HEADER VIRAL PROTEIN 09-JUL-25 9PHT TITLE CRYSTAL STRUCTURE OF THE A/VIETNAM/1203/2004 (H5N1) INFLUENZA VIRUS TITLE 2 HEMAGGLUTININ IN COMPLEX WITH FUSION INHIBITOR CYCLIC PEPTIDE TITLE 3 CP141085 (CP1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HA1 SUBDOMAIN (UNP RESIDUES 17-346); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEMAGGLUTININ; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: CYCLIC PEPTIDE CP141085; COMPND 12 CHAIN: G; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/VIET NAM/1203/2004(H5N1)); SOURCE 3 ORGANISM_TAXID: 284218; SOURCE 4 GENE: HA; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/VIET NAM/1203/2004(H5N1)); SOURCE 9 ORGANISM_TAXID: 284218; SOURCE 10 GENE: HA; SOURCE 11 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS INFLUENZA VIRUS, HEMAGGLUTININ, GLYCOPROTEIN, N-GLYCOSYLATION, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.U.KADAM,I.A.WILSON REVDAT 2 31-DEC-25 9PHT 1 JRNL REVDAT 1 24-DEC-25 9PHT 0 JRNL AUTH R.U.KADAM,J.JURASZEK,B.BRANDENBURG,D.GARG,X.ZHU, JRNL AUTH 2 M.JONGENEELEN,W.B.G.SCHEPENS,B.STOOPS,J.VERMOND,W.GOUTIER, JRNL AUTH 3 C.TANG,S.BLOKLAND,R.VOGELS,R.H.E.FRIESEN,M.J.P.VAN DONGEN, JRNL AUTH 4 I.A.WILSON JRNL TITL V H H ANTIBODY LOOP GUIDES DESIGN OF A SYNTHETIC MACROCYCLIC JRNL TITL 2 PEPTIDE THAT POTENTLY BLOCKS INFLUENZA VIRUS MEMBRANE JRNL TITL 3 FUSION. JRNL REF NPJ VIRUSES V. 3 83 2025 JRNL REFN ESSN 2948-1767 JRNL PMID 41413306 JRNL DOI 10.1038/S44298-025-00166-1 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0000 - 6.1300 1.00 2642 158 0.2965 0.3352 REMARK 3 2 6.1300 - 4.8700 1.00 2545 136 0.2400 0.2489 REMARK 3 3 4.8700 - 4.2600 1.00 2529 128 0.2389 0.2766 REMARK 3 4 4.2500 - 3.8700 1.00 2538 104 0.2418 0.2985 REMARK 3 5 3.8700 - 3.5900 1.00 2490 134 0.2500 0.2501 REMARK 3 6 3.5900 - 3.3800 1.00 2499 116 0.2480 0.2585 REMARK 3 7 3.3800 - 3.2100 1.00 2487 124 0.2502 0.3331 REMARK 3 8 3.2100 - 3.0700 1.00 2470 145 0.2420 0.2769 REMARK 3 9 3.0700 - 2.9500 1.00 2468 135 0.2590 0.2952 REMARK 3 10 2.9500 - 2.8500 1.00 2437 146 0.2886 0.3305 REMARK 3 11 2.8500 - 2.7600 0.99 2451 148 0.2793 0.3556 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.377 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.093 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4256 REMARK 3 ANGLE : 0.629 5761 REMARK 3 CHIRALITY : 0.051 620 REMARK 3 PLANARITY : 0.004 752 REMARK 3 DIHEDRAL : 9.444 579 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9PHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1000297859. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0331 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29032 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.760 REMARK 200 RESOLUTION RANGE LOW (A) : 47.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: H5/VIET: 10 MG/ML, 0.2 M DI-SODIUM REMARK 280 TARTRATE, 20% (W/V) POLYETHYLENE GLYCOL 3350., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -155.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 58.19400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -100.79496 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 116.38800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 211 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 7 REMARK 465 GLN A 325 REMARK 465 ARG A 326 REMARK 465 GLU A 327 REMARK 465 ARG A 328 REMARK 465 ARG A 329 REMARK 465 ARG A 330 REMARK 465 LYS A 331 REMARK 465 LYS A 332 REMARK 465 ARG A 333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 62 -116.82 52.28 REMARK 500 ASN A 81 79.80 -152.77 REMARK 500 ASP A 96 -108.72 -114.52 REMARK 500 SER A 113 8.35 -58.84 REMARK 500 CYS A 139 77.03 -116.95 REMARK 500 ASN A 170 94.81 -61.82 REMARK 500 GLN A 196 -54.54 67.07 REMARK 500 ASN A 240 -7.21 73.06 REMARK 500 PRO A 284 2.31 -69.44 REMARK 500 ALA B 5 -69.02 -92.06 REMARK 500 ARG B 127 -137.46 59.14 REMARK 500 REMARK 500 REMARK: NULL DBREF 9PHT A 11 333 UNP Q5EP31 Q5EP31_9INFA 17 346 DBREF 9PHT B 1 174 UNP Q5EP31 Q5EP31_9INFA 347 520 DBREF 9PHT G 1 19 PDB 9PHT 9PHT 1 19 SEQADV 9PHT ALA A 7 UNP Q5EP31 EXPRESSION TAG SEQADV 9PHT ASP A 8 UNP Q5EP31 EXPRESSION TAG SEQADV 9PHT PRO A 9 UNP Q5EP31 EXPRESSION TAG SEQADV 9PHT GLY A 10 UNP Q5EP31 EXPRESSION TAG SEQADV 9PHT SER B 175 UNP Q5EP31 EXPRESSION TAG SEQRES 1 A 334 ALA ASP PRO GLY ASP GLN ILE CYS ILE GLY TYR HIS ALA SEQRES 2 A 334 ASN ASN SER THR GLU GLN VAL ASP THR ILE MET GLU LYS SEQRES 3 A 334 ASN VAL THR VAL THR HIS ALA GLN ASP ILE LEU GLU LYS SEQRES 4 A 334 LYS HIS ASN GLY LYS LEU CYS ASP LEU ASP GLY VAL LYS SEQRES 5 A 334 PRO LEU ILE LEU ARG ASP CYS SER VAL ALA GLY TRP LEU SEQRES 6 A 334 LEU GLY ASN PRO MET CYS ASP GLU PHE ILE ASN VAL PRO SEQRES 7 A 334 GLU TRP SER TYR ILE VAL GLU LYS ALA ASN PRO VAL ASN SEQRES 8 A 334 ASP LEU CYS TYR PRO GLY ASP PHE ASN ASP TYR GLU GLU SEQRES 9 A 334 LEU LYS HIS LEU LEU SER ARG ILE ASN HIS PHE GLU LYS SEQRES 10 A 334 ILE GLN ILE ILE PRO LYS SER SER TRP SER SER HIS GLU SEQRES 11 A 334 ALA SER LEU GLY VAL SER SER ALA CYS PRO TYR GLN GLY SEQRES 12 A 334 LYS SER SER PHE PHE ARG ASN VAL VAL TRP LEU ILE LYS SEQRES 13 A 334 LYS ASN SER THR TYR PRO THR ILE LYS ARG SER TYR ASN SEQRES 14 A 334 ASN THR ASN GLN GLU ASP LEU LEU VAL LEU TRP GLY ILE SEQRES 15 A 334 HIS HIS PRO ASN ASP ALA ALA GLU GLN THR LYS LEU TYR SEQRES 16 A 334 GLN ASN PRO THR THR TYR ILE SER VAL GLY THR SER THR SEQRES 17 A 334 LEU ASN GLN ARG LEU VAL PRO ARG ILE ALA THR ARG SER SEQRES 18 A 334 LYS VAL ASN GLY GLN SER GLY ARG MET GLU PHE PHE TRP SEQRES 19 A 334 THR ILE LEU LYS PRO ASN ASP ALA ILE ASN PHE GLU SER SEQRES 20 A 334 ASN GLY ASN PHE ILE ALA PRO GLU TYR ALA TYR LYS ILE SEQRES 21 A 334 VAL LYS LYS GLY ASP SER THR ILE MET LYS SER GLU LEU SEQRES 22 A 334 GLU TYR GLY ASN CYS ASN THR LYS CYS GLN THR PRO MET SEQRES 23 A 334 GLY ALA ILE ASN SER SER MET PRO PHE HIS ASN ILE HIS SEQRES 24 A 334 PRO LEU THR ILE GLY GLU CYS PRO LYS TYR VAL LYS SER SEQRES 25 A 334 ASN ARG LEU VAL LEU ALA THR GLY LEU ARG ASN SER PRO SEQRES 26 A 334 GLN ARG GLU ARG ARG ARG LYS LYS ARG SEQRES 1 B 175 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 B 175 TRP GLN GLY MET VAL ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 B 175 SER ASN GLU GLN GLY SER GLY TYR ALA ALA ASP LYS GLU SEQRES 4 B 175 SER THR GLN LYS ALA ILE ASP GLY VAL THR ASN LYS VAL SEQRES 5 B 175 ASN SER ILE ILE ASP LYS MET ASN THR GLN PHE GLU ALA SEQRES 6 B 175 VAL GLY ARG GLU PHE ASN ASN LEU GLU ARG ARG ILE GLU SEQRES 7 B 175 ASN LEU ASN LYS LYS MET GLU ASP GLY PHE LEU ASP VAL SEQRES 8 B 175 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU MET GLU ASN SEQRES 9 B 175 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 B 175 LEU TYR ASP LYS VAL ARG LEU GLN LEU ARG ASP ASN ALA SEQRES 11 B 175 LYS GLU LEU GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 B 175 CYS ASP ASN GLU CYS MET GLU SER VAL ARG ASN GLY THR SEQRES 13 B 175 TYR ASP TYR PRO GLN TYR SER GLU GLU ALA ARG LEU LYS SEQRES 14 B 175 ARG GLU GLU ILE SER SER SEQRES 1 G 19 DPR PRO VAL SER LEU TYR GLU ASP PRO LEU GLY VAL ALA SEQRES 2 G 19 GLY GLY MET GLY VAL TYR HET DPR G 1 7 HET NAG A 401 14 HET NAG A 402 14 HET NAG A 403 14 HETNAM DPR D-PROLINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 DPR C5 H9 N O2 FORMUL 4 NAG 3(C8 H15 N O6) FORMUL 7 HOH *70(H2 O) HELIX 1 AA1 SER A 65 GLY A 72 1 8 HELIX 2 AA2 ASN A 73 ILE A 80 5 8 HELIX 3 AA3 ASP A 104 SER A 113 1 10 HELIX 4 AA4 PRO A 125 TRP A 127 5 5 HELIX 5 AA5 ASP A 187 GLN A 196 1 10 HELIX 6 AA6 ASP B 37 MET B 59 1 23 HELIX 7 AA7 ASN B 60 GLN B 62 5 3 HELIX 8 AA8 GLU B 74 ARG B 127 1 54 HELIX 9 AA9 ASP B 145 ASN B 154 1 10 HELIX 10 AB1 TYR B 162 SER B 174 1 13 SHEET 1 AA1 5 GLY B 31 ALA B 36 0 SHEET 2 AA1 5 TYR B 22 ASN B 28 -1 N TYR B 24 O ALA B 35 SHEET 3 AA1 5 GLN A 12 TYR A 17 -1 N GLN A 12 O SER B 27 SHEET 4 AA1 5 CYS B 137 PHE B 140 -1 O PHE B 138 N ILE A 13 SHEET 5 AA1 5 ALA B 130 GLU B 132 -1 N LYS B 131 O GLU B 139 SHEET 1 AA2 2 GLN A 25 VAL A 26 0 SHEET 2 AA2 2 VAL A 34 THR A 35 -1 O VAL A 34 N VAL A 26 SHEET 1 AA3 2 ALA A 39 ASP A 41 0 SHEET 2 AA3 2 VAL A 315 ALA A 317 -1 O LEU A 316 N GLN A 40 SHEET 1 AA4 3 LEU A 43 GLU A 44 0 SHEET 2 AA4 3 PHE A 294 HIS A 295 1 O PHE A 294 N GLU A 44 SHEET 3 AA4 3 LYS A 307 TYR A 308 1 O LYS A 307 N HIS A 295 SHEET 1 AA5 2 LEU A 51 LEU A 54 0 SHEET 2 AA5 2 TYR A 274 THR A 279 1 O GLY A 275 N LEU A 51 SHEET 1 AA6 3 LEU A 59 ILE A 60 0 SHEET 2 AA6 3 ILE A 87 GLU A 89 1 O VAL A 88 N LEU A 59 SHEET 3 AA6 3 ILE A 267 LYS A 269 1 O MET A 268 N ILE A 87 SHEET 1 AA7 5 GLY A 100 PHE A 102 0 SHEET 2 AA7 5 ARG A 229 LEU A 237 1 O PHE A 232 N ASP A 101 SHEET 3 AA7 5 LEU A 176 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 AA7 5 TYR A 256 LYS A 262 -1 O TYR A 258 N LEU A 177 SHEET 5 AA7 5 ILE A 115 GLN A 122 -1 N ASN A 116 O LYS A 261 SHEET 1 AA8 5 GLY A 100 PHE A 102 0 SHEET 2 AA8 5 ARG A 229 LEU A 237 1 O PHE A 232 N ASP A 101 SHEET 3 AA8 5 LEU A 176 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 AA8 5 PHE A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 5 AA8 5 VAL A 151 TRP A 153 -1 N VAL A 152 O ALA A 253 SHEET 1 AA9 2 SER A 136 TYR A 141 0 SHEET 2 AA9 2 LYS A 144 SER A 146 -1 O SER A 146 N SER A 136 SHEET 1 AB1 4 ILE A 164 ASN A 169 0 SHEET 2 AB1 4 ALA A 242 SER A 247 -1 O PHE A 245 N ARG A 166 SHEET 3 AB1 4 ILE A 202 GLY A 205 -1 N SER A 203 O GLU A 246 SHEET 4 AB1 4 ASN A 210 LEU A 213 -1 O LEU A 213 N ILE A 202 SHEET 1 AB2 3 GLY A 286 ALA A 287 0 SHEET 2 AB2 3 CYS A 281 THR A 283 -1 N THR A 283 O GLY A 286 SHEET 3 AB2 3 ILE A 302 GLY A 303 -1 O ILE A 302 N GLN A 282 SSBOND 1 CYS A 14 CYS B 137 1555 1555 2.03 SSBOND 2 CYS A 52 CYS A 277 1555 1555 2.05 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.03 SSBOND 4 CYS A 97 CYS A 139 1555 1555 2.03 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.03 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.03 LINK ND2 ASN A 33 C1 NAG A 403 1555 1555 1.45 LINK ND2 ASN A 169 C1 NAG A 402 1555 1555 1.44 LINK ND2 ASN A 289 C1 NAG A 401 1555 1555 1.45 LINK C DPR G 1 N PRO G 2 1555 1555 1.34 LINK N DPR G 1 C TYR G 19 1555 1555 1.52 CRYST1 116.388 116.388 141.506 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008592 0.004961 0.000000 0.00000 SCALE2 0.000000 0.009921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007067 0.00000 TER 2569 PRO A 324 TER 3988 SER B 175 HETATM 3989 N DPR G 1 21.961 -35.488 3.578 1.00 71.37 N HETATM 3990 CA DPR G 1 21.032 -35.977 4.603 1.00 69.51 C HETATM 3991 CB DPR G 1 20.935 -34.793 5.570 1.00 60.95 C HETATM 3992 CG DPR G 1 21.215 -33.600 4.726 1.00 67.50 C HETATM 3993 CD DPR G 1 22.240 -34.049 3.724 1.00 72.83 C HETATM 3994 C DPR G 1 21.542 -37.211 5.351 1.00 75.40 C HETATM 3995 O DPR G 1 22.584 -37.140 6.001 1.00 78.94 O TER 4123 TYR G 19 HETATM 4124 C1 NAG A 401 24.838 -32.105 28.398 1.00 88.16 C HETATM 4125 C2 NAG A 401 24.749 -32.453 26.913 1.00 92.32 C HETATM 4126 C3 NAG A 401 23.287 -32.684 26.530 1.00 97.33 C HETATM 4127 C4 NAG A 401 22.641 -33.705 27.460 1.00105.15 C HETATM 4128 C5 NAG A 401 22.880 -33.341 28.926 1.00102.44 C HETATM 4129 C6 NAG A 401 22.385 -34.394 29.891 1.00100.68 C HETATM 4130 C7 NAG A 401 25.662 -31.571 24.808 1.00101.32 C HETATM 4131 C8 NAG A 401 26.255 -30.378 24.121 1.00 88.26 C HETATM 4132 N2 NAG A 401 25.335 -31.404 26.094 1.00101.02 N HETATM 4133 O3 NAG A 401 23.194 -33.131 25.181 1.00 97.92 O HETATM 4134 O4 NAG A 401 21.238 -33.753 27.221 1.00107.39 O HETATM 4135 O5 NAG A 401 24.285 -33.173 29.174 1.00 90.28 O HETATM 4136 O6 NAG A 401 22.950 -35.667 29.612 1.00103.72 O HETATM 4137 O7 NAG A 401 25.484 -32.635 24.223 1.00102.84 O HETATM 4138 C1 NAG A 402 39.253 -56.991 71.172 1.00 79.44 C HETATM 4139 C2 NAG A 402 40.559 -57.668 71.596 1.00 88.97 C HETATM 4140 C3 NAG A 402 40.812 -58.905 70.749 1.00 91.65 C HETATM 4141 C4 NAG A 402 39.618 -59.846 70.820 1.00100.97 C HETATM 4142 C5 NAG A 402 38.344 -59.109 70.420 1.00101.31 C HETATM 4143 C6 NAG A 402 37.102 -59.948 70.611 1.00101.96 C HETATM 4144 C7 NAG A 402 42.294 -56.254 72.592 1.00 83.56 C HETATM 4145 C8 NAG A 402 43.446 -55.338 72.328 1.00 67.67 C HETATM 4146 N2 NAG A 402 41.692 -56.759 71.513 1.00 87.77 N HETATM 4147 O3 NAG A 402 41.979 -59.566 71.222 1.00 90.81 O HETATM 4148 O4 NAG A 402 39.820 -60.945 69.939 1.00108.76 O HETATM 4149 O5 NAG A 402 38.176 -57.943 71.239 1.00 91.94 O HETATM 4150 O6 NAG A 402 36.264 -59.894 69.465 1.00107.89 O HETATM 4151 O7 NAG A 402 41.923 -56.521 73.733 1.00 88.96 O HETATM 4152 C1 NAG A 403 45.735 -14.104 14.504 1.00 74.06 C HETATM 4153 C2 NAG A 403 46.762 -13.018 14.834 1.00 80.91 C HETATM 4154 C3 NAG A 403 46.525 -12.481 16.242 1.00 82.47 C HETATM 4155 C4 NAG A 403 45.093 -11.984 16.378 1.00 83.46 C HETATM 4156 C5 NAG A 403 44.115 -13.094 16.006 1.00 78.09 C HETATM 4157 C6 NAG A 403 42.677 -12.631 16.002 1.00 74.81 C HETATM 4158 C7 NAG A 403 49.018 -12.955 13.873 1.00 84.48 C HETATM 4159 C8 NAG A 403 50.378 -13.585 13.858 1.00 83.27 C HETATM 4160 N2 NAG A 403 48.122 -13.511 14.697 1.00 79.00 N HETATM 4161 O3 NAG A 403 47.441 -11.426 16.512 1.00 78.60 O HETATM 4162 O4 NAG A 403 44.842 -11.557 17.713 1.00 85.69 O HETATM 4163 O5 NAG A 403 44.398 -13.579 14.682 1.00 81.19 O HETATM 4164 O6 NAG A 403 41.820 -13.589 15.397 1.00 74.06 O HETATM 4165 O7 NAG A 403 48.740 -11.989 13.170 1.00 83.65 O HETATM 4166 O HOH A 501 44.775 -19.928 14.904 1.00 47.75 O HETATM 4167 O HOH A 502 51.317 -48.688 71.263 1.00 40.30 O HETATM 4168 O HOH A 503 40.681 -24.476 -1.103 1.00 37.96 O HETATM 4169 O HOH A 504 40.526 -17.618 79.204 1.00 52.21 O HETATM 4170 O HOH A 505 38.972 -22.020 14.499 1.00 56.87 O HETATM 4171 O HOH A 506 26.153 -36.955 49.516 1.00 38.97 O HETATM 4172 O HOH A 507 24.657 -40.319 36.400 1.00 50.65 O HETATM 4173 O HOH A 508 47.486 -49.359 64.292 1.00 40.84 O HETATM 4174 O HOH A 509 46.369 -31.660 11.505 1.00 33.98 O HETATM 4175 O HOH A 510 34.350 -26.464 7.342 1.00 38.67 O HETATM 4176 O HOH A 511 47.453 -39.665 56.309 1.00 29.25 O HETATM 4177 O HOH A 512 44.633 -49.622 65.332 1.00 42.09 O HETATM 4178 O HOH A 513 33.882 -24.849 54.032 1.00 38.81 O HETATM 4179 O HOH A 514 23.364 -38.603 46.111 1.00 40.63 O HETATM 4180 O HOH A 515 37.874 -21.494 29.601 1.00 35.39 O HETATM 4181 O HOH A 516 53.307 -36.263 54.264 1.00 24.17 O HETATM 4182 O HOH A 517 47.224 -36.814 66.237 1.00 28.04 O HETATM 4183 O HOH A 518 41.341 -32.712 34.287 1.00 38.14 O HETATM 4184 O HOH A 519 33.999 -21.293 9.202 1.00 43.45 O HETATM 4185 O HOH A 520 49.356 -33.283 58.593 1.00 26.02 O HETATM 4186 O HOH A 521 28.007 -30.577 77.883 1.00 51.02 O HETATM 4187 O HOH A 522 40.437 -23.924 20.565 1.00 34.97 O HETATM 4188 O HOH A 523 53.557 -30.735 77.062 1.00 50.65 O HETATM 4189 O HOH A 524 35.557 -27.288 10.011 1.00 45.57 O HETATM 4190 O HOH A 525 53.244 -38.682 73.285 1.00 43.96 O HETATM 4191 O HOH A 526 25.335 -41.133 57.953 1.00 44.59 O HETATM 4192 O HOH A 527 48.763 -30.240 61.397 1.00 32.00 O HETATM 4193 O HOH A 528 28.489 -34.556 26.109 1.00 57.64 O HETATM 4194 O HOH A 529 37.805 -41.193 36.110 1.00 46.34 O HETATM 4195 O HOH A 530 35.649 -20.490 79.073 1.00 57.52 O HETATM 4196 O HOH A 531 53.340 -23.444 6.970 1.00 46.76 O HETATM 4197 O HOH A 532 50.887 -31.692 63.007 1.00 34.20 O HETATM 4198 O HOH A 533 46.221 -24.081 15.817 1.00 33.73 O HETATM 4199 O HOH A 534 27.015 -35.795 52.024 1.00 44.25 O HETATM 4200 O HOH A 535 46.080 -33.042 52.309 1.00 37.90 O HETATM 4201 O HOH A 536 46.506 -44.102 62.517 1.00 32.80 O HETATM 4202 O HOH A 537 47.697 -38.982 63.947 1.00 32.83 O HETATM 4203 O HOH A 538 50.839 -20.583 17.807 1.00 33.64 O HETATM 4204 O HOH A 539 46.592 -36.707 91.528 1.00 48.84 O HETATM 4205 O HOH A 540 24.531 -32.920 54.963 1.00 51.40 O HETATM 4206 O HOH A 541 31.820 -20.758 30.904 1.00 44.76 O HETATM 4207 O HOH A 542 42.340 -26.408 61.789 1.00 52.12 O HETATM 4208 O HOH A 543 46.430 -23.291 18.190 1.00 34.23 O HETATM 4209 O HOH A 544 44.087 -33.498 33.771 1.00 41.53 O HETATM 4210 O HOH A 545 34.258 -42.274 85.374 1.00 42.37 O HETATM 4211 O HOH A 546 42.679 -21.999 36.438 1.00 40.44 O HETATM 4212 O HOH A 547 33.983 -24.074 81.713 1.00 48.48 O HETATM 4213 O HOH A 548 33.088 -24.222 8.933 1.00 44.29 O HETATM 4214 O HOH A 549 25.580 -33.764 52.737 1.00 42.66 O HETATM 4215 O HOH A 550 28.639 -19.699 -0.090 1.00 42.09 O HETATM 4216 O HOH A 551 34.241 -16.646 43.983 1.00 36.88 O HETATM 4217 O HOH B 201 41.710 -42.064 -32.260 1.00 63.98 O HETATM 4218 O HOH B 202 57.154 -24.983 34.115 1.00 35.75 O HETATM 4219 O HOH B 203 41.616 -26.290 -7.828 1.00 43.17 O HETATM 4220 O HOH B 204 53.378 -24.361 25.909 1.00 33.02 O HETATM 4221 O HOH B 205 51.037 -27.067 46.779 1.00 27.77 O HETATM 4222 O HOH B 206 37.891 -45.947 4.824 1.00 51.22 O HETATM 4223 O HOH B 207 53.136 -36.774 33.453 1.00 25.29 O HETATM 4224 O HOH B 208 54.703 -22.654 50.115 1.00 35.94 O HETATM 4225 O HOH B 209 45.106 -32.096 35.668 1.00 39.76 O HETATM 4226 O HOH B 210 49.406 -24.950 19.231 1.00 31.80 O HETATM 4227 O HOH B 211 58.194 -33.598 26.466 0.33 30.71 O HETATM 4228 O HOH B 212 57.498 -25.163 38.105 1.00 37.46 O HETATM 4229 O HOH B 213 42.313 -40.943 33.378 1.00 48.89 O HETATM 4230 O HOH B 214 55.466 -26.408 4.569 1.00 52.54 O HETATM 4231 O HOH B 215 48.004 -21.227 21.972 1.00 37.71 O HETATM 4232 O HOH B 216 37.235 -25.250 -13.765 1.00 60.76 O HETATM 4233 O HOH B 217 34.395 -47.185 -17.322 1.00 59.43 O HETATM 4234 O HOH B 218 38.024 -44.651 9.163 1.00 50.48 O HETATM 4235 O HOH G 101 36.647 -39.299 10.265 1.00 38.87 O CONECT 50 3662 CONECT 200 4152 CONECT 348 2211 CONECT 448 533 CONECT 533 448 CONECT 722 1084 CONECT 1084 722 CONECT 1341 4138 CONECT 2211 348 CONECT 2241 2420 CONECT 2297 4124 CONECT 2420 2241 CONECT 3662 50 CONECT 3730 3761 CONECT 3761 3730 CONECT 3989 3990 3993 4113 CONECT 3990 3989 3991 3994 CONECT 3991 3990 3992 CONECT 3992 3991 3993 CONECT 3993 3989 3992 CONECT 3994 3990 3995 3996 CONECT 3995 3994 CONECT 3996 3994 CONECT 4113 3989 CONECT 4124 2297 4125 4135 CONECT 4125 4124 4126 4132 CONECT 4126 4125 4127 4133 CONECT 4127 4126 4128 4134 CONECT 4128 4127 4129 4135 CONECT 4129 4128 4136 CONECT 4130 4131 4132 4137 CONECT 4131 4130 CONECT 4132 4125 4130 CONECT 4133 4126 CONECT 4134 4127 CONECT 4135 4124 4128 CONECT 4136 4129 CONECT 4137 4130 CONECT 4138 1341 4139 4149 CONECT 4139 4138 4140 4146 CONECT 4140 4139 4141 4147 CONECT 4141 4140 4142 4148 CONECT 4142 4141 4143 4149 CONECT 4143 4142 4150 CONECT 4144 4145 4146 4151 CONECT 4145 4144 CONECT 4146 4139 4144 CONECT 4147 4140 CONECT 4148 4141 CONECT 4149 4138 4142 CONECT 4150 4143 CONECT 4151 4144 CONECT 4152 200 4153 4163 CONECT 4153 4152 4154 4160 CONECT 4154 4153 4155 4161 CONECT 4155 4154 4156 4162 CONECT 4156 4155 4157 4163 CONECT 4157 4156 4164 CONECT 4158 4159 4160 4165 CONECT 4159 4158 CONECT 4160 4153 4158 CONECT 4161 4154 CONECT 4162 4155 CONECT 4163 4152 4156 CONECT 4164 4157 CONECT 4165 4158 MASTER 270 0 4 10 36 0 0 6 4232 3 66 42 END