HEADER OXIDOREDUCTASE 24-JUL-25 9PRV TITLE CRYSTAL STRUCTURE OF THERMOSTABLE VARIANT OF PHOSPHITE DEHYDROGENASE TITLE 2 FROM PSEUDOMONAS STUTZERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHONATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NAD-DEPENDENT PHOSPHITE DEHYDROGENASE; COMPND 5 EC: 1.20.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STUTZERIMONAS STUTZERI; SOURCE 3 ORGANISM_TAXID: 316; SOURCE 4 GENE: PTXD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHOSPHITE DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,A.JOACHIMIAK,K.MICHALSKA,J.OSIPIUK,M.ENDRES,Y.PING REVDAT 1 29-JUL-26 9PRV 0 JRNL AUTH C.CHANG,A.JOACHIMIAK,K.MICHALSKA,J.OSIPIUK,M.ENDRES,Y.PING JRNL TITL THERMOSTABLE VARIANT OF PHOSPHITE DEHYDROGENASE FROM JRNL TITL 2 PSEUDOMONAS STUTZERI IN COMPLEX WITH NAD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1572 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2262 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2522 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 384 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -1.24000 REMARK 3 B12 (A**2) : 0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.215 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2660 ; 0.005 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2606 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3639 ; 1.323 ; 1.817 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5960 ; 0.479 ; 1.747 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 355 ; 6.448 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 29 ; 5.153 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 442 ;11.354 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 424 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3291 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 653 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1339 ; 1.224 ; 1.802 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1339 ; 1.224 ; 1.802 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1679 ; 1.902 ; 3.233 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1680 ; 1.903 ; 3.235 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1321 ; 2.052 ; 2.153 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1322 ; 2.051 ; 2.155 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1947 ; 3.422 ; 3.817 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3063 ; 5.526 ;21.860 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2922 ; 5.167 ;18.550 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 97 REMARK 3 RESIDUE RANGE : A 98 A 175 REMARK 3 RESIDUE RANGE : A 176 A 204 REMARK 3 RESIDUE RANGE : A 205 A 319 REMARK 3 RESIDUE RANGE : A 320 A 328 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5588 25.7254 23.9460 REMARK 3 T TENSOR REMARK 3 T11: 0.0294 T22: 0.0284 REMARK 3 T33: 0.0387 T12: -0.0047 REMARK 3 T13: -0.0122 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.0702 L22: 0.2597 REMARK 3 L33: 0.2453 L12: 0.0784 REMARK 3 L13: 0.0841 L23: 0.0383 REMARK 3 S TENSOR REMARK 3 S11: -0.0320 S12: -0.0072 S13: -0.0082 REMARK 3 S21: -0.0584 S22: -0.0312 S23: -0.0302 REMARK 3 S31: -0.0697 S32: 0.0296 S33: 0.0632 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9PRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1000298275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33281 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 82.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.30 REMARK 200 R MERGE (I) : 0.40600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 50.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.90 REMARK 200 R MERGE FOR SHELL (I) : 0.05700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE, TRIS, PEG 8000, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.88567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.77133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.88567 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 93.77133 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.88567 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 93.77133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 46.88567 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 93.77133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.88567 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 834 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 884 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 329 REMARK 465 LYS A 330 REMARK 465 ALA A 331 REMARK 465 ASN A 332 REMARK 465 PRO A 333 REMARK 465 ALA A 334 REMARK 465 ALA A 335 REMARK 465 ASP A 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 236 CB - CA - C ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 78 43.20 -103.02 REMARK 500 MET A 153 45.88 -144.32 REMARK 500 GLN A 154 179.35 -58.80 REMARK 500 ALA A 207 52.32 -146.24 REMARK 500 CYS A 236 -85.60 -108.35 REMARK 500 CYS A 236 -87.40 -106.52 REMARK 500 ASN A 286 57.29 -93.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 983 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 984 DISTANCE = 6.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 684 O REMARK 620 2 HOH A 758 O 92.5 REMARK 620 3 HOH A 772 O 93.1 88.2 REMARK 620 4 HOH A 923 O 92.8 91.5 174.0 REMARK 620 5 HOH A 947 O 175.1 86.0 91.5 82.6 REMARK 620 6 HOH A 950 O 94.6 171.4 86.6 92.9 87.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9PR0 RELATED DB: PDB DBREF 9PRV A 1 336 UNP O69054 PTXD_STUST 1 336 SEQADV 9PRV GLU A 13 UNP O69054 ASP 13 ENGINEERED MUTATION SEQADV 9PRV ILE A 26 UNP O69054 MET 26 ENGINEERED MUTATION SEQADV 9PRV ILE A 71 UNP O69054 VAL 71 ENGINEERED MUTATION SEQADV 9PRV LYS A 130 UNP O69054 GLU 130 ENGINEERED MUTATION SEQADV 9PRV ARG A 132 UNP O69054 GLN 132 ENGINEERED MUTATION SEQADV 9PRV ARG A 137 UNP O69054 GLN 137 ENGINEERED MUTATION SEQADV 9PRV PHE A 150 UNP O69054 ILE 150 ENGINEERED MUTATION SEQADV 9PRV GLN A 154 UNP O69054 GLY 154 ENGINEERED MUTATION SEQADV 9PRV ASN A 155 UNP O69054 ALA 155 ENGINEERED MUTATION SEQADV 9PRV ALA A 175 UNP O69054 GLU 175 ENGINEERED MUTATION SEQADV 9PRV PHE A 176 UNP O69054 ALA 176 ENGINEERED MUTATION SEQADV 9PRV GLU A 177 UNP O69054 LYS 177 ENGINEERED MUTATION SEQADV 9PRV LEU A 215 UNP O69054 GLN 215 ENGINEERED MUTATION SEQADV 9PRV GLN A 275 UNP O69054 ARG 275 ENGINEERED MUTATION SEQADV 9PRV GLN A 276 UNP O69054 LEU 276 ENGINEERED MUTATION SEQADV 9PRV LEU A 313 UNP O69054 ILE 313 ENGINEERED MUTATION SEQADV 9PRV ALA A 315 UNP O69054 VAL 315 ENGINEERED MUTATION SEQADV 9PRV GLU A 319 UNP O69054 ALA 319 ENGINEERED MUTATION SEQADV 9PRV VAL A 325 UNP O69054 ALA 325 ENGINEERED MUTATION SEQADV 9PRV ASN A 332 UNP O69054 GLU 332 ENGINEERED MUTATION SEQADV 9PRV ASP A 336 UNP O69054 CYS 336 ENGINEERED MUTATION SEQRES 1 A 336 MET LEU PRO LYS LEU VAL ILE THR HIS ARG VAL HIS GLU SEQRES 2 A 336 GLU ILE LEU GLN LEU LEU ALA PRO HIS CYS GLU LEU ILE SEQRES 3 A 336 THR ASN GLN THR ASP SER THR LEU THR ARG GLU GLU ILE SEQRES 4 A 336 LEU ARG ARG CYS ARG ASP ALA GLN ALA MET MET ALA PHE SEQRES 5 A 336 MET PRO ASP ARG VAL ASP ALA ASP PHE LEU GLN ALA CYS SEQRES 6 A 336 PRO GLU LEU ARG VAL ILE GLY CYS ALA LEU LYS GLY PHE SEQRES 7 A 336 ASP ASN PHE ASP VAL ASP ALA CYS THR ALA ARG GLY VAL SEQRES 8 A 336 TRP LEU THR PHE VAL PRO ASP LEU LEU THR VAL PRO THR SEQRES 9 A 336 ALA GLU LEU ALA ILE GLY LEU ALA VAL GLY LEU GLY ARG SEQRES 10 A 336 HIS LEU ARG ALA ALA ASP ALA PHE VAL ARG SER GLY LYS SEQRES 11 A 336 PHE ARG GLY TRP GLN PRO ARG PHE TYR GLY THR GLY LEU SEQRES 12 A 336 ASP ASN ALA THR VAL GLY PHE LEU GLY MET GLN ASN ILE SEQRES 13 A 336 GLY LEU ALA MET ALA ASP ARG LEU GLN GLY TRP GLY ALA SEQRES 14 A 336 THR LEU GLN TYR HIS ALA PHE GLU ALA LEU ASP THR GLN SEQRES 15 A 336 THR GLU GLN ARG LEU GLY LEU ARG GLN VAL ALA CYS SER SEQRES 16 A 336 GLU LEU PHE ALA SER SER ASP PHE ILE LEU LEU ALA LEU SEQRES 17 A 336 PRO LEU ASN ALA ASP THR LEU HIS LEU VAL ASN ALA GLU SEQRES 18 A 336 LEU LEU ALA LEU VAL ARG PRO GLY ALA LEU LEU VAL ASN SEQRES 19 A 336 PRO CYS ARG GLY SER VAL VAL ASP GLU ALA ALA VAL LEU SEQRES 20 A 336 ALA ALA LEU GLU ARG GLY GLN LEU GLY GLY TYR ALA ALA SEQRES 21 A 336 ASP VAL PHE GLU MET GLU ASP TRP ALA ARG ALA ASP ARG SEQRES 22 A 336 PRO GLN GLN ILE ASP PRO ALA LEU LEU ALA HIS PRO ASN SEQRES 23 A 336 THR LEU PHE THR PRO HIS ILE GLY SER ALA VAL ARG ALA SEQRES 24 A 336 VAL ARG LEU GLU ILE GLU ARG CYS ALA ALA GLN ASN ILE SEQRES 25 A 336 LEU GLN ALA LEU ALA GLY GLU ARG PRO ILE ASN ALA VAL SEQRES 26 A 336 ASN ARG LEU PRO LYS ALA ASN PRO ALA ALA ASP HET MG A 501 1 HET CL A 502 1 HET CL A 503 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 2 MG MG 2+ FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *384(H2 O) HELIX 1 AA1 HIS A 12 ALA A 20 1 9 HELIX 2 AA2 THR A 35 ARG A 44 1 10 HELIX 3 AA3 ASP A 58 ALA A 64 1 7 HELIX 4 AA4 ASP A 82 ARG A 89 1 8 HELIX 5 AA5 LEU A 100 ARG A 117 1 18 HELIX 6 AA6 HIS A 118 SER A 128 1 11 HELIX 7 AA7 GLN A 154 LEU A 164 1 11 HELIX 8 AA8 GLN A 165 GLY A 168 5 4 HELIX 9 AA9 ASP A 180 GLY A 188 1 9 HELIX 10 AB1 ALA A 193 SER A 201 1 9 HELIX 11 AB2 ASN A 219 ALA A 224 1 6 HELIX 12 AB3 ARG A 237 VAL A 241 5 5 HELIX 13 AB4 ASP A 242 ARG A 252 1 11 HELIX 14 AB5 PHE A 263 ASP A 267 5 5 HELIX 15 AB6 ASP A 278 ALA A 283 1 6 HELIX 16 AB7 VAL A 297 ALA A 317 1 21 SHEET 1 AA1 5 GLU A 24 ILE A 26 0 SHEET 2 AA1 5 LYS A 4 ILE A 7 1 N LEU A 5 O GLU A 24 SHEET 3 AA1 5 ALA A 48 ALA A 51 1 O MET A 50 N VAL A 6 SHEET 4 AA1 5 VAL A 70 CYS A 73 1 O GLY A 72 N MET A 49 SHEET 5 AA1 5 TRP A 92 THR A 94 1 O TRP A 92 N ILE A 71 SHEET 1 AA2 7 LEU A 189 GLN A 191 0 SHEET 2 AA2 7 THR A 170 HIS A 174 1 N TYR A 173 O ARG A 190 SHEET 3 AA2 7 THR A 147 LEU A 151 1 N VAL A 148 O THR A 170 SHEET 4 AA2 7 PHE A 203 LEU A 206 1 O PHE A 203 N GLY A 149 SHEET 5 AA2 7 ALA A 230 ASN A 234 1 O VAL A 233 N ILE A 204 SHEET 6 AA2 7 LEU A 255 ALA A 260 1 O ALA A 259 N ASN A 234 SHEET 7 AA2 7 THR A 287 PHE A 289 1 O LEU A 288 N ALA A 260 LINK MG MG A 501 O HOH A 684 1555 1555 2.08 LINK MG MG A 501 O HOH A 758 1555 1555 2.04 LINK MG MG A 501 O HOH A 772 1555 1555 2.15 LINK MG MG A 501 O HOH A 923 1555 1555 2.17 LINK MG MG A 501 O HOH A 947 1555 6554 2.14 LINK MG MG A 501 O HOH A 950 1555 1555 2.18 CRYST1 93.711 93.711 140.657 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010671 0.006161 0.000000 0.00000 SCALE2 0.000000 0.012322 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007109 0.00000 CONECT 2601 2687 2761 2775 2926 CONECT 2601 2953 CONECT 2687 2601 CONECT 2761 2601 CONECT 2775 2601 CONECT 2926 2601 CONECT 2953 2601 MASTER 396 0 3 16 12 0 0 6 2909 1 7 26 END