HEADER LYASE 14-JUL-25 9PKJ TITLE PHENYLALANINE AMMONIA-LYASE MUTANT (S112I-F140H) FROM JOINVILLEA TITLE 2 ASCENDENS CAVEAT 9PKJ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANINE AMMONIA-LYASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.3.1.24; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JOINVILLEA ASCENDENS; SOURCE 3 ORGANISM_TAXID: 38723; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APOENZYME, PHENYLALANINE AMMONIA-LYASE, PHENYLPROPANOID BIOSYNTHESIS, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.S.MORRIS,J.M.JEZ REVDAT 2 02-SEP-26 9PKJ 1 JRNL REVDAT 1 19-AUG-26 9PKJ 0 JRNL AUTH Y.TAKEDA-KIMURA,B.MOORE,S.HOLDEN,J.S.MORRIS,S.K.DEB, JRNL AUTH 2 C.SANDERS,J.EL-AZAZ,M.BARRETT,D.LORENCE,M.V.V.DE OLIVEIRA, JRNL AUTH 3 W.HAVRANEK,J.GRIMWOOD,M.WILLIAMS,L.B.BOSTON,J.JENKINS, JRNL AUTH 4 C.PLOTT,S.SHU,K.BARRY,D.M.GOODSTEIN,J.SCHMUTZ,J.M.JEZ, JRNL AUTH 5 M.J.MOSCOU,M.R.MCKAIN,J.H.LEEBENS-MACK,H.A.MAEDA JRNL TITL GENOMES OF POACEAE RELATIVES REVEAL KEY METABOLIC JRNL TITL 2 INNOVATIONS PRECEDING THE EVOLUTION OF GRASSES. JRNL REF SCIENCE V. 393 V0443 2026 JRNL REFN ESSN 1095-9203 JRNL PMID 42623474 JRNL DOI 10.1126/SCIENCE.ADV0443 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472: ??? REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 30367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.0400 - 2.9500 0.97 2528 133 0.3010 0.3730 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4234 77.0855 0.7851 REMARK 3 T TENSOR REMARK 3 T11: 0.7416 T22: 0.9035 REMARK 3 T33: 0.9537 T12: -0.0179 REMARK 3 T13: 0.0494 T23: 0.3635 REMARK 3 L TENSOR REMARK 3 L11: 1.3352 L22: 0.6726 REMARK 3 L33: 0.2395 L12: -0.2454 REMARK 3 L13: 0.0495 L23: 0.2225 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: -0.5148 S13: -0.571 REMARK 3 S21: 0.2206 S22: 0.176 S23: 0.5934 REMARK 3 S31: 0.0249 S32: -0.3186 S33: -0.0049 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 359 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.4999 75.4857 4.1452 REMARK 3 T TENSOR REMARK 3 T11: 0.7972 T22: 1.1319 REMARK 3 T33: 0.7262 T12: 0.0822 REMARK 3 T13: -0.0537 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.8494 L22: 2.6536 REMARK 3 L33: 0.8348 L12: -0.8576 REMARK 3 L13: 0.7645 L23: -0.2565 REMARK 3 S TENSOR REMARK 3 S11: -0.2287 S12: -0.5688 S13: 0.1136 REMARK 3 S21: 0.1575 S22: 0.5579 S23: -0.1909 REMARK 3 S31: 0.0355 S32: 0.2315 S33: -0.2059 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 360 THROUGH 719 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.4469 66.5598 -7.3366 REMARK 3 T TENSOR REMARK 3 T11: 0.7277 T22: 0.6293 REMARK 3 T33: 0.6394 T12: -0.08 REMARK 3 T13: -0.069 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 1.7233 L22: 1.0317 REMARK 3 L33: 0.2179 L12: -0.9221 REMARK 3 L13: 0.1781 L23: -0.0176 REMARK 3 S TENSOR REMARK 3 S11: 0.0249 S12: -0.2542 S13: -0.4315 REMARK 3 S21: -0.0013 S22: 0.1474 S23: 0.1926 REMARK 3 S31: 0.1638 S32: 0.0114 S33: -0.1463 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9PKJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1000297899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32405 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 105.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 20.20 REMARK 200 R MERGE FOR SHELL (I) : 1.38600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.03M SODIUM NITRATE, 0.03M SODIUM REMARK 280 PHOSPHATE DIBASIC, 0.03M AMMONIUM SULFATE, 0.05M NA HEPES, 0.05M REMARK 280 MOPS, 20% ETHYLENE GLYCOL, 10% PEG 8000, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.69733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.84867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.69733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.84867 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.69733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 36.84867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 73.69733 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.84867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 104.95900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 181.79400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.500000 -0.866000 0.000000 104.95900 REMARK 350 BIOMT2 3 -0.866000 -0.500000 0.000000 181.79400 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -36.84900 REMARK 350 BIOMT1 4 -0.500000 0.866000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866000 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -36.84900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 CYS A 3 REMARK 465 GLU A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 ASN A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 VAL A 14 REMARK 465 ASN A 15 REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 ASN A 18 REMARK 465 GLY A 19 REMARK 465 LEU A 20 REMARK 465 CYS A 21 REMARK 465 LEU A 22 REMARK 465 GLN A 23 REMARK 465 LYS A 24 REMARK 465 PRO A 25 REMARK 465 GLN A 26 REMARK 465 ASN A 108 REMARK 465 GLY A 109 REMARK 465 THR A 110 REMARK 465 ASP A 111 REMARK 465 ILE A 112 REMARK 465 TYR A 113 REMARK 465 GLY A 114 REMARK 465 VAL A 115 REMARK 465 THR A 116 REMARK 465 THR A 117 REMARK 465 GLY A 118 REMARK 465 PHE A 119 REMARK 465 GLY A 120 REMARK 465 ALA A 121 REMARK 465 THR A 122 REMARK 465 SER A 123 REMARK 465 HIS A 124 REMARK 465 ARG A 125 REMARK 465 ARG A 126 REMARK 465 THR A 127 REMARK 465 LYS A 128 REMARK 465 GLU A 129 REMARK 465 MET A 348 REMARK 465 LYS A 349 REMARK 465 CYS A 720 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 478 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 204 C THR A 205 N 0.165 REMARK 500 ASP A 209 C LEU A 210 N 0.157 REMARK 500 PRO A 212 C LEU A 213 N 0.162 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 357 CA - CB - CG ANGL. DEV. = 19.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 69.36 -118.51 REMARK 500 SER A 66 -5.59 83.41 REMARK 500 ALA A 77 -6.37 -143.88 REMARK 500 GLU A 79 -82.35 -112.53 REMARK 500 SER A 150 11.82 -140.88 REMARK 500 ASP A 237 171.21 -59.24 REMARK 500 LYS A 257 -53.31 74.89 REMARK 500 ASP A 345 103.73 -170.31 REMARK 500 LEU A 497 19.63 59.72 REMARK 500 LYS A 681 -160.22 -102.03 REMARK 500 LEU A 682 37.19 -153.96 REMARK 500 GLN A 698 0.78 -70.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 139 0.18 SIDE CHAIN REMARK 500 ARG A 451 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9PKJ A -20 720 PDB 9PKJ 9PKJ -20 720 SEQRES 1 A 739 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 739 LEU VAL PRO ARG GLY SER HIS MET MET GLU CYS GLU ASN SEQRES 3 A 739 GLY ASN VAL ALA ALA VAL ALA ALA VAL ASN GLY GLY ASN SEQRES 4 A 739 GLY LEU CYS LEU GLN LYS PRO GLN HIS ALA ASP PRO LEU SEQRES 5 A 739 ASN TRP GLY LYS ALA ALA GLY GLU LEU MET GLY SER HIS SEQRES 6 A 739 LEU GLU GLU VAL LYS ARG MET VAL ALA GLU PHE ARG ALA SEQRES 7 A 739 PRO VAL VAL LYS ILE GLU GLY ALA SER LEU ARG ILE ALA SEQRES 8 A 739 GLN VAL ALA ALA VAL ALA ALA GLY GLU ALA ALA ALA ALA SEQRES 9 A 739 LYS VAL GLU LEU ASP GLU SER SER ARG GLY ARG VAL LYS SEQRES 10 A 739 ALA SER SER ASP TRP VAL MET SER SER MET MET ASN GLY SEQRES 11 A 739 THR ASP ILE TYR GLY VAL THR THR GLY PHE GLY ALA THR SEQRES 12 A 739 SER HIS ARG ARG THR LYS GLU GLY GLY ALA LEU GLN ARG SEQRES 13 A 739 GLU LEU ILE ARG HIS LEU ASN ALA GLY VAL PHE GLY THR SEQRES 14 A 739 GLY SER ASP GLY HIS VAL LEU PRO ALA ALA ALA THR ARG SEQRES 15 A 739 ALA ALA MET LEU VAL ARG ILE ASN THR LEU LEU GLN GLY SEQRES 16 A 739 TYR SER GLY ILE ARG PHE GLU ILE LEU GLU ALA ILE THR SEQRES 17 A 739 ALA LEU LEU ASN ALA GLY VAL THR PRO CYS LEU PRO LEU SEQRES 18 A 739 ARG GLY THR ILE THR MDO ASP LEU VAL PRO LEU SER TYR SEQRES 19 A 739 ILE ALA GLY LEU ILE THR GLY ARG PRO ASN SER VAL ALA SEQRES 20 A 739 VAL ALA PRO ASP GLY ARG LYS VAL ASP ALA ALA GLU ALA SEQRES 21 A 739 PHE LYS ILE ALA GLY ILE GLN HIS GLY PHE PHE GLU LEU SEQRES 22 A 739 GLN PRO LYS GLU GLY LEU ALA MET VAL ASN GLY THR ALA SEQRES 23 A 739 VAL GLY SER GLY LEU ALA SER THR VAL LEU PHE GLU ALA SEQRES 24 A 739 ASN ILE LEU THR ILE LEU ALA GLU VAL LEU SER ALA VAL SEQRES 25 A 739 PHE CYS GLU VAL MET THR GLY LYS PRO GLU TYR THR ASP SEQRES 26 A 739 HIS LEU THR HIS LYS LEU LYS HIS HIS PRO GLY GLN ILE SEQRES 27 A 739 GLU ALA ALA ALA ILE MET GLU HIS ILE LEU GLU GLY SER SEQRES 28 A 739 SER TYR MET LYS LEU ALA LYS LYS LEU GLY ASP LEU ASP SEQRES 29 A 739 PRO LEU MET LYS PRO LYS GLN ASP ARG TYR ALA LEU ARG SEQRES 30 A 739 THR SER PRO GLN TRP LEU GLY PRO GLN ILE GLU VAL ILE SEQRES 31 A 739 ARG ALA SER THR LYS SER ILE GLU ARG GLU ILE ASN SER SEQRES 32 A 739 VAL ASN ASP ASN PRO LEU ILE ASP VAL SER ARG GLY LYS SEQRES 33 A 739 ALA LEU HIS GLY GLY ASN PHE GLN GLY THR PRO ILE GLY SEQRES 34 A 739 VAL SER MET ASP ASN THR ARG LEU ALA ILE ALA ALA ILE SEQRES 35 A 739 GLY LYS LEU MET PHE ALA GLN PHE SER GLU LEU VAL ASN SEQRES 36 A 739 ASP PHE TYR ASN ASN GLY LEU PRO SER ASN LEU SER GLY SEQRES 37 A 739 GLY ARG ASN PRO SER LEU ASP TYR GLY PHE LYS GLY ALA SEQRES 38 A 739 GLU ILE ALA MET ALA SER TYR CYS SER GLU LEU GLN PHE SEQRES 39 A 739 LEU ALA ASN PRO VAL THR ASN HIS VAL GLN SER ALA GLU SEQRES 40 A 739 GLN HIS ASN GLN ASP VAL ASN SER LEU GLY LEU ILE SER SEQRES 41 A 739 SER ARG LYS THR ALA GLU ALA VAL ASP ILE LEU LYS LEU SEQRES 42 A 739 MET SER SER THR PHE LEU ILE ALA LEU CYS GLN ALA ILE SEQRES 43 A 739 ASP LEU ARG HIS LEU GLU GLU ASN LEU LYS SER ALA VAL SEQRES 44 A 739 LYS ASN CYS VAL ALA GLN VAL ALA LYS LYS ALA LEU THR SEQRES 45 A 739 LEU ASN THR VAL GLY ASP LEU HIS ASN ALA ARG PHE SER SEQRES 46 A 739 GLU LYS ASP LEU LEU THR ALA ILE ASP ARG GLU ALA LEU SEQRES 47 A 739 PHE ALA TYR ALA ASP ASP PRO CYS ASN PRO ASN TYR PRO SEQRES 48 A 739 LEU MET GLN LYS LEU ARG ALA VAL LEU VAL GLU HIS ALA SEQRES 49 A 739 LEU ALA ASN GLY GLU ALA GLU HIS VAL ALA THR THR SER SEQRES 50 A 739 VAL PHE ALA LYS ILE THR LYS PHE GLU GLU GLU LEU ARG SEQRES 51 A 739 ALA THR LEU PRO LYS GLU VAL GLU ALA ALA ARG VAL ALA SEQRES 52 A 739 VAL GLU ASN GLY THR ALA PRO THR PRO ASN ARG ILE LYS SEQRES 53 A 739 GLU CYS ARG SER TYR PRO LEU TYR ARG PHE VAL ARG GLU SEQRES 54 A 739 GLU LEU GLY THR GLU TYR LEU THR GLY GLU LYS LEU ARG SEQRES 55 A 739 SER PRO GLY GLU GLU CYS ASN LYS VAL PHE VAL ALA ILE SEQRES 56 A 739 ASN GLN GLY LYS LEU ILE ASP PRO LEU LEU GLU CYS LEU SEQRES 57 A 739 LYS GLU TRP ASN GLY GLU PRO LEU PRO ILE CYS HET MDO A 206 13 HETNAM MDO {2-[(1S)-1-AMINOETHYL]-4-METHYLIDENE-5-OXO-4,5-DIHYDRO- HETNAM 2 MDO 1H-IMIDAZOL-1-YL}ACETIC ACID HETSYN MDO 4-METHYLIDENE-5-ONE; PEPTIDE DERIVED CHROMOPHORE FORMUL 1 MDO C8 H11 N3 O3 HELIX 1 AA1 ASN A 32 GLU A 39 1 8 HELIX 2 AA2 SER A 43 ALA A 57 1 15 HELIX 3 AA3 ARG A 68 ALA A 77 1 10 HELIX 4 AA4 SER A 91 MET A 106 1 16 HELIX 5 AA5 GLY A 131 LEU A 141 1 11 HELIX 6 AA6 PRO A 156 THR A 170 1 15 HELIX 7 AA7 ARG A 179 GLY A 193 1 15 HELIX 8 AA8 LEU A 210 GLY A 222 1 13 HELIX 9 AA9 ALA A 238 ALA A 245 1 8 HELIX 10 AB1 LYS A 257 ASN A 264 1 8 HELIX 11 AB2 THR A 266 THR A 299 1 34 HELIX 12 AB3 LYS A 301 THR A 305 5 5 HELIX 13 AB4 ASP A 306 LEU A 312 1 7 HELIX 14 AB5 HIS A 315 GLY A 331 1 17 HELIX 15 AB6 SER A 332 LEU A 344 1 13 HELIX 16 AB7 ARG A 354 THR A 359 1 6 HELIX 17 AB8 THR A 359 ILE A 382 1 24 HELIX 18 AB9 GLY A 406 ASN A 436 1 31 HELIX 19 AC1 PRO A 444 SER A 448 5 5 HELIX 20 AC2 ASN A 452 ASP A 456 5 5 HELIX 21 AC3 PHE A 459 ALA A 477 1 19 HELIX 22 AC4 VAL A 480 VAL A 484 5 5 HELIX 23 AC5 LEU A 497 THR A 553 1 57 HELIX 24 AC6 HIS A 561 PHE A 565 5 5 HELIX 25 AC7 SER A 566 GLU A 577 1 12 HELIX 26 AC8 ALA A 578 TYR A 582 5 5 HELIX 27 AC9 TYR A 591 ASN A 608 1 18 HELIX 28 AD1 GLY A 609 SER A 618 5 10 HELIX 29 AD2 VAL A 619 ALA A 621 5 3 HELIX 30 AD3 LYS A 622 ASN A 647 1 26 HELIX 31 AD4 ASN A 654 CYS A 659 5 6 HELIX 32 AD5 SER A 661 GLU A 670 1 10 HELIX 33 AD6 SER A 684 GLN A 698 1 15 HELIX 34 AD7 LEU A 701 CYS A 708 1 8 SHEET 1 AA1 2 VAL A 59 ILE A 62 0 SHEET 2 AA1 2 LYS A 84 LEU A 87 1 O LYS A 84 N VAL A 60 SHEET 1 AA2 3 THR A 195 PRO A 196 0 SHEET 2 AA2 3 VAL A 227 VAL A 229 -1 O VAL A 229 N THR A 195 SHEET 3 AA2 3 LYS A 235 ASP A 237 -1 O VAL A 236 N ALA A 228 SHEET 1 AA3 2 LEU A 390 ASP A 392 0 SHEET 2 AA3 2 LYS A 397 LEU A 399 -1 O LEU A 399 N LEU A 390 LINK C THR A 205 N1 MDO A 206 1555 1555 1.32 LINK C3 MDO A 206 N ASP A 209 1555 1555 1.33 CISPEP 1 ASN A 388 PRO A 389 0 -7.12 CRYST1 209.918 209.918 110.546 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004764 0.002750 0.000000 0.00000 SCALE2 0.000000 0.005501 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009046 0.00000 CONECT 1148 1153 CONECT 1153 1148 1154 CONECT 1154 1153 1155 1156 CONECT 1155 1154 1157 1162 CONECT 1156 1154 CONECT 1157 1155 1158 CONECT 1158 1157 1159 1161 CONECT 1159 1158 1160 1162 CONECT 1160 1159 CONECT 1161 1158 CONECT 1162 1155 1159 1163 CONECT 1163 1162 1164 CONECT 1164 1163 1165 1166 CONECT 1165 1164 CONECT 1166 1164 MASTER 447 0 1 34 7 0 0 6 5066 1 15 57 END