data_9PIS # _entry.id 9PIS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9PIS pdb_00009pis 10.2210/pdb9pis/pdb WWPDB D_1000297923 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-02-25 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9PIS _pdbx_database_status.recvd_initial_deposition_date 2025-07-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'X-ray strucrture of crambin from same source' _pdbx_database_related.db_id 9Z6F _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email mmartyno@buffalo.edu _pdbx_contact_author.name_first Michael _pdbx_contact_author.name_last Martynowycz _pdbx_contact_author.name_mi W _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0055-230X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Vasireddy, P.C.R.' 1 0000-0002-7623-0297 'Low-Beer, T.' 2 0000-0002-7372-1605 'Spoth, K.A.' 3 0000-0003-1168-5829 'Acehan, D.' 4 0009-0005-7840-4667 'Crawley, M.R.' 5 0000-0002-2555-9543 'Martynowycz, M.W.' 6 0000-0003-0055-230X # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Nat Commun' ? ? 2041-1723 ? ? ? ? ? ? 'Direct from the seed: an atomic resolution protein structure by ab initio MicroED.' 2026 ? 10.1038/s41467-026-69601-y 41690942 ? ? ? ? ? ? ? ? ? ? ? ? 1 'To Be Published' ? 0353 ? ? ? ? ? ? ? 'Direct from the Seed: An Atomic-Resolution Protein Structure by Ab Initio MicroED' ? ? 10.1101/2025.07.03.663097 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vasireddy, P.C.R.' 1 0000-0002-7623-0297 primary 'Low-Beer, T.' 2 0000-0002-7372-1605 primary 'Spoth, K.A.' 3 0000-0003-1168-5829 primary 'Acehan, D.' 4 ? primary 'Crawley, M.R.' 5 ? primary 'Martynowycz, M.W.' 6 0000-0003-0055-230X 1 'Vasireddy, P.C.R.' 7 0000-0002-7623-0297 1 'Low-Beer, T.' 8 0000-0002-7372-1605 1 'Spoth, K.A.' 9 0000-0003-1168-5829 1 'Acehan, D.' 10 0009-0005-7840-4667 1 'Crawley, M.R.' 11 0000-0002-2555-9543 1 'Martynowycz, M.W.' 12 0000-0003-0055-230X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Crambin 4728.410 1 ? ? ? ? 2 water nat water 18.015 71 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code TTCCPSIVARSNFNVCRLPGTSEAICATYTGCIIIPGATCPGDYAN _entity_poly.pdbx_seq_one_letter_code_can TTCCPSIVARSNFNVCRLPGTSEAICATYTGCIIIPGATCPGDYAN _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 THR n 1 3 CYS n 1 4 CYS n 1 5 PRO n 1 6 SER n 1 7 ILE n 1 8 VAL n 1 9 ALA n 1 10 ARG n 1 11 SER n 1 12 ASN n 1 13 PHE n 1 14 ASN n 1 15 VAL n 1 16 CYS n 1 17 ARG n 1 18 LEU n 1 19 PRO n 1 20 GLY n 1 21 THR n 1 22 SER n 1 23 GLU n 1 24 ALA n 1 25 ILE n 1 26 CYS n 1 27 ALA n 1 28 THR n 1 29 TYR n 1 30 THR n 1 31 GLY n 1 32 CYS n 1 33 ILE n 1 34 ILE n 1 35 ILE n 1 36 PRO n 1 37 GLY n 1 38 ALA n 1 39 THR n 1 40 CYS n 1 41 PRO n 1 42 GLY n 1 43 ASP n 1 44 TYR n 1 45 ALA n 1 46 ASN n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 46 _entity_src_nat.common_name 'Abyssinian crambe' _entity_src_nat.pdbx_organism_scientific 'Crambe hispanica subsp. abyssinica' _entity_src_nat.pdbx_ncbi_taxonomy_id 3721 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain Meyer _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 CYS 32 32 32 CYS CYS A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 CYS 40 40 40 CYS CYS A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 ASN 46 46 46 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 72 HOH HOH A . B 2 HOH 2 102 68 HOH HOH A . B 2 HOH 3 103 73 HOH HOH A . B 2 HOH 4 104 57 HOH HOH A . B 2 HOH 5 105 65 HOH HOH A . B 2 HOH 6 106 1063 HOH HOH A . B 2 HOH 7 107 134 HOH HOH A . B 2 HOH 8 108 49 HOH HOH A . B 2 HOH 9 109 1043 HOH HOH A . B 2 HOH 10 110 37 HOH HOH A . B 2 HOH 11 111 910 HOH HOH A . B 2 HOH 12 112 62 HOH HOH A . B 2 HOH 13 113 997 HOH HOH A . B 2 HOH 14 114 1045 HOH HOH A . B 2 HOH 15 115 46 HOH HOH A . B 2 HOH 16 116 69 HOH HOH A . B 2 HOH 17 117 102 HOH HOH A . B 2 HOH 18 118 43 HOH HOH A . B 2 HOH 19 119 40 HOH HOH A . B 2 HOH 20 120 70 HOH HOH A . B 2 HOH 21 121 47 HOH HOH A . B 2 HOH 22 122 63 HOH HOH A . B 2 HOH 23 123 61 HOH HOH A . B 2 HOH 24 124 986 HOH HOH A . B 2 HOH 25 125 38 HOH HOH A . B 2 HOH 26 126 1042 HOH HOH A . B 2 HOH 27 127 55 HOH HOH A . B 2 HOH 28 128 44 HOH HOH A . B 2 HOH 29 129 60 HOH HOH A . B 2 HOH 30 130 58 HOH HOH A . B 2 HOH 31 131 1054 HOH HOH A . B 2 HOH 32 132 1048 HOH HOH A . B 2 HOH 33 133 1040 HOH HOH A . B 2 HOH 34 134 940 HOH HOH A . B 2 HOH 35 135 56 HOH HOH A . B 2 HOH 36 136 39 HOH HOH A . B 2 HOH 37 137 48 HOH HOH A . B 2 HOH 38 138 41 HOH HOH A . B 2 HOH 39 139 1050 HOH HOH A . B 2 HOH 40 140 963 HOH HOH A . B 2 HOH 41 141 53 HOH HOH A . B 2 HOH 42 142 1055 HOH HOH A . B 2 HOH 43 143 42 HOH HOH A . B 2 HOH 44 144 59 HOH HOH A . B 2 HOH 45 145 1056 HOH HOH A . B 2 HOH 46 146 45 HOH HOH A . B 2 HOH 47 147 1052 HOH HOH A . B 2 HOH 48 148 71 HOH HOH A . B 2 HOH 49 149 74 HOH HOH A . B 2 HOH 50 150 52 HOH HOH A . B 2 HOH 51 151 1053 HOH HOH A . B 2 HOH 52 152 1041 HOH HOH A . B 2 HOH 53 153 66 HOH HOH A . B 2 HOH 54 154 64 HOH HOH A . B 2 HOH 55 155 1047 HOH HOH A . B 2 HOH 56 156 54 HOH HOH A . B 2 HOH 57 157 160 HOH HOH A . B 2 HOH 58 158 1046 HOH HOH A . B 2 HOH 59 159 1057 HOH HOH A . B 2 HOH 60 160 1039 HOH HOH A . B 2 HOH 61 161 1060 HOH HOH A . B 2 HOH 62 162 912 HOH HOH A . B 2 HOH 63 163 67 HOH HOH A . B 2 HOH 64 164 1049 HOH HOH A . B 2 HOH 65 165 1059 HOH HOH A . B 2 HOH 66 166 1083 HOH HOH A . B 2 HOH 67 167 50 HOH HOH A . B 2 HOH 68 168 51 HOH HOH A . B 2 HOH 69 169 75 HOH HOH A . B 2 HOH 70 170 1074 HOH HOH A . B 2 HOH 71 171 1058 HOH HOH A . # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.835 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9PIS _cell.details ? _cell.formula_units_Z ? _cell.length_a 41.490 _cell.length_a_esd ? _cell.length_b 18.790 _cell.length_b_esd ? _cell.length_c 22.520 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9PIS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9PIS _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _refine.aniso_B[1][1] -0.600 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 2.300 _refine.aniso_B[2][2] 1.412 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] -0.813 _refine.B_iso_max ? _refine.B_iso_mean 4.580 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.970 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9PIS _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.850 _refine.ls_d_res_low 22.518 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 22251 _refine.ls_number_reflns_R_free 1143 _refine.ls_number_reflns_R_work 21108 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 71.965 _refine.ls_percent_reflns_R_free 5.137 _refine.ls_R_factor_all 0.156 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.1641 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1554 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free 0.145 _refine.ls_wR_factor_R_work 0.136 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details 'random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.005 _refine.pdbx_overall_ESU_R_Free 0.005 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.409 _refine.overall_SU_ML 0.011 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work 0.9868 _refine.pdbx_average_fsc_free 0.9840 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.017 0.012 379 ? r_bond_refined_d ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.000 0.016 343 ? r_bond_other_d ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.653 1.752 531 ? r_angle_refined_deg ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.698 1.684 798 ? r_angle_other_deg ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 5.806 5.000 56 ? r_dihedral_angle_1_deg ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 6.758 5.000 2 ? r_dihedral_angle_2_deg ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 10.292 10.000 51 ? r_dihedral_angle_3_deg ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 19.080 10.000 12 ? r_dihedral_angle_6_deg ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.083 0.200 65 ? r_chiral_restr ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.009 0.020 460 ? r_gen_planes_refined ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.002 0.020 84 ? r_gen_planes_other ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.242 0.200 67 ? r_nbd_refined ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.180 0.200 268 ? r_symmetry_nbd_other ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.159 0.200 180 ? r_nbtor_refined ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.072 0.200 156 ? r_symmetry_nbtor_other ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.288 0.200 29 ? r_xyhbond_nbd_refined ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.239 0.200 3 ? r_symmetry_nbd_refined ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.178 0.200 29 ? r_nbd_other ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.209 0.200 9 ? r_symmetry_xyhbond_nbd_refined ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.041 0.432 203 ? r_mcbond_it ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.024 0.433 202 ? r_mcbond_other ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.572 0.788 257 ? r_mcangle_it ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.569 0.787 258 ? r_mcangle_other ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.311 0.479 176 ? r_scbond_it ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.307 0.479 177 ? r_scbond_other ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.029 0.876 271 ? r_scangle_it ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.025 0.875 272 ? r_scangle_other ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 6.814 5.814 428 ? r_lrange_it ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 4.511 4.313 404 ? r_lrange_other ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 2.953 3.000 722 ? r_rigid_bond_restr ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'ELECTRON CRYSTALLOGRAPHY' 0.850 0.872 . . 12 235 10.8859 . . . . 0.444 . . . . . . . . . . . . . . . 0.338 'ELECTRON CRYSTALLOGRAPHY' 0.872 0.896 . . 38 729 34.3792 . . . . 0.353 . . . . . . . . . . . . . . . 0.380 'ELECTRON CRYSTALLOGRAPHY' 0.896 0.922 . . 71 1048 52.6093 . . . . 0.313 . . . . . . . . . . . . . . . 0.386 'ELECTRON CRYSTALLOGRAPHY' 0.922 0.951 . . 67 1250 63.1049 . . . . 0.260 . . . . . . . . . . . . . . . 0.283 'ELECTRON CRYSTALLOGRAPHY' 0.951 0.982 . . 53 1314 67.8749 . . . . 0.199 . . . . . . . . . . . . . . . 0.224 'ELECTRON CRYSTALLOGRAPHY' 0.982 1.016 . . 73 1337 71.6828 . . . . 0.186 . . . . . . . . . . . . . . . 0.205 'ELECTRON CRYSTALLOGRAPHY' 1.016 1.055 . . 82 1304 73.6842 . . . . 0.165 . . . . . . . . . . . . . . . 0.193 'ELECTRON CRYSTALLOGRAPHY' 1.055 1.098 . . 88 1349 78.2680 . . . . 0.150 . . . . . . . . . . . . . . . 0.174 'ELECTRON CRYSTALLOGRAPHY' 1.098 1.146 . . 53 1310 78.0195 . . . . 0.130 . . . . . . . . . . . . . . . 0.178 'ELECTRON CRYSTALLOGRAPHY' 1.146 1.202 . . 88 1249 80.3486 . . . . 0.140 . . . . . . . . . . . . . . . 0.120 'ELECTRON CRYSTALLOGRAPHY' 1.202 1.267 . . 70 1296 84.3210 . . . . 0.148 . . . . . . . . . . . . . . . 0.183 'ELECTRON CRYSTALLOGRAPHY' 1.267 1.344 . . 59 1290 88.6917 . . . . 0.157 . . . . . . . . . . . . . . . 0.168 'ELECTRON CRYSTALLOGRAPHY' 1.344 1.437 . . 60 1258 93.8078 . . . . 0.160 . . . . . . . . . . . . . . . 0.179 'ELECTRON CRYSTALLOGRAPHY' 1.437 1.552 . . 53 1247 98.1132 . . . . 0.159 . . . . . . . . . . . . . . . 0.181 'ELECTRON CRYSTALLOGRAPHY' 1.552 1.700 . . 62 1155 99.1850 . . . . 0.151 . . . . . . . . . . . . . . . 0.198 'ELECTRON CRYSTALLOGRAPHY' 1.700 1.900 . . 65 1042 98.3126 . . . . 0.144 . . . . . . . . . . . . . . . 0.145 'ELECTRON CRYSTALLOGRAPHY' 1.900 2.193 . . 56 922 100.4107 . . . . 0.129 . . . . . . . . . . . . . . . 0.115 'ELECTRON CRYSTALLOGRAPHY' 2.193 2.684 . . 48 793 98.7089 . . . . 0.132 . . . . . . . . . . . . . . . 0.131 'ELECTRON CRYSTALLOGRAPHY' 2.684 3.788 . . 32 619 98.1900 . . . . 0.131 . . . . . . . . . . . . . . . 0.124 'ELECTRON CRYSTALLOGRAPHY' 3.788 22.518 . . 13 361 97.6501 . . . . 0.188 . . . . . . . . . . . . . . . 0.187 # _struct.entry_id 9PIS _struct.title 'Ab initio structure of crambin by MicroED at 0.85A' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9PIS _struct_keywords.text 'Seed protein, PLANT PROTEIN' _struct_keywords.pdbx_keywords 'PLANT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CRAM_CRAAB _struct_ref.pdbx_db_accession P01542 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code TTCCPSIVARSNFNVCRLPGTPEALCATYTGCIIIPGATCPGDYAN _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9PIS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 46 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P01542 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 46 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 46 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9PIS SER A 22 ? UNP P01542 PRO 22 variant 22 1 1 9PIS ILE A 25 ? UNP P01542 LEU 25 variant 25 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 6 ? LEU A 18 ? SER A 6 LEU A 18 1 ? 13 HELX_P HELX_P2 AA2 SER A 22 ? GLY A 31 ? SER A 22 GLY A 31 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 40 SG ? ? A CYS 3 A CYS 40 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf2 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 32 SG ? ? A CYS 4 A CYS 32 1_555 ? ? ? ? ? ? ? 2.110 ? ? disulf3 disulf ? ? A CYS 16 SG ? ? ? 1_555 A CYS 26 SG ? ? A CYS 16 A CYS 26 1_555 ? ? ? ? ? ? ? 2.115 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 3 ? CYS A 40 ? CYS A 3 ? 1_555 CYS A 40 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 4 ? CYS A 32 ? CYS A 4 ? 1_555 CYS A 32 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 16 ? CYS A 26 ? CYS A 16 ? 1_555 CYS A 26 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 2 ? CYS A 3 ? THR A 2 CYS A 3 AA1 2 ILE A 33 ? ILE A 34 ? ILE A 33 ILE A 34 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id CYS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 3 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id CYS _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 3 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ILE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 33 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 33 # _pdbx_entry_details.entry_id 9PIS _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9PIS _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 6 _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_reconstruction.entry_id 9PIS _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 0.85 _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type '3D CRYSTAL' # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details 'Simple mixture of ethanol and water.' _em_buffer.pH 7 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.name crambin _em_entity_assembly.details 'small plant protein' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_image_scans.entry_id 9PIS _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size 14 _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 4096 _em_image_scans.dimension_width 4096 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 9PIS _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS GLACIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 0 _em_imaging.nominal_defocus_max 0 _em_imaging.calibrated_defocus_min 0 _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum 77 _em_imaging.recording_temperature_maximum 90 _em_imaging.alignment_procedure BASIC _em_imaging.c2_aperture_diameter 20 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'EMS Lacey Carbon' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9PIS _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 95 _em_vitrification.temp ? _em_vitrification.chamber_temperature 280 _em_vitrification.instrument 'LEICA EM GP' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9PIS _em_experiment.id 1 _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.aggregation_state '3D ARRAY' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 170 ? 5.98 . 2 1 O ? A HOH 171 ? 6.54 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLU N N N N 88 GLU CA C N S 89 GLU C C N N 90 GLU O O N N 91 GLU CB C N N 92 GLU CG C N N 93 GLU CD C N N 94 GLU OE1 O N N 95 GLU OE2 O N N 96 GLU OXT O N N 97 GLU H H N N 98 GLU H2 H N N 99 GLU HA H N N 100 GLU HB2 H N N 101 GLU HB3 H N N 102 GLU HG2 H N N 103 GLU HG3 H N N 104 GLU HE2 H N N 105 GLU HXT H N N 106 GLY N N N N 107 GLY CA C N N 108 GLY C C N N 109 GLY O O N N 110 GLY OXT O N N 111 GLY H H N N 112 GLY H2 H N N 113 GLY HA2 H N N 114 GLY HA3 H N N 115 GLY HXT H N N 116 HOH O O N N 117 HOH H1 H N N 118 HOH H2 H N N 119 ILE N N N N 120 ILE CA C N S 121 ILE C C N N 122 ILE O O N N 123 ILE CB C N S 124 ILE CG1 C N N 125 ILE CG2 C N N 126 ILE CD1 C N N 127 ILE OXT O N N 128 ILE H H N N 129 ILE H2 H N N 130 ILE HA H N N 131 ILE HB H N N 132 ILE HG12 H N N 133 ILE HG13 H N N 134 ILE HG21 H N N 135 ILE HG22 H N N 136 ILE HG23 H N N 137 ILE HD11 H N N 138 ILE HD12 H N N 139 ILE HD13 H N N 140 ILE HXT H N N 141 LEU N N N N 142 LEU CA C N S 143 LEU C C N N 144 LEU O O N N 145 LEU CB C N N 146 LEU CG C N N 147 LEU CD1 C N N 148 LEU CD2 C N N 149 LEU OXT O N N 150 LEU H H N N 151 LEU H2 H N N 152 LEU HA H N N 153 LEU HB2 H N N 154 LEU HB3 H N N 155 LEU HG H N N 156 LEU HD11 H N N 157 LEU HD12 H N N 158 LEU HD13 H N N 159 LEU HD21 H N N 160 LEU HD22 H N N 161 LEU HD23 H N N 162 LEU HXT H N N 163 PHE N N N N 164 PHE CA C N S 165 PHE C C N N 166 PHE O O N N 167 PHE CB C N N 168 PHE CG C Y N 169 PHE CD1 C Y N 170 PHE CD2 C Y N 171 PHE CE1 C Y N 172 PHE CE2 C Y N 173 PHE CZ C Y N 174 PHE OXT O N N 175 PHE H H N N 176 PHE H2 H N N 177 PHE HA H N N 178 PHE HB2 H N N 179 PHE HB3 H N N 180 PHE HD1 H N N 181 PHE HD2 H N N 182 PHE HE1 H N N 183 PHE HE2 H N N 184 PHE HZ H N N 185 PHE HXT H N N 186 PRO N N N N 187 PRO CA C N S 188 PRO C C N N 189 PRO O O N N 190 PRO CB C N N 191 PRO CG C N N 192 PRO CD C N N 193 PRO OXT O N N 194 PRO H H N N 195 PRO HA H N N 196 PRO HB2 H N N 197 PRO HB3 H N N 198 PRO HG2 H N N 199 PRO HG3 H N N 200 PRO HD2 H N N 201 PRO HD3 H N N 202 PRO HXT H N N 203 SER N N N N 204 SER CA C N S 205 SER C C N N 206 SER O O N N 207 SER CB C N N 208 SER OG O N N 209 SER OXT O N N 210 SER H H N N 211 SER H2 H N N 212 SER HA H N N 213 SER HB2 H N N 214 SER HB3 H N N 215 SER HG H N N 216 SER HXT H N N 217 THR N N N N 218 THR CA C N S 219 THR C C N N 220 THR O O N N 221 THR CB C N R 222 THR OG1 O N N 223 THR CG2 C N N 224 THR OXT O N N 225 THR H H N N 226 THR H2 H N N 227 THR HA H N N 228 THR HB H N N 229 THR HG1 H N N 230 THR HG21 H N N 231 THR HG22 H N N 232 THR HG23 H N N 233 THR HXT H N N 234 TYR N N N N 235 TYR CA C N S 236 TYR C C N N 237 TYR O O N N 238 TYR CB C N N 239 TYR CG C Y N 240 TYR CD1 C Y N 241 TYR CD2 C Y N 242 TYR CE1 C Y N 243 TYR CE2 C Y N 244 TYR CZ C Y N 245 TYR OH O N N 246 TYR OXT O N N 247 TYR H H N N 248 TYR H2 H N N 249 TYR HA H N N 250 TYR HB2 H N N 251 TYR HB3 H N N 252 TYR HD1 H N N 253 TYR HD2 H N N 254 TYR HE1 H N N 255 TYR HE2 H N N 256 TYR HH H N N 257 TYR HXT H N N 258 VAL N N N N 259 VAL CA C N S 260 VAL C C N N 261 VAL O O N N 262 VAL CB C N N 263 VAL CG1 C N N 264 VAL CG2 C N N 265 VAL OXT O N N 266 VAL H H N N 267 VAL H2 H N N 268 VAL HA H N N 269 VAL HB H N N 270 VAL HG11 H N N 271 VAL HG12 H N N 272 VAL HG13 H N N 273 VAL HG21 H N N 274 VAL HG22 H N N 275 VAL HG23 H N N 276 VAL HXT H N N 277 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLU N CA sing N N 83 GLU N H sing N N 84 GLU N H2 sing N N 85 GLU CA C sing N N 86 GLU CA CB sing N N 87 GLU CA HA sing N N 88 GLU C O doub N N 89 GLU C OXT sing N N 90 GLU CB CG sing N N 91 GLU CB HB2 sing N N 92 GLU CB HB3 sing N N 93 GLU CG CD sing N N 94 GLU CG HG2 sing N N 95 GLU CG HG3 sing N N 96 GLU CD OE1 doub N N 97 GLU CD OE2 sing N N 98 GLU OE2 HE2 sing N N 99 GLU OXT HXT sing N N 100 GLY N CA sing N N 101 GLY N H sing N N 102 GLY N H2 sing N N 103 GLY CA C sing N N 104 GLY CA HA2 sing N N 105 GLY CA HA3 sing N N 106 GLY C O doub N N 107 GLY C OXT sing N N 108 GLY OXT HXT sing N N 109 HOH O H1 sing N N 110 HOH O H2 sing N N 111 ILE N CA sing N N 112 ILE N H sing N N 113 ILE N H2 sing N N 114 ILE CA C sing N N 115 ILE CA CB sing N N 116 ILE CA HA sing N N 117 ILE C O doub N N 118 ILE C OXT sing N N 119 ILE CB CG1 sing N N 120 ILE CB CG2 sing N N 121 ILE CB HB sing N N 122 ILE CG1 CD1 sing N N 123 ILE CG1 HG12 sing N N 124 ILE CG1 HG13 sing N N 125 ILE CG2 HG21 sing N N 126 ILE CG2 HG22 sing N N 127 ILE CG2 HG23 sing N N 128 ILE CD1 HD11 sing N N 129 ILE CD1 HD12 sing N N 130 ILE CD1 HD13 sing N N 131 ILE OXT HXT sing N N 132 LEU N CA sing N N 133 LEU N H sing N N 134 LEU N H2 sing N N 135 LEU CA C sing N N 136 LEU CA CB sing N N 137 LEU CA HA sing N N 138 LEU C O doub N N 139 LEU C OXT sing N N 140 LEU CB CG sing N N 141 LEU CB HB2 sing N N 142 LEU CB HB3 sing N N 143 LEU CG CD1 sing N N 144 LEU CG CD2 sing N N 145 LEU CG HG sing N N 146 LEU CD1 HD11 sing N N 147 LEU CD1 HD12 sing N N 148 LEU CD1 HD13 sing N N 149 LEU CD2 HD21 sing N N 150 LEU CD2 HD22 sing N N 151 LEU CD2 HD23 sing N N 152 LEU OXT HXT sing N N 153 PHE N CA sing N N 154 PHE N H sing N N 155 PHE N H2 sing N N 156 PHE CA C sing N N 157 PHE CA CB sing N N 158 PHE CA HA sing N N 159 PHE C O doub N N 160 PHE C OXT sing N N 161 PHE CB CG sing N N 162 PHE CB HB2 sing N N 163 PHE CB HB3 sing N N 164 PHE CG CD1 doub Y N 165 PHE CG CD2 sing Y N 166 PHE CD1 CE1 sing Y N 167 PHE CD1 HD1 sing N N 168 PHE CD2 CE2 doub Y N 169 PHE CD2 HD2 sing N N 170 PHE CE1 CZ doub Y N 171 PHE CE1 HE1 sing N N 172 PHE CE2 CZ sing Y N 173 PHE CE2 HE2 sing N N 174 PHE CZ HZ sing N N 175 PHE OXT HXT sing N N 176 PRO N CA sing N N 177 PRO N CD sing N N 178 PRO N H sing N N 179 PRO CA C sing N N 180 PRO CA CB sing N N 181 PRO CA HA sing N N 182 PRO C O doub N N 183 PRO C OXT sing N N 184 PRO CB CG sing N N 185 PRO CB HB2 sing N N 186 PRO CB HB3 sing N N 187 PRO CG CD sing N N 188 PRO CG HG2 sing N N 189 PRO CG HG3 sing N N 190 PRO CD HD2 sing N N 191 PRO CD HD3 sing N N 192 PRO OXT HXT sing N N 193 SER N CA sing N N 194 SER N H sing N N 195 SER N H2 sing N N 196 SER CA C sing N N 197 SER CA CB sing N N 198 SER CA HA sing N N 199 SER C O doub N N 200 SER C OXT sing N N 201 SER CB OG sing N N 202 SER CB HB2 sing N N 203 SER CB HB3 sing N N 204 SER OG HG sing N N 205 SER OXT HXT sing N N 206 THR N CA sing N N 207 THR N H sing N N 208 THR N H2 sing N N 209 THR CA C sing N N 210 THR CA CB sing N N 211 THR CA HA sing N N 212 THR C O doub N N 213 THR C OXT sing N N 214 THR CB OG1 sing N N 215 THR CB CG2 sing N N 216 THR CB HB sing N N 217 THR OG1 HG1 sing N N 218 THR CG2 HG21 sing N N 219 THR CG2 HG22 sing N N 220 THR CG2 HG23 sing N N 221 THR OXT HXT sing N N 222 TYR N CA sing N N 223 TYR N H sing N N 224 TYR N H2 sing N N 225 TYR CA C sing N N 226 TYR CA CB sing N N 227 TYR CA HA sing N N 228 TYR C O doub N N 229 TYR C OXT sing N N 230 TYR CB CG sing N N 231 TYR CB HB2 sing N N 232 TYR CB HB3 sing N N 233 TYR CG CD1 doub Y N 234 TYR CG CD2 sing Y N 235 TYR CD1 CE1 sing Y N 236 TYR CD1 HD1 sing N N 237 TYR CD2 CE2 doub Y N 238 TYR CD2 HD2 sing N N 239 TYR CE1 CZ doub Y N 240 TYR CE1 HE1 sing N N 241 TYR CE2 CZ sing Y N 242 TYR CE2 HE2 sing N N 243 TYR CZ OH sing N N 244 TYR OH HH sing N N 245 TYR OXT HXT sing N N 246 VAL N CA sing N N 247 VAL N H sing N N 248 VAL N H2 sing N N 249 VAL CA C sing N N 250 VAL CA CB sing N N 251 VAL CA HA sing N N 252 VAL C O doub N N 253 VAL C OXT sing N N 254 VAL CB CG1 sing N N 255 VAL CB CG2 sing N N 256 VAL CB HB sing N N 257 VAL CG1 HG11 sing N N 258 VAL CG1 HG12 sing N N 259 VAL CG1 HG13 sing N N 260 VAL CG2 HG21 sing N N 261 VAL CG2 HG22 sing N N 262 VAL CG2 HG23 sing N N 263 VAL OXT HXT sing N N 264 # _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 90.84 _em_3d_crystal_entity.angle_gamma 90 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.length_a 41.490 _em_3d_crystal_entity.length_b 18.790 _em_3d_crystal_entity.length_c 22.520 _em_3d_crystal_entity.space_group_name 4 _em_3d_crystal_entity.space_group_num 4 # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 70 % H20 1 Water 1 30 % C2H6O 2 Ethanol # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 8 _em_diffraction_shell.high_resolution 0.850 _em_diffraction_shell.id 1 _em_diffraction_shell.low_resolution 0.872 _em_diffraction_shell.multiplicity 2.5 _em_diffraction_shell.num_structure_factors 180 _em_diffraction_shell.phase_residual 46.05 # _em_diffraction_stats.details ? _em_diffraction_stats.fourier_space_coverage 71 _em_diffraction_stats.high_resolution 0.85 _em_diffraction_stats.id 1 _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.num_intensities_measured 1170220 _em_diffraction_stats.num_structure_factors 22025 _em_diffraction_stats.overall_phase_error ? _em_diffraction_stats.overall_phase_residual ? _em_diffraction_stats.phase_error_rejection_criteria none _em_diffraction_stats.r_merge 26 _em_diffraction_stats.r_sym 4 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.0045 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 3721 _em_entity_assembly_naturalsource.organism 'Crambe hispanica subsp. abyssinica' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain Meyer _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 0.2 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 0.01 _em_image_recording.details 'Continuous rotation over 60s with 0.1-0.2 degrees per image.' _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images 300 _em_image_recording.num_grids_imaged 3 _em_image_recording.num_real_images 300 # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'IMAGE ACQUISITION' ? 1 ? ? 1 SerialEM ? ? MASKING ? 2 ? ? ? ? ? ? 'CTF CORRECTION' ? 3 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 4 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 5 ? ? ? ? ? ? 'MODEL FITTING' ? 6 ? 1 ? Coot ? ? OTHER ? 7 ? ? ? ? ? ? 'MOLECULAR REPLACEMENT' ? 8 1 ? ? ? ? ? 'LATTICE DISTORTION CORRECTION' ? 9 1 ? ? ? ? ? 'SYMMETRY DETERMINATION' ? 10 1 ? ? ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 11 1 ? ? ? ? ? RECONSTRUCTION ? 12 1 ? ? Buccaneer ? ? 'MODEL REFINEMENT' ? 13 ? 1 ? REFMAC ? ? # _em_specimen.concentration 1 _em_specimen.details 'Nanocrystals precipitated in ethanol.' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' ? 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' ? 2 # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.operator _pdbx_reflns_twin.fraction _pdbx_reflns_twin.type _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id 1 'H, K, L' 0.8978 pseudo-merohedral 1 1 2 -h,-k,l 0.1022 pseudo-merohedral 2 2 # loop_ _pdbx_related_exp_data_set.ordinal _pdbx_related_exp_data_set.data_reference _pdbx_related_exp_data_set.metadata_reference _pdbx_related_exp_data_set.data_set_type _pdbx_related_exp_data_set.details 1 10.5281/zenodo.15849324 ? 'diffraction image data' ? 2 10.5281/zenodo.15858191 ? 'diffraction image data' ? 3 10.5281/zenodo.17604193 ? 'other data' ? # _atom_sites.entry_id 9PIS _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.024102 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000351 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.053220 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.044410 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 0.2156 H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 0.0030 N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 -11.5379 O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 0.2508 S 16 16 6.9054 1.4679 5.2035 22.2151 1.4379 0.2536 1.5863 56.1720 0.8669 # loop_ # loop_ #