data_9PLB # _entry.id 9PLB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.416 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9PLB pdb_00009plb 10.2210/pdb9plb/pdb WWPDB D_1000297926 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-07-22 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9PLB _pdbx_database_status.recvd_initial_deposition_date 2025-07-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 3 _pdbx_contact_author.email lyatsun1@swarthmore.edu _pdbx_contact_author.name_first Liliya _pdbx_contact_author.name_last Yatsunyk _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3946-0939 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hendrickson, A.D.' 1 0009-0005-1724-9544 'Xing, E.R.' 2 0000-0002-5248-142X 'Yatsunyk, L.A.' 3 0000-0003-3946-0939 'Mergny, J.L.' 4 0000-0003-3043-8401 'Chen, Y.' 5 0009-0006-2247-6458 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'SubG4s: A Novel Class of Bulge-Rich G-Quadruplexes' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hendrickson, A.D.' 1 0009-0005-1724-9544 primary 'Xing, E.' 2 0000-0002-5248-142X primary 'Chen, Y.' 3 0009-0006-2247-6458 primary 'Wang, J.' 4 ? primary 'Yatsunyk, L.A.' 5 0000-0003-3946-0939 primary 'Mergny, J.L.' 6 0000-0003-3043-8401 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA (13-MER)' 4109.652 2 ? ? ? ? 2 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 water nat water 18.015 132 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GTGGTGTGTGGTG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'TETRAETHYLENE GLYCOL' PG4 3 'POTASSIUM ION' K 4 'SODIUM ION' NA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DG n 1 7 DT n 1 8 DG n 1 9 DT n 1 10 DG n 1 11 DG n 1 12 DT n 1 13 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 13 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DG 13 13 13 DG DG A . n B 1 1 DG 1 1 1 DG DG B . n B 1 2 DT 2 2 2 DT DT B . n B 1 3 DG 3 3 3 DG DG B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DT 5 5 5 DT DT B . n B 1 6 DG 6 6 6 DG DG B . n B 1 7 DT 7 7 7 DT DT B . n B 1 8 DG 8 8 8 DG DG B . n B 1 9 DT 9 9 9 DT DT B . n B 1 10 DG 10 10 10 DG DG B . n B 1 11 DG 11 11 11 DG DG B . n B 1 12 DT 12 12 12 DT DT B . n B 1 13 DG 13 13 13 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PG4 1 101 101 PG4 PG4 A . D 3 K 1 102 1 K K A . E 3 K 1 103 2 K K A . F 4 NA 1 104 1 NA NA A . G 3 K 1 101 3 K K B . H 4 NA 1 102 2 NA NA B . I 5 HOH 1 201 2 HOH HOH A . I 5 HOH 2 202 39 HOH HOH A . I 5 HOH 3 203 100 HOH HOH A . I 5 HOH 4 204 104 HOH HOH A . I 5 HOH 5 205 61 HOH HOH A . I 5 HOH 6 206 69 HOH HOH A . I 5 HOH 7 207 102 HOH HOH A . I 5 HOH 8 208 6 HOH HOH A . I 5 HOH 9 209 23 HOH HOH A . I 5 HOH 10 210 97 HOH HOH A . I 5 HOH 11 211 86 HOH HOH A . I 5 HOH 12 212 5 HOH HOH A . I 5 HOH 13 213 66 HOH HOH A . I 5 HOH 14 214 73 HOH HOH A . I 5 HOH 15 215 17 HOH HOH A . I 5 HOH 16 216 48 HOH HOH A . I 5 HOH 17 217 35 HOH HOH A . I 5 HOH 18 218 55 HOH HOH A . I 5 HOH 19 219 51 HOH HOH A . I 5 HOH 20 220 56 HOH HOH A . I 5 HOH 21 221 65 HOH HOH A . I 5 HOH 22 222 24 HOH HOH A . I 5 HOH 23 223 64 HOH HOH A . I 5 HOH 24 224 101 HOH HOH A . I 5 HOH 25 225 62 HOH HOH A . I 5 HOH 26 226 42 HOH HOH A . I 5 HOH 27 227 89 HOH HOH A . I 5 HOH 28 228 127 HOH HOH A . I 5 HOH 29 229 60 HOH HOH A . I 5 HOH 30 230 49 HOH HOH A . I 5 HOH 31 231 41 HOH HOH A . I 5 HOH 32 232 133 HOH HOH A . I 5 HOH 33 233 78 HOH HOH A . I 5 HOH 34 234 93 HOH HOH A . I 5 HOH 35 235 4 HOH HOH A . I 5 HOH 36 236 30 HOH HOH A . I 5 HOH 37 237 52 HOH HOH A . I 5 HOH 38 238 63 HOH HOH A . I 5 HOH 39 239 120 HOH HOH A . I 5 HOH 40 240 32 HOH HOH A . I 5 HOH 41 241 84 HOH HOH A . I 5 HOH 42 242 58 HOH HOH A . I 5 HOH 43 243 76 HOH HOH A . I 5 HOH 44 244 36 HOH HOH A . I 5 HOH 45 245 28 HOH HOH A . I 5 HOH 46 246 18 HOH HOH A . I 5 HOH 47 247 107 HOH HOH A . I 5 HOH 48 248 20 HOH HOH A . I 5 HOH 49 249 3 HOH HOH A . I 5 HOH 50 250 119 HOH HOH A . I 5 HOH 51 251 27 HOH HOH A . I 5 HOH 52 252 110 HOH HOH A . I 5 HOH 53 253 112 HOH HOH A . I 5 HOH 54 254 80 HOH HOH A . I 5 HOH 55 255 79 HOH HOH A . I 5 HOH 56 256 50 HOH HOH A . I 5 HOH 57 257 70 HOH HOH A . I 5 HOH 58 258 103 HOH HOH A . I 5 HOH 59 259 130 HOH HOH A . I 5 HOH 60 260 126 HOH HOH A . I 5 HOH 61 261 91 HOH HOH A . I 5 HOH 62 262 94 HOH HOH A . I 5 HOH 63 263 129 HOH HOH A . I 5 HOH 64 264 53 HOH HOH A . I 5 HOH 65 265 99 HOH HOH A . I 5 HOH 66 266 105 HOH HOH A . I 5 HOH 67 267 22 HOH HOH A . I 5 HOH 68 268 9 HOH HOH A . I 5 HOH 69 269 122 HOH HOH A . J 5 HOH 1 201 71 HOH HOH B . J 5 HOH 2 202 38 HOH HOH B . J 5 HOH 3 203 43 HOH HOH B . J 5 HOH 4 204 95 HOH HOH B . J 5 HOH 5 205 82 HOH HOH B . J 5 HOH 6 206 21 HOH HOH B . J 5 HOH 7 207 81 HOH HOH B . J 5 HOH 8 208 44 HOH HOH B . J 5 HOH 9 209 90 HOH HOH B . J 5 HOH 10 210 34 HOH HOH B . J 5 HOH 11 211 11 HOH HOH B . J 5 HOH 12 212 33 HOH HOH B . J 5 HOH 13 213 40 HOH HOH B . J 5 HOH 14 214 45 HOH HOH B . J 5 HOH 15 215 31 HOH HOH B . J 5 HOH 16 216 8 HOH HOH B . J 5 HOH 17 217 125 HOH HOH B . J 5 HOH 18 218 19 HOH HOH B . J 5 HOH 19 219 12 HOH HOH B . J 5 HOH 20 220 59 HOH HOH B . J 5 HOH 21 221 15 HOH HOH B . J 5 HOH 22 222 74 HOH HOH B . J 5 HOH 23 223 54 HOH HOH B . J 5 HOH 24 224 113 HOH HOH B . J 5 HOH 25 225 1 HOH HOH B . J 5 HOH 26 226 7 HOH HOH B . J 5 HOH 27 227 47 HOH HOH B . J 5 HOH 28 228 16 HOH HOH B . J 5 HOH 29 229 37 HOH HOH B . J 5 HOH 30 230 124 HOH HOH B . J 5 HOH 31 231 72 HOH HOH B . J 5 HOH 32 232 83 HOH HOH B . J 5 HOH 33 233 46 HOH HOH B . J 5 HOH 34 234 25 HOH HOH B . J 5 HOH 35 235 77 HOH HOH B . J 5 HOH 36 236 26 HOH HOH B . J 5 HOH 37 237 29 HOH HOH B . J 5 HOH 38 238 96 HOH HOH B . J 5 HOH 39 239 88 HOH HOH B . J 5 HOH 40 240 10 HOH HOH B . J 5 HOH 41 241 131 HOH HOH B . J 5 HOH 42 242 68 HOH HOH B . J 5 HOH 43 243 114 HOH HOH B . J 5 HOH 44 244 121 HOH HOH B . J 5 HOH 45 245 87 HOH HOH B . J 5 HOH 46 246 13 HOH HOH B . J 5 HOH 47 247 92 HOH HOH B . J 5 HOH 48 248 118 HOH HOH B . J 5 HOH 49 249 14 HOH HOH B . J 5 HOH 50 250 116 HOH HOH B . J 5 HOH 51 251 128 HOH HOH B . J 5 HOH 52 252 85 HOH HOH B . J 5 HOH 53 253 111 HOH HOH B . J 5 HOH 54 254 98 HOH HOH B . J 5 HOH 55 255 57 HOH HOH B . J 5 HOH 56 256 117 HOH HOH B . J 5 HOH 57 257 115 HOH HOH B . J 5 HOH 58 258 108 HOH HOH B . J 5 HOH 59 259 67 HOH HOH B . J 5 HOH 60 260 123 HOH HOH B . J 5 HOH 61 261 109 HOH HOH B . J 5 HOH 62 262 132 HOH HOH B . J 5 HOH 63 263 106 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.21.1_5419 ? 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . ? 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.21.2_5419 ? 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 115.616 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9PLB _cell.details ? _cell.formula_units_Z ? _cell.length_a 24.628 _cell.length_a_esd ? _cell.length_b 46.178 _cell.length_b_esd ? _cell.length_c 28.320 _cell.length_c_esd ? _cell.volume 29041.917 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9PLB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9PLB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.80 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 29.5 _exptl_crystal.description 'Flat parallelograms' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.08 M Calcium chloride, 0.04 M Sodium Cacodylate 6.5, 0.012 M Spermine tetrahydrochloride, 37% w/v MPD' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 285 # _diffrn.ambient_environment ? _diffrn.ambient_temp 196 _diffrn.ambient_temp_details 'Liquid nitrogen' _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2025-06-17 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.688790 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.688790 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-2 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate 5.41 _reflns.entry_id 9PLB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.878 _reflns.d_resolution_low 23.09 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 45563 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.119 _reflns.pdbx_Rpim_I_all 0.059 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.104 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 0.878 _reflns_shell.d_res_low 0.893 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2241 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.483 _reflns_shell.pdbx_Rpim_I_all 0.735 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.286 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.280 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 9.46 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9PLB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.88 _refine.ls_d_res_low 23.09 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 45369 _refine.ls_number_reflns_R_free 2258 _refine.ls_number_reflns_R_work 43111 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.53 _refine.ls_percent_reflns_R_free 4.98 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1455 _refine.ls_R_factor_R_free 0.1563 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1450 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 16.1382 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0729 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 0.88 _refine_hist.d_res_low 23.09 _refine_hist.number_atoms_solvent 132 _refine_hist.number_atoms_total 696 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 546 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0095 ? 624 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 1.1880 ? 959 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.0488 ? 102 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.0190 ? 26 ? f_plane_restr ? ? ? 'X-RAY DIFFRACTION' ? 37.1531 ? 262 ? f_dihedral_angle_d ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 0.88 0.90 . . 132 2579 96.31 . . . . 0.2919 . . . . . . . . . . . . . . . 0.2838 'X-RAY DIFFRACTION' 0.90 0.92 . . 133 2703 98.40 . . . . 0.2664 . . . . . . . . . . . . . . . 0.2858 'X-RAY DIFFRACTION' 0.92 0.94 . . 133 2641 99.00 . . . . 0.2516 . . . . . . . . . . . . . . . 0.2560 'X-RAY DIFFRACTION' 0.94 0.97 . . 162 2648 99.61 . . . . 0.2215 . . . . . . . . . . . . . . . 0.2252 'X-RAY DIFFRACTION' 0.97 0.99 . . 164 2673 99.89 . . . . 0.1963 . . . . . . . . . . . . . . . 0.2238 'X-RAY DIFFRACTION' 0.99 1.03 . . 152 2720 99.83 . . . . 0.1690 . . . . . . . . . . . . . . . 0.1765 'X-RAY DIFFRACTION' 1.03 1.06 . . 142 2682 100.00 . . . . 0.1530 . . . . . . . . . . . . . . . 0.1605 'X-RAY DIFFRACTION' 1.06 1.11 . . 151 2680 100.00 . . . . 0.1278 . . . . . . . . . . . . . . . 0.1357 'X-RAY DIFFRACTION' 1.11 1.16 . . 148 2695 100.00 . . . . 0.1135 . . . . . . . . . . . . . . . 0.1355 'X-RAY DIFFRACTION' 1.16 1.22 . . 118 2738 99.96 . . . . 0.1073 . . . . . . . . . . . . . . . 0.1200 'X-RAY DIFFRACTION' 1.22 1.29 . . 121 2741 100.00 . . . . 0.1180 . . . . . . . . . . . . . . . 0.1303 'X-RAY DIFFRACTION' 1.29 1.39 . . 132 2677 99.93 . . . . 0.1168 . . . . . . . . . . . . . . . 0.1471 'X-RAY DIFFRACTION' 1.39 1.53 . . 146 2741 99.97 . . . . 0.1295 . . . . . . . . . . . . . . . 0.1362 'X-RAY DIFFRACTION' 1.53 1.76 . . 154 2697 99.93 . . . . 0.1173 . . . . . . . . . . . . . . . 0.1287 'X-RAY DIFFRACTION' 1.76 2.21 . . 124 2729 99.89 . . . . 0.1390 . . . . . . . . . . . . . . . 0.1453 'X-RAY DIFFRACTION' 2.21 23.09 . . 146 2767 99.86 . . . . 0.1414 . . . . . . . . . . . . . . . 0.1462 # _struct.entry_id 9PLB _struct.title 'JLM3 left-handed, parallel G-quadruplex in P1 21 1 Spacegroup' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9PLB _struct_keywords.text 'G-quadruplex, left-handed G-quadruplex, parallel, bulge, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 4 ? I N N 5 ? J N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9PLB _struct_ref.pdbx_db_accession 9PLB _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9PLB A 1 ? 13 ? 9PLB 1 ? 13 ? 1 13 2 1 9PLB B 1 ? 13 ? 9PLB 1 ? 13 ? 1 13 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 D K . K ? ? A DG 1 A K 102 1_555 ? ? ? ? ? ? ? 2.876 ? ? metalc2 metalc ? ? A DG 1 O6 ? ? ? 1_555 E K . K ? ? A DG 1 A K 103 1_555 ? ? ? ? ? ? ? 2.832 ? ? metalc3 metalc ? ? A DG 3 O6 ? ? ? 1_555 D K . K ? ? A DG 3 A K 102 1_555 ? ? ? ? ? ? ? 2.802 ? ? metalc4 metalc ? ? A DG 3 OP1 ? ? ? 1_555 F NA . NA ? ? A DG 3 A NA 104 1_555 ? ? ? ? ? ? ? 2.305 ? ? metalc5 metalc ? ? A DG 4 O6 ? ? ? 1_555 D K . K ? ? A DG 4 A K 102 1_555 ? ? ? ? ? ? ? 2.882 ? ? metalc6 metalc ? ? A DG 4 O6 ? ? ? 1_555 E K . K ? ? A DG 4 A K 103 1_555 ? ? ? ? ? ? ? 2.862 ? ? metalc7 metalc ? ? A DG 6 O6 ? ? ? 1_555 D K . K ? ? A DG 6 A K 102 1_555 ? ? ? ? ? ? ? 2.709 ? ? metalc8 metalc ? ? A DG 8 O6 ? ? ? 1_555 D K . K ? ? A DG 8 A K 102 1_555 ? ? ? ? ? ? ? 2.850 ? ? metalc9 metalc ? ? A DG 8 O6 ? ? ? 1_555 E K . K ? ? A DG 8 A K 103 1_555 ? ? ? ? ? ? ? 2.840 ? ? metalc10 metalc ? ? A DG 10 O6 ? ? ? 1_555 D K . K ? ? A DG 10 A K 102 1_555 ? ? ? ? ? ? ? 2.822 ? ? metalc11 metalc ? ? A DG 11 O6 ? ? ? 1_555 D K . K ? ? A DG 11 A K 102 1_555 ? ? ? ? ? ? ? 2.840 ? ? metalc12 metalc ? ? A DG 11 O6 ? ? ? 1_555 E K . K ? ? A DG 11 A K 103 1_555 ? ? ? ? ? ? ? 2.818 ? ? metalc13 metalc ? ? A DG 11 OP1 ? ? ? 1_555 F NA . NA ? ? A DG 11 A NA 104 1_554 ? ? ? ? ? ? ? 2.310 ? ? metalc14 metalc ? ? A DG 13 O6 ? ? ? 1_555 D K . K ? ? A DG 13 A K 102 1_555 ? ? ? ? ? ? ? 2.768 ? ? metalc15 metalc ? ? E K . K ? ? ? 1_555 B DG 1 O6 ? ? A K 103 B DG 1 1_555 ? ? ? ? ? ? ? 2.794 ? ? metalc16 metalc ? ? E K . K ? ? ? 1_555 B DG 4 O6 ? ? A K 103 B DG 4 1_555 ? ? ? ? ? ? ? 2.846 ? ? metalc17 metalc ? ? E K . K ? ? ? 1_555 B DG 8 O6 ? ? A K 103 B DG 8 1_555 ? ? ? ? ? ? ? 2.846 ? ? metalc18 metalc ? ? E K . K ? ? ? 1_555 B DG 11 O6 ? ? A K 103 B DG 11 1_555 ? ? ? ? ? ? ? 2.874 ? ? metalc19 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 104 A HOH 234 1_556 ? ? ? ? ? ? ? 2.201 ? ? metalc20 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 104 A HOH 252 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc21 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 104 A HOH 253 1_556 ? ? ? ? ? ? ? 2.277 ? ? metalc22 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 104 A HOH 255 1_555 ? ? ? ? ? ? ? 2.463 ? ? metalc23 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 104 A HOH 260 1_556 ? ? ? ? ? ? ? 2.657 ? ? metalc24 metalc ? ? B DG 1 O6 ? ? ? 1_555 G K . K ? ? B DG 1 B K 101 1_555 ? ? ? ? ? ? ? 2.838 ? ? metalc25 metalc ? ? B DG 3 O6 ? ? ? 1_555 G K . K ? ? B DG 3 B K 101 1_555 ? ? ? ? ? ? ? 2.844 ? ? metalc26 metalc ? ? B DG 3 OP2 ? ? ? 1_555 H NA . NA ? ? B DG 3 B NA 102 1_555 ? ? ? ? ? ? ? 2.177 ? ? metalc27 metalc ? ? B DG 4 O6 ? ? ? 1_555 G K . K ? ? B DG 4 B K 101 1_555 ? ? ? ? ? ? ? 2.871 ? ? metalc28 metalc ? ? B DG 6 O6 ? ? ? 1_555 G K . K ? ? B DG 6 B K 101 1_555 ? ? ? ? ? ? ? 2.733 ? ? metalc29 metalc ? ? B DG 8 O6 ? ? ? 1_555 G K . K ? ? B DG 8 B K 101 1_555 ? ? ? ? ? ? ? 2.845 ? ? metalc30 metalc ? ? B DG 10 O6 ? ? ? 1_555 G K . K ? ? B DG 10 B K 101 1_555 ? ? ? ? ? ? ? 2.847 ? ? metalc31 metalc ? ? B DG 10 OP2 ? ? ? 1_555 H NA . NA ? ? B DG 10 B NA 102 1_554 ? ? ? ? ? ? ? 2.284 ? ? metalc32 metalc ? ? B DG 11 O6 ? ? ? 1_555 G K . K ? ? B DG 11 B K 101 1_555 ? ? ? ? ? ? ? 2.825 ? ? metalc33 metalc ? ? B DG 13 O6 ? ? ? 1_555 G K . K ? ? B DG 13 B K 101 1_555 ? ? ? ? ? ? ? 2.735 ? ? metalc34 metalc ? ? H NA . NA ? ? ? 1_555 J HOH . O ? ? B NA 102 B HOH 219 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc35 metalc ? ? H NA . NA ? ? ? 1_555 J HOH . O ? ? B NA 102 B HOH 221 1_556 ? ? ? ? ? ? ? 2.442 ? ? metalc36 metalc ? ? H NA . NA ? ? ? 1_555 J HOH . O ? ? B NA 102 B HOH 246 1_555 ? ? ? ? ? ? ? 2.305 ? ? metalc37 metalc ? ? H NA . NA ? ? ? 1_555 J HOH . O ? ? B NA 102 B HOH 249 1_556 ? ? ? ? ? ? ? 2.445 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 4 O6 ? ? A DG 1 A DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 4 N7 ? ? A DG 1 A DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 11 N2 ? ? A DG 1 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 11 N1 ? ? A DG 1 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 6 O6 ? ? A DG 3 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 6 N7 ? ? A DG 3 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 13 N2 ? ? A DG 3 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 13 N1 ? ? A DG 3 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 8 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 11 N7 ? ? A DG 8 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 13 O6 ? ? A DG 10 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 13 N7 ? ? A DG 10 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? B DG 1 N1 ? ? ? 1_555 B DG 4 O6 ? ? B DG 1 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? B DG 1 N2 ? ? ? 1_555 B DG 4 N7 ? ? B DG 1 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? B DG 1 N7 ? ? ? 1_555 B DG 11 N2 ? ? B DG 1 B DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? B DG 1 O6 ? ? ? 1_555 B DG 11 N1 ? ? B DG 1 B DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? B DG 3 N1 ? ? ? 1_555 B DG 6 O6 ? ? B DG 3 B DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? B DG 3 N2 ? ? ? 1_555 B DG 6 N7 ? ? B DG 3 B DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? B DG 3 N7 ? ? ? 1_555 B DG 13 N2 ? ? B DG 3 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? B DG 3 O6 ? ? ? 1_555 B DG 13 N1 ? ? B DG 3 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? B DG 4 N1 ? ? ? 1_555 B DG 8 O6 ? ? B DG 4 B DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DG 8 N7 ? ? B DG 4 B DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? B DG 6 N1 ? ? ? 1_555 B DG 10 O6 ? ? B DG 6 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? B DG 6 N2 ? ? ? 1_555 B DG 10 N7 ? ? B DG 6 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? B DG 8 N1 ? ? ? 1_555 B DG 11 O6 ? ? B DG 8 B DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? B DG 8 N2 ? ? ? 1_555 B DG 11 N7 ? ? B DG 8 B DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? B DG 10 N1 ? ? ? 1_555 B DG 13 O6 ? ? B DG 10 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? B DG 10 N2 ? ? ? 1_555 B DG 13 N7 ? ? B DG 10 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 93.0 ? 2 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 65.8 ? 3 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 78.6 ? 4 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 153.9 ? 5 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 74.3 ? 6 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 89.0 ? 7 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 102.3 ? 8 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 132.1 ? 9 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 67.5 ? 10 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 72.3 ? 11 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 133.0 ? 12 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 108.5 ? 13 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 157.4 ? 14 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 73.0 ? 15 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 93.5 ? 16 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 67.6 ? 17 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 157.2 ? 18 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 102.5 ? 19 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 128.3 ? 20 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 66.7 ? 21 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 79.3 ? 22 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 76.0 ? 23 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 72.3 ? 24 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 130.1 ? 25 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 119.6 ? 26 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 155.4 ? 27 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 72.0 ? 28 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 90.7 ? 29 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 66.7 ? 30 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 103.7 ? 31 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 67.9 ? 32 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 68.5 ? 33 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 103.6 ? 34 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 67.1 ? 35 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 137.2 ? 36 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 83.4 ? 37 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 91.5 ? 38 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 151.9 ? 39 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 82.8 ? 40 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 91.1 ? 41 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 152.3 ? 42 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 138.3 ? 43 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 67.3 ? 44 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 92.0 ? 45 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 152.1 ? 46 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 137.6 ? 47 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 83.3 ? 48 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 103.3 ? 49 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 67.7 ? 50 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 152.1 ? 51 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 139.2 ? 52 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 83.8 ? 53 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 90.8 ? 54 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 68.0 ? 55 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 103.2 ? 56 O6 ? B DG 8 ? B DG 8 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 66.3 ? 57 OP1 ? A DG 3 ? A DG 3 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 OP1 ? A DG 11 ? A DG 11 ? 1_555 13.6 ? 58 OP1 ? A DG 3 ? A DG 3 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 234 ? 1_556 87.8 ? 59 OP1 ? A DG 11 ? A DG 11 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 234 ? 1_556 101.3 ? 60 OP1 ? A DG 3 ? A DG 3 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 252 ? 1_555 85.6 ? 61 OP1 ? A DG 11 ? A DG 11 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 252 ? 1_555 72.8 ? 62 O ? I HOH . ? A HOH 234 ? 1_556 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 252 ? 1_555 152.8 ? 63 OP1 ? A DG 3 ? A DG 3 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 253 ? 1_556 89.8 ? 64 OP1 ? A DG 11 ? A DG 11 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 253 ? 1_556 85.5 ? 65 O ? I HOH . ? A HOH 234 ? 1_556 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 253 ? 1_556 115.6 ? 66 O ? I HOH . ? A HOH 252 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 253 ? 1_556 90.7 ? 67 OP1 ? A DG 3 ? A DG 3 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 255 ? 1_555 84.3 ? 68 OP1 ? A DG 11 ? A DG 11 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 255 ? 1_555 93.6 ? 69 O ? I HOH . ? A HOH 234 ? 1_556 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 255 ? 1_555 54.0 ? 70 O ? I HOH . ? A HOH 252 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 255 ? 1_555 150.6 ? 71 O ? I HOH . ? A HOH 253 ? 1_556 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 255 ? 1_555 61.8 ? 72 OP1 ? A DG 3 ? A DG 3 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 260 ? 1_556 95.5 ? 73 OP1 ? A DG 11 ? A DG 11 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 260 ? 1_556 99.3 ? 74 O ? I HOH . ? A HOH 234 ? 1_556 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 260 ? 1_556 66.8 ? 75 O ? I HOH . ? A HOH 252 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 260 ? 1_556 87.6 ? 76 O ? I HOH . ? A HOH 253 ? 1_556 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 260 ? 1_556 174.2 ? 77 O ? I HOH . ? A HOH 255 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? I HOH . ? A HOH 260 ? 1_556 120.8 ? 78 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 3 ? B DG 3 ? 1_555 95.0 ? 79 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 66.4 ? 80 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 79.7 ? 81 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 6 ? B DG 6 ? 1_555 155.3 ? 82 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 6 ? B DG 6 ? 1_555 74.1 ? 83 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 6 ? B DG 6 ? 1_555 89.5 ? 84 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 102.2 ? 85 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 131.9 ? 86 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 67.3 ? 87 O6 ? B DG 6 ? B DG 6 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 71.7 ? 88 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 132.6 ? 89 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 104.1 ? 90 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 159.0 ? 91 O6 ? B DG 6 ? B DG 6 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 72.2 ? 92 O6 ? B DG 8 ? B DG 8 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 96.4 ? 93 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 68.1 ? 94 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 158.6 ? 95 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 103.8 ? 96 O6 ? B DG 6 ? B DG 6 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 126.6 ? 97 O6 ? B DG 8 ? B DG 8 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 66.9 ? 98 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 80.3 ? 99 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 72.7 ? 100 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 72.4 ? 101 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 127.4 ? 102 O6 ? B DG 6 ? B DG 6 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 122.5 ? 103 O6 ? B DG 8 ? B DG 8 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 155.7 ? 104 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 72.6 ? 105 O6 ? B DG 11 ? B DG 11 ? 1_555 K ? G K . ? B K 101 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 89.5 ? 106 OP2 ? B DG 3 ? B DG 3 ? 1_555 NA ? H NA . ? B NA 102 ? 1_555 OP2 ? B DG 10 ? B DG 10 ? 1_555 22.5 ? 107 OP2 ? B DG 3 ? B DG 3 ? 1_555 NA ? H NA . ? B NA 102 ? 1_555 O ? J HOH . ? B HOH 219 ? 1_555 91.5 ? 108 OP2 ? B DG 10 ? B DG 10 ? 1_555 NA ? H NA . ? B NA 102 ? 1_555 O ? J HOH . ? B HOH 219 ? 1_555 78.0 ? 109 OP2 ? B DG 3 ? B DG 3 ? 1_555 NA ? H NA . ? B NA 102 ? 1_555 O ? J HOH . ? B HOH 221 ? 1_556 88.0 ? 110 OP2 ? B DG 10 ? B DG 10 ? 1_555 NA ? H NA . ? B NA 102 ? 1_555 O ? J HOH . ? B HOH 221 ? 1_556 103.0 ? 111 O ? J HOH . ? B HOH 219 ? 1_555 NA ? H NA . ? B NA 102 ? 1_555 O ? J HOH . ? B HOH 221 ? 1_556 79.7 ? 112 OP2 ? B DG 3 ? B DG 3 ? 1_555 NA ? H NA . ? B NA 102 ? 1_555 O ? J HOH . ? B HOH 246 ? 1_555 91.5 ? 113 OP2 ? B DG 10 ? B DG 10 ? 1_555 NA ? H NA . ? B NA 102 ? 1_555 O ? J HOH . ? B HOH 246 ? 1_555 70.4 ? 114 O ? J HOH . ? B HOH 219 ? 1_555 NA ? H NA . ? B NA 102 ? 1_555 O ? J HOH . ? B HOH 246 ? 1_555 72.6 ? 115 O ? J HOH . ? B HOH 221 ? 1_556 NA ? H NA . ? B NA 102 ? 1_555 O ? J HOH . ? B HOH 246 ? 1_555 152.2 ? 116 OP2 ? B DG 3 ? B DG 3 ? 1_555 NA ? H NA . ? B NA 102 ? 1_555 O ? J HOH . ? B HOH 249 ? 1_556 94.4 ? 117 OP2 ? B DG 10 ? B DG 10 ? 1_555 NA ? H NA . ? B NA 102 ? 1_555 O ? J HOH . ? B HOH 249 ? 1_556 113.8 ? 118 O ? J HOH . ? B HOH 219 ? 1_555 NA ? H NA . ? B NA 102 ? 1_555 O ? J HOH . ? B HOH 249 ? 1_556 156.3 ? 119 O ? J HOH . ? B HOH 221 ? 1_556 NA ? H NA . ? B NA 102 ? 1_555 O ? J HOH . ? B HOH 249 ? 1_556 77.6 ? 120 O ? J HOH . ? B HOH 246 ? 1_555 NA ? H NA . ? B NA 102 ? 1_555 O ? J HOH . ? B HOH 249 ? 1_556 130.1 ? # _pdbx_entry_details.entry_id 9PLB _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 204 ? ? O A HOH 229 ? ? 1.85 2 1 O A HOH 224 ? ? O B HOH 202 ? ? 1.93 3 1 O B HOH 201 ? ? O B HOH 213 ? ? 2.02 4 1 O A HOH 218 ? ? O B HOH 203 ? ? 2.06 5 1 OP2 B DG 8 ? ? O B HOH 201 ? ? 2.13 6 1 O A HOH 239 ? ? O A HOH 268 ? ? 2.18 7 1 O A HOH 237 ? ? O B HOH 242 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 267 ? ? 1_555 O B HOH 215 ? ? 2_656 1.97 2 1 O A HOH 204 ? ? 1_555 O B HOH 218 ? ? 2_646 2.06 3 1 O A HOH 239 ? ? 1_555 O B HOH 238 ? ? 2_645 2.07 4 1 O A HOH 210 ? ? 1_555 O B HOH 203 ? ? 2_645 2.07 5 1 O A HOH 234 ? ? 1_555 O A HOH 255 ? ? 1_554 2.13 6 1 O B HOH 201 ? ? 1_555 O B HOH 202 ? ? 2_645 2.18 7 1 O A HOH 224 ? ? 1_555 O B HOH 201 ? ? 2_655 2.19 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 7 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DT _pdbx_validate_rmsd_bond.auth_seq_id_2 7 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.380 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.039 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.59 108.30 2.29 0.30 N 2 1 "O4'" B DG 6 ? ? "C1'" B DG 6 ? ? N9 B DG 6 ? ? 110.67 108.30 2.37 0.30 N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y+1/2,-z # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DT OP3 O N N 38 DT P P N N 39 DT OP1 O N N 40 DT OP2 O N N 41 DT "O5'" O N N 42 DT "C5'" C N N 43 DT "C4'" C N R 44 DT "O4'" O N N 45 DT "C3'" C N S 46 DT "O3'" O N N 47 DT "C2'" C N N 48 DT "C1'" C N R 49 DT N1 N N N 50 DT C2 C N N 51 DT O2 O N N 52 DT N3 N N N 53 DT C4 C N N 54 DT O4 O N N 55 DT C5 C N N 56 DT C7 C N N 57 DT C6 C N N 58 DT HOP3 H N N 59 DT HOP2 H N N 60 DT "H5'" H N N 61 DT "H5''" H N N 62 DT "H4'" H N N 63 DT "H3'" H N N 64 DT "HO3'" H N N 65 DT "H2'" H N N 66 DT "H2''" H N N 67 DT "H1'" H N N 68 DT H3 H N N 69 DT H71 H N N 70 DT H72 H N N 71 DT H73 H N N 72 DT H6 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 K K K N N 77 NA NA NA N N 78 PG4 O1 O N N 79 PG4 C1 C N N 80 PG4 C2 C N N 81 PG4 O2 O N N 82 PG4 C3 C N N 83 PG4 C4 C N N 84 PG4 O3 O N N 85 PG4 C5 C N N 86 PG4 C6 C N N 87 PG4 O4 O N N 88 PG4 C7 C N N 89 PG4 C8 C N N 90 PG4 O5 O N N 91 PG4 HO1 H N N 92 PG4 H11 H N N 93 PG4 H12 H N N 94 PG4 H21 H N N 95 PG4 H22 H N N 96 PG4 H31 H N N 97 PG4 H32 H N N 98 PG4 H41 H N N 99 PG4 H42 H N N 100 PG4 H51 H N N 101 PG4 H52 H N N 102 PG4 H61 H N N 103 PG4 H62 H N N 104 PG4 H71 H N N 105 PG4 H72 H N N 106 PG4 H81 H N N 107 PG4 H82 H N N 108 PG4 HO5 H N N 109 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 PG4 O1 C1 sing N N 79 PG4 O1 HO1 sing N N 80 PG4 C1 C2 sing N N 81 PG4 C1 H11 sing N N 82 PG4 C1 H12 sing N N 83 PG4 C2 O2 sing N N 84 PG4 C2 H21 sing N N 85 PG4 C2 H22 sing N N 86 PG4 O2 C3 sing N N 87 PG4 C3 C4 sing N N 88 PG4 C3 H31 sing N N 89 PG4 C3 H32 sing N N 90 PG4 C4 O3 sing N N 91 PG4 C4 H41 sing N N 92 PG4 C4 H42 sing N N 93 PG4 O3 C5 sing N N 94 PG4 C5 C6 sing N N 95 PG4 C5 H51 sing N N 96 PG4 C5 H52 sing N N 97 PG4 C6 O4 sing N N 98 PG4 C6 H61 sing N N 99 PG4 C6 H62 sing N N 100 PG4 O4 C7 sing N N 101 PG4 C7 C8 sing N N 102 PG4 C7 H71 sing N N 103 PG4 C7 H72 sing N N 104 PG4 C8 O5 sing N N 105 PG4 C8 H81 sing N N 106 PG4 C8 H82 sing N N 107 PG4 O5 HO5 sing N N 108 # _ndb_struct_conf_na.entry_id 9PLB _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 10 1_555 A DG 13 1_555 1.701 3.354 0.157 -5.982 -3.537 -90.434 1 A_DG10:DG13_A A 10 ? A 13 ? 6 3 1 A DG 11 1_555 A DG 8 1_555 -1.421 -3.581 0.113 -0.755 -3.915 90.826 2 A_DG11:DG8_A A 11 ? A 8 ? 6 3 1 A DG 1 1_555 A DG 4 1_555 1.453 3.564 -0.070 -0.285 4.246 -90.659 3 A_DG1:DG4_A A 1 ? A 4 ? 6 3 1 B DG 10 1_555 B DG 13 1_555 1.709 3.287 0.326 -0.412 -9.608 -92.008 4 B_DG10:DG13_B B 10 ? B 13 ? 6 3 1 B DG 11 1_555 B DG 8 1_555 -1.470 -3.541 0.079 0.594 -5.988 90.890 5 B_DG11:DG8_B B 11 ? B 8 ? 6 3 1 B DG 1 1_555 B DG 4 1_555 1.452 3.569 -0.047 -0.461 4.579 -91.505 6 B_DG1:DG4_B B 1 ? B 4 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 10 1_555 A DG 13 1_555 A DG 11 1_555 A DG 8 1_555 0.564 1.903 -3.333 1.511 1.201 -65.494 -1.708 0.457 -3.375 -1.110 1.396 -65.519 1 AA_DG10DG11:DG8DG13_AA A 10 ? A 13 ? A 11 ? A 8 ? 1 A DG 11 1_555 A DG 8 1_555 A DG 1 1_555 A DG 4 1_555 1.514 3.575 0.006 -6.415 -1.339 -179.690 -1.788 0.757 0.006 0.670 -3.208 -179.691 2 AA_DG11DG1:DG4DG8_AA A 11 ? A 8 ? A 1 ? A 4 ? 1 B DG 10 1_555 B DG 13 1_555 B DG 11 1_555 B DG 8 1_555 0.616 1.975 -3.314 4.655 1.712 -66.971 -1.718 0.371 -3.389 -1.550 4.213 -67.133 3 BB_DG10DG11:DG8DG13_BB B 10 ? B 13 ? B 11 ? B 8 ? 1 B DG 11 1_555 B DG 8 1_555 B DG 1 1_555 B DG 4 1_555 -1.507 -3.564 -0.010 4.705 3.163 179.730 -1.782 0.754 -0.011 1.582 -2.353 179.730 4 BB_DG11DG1:DG4DG8_BB B 11 ? B 8 ? B 1 ? B 4 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1R15CA253134 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6FQ2 _pdbx_initial_refinement_model.details 'Intermolecular left-handed G-quadruplex' # _space_group.name_H-M_alt 'P 1 21 1' _space_group.name_Hall 'P 2yb' _space_group.IT_number 4 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 9PLB _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.040604 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.019468 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021655 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.039160 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 2.51340 1.74867 1.72398 ? 31.80534 0.44561 10.58317 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.53795 0.34799 0.11320 ? 10.08003 29.74760 2.57510 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? K ? ? 8.66788 8.58341 1.68052 ? 12.31593 0.56275 110.00227 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 2.99955 2.25584 1.72788 ? 23.27268 7.45433 0.31622 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 6.63511 3.01293 1.30238 ? 5.54423 0.54580 90.85902 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 3.21184 3.04156 1.73156 ? 18.83700 5.90590 0.24126 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 5.27941 5.27355 4.40635 ? 36.77753 2.58877 0.47041 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #