HEADER VIRAL PROTEIN 09-JUL-25 9PHQ TITLE CRYSTAL STRUCTURE OF THE A/PUERTO RICO/8/1934 (H1N1) INFLUENZA VIRUS TITLE 2 HEMAGGLUTININ IN COMPLEX WITH FUSION INHIBITOR CYCLIC PEPTIDE TITLE 3 CP141088 (CP14) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMAGGLUTININ HA2 CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: CYCLIC PEPTIDE CP141088; COMPND 11 CHAIN: G; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/PUERTO RICO/8/1934(H1N1)); SOURCE 3 ORGANISM_TAXID: 211044; SOURCE 4 GENE: HA; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/PUERTO RICO/8/1934(H1N1)); SOURCE 9 ORGANISM_TAXID: 211044; SOURCE 10 GENE: HA; SOURCE 11 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS INFLUENZA VIRUS, HEMAGGLUTININ, GLYCOPROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.U.KADAM,I.A.WILSON REVDAT 2 31-DEC-25 9PHQ 1 JRNL REVDAT 1 24-DEC-25 9PHQ 0 JRNL AUTH R.U.KADAM,J.JURASZEK,B.BRANDENBURG,D.GARG,X.ZHU, JRNL AUTH 2 M.JONGENEELEN,W.B.G.SCHEPENS,B.STOOPS,J.VERMOND,W.GOUTIER, JRNL AUTH 3 C.TANG,S.BLOKLAND,R.VOGELS,R.H.E.FRIESEN,M.J.P.VAN DONGEN, JRNL AUTH 4 I.A.WILSON JRNL TITL V H H ANTIBODY LOOP GUIDES DESIGN OF A SYNTHETIC MACROCYCLIC JRNL TITL 2 PEPTIDE THAT POTENTLY BLOCKS INFLUENZA VIRUS MEMBRANE JRNL TITL 3 FUSION. JRNL REF NPJ VIRUSES V. 3 83 2025 JRNL REFN ESSN 2948-1767 JRNL PMID 41413306 JRNL DOI 10.1038/S44298-025-00166-1 REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 15419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.630 REMARK 3 FREE R VALUE TEST SET COUNT : 714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5200 - 4.9100 1.00 3039 144 0.1984 0.2293 REMARK 3 2 4.9000 - 3.9000 1.00 2953 148 0.1818 0.2339 REMARK 3 3 3.8900 - 3.4000 1.00 2943 145 0.2014 0.2958 REMARK 3 4 3.4000 - 3.0900 1.00 2934 143 0.2380 0.3354 REMARK 3 5 3.0900 - 2.8700 0.98 2836 134 0.2549 0.3447 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.339 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4091 REMARK 3 ANGLE : 0.575 5542 REMARK 3 CHIRALITY : 0.060 604 REMARK 3 PLANARITY : 0.003 719 REMARK 3 DIHEDRAL : 5.650 567 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9PHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1000297851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0331 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15428 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.870 REMARK 200 RESOLUTION RANGE LOW (A) : 37.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 17.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: H1/PR8: 10 MG/ML, 0.2 M MAGNESIUM REMARK 280 NITRATE, 20% (W/V) POLYETHYLENE GLYCOL 3350., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 79.59750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.59750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.59750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.59750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 79.59750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 79.59750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 79.59750 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 79.59750 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 79.59750 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 79.59750 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 79.59750 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 79.59750 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 79.59750 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 79.59750 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 79.59750 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 79.59750 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 79.59750 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 79.59750 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 79.59750 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 79.59750 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 79.59750 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 79.59750 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 79.59750 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 79.59750 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 79.59750 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 79.59750 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 79.59750 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 79.59750 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 79.59750 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 79.59750 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 79.59750 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 79.59750 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 79.59750 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 79.59750 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 79.59750 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 79.59750 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 64110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -159.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 306 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 325 REMARK 465 ILE A 326 REMARK 465 GLN A 327 REMARK 465 SER A 328 REMARK 465 ARG A 329 REMARK 465 ILE B 61 REMARK 465 GLN B 62 REMARK 465 PHE B 63 REMARK 465 THR B 64 REMARK 465 ALA B 65 REMARK 465 VAL B 66 REMARK 465 LYS B 172 REMARK 465 VAL B 173 REMARK 465 ASP B 174 REMARK 465 GLY B 175 REMARK 465 VAL B 176 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 32 -73.05 -104.42 REMARK 500 CYS A 139 54.45 -116.74 REMARK 500 GLN A 196 -12.72 71.25 REMARK 500 ASN A 199 53.43 -100.02 REMARK 500 THR A 206 -158.45 -132.07 REMARK 500 ASN A 210 115.18 -161.76 REMARK 500 ASN A 250 -5.47 70.01 REMARK 500 GLN B 30 4.98 -66.75 REMARK 500 ALA B 35 113.45 -161.73 REMARK 500 LYS B 127 -143.19 59.04 REMARK 500 MET G 12 79.88 43.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 9PHQ A 11 329 UNP P03452 HEMA_I34A1 18 343 DBREF 9PHQ B 1 176 UNP P03452 HEMA_I34A1 344 519 DBREF 9PHQ G 1 13 PDB 9PHQ 9PHQ 1 13 SEQRES 1 A 326 ASP THR ILE CYS ILE GLY TYR HIS ALA ASN ASN SER THR SEQRES 2 A 326 ASP THR VAL ASP THR VAL LEU GLU LYS ASN VAL THR VAL SEQRES 3 A 326 THR HIS SER VAL ASN LEU LEU GLU ASP SER HIS ASN GLY SEQRES 4 A 326 LYS LEU CYS ARG LEU LYS GLY ILE ALA PRO LEU GLN LEU SEQRES 5 A 326 GLY LYS CYS ASN ILE ALA GLY TRP LEU LEU GLY ASN PRO SEQRES 6 A 326 GLU CYS ASP PRO LEU LEU PRO VAL ARG SER TRP SER TYR SEQRES 7 A 326 ILE VAL GLU THR PRO ASN SER GLU ASN GLY ILE CYS TYR SEQRES 8 A 326 PRO GLY ASP PHE ILE ASP TYR GLU GLU LEU ARG GLU GLN SEQRES 9 A 326 LEU SER SER VAL SER SER PHE GLU ARG PHE GLU ILE PHE SEQRES 10 A 326 PRO LYS GLU SER SER TRP PRO ASN HIS ASN THR ASN GLY SEQRES 11 A 326 VAL THR ALA ALA CYS SER HIS GLU GLY LYS SER SER PHE SEQRES 12 A 326 TYR ARG ASN LEU LEU TRP LEU THR GLU LYS GLU GLY SER SEQRES 13 A 326 TYR PRO LYS LEU LYS ASN SER TYR VAL ASN LYS LYS GLY SEQRES 14 A 326 LYS GLU VAL LEU VAL LEU TRP GLY ILE HIS HIS PRO PRO SEQRES 15 A 326 ASN SER LYS GLU GLN GLN ASN LEU TYR GLN ASN GLU ASN SEQRES 16 A 326 ALA TYR VAL SER VAL VAL THR SER ASN TYR ASN ARG ARG SEQRES 17 A 326 PHE THR PRO GLU ILE ALA GLU ARG PRO LYS VAL ARG ASP SEQRES 18 A 326 GLN ALA GLY ARG MET ASN TYR TYR TRP THR LEU LEU LYS SEQRES 19 A 326 PRO GLY ASP THR ILE ILE PHE GLU ALA ASN GLY ASN LEU SEQRES 20 A 326 ILE ALA PRO MET TYR ALA PHE ALA LEU SER ARG GLY PHE SEQRES 21 A 326 GLY SER GLY ILE ILE THR SER ASN ALA SER MET HIS GLU SEQRES 22 A 326 CYS ASN THR LYS CYS GLN THR PRO LEU GLY ALA ILE ASN SEQRES 23 A 326 SER SER LEU PRO TYR GLN ASN ILE HIS PRO VAL THR ILE SEQRES 24 A 326 GLY GLU CYS PRO LYS TYR VAL ARG SER ALA LYS LEU ARG SEQRES 25 A 326 MET VAL THR GLY LEU ARG ASN ILE PRO SER ILE GLN SER SEQRES 26 A 326 ARG SEQRES 1 B 176 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 B 176 TRP THR GLY MET ILE ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 B 176 GLN ASN GLU GLN GLY SER GLY TYR ALA ALA ASP GLN LYS SEQRES 4 B 176 SER THR GLN ASN ALA ILE ASN GLY ILE THR ASN LYS VAL SEQRES 5 B 176 ASN THR VAL ILE GLU LYS MET ASN ILE GLN PHE THR ALA SEQRES 6 B 176 VAL GLY LYS GLU PHE ASN LYS LEU GLU LYS ARG MET GLU SEQRES 7 B 176 ASN LEU ASN LYS LYS VAL ASP ASP GLY PHE LEU ASP ILE SEQRES 8 B 176 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU LEU GLU ASN SEQRES 9 B 176 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 B 176 LEU TYR GLU LYS VAL LYS SER GLN LEU LYS ASN ASN ALA SEQRES 11 B 176 LYS GLU ILE GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 B 176 CYS ASP ASN GLU CYS MET GLU SER VAL ARG ASN GLY THR SEQRES 13 B 176 TYR ASP TYR PRO LYS TYR SER GLU GLU SER LYS LEU ASN SEQRES 14 B 176 ARG GLU LYS VAL ASP GLY VAL SEQRES 1 G 13 LEU TYR GLU ASP PRO LEU GLY VAL ALA GLY GLY MET GLY HET NAG L 1 14 HET NAG L 2 14 HET NAG A 401 14 HET NAG A 402 14 HET NAG B 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 5(C8 H15 N O6) FORMUL 8 HOH *17(H2 O) HELIX 1 AA1 ASN A 65 GLY A 72 1 8 HELIX 2 AA2 ASP A 104 SER A 113 1 10 HELIX 3 AA3 ASN A 187 GLN A 196 1 10 HELIX 4 AA4 LYS A 222 GLN A 226 5 5 HELIX 5 AA5 ASP B 37 MET B 59 1 23 HELIX 6 AA6 GLU B 74 LYS B 127 1 54 HELIX 7 AA7 ASP B 145 ASN B 154 1 10 HELIX 8 AA8 ASP B 158 GLU B 171 1 14 SHEET 1 AA1 5 GLY B 31 ALA B 36 0 SHEET 2 AA1 5 TYR B 22 ASN B 28 -1 N TYR B 24 O ALA B 35 SHEET 3 AA1 5 THR A 12 TYR A 17 -1 N GLY A 16 O GLY B 23 SHEET 4 AA1 5 CYS B 137 PHE B 140 -1 O PHE B 138 N ILE A 13 SHEET 5 AA1 5 ALA B 130 GLU B 132 -1 N LYS B 131 O GLU B 139 SHEET 1 AA2 2 THR A 25 VAL A 26 0 SHEET 2 AA2 2 VAL A 34 THR A 35 -1 O VAL A 34 N VAL A 26 SHEET 1 AA3 2 SER A 39 ASN A 41 0 SHEET 2 AA3 2 ARG A 315 VAL A 317 -1 O MET A 316 N VAL A 40 SHEET 1 AA4 3 LEU A 43 GLU A 44 0 SHEET 2 AA4 3 TYR A 294 GLN A 295 1 O TYR A 294 N GLU A 44 SHEET 3 AA4 3 LYS A 307 TYR A 308 1 O LYS A 307 N GLN A 295 SHEET 1 AA5 2 LEU A 51 LEU A 54 0 SHEET 2 AA5 2 MET A 274 THR A 279 1 O THR A 279 N ARG A 53 SHEET 1 AA6 3 LEU A 59 GLN A 60 0 SHEET 2 AA6 3 ILE A 87 GLU A 89 1 O VAL A 88 N LEU A 59 SHEET 3 AA6 3 ILE A 267 THR A 269 1 O ILE A 268 N GLU A 89 SHEET 1 AA7 6 VAL A 82 SER A 83A 0 SHEET 2 AA7 6 VAL A 115 GLU A 122 -1 O PHE A 118 N ARG A 83 SHEET 3 AA7 6 TYR A 256 ARG A 262 -1 O ALA A 257 N PHE A 121 SHEET 4 AA7 6 GLU A 175 HIS A 184 -1 N GLU A 175 O LEU A 260 SHEET 5 AA7 6 LEU A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 6 AA7 6 LEU A 151 TRP A 153 -1 N LEU A 152 O ALA A 253 SHEET 1 AA8 5 VAL A 82 SER A 83A 0 SHEET 2 AA8 5 VAL A 115 GLU A 122 -1 O PHE A 118 N ARG A 83 SHEET 3 AA8 5 TYR A 256 ARG A 262 -1 O ALA A 257 N PHE A 121 SHEET 4 AA8 5 GLU A 175 HIS A 184 -1 N GLU A 175 O LEU A 260 SHEET 5 AA8 5 ARG A 229 LEU A 237 -1 O THR A 235 N VAL A 178 SHEET 1 AA9 2 THR A 136 HIS A 141 0 SHEET 2 AA9 2 LYS A 144 SER A 146 -1 O SER A 146 N THR A 136 SHEET 1 AB1 4 LEU A 164 VAL A 169 0 SHEET 2 AB1 4 THR A 242 ALA A 247 -1 O PHE A 245 N ASN A 166 SHEET 3 AB1 4 VAL A 202 VAL A 205 -1 N VAL A 205 O ILE A 244 SHEET 4 AB1 4 ASN A 210 PHE A 213 -1 O ARG A 211 N VAL A 204 SHEET 1 AB2 3 GLY A 286 ALA A 287 0 SHEET 2 AB2 3 CYS A 281 THR A 283 -1 N THR A 283 O GLY A 286 SHEET 3 AB2 3 ILE A 302 GLY A 303 -1 O ILE A 302 N GLN A 282 SSBOND 1 CYS A 14 CYS B 137 1555 1555 2.00 SSBOND 2 CYS A 52 CYS A 277 1555 1555 2.00 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.03 SSBOND 4 CYS A 97 CYS A 139 1555 1555 2.02 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.00 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.04 LINK ND2 ASN A 21 C1 NAG A 402 1555 1555 1.44 LINK ND2 ASN A 33 C1 NAG L 1 1555 1555 1.46 LINK ND2 ASN A 271 C1 NAG A 401 1555 1555 1.45 LINK ND2 ASN B 154 C1 NAG B 201 1555 1555 1.45 LINK N LEU G 1 C GLY G 13 1555 1555 1.32 LINK O4 NAG L 1 C1 NAG L 2 1555 1555 1.45 CRYST1 159.195 159.195 159.195 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006282 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006282 0.00000 TER 2511 PRO A 324 TER 3845 GLU B 171 TER 3934 GLY G 13 HETATM 3935 C1 NAG L 1 0.640 10.316 -23.430 1.00103.38 C HETATM 3936 C2 NAG L 1 -0.148 11.426 -24.083 1.00110.63 C HETATM 3937 C3 NAG L 1 0.792 12.282 -24.921 1.00117.81 C HETATM 3938 C4 NAG L 1 1.981 12.760 -24.089 1.00112.84 C HETATM 3939 C5 NAG L 1 2.588 11.637 -23.229 1.00102.35 C HETATM 3940 C6 NAG L 1 3.556 12.150 -22.187 1.00 98.23 C HETATM 3941 C7 NAG L 1 -2.491 10.822 -24.474 1.00104.08 C HETATM 3942 C8 NAG L 1 -3.477 10.236 -25.438 1.00104.01 C HETATM 3943 N2 NAG L 1 -1.225 10.890 -24.899 1.00102.34 N HETATM 3944 O3 NAG L 1 0.084 13.392 -25.461 1.00116.71 O HETATM 3945 O4 NAG L 1 2.997 13.212 -24.980 1.00112.30 O HETATM 3946 O5 NAG L 1 1.583 10.878 -22.528 1.00101.88 O HETATM 3947 O6 NAG L 1 3.269 13.495 -21.827 1.00 93.52 O HETATM 3948 O7 NAG L 1 -2.825 11.219 -23.362 1.00101.07 O HETATM 3949 C1 NAG L 2 3.172 14.650 -25.031 1.00118.64 C HETATM 3950 C2 NAG L 2 4.173 14.955 -26.154 1.00117.50 C HETATM 3951 C3 NAG L 2 4.389 16.460 -26.278 1.00116.33 C HETATM 3952 C4 NAG L 2 3.056 17.175 -26.449 1.00119.96 C HETATM 3953 C5 NAG L 2 2.104 16.792 -25.319 1.00114.47 C HETATM 3954 C6 NAG L 2 0.724 17.384 -25.483 1.00106.05 C HETATM 3955 C7 NAG L 2 5.825 13.204 -26.632 1.00107.20 C HETATM 3956 C8 NAG L 2 7.160 12.627 -26.270 1.00 96.56 C HETATM 3957 N2 NAG L 2 5.438 14.273 -25.930 1.00108.98 N HETATM 3958 O3 NAG L 2 5.233 16.730 -27.391 1.00110.64 O HETATM 3959 O4 NAG L 2 3.255 18.584 -26.444 1.00112.95 O HETATM 3960 O5 NAG L 2 1.943 15.366 -25.273 1.00112.79 O HETATM 3961 O6 NAG L 2 -0.059 16.629 -26.398 1.00120.29 O HETATM 3962 O7 NAG L 2 5.127 12.722 -27.519 1.00110.97 O HETATM 3963 C1 NAG A 401 -10.005 -12.161 -49.149 1.00120.87 C HETATM 3964 C2 NAG A 401 -10.815 -11.646 -47.959 1.00117.56 C HETATM 3965 C3 NAG A 401 -11.016 -10.137 -48.082 1.00120.65 C HETATM 3966 C4 NAG A 401 -9.681 -9.429 -48.282 1.00122.56 C HETATM 3967 C5 NAG A 401 -8.900 -10.064 -49.433 1.00118.50 C HETATM 3968 C6 NAG A 401 -7.509 -9.495 -49.590 1.00115.91 C HETATM 3969 C7 NAG A 401 -12.459 -13.057 -46.804 1.00119.84 C HETATM 3970 C8 NAG A 401 -13.825 -13.670 -46.865 1.00101.75 C HETATM 3971 N2 NAG A 401 -12.099 -12.322 -47.861 1.00116.09 N HETATM 3972 O3 NAG A 401 -11.665 -9.640 -46.917 1.00118.43 O HETATM 3973 O4 NAG A 401 -9.903 -8.055 -48.578 1.00118.57 O HETATM 3974 O5 NAG A 401 -8.750 -11.474 -49.208 1.00118.13 O HETATM 3975 O6 NAG A 401 -7.255 -8.472 -48.637 1.00114.58 O HETATM 3976 O7 NAG A 401 -11.714 -13.222 -45.843 1.00129.45 O HETATM 3977 C1 NAG A 402 17.308 6.483 -26.230 1.00 98.92 C HETATM 3978 C2 NAG A 402 17.684 6.955 -27.634 1.00108.55 C HETATM 3979 C3 NAG A 402 18.455 5.864 -28.371 1.00109.72 C HETATM 3980 C4 NAG A 402 19.659 5.424 -27.549 1.00108.14 C HETATM 3981 C5 NAG A 402 19.213 4.999 -26.154 1.00 96.72 C HETATM 3982 C6 NAG A 402 20.370 4.660 -25.243 1.00 95.05 C HETATM 3983 C7 NAG A 402 16.029 8.596 -28.405 1.00105.60 C HETATM 3984 C8 NAG A 402 14.804 8.823 -29.239 1.00 94.07 C HETATM 3985 N2 NAG A 402 16.504 7.347 -28.389 1.00112.34 N HETATM 3986 O3 NAG A 402 18.881 6.357 -29.636 1.00117.36 O HETATM 3987 O4 NAG A 402 20.317 4.337 -28.190 1.00115.92 O HETATM 3988 O5 NAG A 402 18.491 6.069 -25.525 1.00101.50 O HETATM 3989 O6 NAG A 402 20.029 3.629 -24.327 1.00 82.34 O HETATM 3990 O7 NAG A 402 16.562 9.502 -27.773 1.00100.69 O HETATM 3991 C1 NAG B 201 31.303 -2.337 2.853 1.00110.74 C HETATM 3992 C2 NAG B 201 32.572 -2.577 3.677 1.00104.86 C HETATM 3993 C3 NAG B 201 33.531 -3.499 2.928 1.00115.02 C HETATM 3994 C4 NAG B 201 32.818 -4.780 2.517 1.00115.27 C HETATM 3995 C5 NAG B 201 31.546 -4.450 1.739 1.00117.85 C HETATM 3996 C6 NAG B 201 30.738 -5.673 1.372 1.00106.10 C HETATM 3997 C7 NAG B 201 33.724 -0.449 3.156 1.00104.31 C HETATM 3998 C8 NAG B 201 34.348 0.782 3.741 1.00 89.12 C HETATM 3999 N2 NAG B 201 33.223 -1.325 4.037 1.00105.00 N HETATM 4000 O3 NAG B 201 34.644 -3.803 3.761 1.00109.93 O HETATM 4001 O4 NAG B 201 33.677 -5.577 1.709 1.00117.12 O HETATM 4002 O5 NAG B 201 30.693 -3.603 2.527 1.00120.69 O HETATM 4003 O6 NAG B 201 29.928 -6.109 2.454 1.00111.13 O HETATM 4004 O7 NAG B 201 33.682 -0.640 1.944 1.00112.36 O HETATM 4005 O HOH A 501 4.872 6.674 -9.112 1.00 43.97 O HETATM 4006 O HOH A 502 -28.600 -29.378 -44.247 1.00 81.02 O HETATM 4007 O HOH A 503 8.766 -21.347 -40.003 1.00 58.88 O HETATM 4008 O HOH A 504 9.326 -13.439 -33.113 1.00 66.70 O HETATM 4009 O HOH A 505 -1.704 -1.131 -20.309 1.00 32.97 O HETATM 4010 O HOH A 506 7.751 -12.355 -35.441 1.00 53.60 O HETATM 4011 O HOH A 507 3.574 -23.560 -50.980 1.00 58.53 O HETATM 4012 O HOH A 508 -7.442 -61.273 -45.819 1.00 59.78 O HETATM 4013 O HOH A 509 4.832 -12.251 -36.199 1.00 59.87 O HETATM 4014 O HOH A 510 3.753 1.533 -25.708 1.00 38.29 O HETATM 4015 O HOH A 511 5.162 -20.878 -51.390 1.00 61.25 O HETATM 4016 O HOH B 301 -12.387 -3.646 -23.879 1.00 51.43 O HETATM 4017 O HOH B 302 27.654 7.371 -4.531 1.00 52.48 O HETATM 4018 O HOH B 303 2.130 -6.243 -6.348 1.00 37.50 O HETATM 4019 O HOH B 304 16.531 14.934 -7.912 1.00 70.01 O HETATM 4020 O HOH B 305 37.590 -1.193 4.809 1.00 72.59 O HETATM 4021 O HOH B 306 -4.837 -4.837 -4.837 0.33 33.09 O CONECT 29 3550 CONECT 84 3977 CONECT 175 3935 CONECT 318 2149 CONECT 414 503 CONECT 503 414 CONECT 684 1051 CONECT 1051 684 CONECT 2105 3963 CONECT 2149 318 CONECT 2179 2357 CONECT 2357 2179 CONECT 3550 29 CONECT 3618 3649 CONECT 3649 3618 CONECT 3698 3991 CONECT 3846 3932 CONECT 3932 3846 CONECT 3935 175 3936 3946 CONECT 3936 3935 3937 3943 CONECT 3937 3936 3938 3944 CONECT 3938 3937 3939 3945 CONECT 3939 3938 3940 3946 CONECT 3940 3939 3947 CONECT 3941 3942 3943 3948 CONECT 3942 3941 CONECT 3943 3936 3941 CONECT 3944 3937 CONECT 3945 3938 3949 CONECT 3946 3935 3939 CONECT 3947 3940 CONECT 3948 3941 CONECT 3949 3945 3950 3960 CONECT 3950 3949 3951 3957 CONECT 3951 3950 3952 3958 CONECT 3952 3951 3953 3959 CONECT 3953 3952 3954 3960 CONECT 3954 3953 3961 CONECT 3955 3956 3957 3962 CONECT 3956 3955 CONECT 3957 3950 3955 CONECT 3958 3951 CONECT 3959 3952 CONECT 3960 3949 3953 CONECT 3961 3954 CONECT 3962 3955 CONECT 3963 2105 3964 3974 CONECT 3964 3963 3965 3971 CONECT 3965 3964 3966 3972 CONECT 3966 3965 3967 3973 CONECT 3967 3966 3968 3974 CONECT 3968 3967 3975 CONECT 3969 3970 3971 3976 CONECT 3970 3969 CONECT 3971 3964 3969 CONECT 3972 3965 CONECT 3973 3966 CONECT 3974 3963 3967 CONECT 3975 3968 CONECT 3976 3969 CONECT 3977 84 3978 3988 CONECT 3978 3977 3979 3985 CONECT 3979 3978 3980 3986 CONECT 3980 3979 3981 3987 CONECT 3981 3980 3982 3988 CONECT 3982 3981 3989 CONECT 3983 3984 3985 3990 CONECT 3984 3983 CONECT 3985 3978 3983 CONECT 3986 3979 CONECT 3987 3980 CONECT 3988 3977 3981 CONECT 3989 3982 CONECT 3990 3983 CONECT 3991 3698 3992 4002 CONECT 3992 3991 3993 3999 CONECT 3993 3992 3994 4000 CONECT 3994 3993 3995 4001 CONECT 3995 3994 3996 4002 CONECT 3996 3995 4003 CONECT 3997 3998 3999 4004 CONECT 3998 3997 CONECT 3999 3992 3997 CONECT 4000 3993 CONECT 4001 3994 CONECT 4002 3991 3995 CONECT 4003 3996 CONECT 4004 3997 MASTER 354 0 5 8 37 0 0 6 4018 3 88 41 END