL A 82 5 5 HELIX 5 AA5 ARG A 83 MET A 85 5 3 HELIX 6 AA6 ASP A 86 ALA A 110 1 25 HELIX 7 AA7 PRO A 123 LYS A 132 1 10 HELIX 8 AA8 SER A 143 GLN A 158 1 16 HELIX 9 AA9 GLU A 174 ARG A 178 5 5 HELIX 10 AB1 SER A 201 LEU A 208 1 8 HELIX 11 AB2 ARG A 209 VAL A 212 5 4 HELIX 12 AB3 ASN A 213 SER A 217 5 5 HELIX 13 AB4 PHE A 225 GLU A 230 1 6 HELIX 14 AB5 GLU A 233 PHE A 242 1 10 HELIX 15 AB6 PRO A 252 ILE A 256 5 5 HELIX 16 AB7 ASP A 276 SER A 283 1 8 HELIX 17 AB8 SER A 302 GLN A 316 1 15 HELIX 18 AB9 ARG A 325 VAL A 330 1 6 HELIX 19 AC1 ASP A 335 THR A 340 1 6 HELIX 20 AC2 PRO A 351 HIS A 358 1 8 HELIX 21 AC3 GLY A 369 GLY A 380 1 12 HELIX 22 AC4 LEU A 390 VAL A 402 1 13 HELIX 23 AC5 THR A 418 ASP A 431 1 14 HELIX 24 AC6 GLY A 432 GLU A 454 1 23 HELIX 25 AC7 GLY A 457 SER A 472 1 16 HELIX 26 AC8 HIS B 20 LYS B 34 1 15 HELIX 27 AC9 GLY B 46 ASP B 56 1 11 HELIX 28 AD1 ASP B 78 VAL B 82 5 5 HELIX 29 AD2 ARG B 83 MET B 85 5 3 HELIX 30 AD3 ASP B 86 ALA B 110 1 25 HELIX 31 AD4 PRO B 123 LYS B 132 1 10 HELIX 32 AD5 SER B 143 GLN B 158 1 16 HELIX 33 AD6 GLU B 174 ARG B 178 5 5 HELIX 34 AD7 SER B 201 LEU B 208 1 8 HELIX 35 AD8 ARG B 209 VAL B 212 5 4 HELIX 36 AD9 ASN B 213 SER B 217 5 5 HELIX 37 AE1 PHE B 225 GLU B 230 1 6 HELIX 38 AE2 GLU B 233 PHE B 242 1 10 HELIX 39 AE3 PRO B 252 ILE B 256 5 5 HELIX 40 AE4 ASP B 276 SER B 283 1 8 HELIX 41 AE5 SER B 302 GLN B 316 1 15 HELIX 42 AE6 ARG B 325 VAL B 330 1 6 HELIX 43 AE7 ASP B 335 THR B 340 1 6 HELIX 44 AE8 PRO B 351 HIS B 358 1 8 HELIX 45 AE9 GLY B 369 PHE B 379 1 11 HELIX 46 AF1 LEU B 390 VAL B 402 1 13 HELIX 47 AF2 THR B 418 ASP B 431 1 14 HELIX 48 AF3 GLY B 432 GLU B 454 1 23 HELIX 49 AF4 GLY B 457 SER B 472 1 16 SHEET 1 AA1 7 ILE A 68 TYR A 74 0 SHEET 2 AA1 7 VAL A 37 THR A 44 1 N ILE A 41 O ASP A 69 SHEET 3 AA1 7 ILE A 8 PHE A 13 1 N VAL A 12 O THR A 40 SHEET 4 AA1 7 VAL A 114 ASP A 119 1 O VAL A 117 N ILE A 11 SHEET 5 AA1 7 ARG A 135 PHE A 140 1 O ALA A 137 N LEU A 116 SHEET 6 AA1 7 LEU A 219 PHE A 222 1 O LEU A 221 N ALA A 138 SHEET 7 AA1 7 VAL A 244 THR A 246 1 O LYS A 245 N VAL A 220 SHEET 1 AA2 6 GLY A 344 LEU A 347 0 SHEET 2 AA2 6 PHE A 320 ALA A 323 1 N TRP A 322 O LEU A 345 SHEET 3 AA2 6 VAL A 290 ALA A 294 1 N ILE A 291 O LEU A 321 SHEET 4 AA2 6 ILE A 361 THR A 366 1 O VAL A 365 N TYR A 292 SHEET 5 AA2 6 MET A 383 SER A 385 1 O LEU A 384 N PHE A 364 SHEET 6 AA2 6 GLY A 406 THR A 408 1 O VAL A 407 N SER A 385 SHEET 1 AA3 7 ILE B 68 ASP B 75 0 SHEET 2 AA3 7 VAL B 37 LEU B 45 1 N LEU B 45 O TYR B 74 SHEET 3 AA3 7 ILE B 8 PHE B 13 1 N VAL B 12 O THR B 40 SHEET 4 AA3 7 VAL B 114 ASP B 119 1 O VAL B 117 N ILE B 11 SHEET 5 AA3 7 ARG B 135 PHE B 140 1 O ALA B 137 N LEU B 116 SHEET 6 AA3 7 LEU B 219 PHE B 222 1 O LEU B 221 N ALA B 138 SHEET 7 AA3 7 VAL B 244 THR B 246 1 O LYS B 245 N VAL B 220 SHEET 1 AA4 6 GLY B 344 LEU B 347 0 SHEET 2 AA4 6 ASN B 319 ALA B 323 1 N TRP B 322 O LEU B 345 SHEET 3 AA4 6 VAL B 290 ALA B 294 1 N ILE B 291 O LEU B 321 SHEET 4 AA4 6 ILE B 361 THR B 366 1 O VAL B 365 N TYR B 292 SHEET 5 AA4 6 MET B 383 SER B 385 1 O LEU B 384 N PHE B 364 SHEET 6 AA4 6 GLY B 406 THR B 408 1 O VAL B 407 N SER B 385 SSBOND 1 CYS A 278 CYS A 350 1555 1555 2.12 SSBOND 2 CYS B 278 CYS B 350 1555 1555 2.14 LINK O1A UDP A 501 MG MG A 502 1555 1555 2.28 LINK O2B UDP A 501 MG MG A 502 1555 1555 2.23 LINK MG MG A 502 O HOH A 861 1555 1555 2.22 LINK MG MG A 502 O HOH A 931 1555 1555 2.07 LINK MG MG A 503 O HOH A 626 1555 1555 2.01 LINK MG MG A 503 O HOH A 659 1555 1555 2.10 LINK MG MG A 503 O HOH A 788 1555 1555 2.07 LINK MG MG A 503 O HOH A 801 1555 1555 2.04 LINK MG MG A 503 O HOH A 816 1555 1555 2.03 LINK MG MG A 503 O HOH A1015 1555 1555 1.96 LINK NE2 HIS B 20 MG MG B 502 1555 1555 2.10 LINK O1A UDP B 501 MG MG B 502 1555 1555 2.05 LINK O3B UDP B 501 MG MG B 502 1555 1555 1.93 LINK MG MG B 502 O HOH B 658 1555 1555 2.07 LINK MG MG B 502 O HOH B 740 1555 1555 2.13 LINK MG MG B 502 O HOH B 865 1555 1555 2.07 LINK MG MG B 503 O HOH B 619 1555 1555 2.06 LINK MG MG B 503 O HOH B 657 1555 1555 2.35 LINK MG MG B 503 O HOH B 857 1555 1555 1.91 LINK MG MG B 503 O HOH B 975 1555 1555 2.18 CISPEP 1 GLY A 248 PRO A 249 0 -1.34 CISPEP 2 GLY B 248 PRO B 249 0 2.09 CRYST1 50.564 110.730 170.548 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019777 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005863 0.00000 CONECT 4144 5271 CONECT 5271 4144 CONECT 740314455 CONECT1134512477 CONECT1247711345 CONECT14381143821438614389 CONECT14382143811438314387 CONECT14383143821438414406 CONECT14384143831438514388 CONECT14385143841438614407 CONECT14386143811438514408 CONECT1438714382 CONECT1438814384 CONECT1438914381143901439414409 CONECT1439014389143911439214410 CONECT143911439014411 CONECT1439214390143931439514412 CONECT1439314392143941439614413 CONECT143941438914393 CONECT143951439214414 CONECT1439614393143971441514416 CONECT143971439614398 CONECT1439814397143991440014401 CONECT143991439814417 CONECT1440014398 CONECT144011439814402 CONECT1440214401144031440414405 CONECT1440314402 CONECT144041440214417 CONECT1440514402 CONECT1440614383 CONECT1440714385 CONECT1440814386 CONECT1440914389 CONECT1441014390 CONECT1441114391 CONECT1441214392 CONECT1441314393 CONECT1441414395 CONECT1441514396 CONECT1441614396 CONECT1441714399144041471714787 CONECT1441814482145151464414657 CONECT144181467214871 CONECT14419144201442414427 CONECT14420144191442114425 CONECT14421144201442214444 CONECT14422144211442314426 CONECT14423144221442414445 CONECT14424144191442314446 CONECT1442514420 CONECT1442614422 CONECT1442714419144281443214447 CONECT1442814427144291443014448 CONECT144291442814449 CONECT1443014428144311443314450 CONECT1443114430144321443414451 CONECT144321442714431 CONECT144331443014452 CONECT1443414431144351445314454 CONECT144351443414436 CONECT1443614435144371443814439 CONECT144371443614455 CONECT1443814436 CONECT144391443614440 CONECT1444014439144411444214443 CONECT1444114440 CONECT1444214440 CONECT144431444014455 CONECT1444414421 CONECT1444514423 CONECT1444614424 CONECT1444714427 CONECT1444814428 CONECT1444914429 CONECT1445014430 CONECT1445114431 CONECT1445214433 CONECT1445314434 CONECT1445414434 CONECT14455 7403144371444314938 CONECT144551502015145 CONECT1445614899149371513715255 CONECT1448214418 CONECT1451514418 CONECT1464414418 CONECT1465714418 CONECT1467214418 CONECT1471714417 CONECT1478714417 CONECT1487114418 CONECT1489914456 CONECT1493714456 CONECT1493814455 CONECT1502014455 CONECT1513714456 CONECT1514514455 CONECT1525514456 MASTER 427 0 6 49 26 0 0 6 8118 2 98 74 END