data_9PX8 # _entry.id 9PX8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.416 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9PX8 pdb_00009px8 10.2210/pdb9px8/pdb WWPDB D_1000298553 ? ? EMDB EMD-71961 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-08-12 ? 2 'EM metadata' 1 0 2026-08-12 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9PX8 _pdbx_database_status.recvd_initial_deposition_date 2025-08-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of designed Orb2 amyloid (LVLVF; polymorph 1)' _pdbx_database_related.db_id EMD-71961 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email lukasz.joachimiak@utsouthwestern.edu _pdbx_contact_author.name_first Lukasz _pdbx_contact_author.name_last Joachimiak _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3061-5850 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Singh, R.' 1 0000-0003-2456-7127 'Kaili, L.' 2 ? 'Si, K.' 3 0000-0002-9613-6273 'Joachimiak, L.' 4 0000-0003-3061-5850 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Cryo-EM structure of designed Orb2 amyloid (LVLVF, polymorph 1)' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Singh, R.' 1 0000-0003-2456-7127 primary 'Joachimiak, L.' 2 0000-0003-3061-5850 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Designed Orb2 Amyloid Core' _entity.formula_weight 3920.249 _entity.pdbx_number_of_molecules 15 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code QLHQQQHQQQHLQHVQHLQQVQFHQHQQQLS _entity_poly.pdbx_seq_one_letter_code_can QLHQQQHQQQHLQHVQHLQQVQFHQHQQQLS _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 LEU n 1 3 HIS n 1 4 GLN n 1 5 GLN n 1 6 GLN n 1 7 HIS n 1 8 GLN n 1 9 GLN n 1 10 GLN n 1 11 HIS n 1 12 LEU n 1 13 GLN n 1 14 HIS n 1 15 VAL n 1 16 GLN n 1 17 HIS n 1 18 LEU n 1 19 GLN n 1 20 GLN n 1 21 VAL n 1 22 GLN n 1 23 PHE n 1 24 HIS n 1 25 GLN n 1 26 HIS n 1 27 GLN n 1 28 GLN n 1 29 GLN n 1 30 LEU n 1 31 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 31 _pdbx_entity_src_syn.organism_scientific 'Drosophila melanogaster' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 7227 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 1 GLN GLN A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 HIS 3 3 3 HIS HIS A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 HIS 7 7 7 HIS HIS A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 HIS 11 11 11 HIS HIS A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 HIS 14 14 14 HIS HIS A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 HIS 17 17 17 HIS HIS A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 HIS 24 24 24 HIS HIS A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 HIS 26 26 26 HIS HIS A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 SER 31 31 31 SER SER A . n B 1 1 GLN 1 1 1 GLN GLN B . n B 1 2 LEU 2 2 2 LEU LEU B . n B 1 3 HIS 3 3 3 HIS HIS B . n B 1 4 GLN 4 4 4 GLN GLN B . n B 1 5 GLN 5 5 5 GLN GLN B . n B 1 6 GLN 6 6 6 GLN GLN B . n B 1 7 HIS 7 7 7 HIS HIS B . n B 1 8 GLN 8 8 8 GLN GLN B . n B 1 9 GLN 9 9 9 GLN GLN B . n B 1 10 GLN 10 10 10 GLN GLN B . n B 1 11 HIS 11 11 11 HIS HIS B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 GLN 13 13 13 GLN GLN B . n B 1 14 HIS 14 14 14 HIS HIS B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 GLN 16 16 16 GLN GLN B . n B 1 17 HIS 17 17 17 HIS HIS B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 GLN 19 19 19 GLN GLN B . n B 1 20 GLN 20 20 20 GLN GLN B . n B 1 21 VAL 21 21 21 VAL VAL B . n B 1 22 GLN 22 22 22 GLN GLN B . n B 1 23 PHE 23 23 23 PHE PHE B . n B 1 24 HIS 24 24 24 HIS HIS B . n B 1 25 GLN 25 25 25 GLN GLN B . n B 1 26 HIS 26 26 26 HIS HIS B . n B 1 27 GLN 27 27 27 GLN GLN B . n B 1 28 GLN 28 28 28 GLN GLN B . n B 1 29 GLN 29 29 29 GLN GLN B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 SER 31 31 31 SER SER B . n C 1 1 GLN 1 1 1 GLN GLN C . n C 1 2 LEU 2 2 2 LEU LEU C . n C 1 3 HIS 3 3 3 HIS HIS C . n C 1 4 GLN 4 4 4 GLN GLN C . n C 1 5 GLN 5 5 5 GLN GLN C . n C 1 6 GLN 6 6 6 GLN GLN C . n C 1 7 HIS 7 7 7 HIS HIS C . n C 1 8 GLN 8 8 8 GLN GLN C . n C 1 9 GLN 9 9 9 GLN GLN C . n C 1 10 GLN 10 10 10 GLN GLN C . n C 1 11 HIS 11 11 11 HIS HIS C . n C 1 12 LEU 12 12 12 LEU LEU C . n C 1 13 GLN 13 13 13 GLN GLN C . n C 1 14 HIS 14 14 14 HIS HIS C . n C 1 15 VAL 15 15 15 VAL VAL C . n C 1 16 GLN 16 16 16 GLN GLN C . n C 1 17 HIS 17 17 17 HIS HIS C . n C 1 18 LEU 18 18 18 LEU LEU C . n C 1 19 GLN 19 19 19 GLN GLN C . n C 1 20 GLN 20 20 20 GLN GLN C . n C 1 21 VAL 21 21 21 VAL VAL C . n C 1 22 GLN 22 22 22 GLN GLN C . n C 1 23 PHE 23 23 23 PHE PHE C . n C 1 24 HIS 24 24 24 HIS HIS C . n C 1 25 GLN 25 25 25 GLN GLN C . n C 1 26 HIS 26 26 26 HIS HIS C . n C 1 27 GLN 27 27 27 GLN GLN C . n C 1 28 GLN 28 28 28 GLN GLN C . n C 1 29 GLN 29 29 29 GLN GLN C . n C 1 30 LEU 30 30 30 LEU LEU C . n C 1 31 SER 31 31 31 SER SER C . n D 1 1 GLN 1 1 1 GLN GLN D . n D 1 2 LEU 2 2 2 LEU LEU D . n D 1 3 HIS 3 3 3 HIS HIS D . n D 1 4 GLN 4 4 4 GLN GLN D . n D 1 5 GLN 5 5 5 GLN GLN D . n D 1 6 GLN 6 6 6 GLN GLN D . n D 1 7 HIS 7 7 7 HIS HIS D . n D 1 8 GLN 8 8 8 GLN GLN D . n D 1 9 GLN 9 9 9 GLN GLN D . n D 1 10 GLN 10 10 10 GLN GLN D . n D 1 11 HIS 11 11 11 HIS HIS D . n D 1 12 LEU 12 12 12 LEU LEU D . n D 1 13 GLN 13 13 13 GLN GLN D . n D 1 14 HIS 14 14 14 HIS HIS D . n D 1 15 VAL 15 15 15 VAL VAL D . n D 1 16 GLN 16 16 16 GLN GLN D . n D 1 17 HIS 17 17 17 HIS HIS D . n D 1 18 LEU 18 18 18 LEU LEU D . n D 1 19 GLN 19 19 19 GLN GLN D . n D 1 20 GLN 20 20 20 GLN GLN D . n D 1 21 VAL 21 21 21 VAL VAL D . n D 1 22 GLN 22 22 22 GLN GLN D . n D 1 23 PHE 23 23 23 PHE PHE D . n D 1 24 HIS 24 24 24 HIS HIS D . n D 1 25 GLN 25 25 25 GLN GLN D . n D 1 26 HIS 26 26 26 HIS HIS D . n D 1 27 GLN 27 27 27 GLN GLN D . n D 1 28 GLN 28 28 28 GLN GLN D . n D 1 29 GLN 29 29 29 GLN GLN D . n D 1 30 LEU 30 30 30 LEU LEU D . n D 1 31 SER 31 31 31 SER SER D . n E 1 1 GLN 1 1 1 GLN GLN E . n E 1 2 LEU 2 2 2 LEU LEU E . n E 1 3 HIS 3 3 3 HIS HIS E . n E 1 4 GLN 4 4 4 GLN GLN E . n E 1 5 GLN 5 5 5 GLN GLN E . n E 1 6 GLN 6 6 6 GLN GLN E . n E 1 7 HIS 7 7 7 HIS HIS E . n E 1 8 GLN 8 8 8 GLN GLN E . n E 1 9 GLN 9 9 9 GLN GLN E . n E 1 10 GLN 10 10 10 GLN GLN E . n E 1 11 HIS 11 11 11 HIS HIS E . n E 1 12 LEU 12 12 12 LEU LEU E . n E 1 13 GLN 13 13 13 GLN GLN E . n E 1 14 HIS 14 14 14 HIS HIS E . n E 1 15 VAL 15 15 15 VAL VAL E . n E 1 16 GLN 16 16 16 GLN GLN E . n E 1 17 HIS 17 17 17 HIS HIS E . n E 1 18 LEU 18 18 18 LEU LEU E . n E 1 19 GLN 19 19 19 GLN GLN E . n E 1 20 GLN 20 20 20 GLN GLN E . n E 1 21 VAL 21 21 21 VAL VAL E . n E 1 22 GLN 22 22 22 GLN GLN E . n E 1 23 PHE 23 23 23 PHE PHE E . n E 1 24 HIS 24 24 24 HIS HIS E . n E 1 25 GLN 25 25 25 GLN GLN E . n E 1 26 HIS 26 26 26 HIS HIS E . n E 1 27 GLN 27 27 27 GLN GLN E . n E 1 28 GLN 28 28 28 GLN GLN E . n E 1 29 GLN 29 29 29 GLN GLN E . n E 1 30 LEU 30 30 30 LEU LEU E . n E 1 31 SER 31 31 31 SER SER E . n F 1 1 GLN 1 1 1 GLN GLN F . n F 1 2 LEU 2 2 2 LEU LEU F . n F 1 3 HIS 3 3 3 HIS HIS F . n F 1 4 GLN 4 4 4 GLN GLN F . n F 1 5 GLN 5 5 5 GLN GLN F . n F 1 6 GLN 6 6 6 GLN GLN F . n F 1 7 HIS 7 7 7 HIS HIS F . n F 1 8 GLN 8 8 8 GLN GLN F . n F 1 9 GLN 9 9 9 GLN GLN F . n F 1 10 GLN 10 10 10 GLN GLN F . n F 1 11 HIS 11 11 11 HIS HIS F . n F 1 12 LEU 12 12 12 LEU LEU F . n F 1 13 GLN 13 13 13 GLN GLN F . n F 1 14 HIS 14 14 14 HIS HIS F . n F 1 15 VAL 15 15 15 VAL VAL F . n F 1 16 GLN 16 16 16 GLN GLN F . n F 1 17 HIS 17 17 17 HIS HIS F . n F 1 18 LEU 18 18 18 LEU LEU F . n F 1 19 GLN 19 19 19 GLN GLN F . n F 1 20 GLN 20 20 20 GLN GLN F . n F 1 21 VAL 21 21 21 VAL VAL F . n F 1 22 GLN 22 22 22 GLN GLN F . n F 1 23 PHE 23 23 23 PHE PHE F . n F 1 24 HIS 24 24 24 HIS HIS F . n F 1 25 GLN 25 25 25 GLN GLN F . n F 1 26 HIS 26 26 26 HIS HIS F . n F 1 27 GLN 27 27 27 GLN GLN F . n F 1 28 GLN 28 28 28 GLN GLN F . n F 1 29 GLN 29 29 29 GLN GLN F . n F 1 30 LEU 30 30 30 LEU LEU F . n F 1 31 SER 31 31 31 SER SER F . n G 1 1 GLN 1 1 1 GLN GLN G . n G 1 2 LEU 2 2 2 LEU LEU G . n G 1 3 HIS 3 3 3 HIS HIS G . n G 1 4 GLN 4 4 4 GLN GLN G . n G 1 5 GLN 5 5 5 GLN GLN G . n G 1 6 GLN 6 6 6 GLN GLN G . n G 1 7 HIS 7 7 7 HIS HIS G . n G 1 8 GLN 8 8 8 GLN GLN G . n G 1 9 GLN 9 9 9 GLN GLN G . n G 1 10 GLN 10 10 10 GLN GLN G . n G 1 11 HIS 11 11 11 HIS HIS G . n G 1 12 LEU 12 12 12 LEU LEU G . n G 1 13 GLN 13 13 13 GLN GLN G . n G 1 14 HIS 14 14 14 HIS HIS G . n G 1 15 VAL 15 15 15 VAL VAL G . n G 1 16 GLN 16 16 16 GLN GLN G . n G 1 17 HIS 17 17 17 HIS HIS G . n G 1 18 LEU 18 18 18 LEU LEU G . n G 1 19 GLN 19 19 19 GLN GLN G . n G 1 20 GLN 20 20 20 GLN GLN G . n G 1 21 VAL 21 21 21 VAL VAL G . n G 1 22 GLN 22 22 22 GLN GLN G . n G 1 23 PHE 23 23 23 PHE PHE G . n G 1 24 HIS 24 24 24 HIS HIS G . n G 1 25 GLN 25 25 25 GLN GLN G . n G 1 26 HIS 26 26 26 HIS HIS G . n G 1 27 GLN 27 27 27 GLN GLN G . n G 1 28 GLN 28 28 28 GLN GLN G . n G 1 29 GLN 29 29 29 GLN GLN G . n G 1 30 LEU 30 30 30 LEU LEU G . n G 1 31 SER 31 31 31 SER SER G . n H 1 1 GLN 1 1 1 GLN GLN H . n H 1 2 LEU 2 2 2 LEU LEU H . n H 1 3 HIS 3 3 3 HIS HIS H . n H 1 4 GLN 4 4 4 GLN GLN H . n H 1 5 GLN 5 5 5 GLN GLN H . n H 1 6 GLN 6 6 6 GLN GLN H . n H 1 7 HIS 7 7 7 HIS HIS H . n H 1 8 GLN 8 8 8 GLN GLN H . n H 1 9 GLN 9 9 9 GLN GLN H . n H 1 10 GLN 10 10 10 GLN GLN H . n H 1 11 HIS 11 11 11 HIS HIS H . n H 1 12 LEU 12 12 12 LEU LEU H . n H 1 13 GLN 13 13 13 GLN GLN H . n H 1 14 HIS 14 14 14 HIS HIS H . n H 1 15 VAL 15 15 15 VAL VAL H . n H 1 16 GLN 16 16 16 GLN GLN H . n H 1 17 HIS 17 17 17 HIS HIS H . n H 1 18 LEU 18 18 18 LEU LEU H . n H 1 19 GLN 19 19 19 GLN GLN H . n H 1 20 GLN 20 20 20 GLN GLN H . n H 1 21 VAL 21 21 21 VAL VAL H . n H 1 22 GLN 22 22 22 GLN GLN H . n H 1 23 PHE 23 23 23 PHE PHE H . n H 1 24 HIS 24 24 24 HIS HIS H . n H 1 25 GLN 25 25 25 GLN GLN H . n H 1 26 HIS 26 26 26 HIS HIS H . n H 1 27 GLN 27 27 27 GLN GLN H . n H 1 28 GLN 28 28 28 GLN GLN H . n H 1 29 GLN 29 29 29 GLN GLN H . n H 1 30 LEU 30 30 30 LEU LEU H . n H 1 31 SER 31 31 31 SER SER H . n I 1 1 GLN 1 1 1 GLN GLN I . n I 1 2 LEU 2 2 2 LEU LEU I . n I 1 3 HIS 3 3 3 HIS HIS I . n I 1 4 GLN 4 4 4 GLN GLN I . n I 1 5 GLN 5 5 5 GLN GLN I . n I 1 6 GLN 6 6 6 GLN GLN I . n I 1 7 HIS 7 7 7 HIS HIS I . n I 1 8 GLN 8 8 8 GLN GLN I . n I 1 9 GLN 9 9 9 GLN GLN I . n I 1 10 GLN 10 10 10 GLN GLN I . n I 1 11 HIS 11 11 11 HIS HIS I . n I 1 12 LEU 12 12 12 LEU LEU I . n I 1 13 GLN 13 13 13 GLN GLN I . n I 1 14 HIS 14 14 14 HIS HIS I . n I 1 15 VAL 15 15 15 VAL VAL I . n I 1 16 GLN 16 16 16 GLN GLN I . n I 1 17 HIS 17 17 17 HIS HIS I . n I 1 18 LEU 18 18 18 LEU LEU I . n I 1 19 GLN 19 19 19 GLN GLN I . n I 1 20 GLN 20 20 20 GLN GLN I . n I 1 21 VAL 21 21 21 VAL VAL I . n I 1 22 GLN 22 22 22 GLN GLN I . n I 1 23 PHE 23 23 23 PHE PHE I . n I 1 24 HIS 24 24 24 HIS HIS I . n I 1 25 GLN 25 25 25 GLN GLN I . n I 1 26 HIS 26 26 26 HIS HIS I . n I 1 27 GLN 27 27 27 GLN GLN I . n I 1 28 GLN 28 28 28 GLN GLN I . n I 1 29 GLN 29 29 29 GLN GLN I . n I 1 30 LEU 30 30 30 LEU LEU I . n I 1 31 SER 31 31 31 SER SER I . n J 1 1 GLN 1 1 1 GLN GLN J . n J 1 2 LEU 2 2 2 LEU LEU J . n J 1 3 HIS 3 3 3 HIS HIS J . n J 1 4 GLN 4 4 4 GLN GLN J . n J 1 5 GLN 5 5 5 GLN GLN J . n J 1 6 GLN 6 6 6 GLN GLN J . n J 1 7 HIS 7 7 7 HIS HIS J . n J 1 8 GLN 8 8 8 GLN GLN J . n J 1 9 GLN 9 9 9 GLN GLN J . n J 1 10 GLN 10 10 10 GLN GLN J . n J 1 11 HIS 11 11 11 HIS HIS J . n J 1 12 LEU 12 12 12 LEU LEU J . n J 1 13 GLN 13 13 13 GLN GLN J . n J 1 14 HIS 14 14 14 HIS HIS J . n J 1 15 VAL 15 15 15 VAL VAL J . n J 1 16 GLN 16 16 16 GLN GLN J . n J 1 17 HIS 17 17 17 HIS HIS J . n J 1 18 LEU 18 18 18 LEU LEU J . n J 1 19 GLN 19 19 19 GLN GLN J . n J 1 20 GLN 20 20 20 GLN GLN J . n J 1 21 VAL 21 21 21 VAL VAL J . n J 1 22 GLN 22 22 22 GLN GLN J . n J 1 23 PHE 23 23 23 PHE PHE J . n J 1 24 HIS 24 24 24 HIS HIS J . n J 1 25 GLN 25 25 25 GLN GLN J . n J 1 26 HIS 26 26 26 HIS HIS J . n J 1 27 GLN 27 27 27 GLN GLN J . n J 1 28 GLN 28 28 28 GLN GLN J . n J 1 29 GLN 29 29 29 GLN GLN J . n J 1 30 LEU 30 30 30 LEU LEU J . n J 1 31 SER 31 31 31 SER SER J . n K 1 1 GLN 1 1 1 GLN GLN K . n K 1 2 LEU 2 2 2 LEU LEU K . n K 1 3 HIS 3 3 3 HIS HIS K . n K 1 4 GLN 4 4 4 GLN GLN K . n K 1 5 GLN 5 5 5 GLN GLN K . n K 1 6 GLN 6 6 6 GLN GLN K . n K 1 7 HIS 7 7 7 HIS HIS K . n K 1 8 GLN 8 8 8 GLN GLN K . n K 1 9 GLN 9 9 9 GLN GLN K . n K 1 10 GLN 10 10 10 GLN GLN K . n K 1 11 HIS 11 11 11 HIS HIS K . n K 1 12 LEU 12 12 12 LEU LEU K . n K 1 13 GLN 13 13 13 GLN GLN K . n K 1 14 HIS 14 14 14 HIS HIS K . n K 1 15 VAL 15 15 15 VAL VAL K . n K 1 16 GLN 16 16 16 GLN GLN K . n K 1 17 HIS 17 17 17 HIS HIS K . n K 1 18 LEU 18 18 18 LEU LEU K . n K 1 19 GLN 19 19 19 GLN GLN K . n K 1 20 GLN 20 20 20 GLN GLN K . n K 1 21 VAL 21 21 21 VAL VAL K . n K 1 22 GLN 22 22 22 GLN GLN K . n K 1 23 PHE 23 23 23 PHE PHE K . n K 1 24 HIS 24 24 24 HIS HIS K . n K 1 25 GLN 25 25 25 GLN GLN K . n K 1 26 HIS 26 26 26 HIS HIS K . n K 1 27 GLN 27 27 27 GLN GLN K . n K 1 28 GLN 28 28 28 GLN GLN K . n K 1 29 GLN 29 29 29 GLN GLN K . n K 1 30 LEU 30 30 30 LEU LEU K . n K 1 31 SER 31 31 31 SER SER K . n L 1 1 GLN 1 1 1 GLN GLN L . n L 1 2 LEU 2 2 2 LEU LEU L . n L 1 3 HIS 3 3 3 HIS HIS L . n L 1 4 GLN 4 4 4 GLN GLN L . n L 1 5 GLN 5 5 5 GLN GLN L . n L 1 6 GLN 6 6 6 GLN GLN L . n L 1 7 HIS 7 7 7 HIS HIS L . n L 1 8 GLN 8 8 8 GLN GLN L . n L 1 9 GLN 9 9 9 GLN GLN L . n L 1 10 GLN 10 10 10 GLN GLN L . n L 1 11 HIS 11 11 11 HIS HIS L . n L 1 12 LEU 12 12 12 LEU LEU L . n L 1 13 GLN 13 13 13 GLN GLN L . n L 1 14 HIS 14 14 14 HIS HIS L . n L 1 15 VAL 15 15 15 VAL VAL L . n L 1 16 GLN 16 16 16 GLN GLN L . n L 1 17 HIS 17 17 17 HIS HIS L . n L 1 18 LEU 18 18 18 LEU LEU L . n L 1 19 GLN 19 19 19 GLN GLN L . n L 1 20 GLN 20 20 20 GLN GLN L . n L 1 21 VAL 21 21 21 VAL VAL L . n L 1 22 GLN 22 22 22 GLN GLN L . n L 1 23 PHE 23 23 23 PHE PHE L . n L 1 24 HIS 24 24 24 HIS HIS L . n L 1 25 GLN 25 25 25 GLN GLN L . n L 1 26 HIS 26 26 26 HIS HIS L . n L 1 27 GLN 27 27 27 GLN GLN L . n L 1 28 GLN 28 28 28 GLN GLN L . n L 1 29 GLN 29 29 29 GLN GLN L . n L 1 30 LEU 30 30 30 LEU LEU L . n L 1 31 SER 31 31 31 SER SER L . n M 1 1 GLN 1 1 1 GLN GLN M . n M 1 2 LEU 2 2 2 LEU LEU M . n M 1 3 HIS 3 3 3 HIS HIS M . n M 1 4 GLN 4 4 4 GLN GLN M . n M 1 5 GLN 5 5 5 GLN GLN M . n M 1 6 GLN 6 6 6 GLN GLN M . n M 1 7 HIS 7 7 7 HIS HIS M . n M 1 8 GLN 8 8 8 GLN GLN M . n M 1 9 GLN 9 9 9 GLN GLN M . n M 1 10 GLN 10 10 10 GLN GLN M . n M 1 11 HIS 11 11 11 HIS HIS M . n M 1 12 LEU 12 12 12 LEU LEU M . n M 1 13 GLN 13 13 13 GLN GLN M . n M 1 14 HIS 14 14 14 HIS HIS M . n M 1 15 VAL 15 15 15 VAL VAL M . n M 1 16 GLN 16 16 16 GLN GLN M . n M 1 17 HIS 17 17 17 HIS HIS M . n M 1 18 LEU 18 18 18 LEU LEU M . n M 1 19 GLN 19 19 19 GLN GLN M . n M 1 20 GLN 20 20 20 GLN GLN M . n M 1 21 VAL 21 21 21 VAL VAL M . n M 1 22 GLN 22 22 22 GLN GLN M . n M 1 23 PHE 23 23 23 PHE PHE M . n M 1 24 HIS 24 24 24 HIS HIS M . n M 1 25 GLN 25 25 25 GLN GLN M . n M 1 26 HIS 26 26 26 HIS HIS M . n M 1 27 GLN 27 27 27 GLN GLN M . n M 1 28 GLN 28 28 28 GLN GLN M . n M 1 29 GLN 29 29 29 GLN GLN M . n M 1 30 LEU 30 30 30 LEU LEU M . n M 1 31 SER 31 31 31 SER SER M . n N 1 1 GLN 1 1 1 GLN GLN N . n N 1 2 LEU 2 2 2 LEU LEU N . n N 1 3 HIS 3 3 3 HIS HIS N . n N 1 4 GLN 4 4 4 GLN GLN N . n N 1 5 GLN 5 5 5 GLN GLN N . n N 1 6 GLN 6 6 6 GLN GLN N . n N 1 7 HIS 7 7 7 HIS HIS N . n N 1 8 GLN 8 8 8 GLN GLN N . n N 1 9 GLN 9 9 9 GLN GLN N . n N 1 10 GLN 10 10 10 GLN GLN N . n N 1 11 HIS 11 11 11 HIS HIS N . n N 1 12 LEU 12 12 12 LEU LEU N . n N 1 13 GLN 13 13 13 GLN GLN N . n N 1 14 HIS 14 14 14 HIS HIS N . n N 1 15 VAL 15 15 15 VAL VAL N . n N 1 16 GLN 16 16 16 GLN GLN N . n N 1 17 HIS 17 17 17 HIS HIS N . n N 1 18 LEU 18 18 18 LEU LEU N . n N 1 19 GLN 19 19 19 GLN GLN N . n N 1 20 GLN 20 20 20 GLN GLN N . n N 1 21 VAL 21 21 21 VAL VAL N . n N 1 22 GLN 22 22 22 GLN GLN N . n N 1 23 PHE 23 23 23 PHE PHE N . n N 1 24 HIS 24 24 24 HIS HIS N . n N 1 25 GLN 25 25 25 GLN GLN N . n N 1 26 HIS 26 26 26 HIS HIS N . n N 1 27 GLN 27 27 27 GLN GLN N . n N 1 28 GLN 28 28 28 GLN GLN N . n N 1 29 GLN 29 29 29 GLN GLN N . n N 1 30 LEU 30 30 30 LEU LEU N . n N 1 31 SER 31 31 31 SER SER N . n O 1 1 GLN 1 1 1 GLN GLN O . n O 1 2 LEU 2 2 2 LEU LEU O . n O 1 3 HIS 3 3 3 HIS HIS O . n O 1 4 GLN 4 4 4 GLN GLN O . n O 1 5 GLN 5 5 5 GLN GLN O . n O 1 6 GLN 6 6 6 GLN GLN O . n O 1 7 HIS 7 7 7 HIS HIS O . n O 1 8 GLN 8 8 8 GLN GLN O . n O 1 9 GLN 9 9 9 GLN GLN O . n O 1 10 GLN 10 10 10 GLN GLN O . n O 1 11 HIS 11 11 11 HIS HIS O . n O 1 12 LEU 12 12 12 LEU LEU O . n O 1 13 GLN 13 13 13 GLN GLN O . n O 1 14 HIS 14 14 14 HIS HIS O . n O 1 15 VAL 15 15 15 VAL VAL O . n O 1 16 GLN 16 16 16 GLN GLN O . n O 1 17 HIS 17 17 17 HIS HIS O . n O 1 18 LEU 18 18 18 LEU LEU O . n O 1 19 GLN 19 19 19 GLN GLN O . n O 1 20 GLN 20 20 20 GLN GLN O . n O 1 21 VAL 21 21 21 VAL VAL O . n O 1 22 GLN 22 22 22 GLN GLN O . n O 1 23 PHE 23 23 23 PHE PHE O . n O 1 24 HIS 24 24 24 HIS HIS O . n O 1 25 GLN 25 25 25 GLN GLN O . n O 1 26 HIS 26 26 26 HIS HIS O . n O 1 27 GLN 27 27 27 GLN GLN O . n O 1 28 GLN 28 28 28 GLN GLN O . n O 1 29 GLN 29 29 29 GLN GLN O . n O 1 30 LEU 30 30 30 LEU LEU O . n O 1 31 SER 31 31 31 SER SER O . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9PX8 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9PX8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9PX8 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9PX8 _struct.title 'Cryo-EM structure of designed Orb2 amyloid (LVLVF, polymorph 1)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9PX8 _struct_keywords.text 'Polymorph1, Recombinant Protein, Orb2 Amyloid Core, Designed Mutants, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9PX8 _struct_ref.pdbx_db_accession 9PX8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9PX8 A 1 ? 31 ? 9PX8 1 ? 31 ? 1 31 2 1 9PX8 B 1 ? 31 ? 9PX8 1 ? 31 ? 1 31 3 1 9PX8 C 1 ? 31 ? 9PX8 1 ? 31 ? 1 31 4 1 9PX8 D 1 ? 31 ? 9PX8 1 ? 31 ? 1 31 5 1 9PX8 E 1 ? 31 ? 9PX8 1 ? 31 ? 1 31 6 1 9PX8 F 1 ? 31 ? 9PX8 1 ? 31 ? 1 31 7 1 9PX8 G 1 ? 31 ? 9PX8 1 ? 31 ? 1 31 8 1 9PX8 H 1 ? 31 ? 9PX8 1 ? 31 ? 1 31 9 1 9PX8 I 1 ? 31 ? 9PX8 1 ? 31 ? 1 31 10 1 9PX8 J 1 ? 31 ? 9PX8 1 ? 31 ? 1 31 11 1 9PX8 K 1 ? 31 ? 9PX8 1 ? 31 ? 1 31 12 1 9PX8 L 1 ? 31 ? 9PX8 1 ? 31 ? 1 31 13 1 9PX8 M 1 ? 31 ? 9PX8 1 ? 31 ? 1 31 14 1 9PX8 N 1 ? 31 ? 9PX8 1 ? 31 ? 1 31 15 1 9PX8 O 1 ? 31 ? 9PX8 1 ? 31 ? 1 31 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 15-meric _pdbx_struct_assembly.oligomeric_count 15 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 5 ? AA5 ? 5 ? AA6 ? 5 ? AA7 ? 5 ? AA8 ? 5 ? AA9 ? 5 ? AB1 ? 2 ? AB2 ? 5 ? AB3 ? 5 ? AB4 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA5 4 5 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA6 4 5 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA7 4 5 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA8 3 4 ? parallel AA8 4 5 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AA9 3 4 ? parallel AA9 4 5 ? parallel AB1 1 2 ? parallel AB2 1 2 ? parallel AB2 2 3 ? parallel AB2 3 4 ? parallel AB2 4 5 ? parallel AB3 1 2 ? parallel AB3 2 3 ? parallel AB3 3 4 ? parallel AB3 4 5 ? parallel AB4 1 2 ? parallel AB4 2 3 ? parallel AB4 3 4 ? parallel AB4 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 2 ? GLN A 4 ? LEU A 2 GLN A 4 AA1 2 LEU D 2 ? GLN D 4 ? LEU D 2 GLN D 4 AA1 3 LEU G 2 ? GLN G 4 ? LEU G 2 GLN G 4 AA1 4 LEU J 2 ? GLN J 4 ? LEU J 2 GLN J 4 AA1 5 LEU M 2 ? GLN M 4 ? LEU M 2 GLN M 4 AA2 1 HIS A 11 ? VAL A 15 ? HIS A 11 VAL A 15 AA2 2 HIS D 11 ? VAL D 15 ? HIS D 11 VAL D 15 AA2 3 HIS G 11 ? VAL G 15 ? HIS G 11 VAL G 15 AA2 4 HIS J 11 ? VAL J 15 ? HIS J 11 VAL J 15 AA2 5 HIS M 11 ? VAL M 15 ? HIS M 11 VAL M 15 AA3 1 LEU A 18 ? VAL A 21 ? LEU A 18 VAL A 21 AA3 2 LEU D 18 ? PHE D 23 ? LEU D 18 PHE D 23 AA3 3 LEU G 18 ? PHE G 23 ? LEU G 18 PHE G 23 AA3 4 LEU J 18 ? PHE J 23 ? LEU J 18 PHE J 23 AA3 5 LEU M 18 ? PHE M 23 ? LEU M 18 PHE M 23 AA4 1 GLN A 28 ? GLN A 29 ? GLN A 28 GLN A 29 AA4 2 GLN D 28 ? GLN D 29 ? GLN D 28 GLN D 29 AA4 3 GLN G 28 ? GLN G 29 ? GLN G 28 GLN G 29 AA4 4 GLN J 28 ? GLN J 29 ? GLN J 28 GLN J 29 AA4 5 GLN M 28 ? GLN M 29 ? GLN M 28 GLN M 29 AA5 1 LEU B 2 ? GLN B 4 ? LEU B 2 GLN B 4 AA5 2 LEU E 2 ? GLN E 4 ? LEU E 2 GLN E 4 AA5 3 LEU H 2 ? GLN H 4 ? LEU H 2 GLN H 4 AA5 4 LEU K 2 ? GLN K 4 ? LEU K 2 GLN K 4 AA5 5 LEU N 2 ? GLN N 4 ? LEU N 2 GLN N 4 AA6 1 HIS B 11 ? LEU B 12 ? HIS B 11 LEU B 12 AA6 2 HIS E 11 ? LEU E 12 ? HIS E 11 LEU E 12 AA6 3 HIS H 11 ? VAL H 15 ? HIS H 11 VAL H 15 AA6 4 HIS K 11 ? VAL K 15 ? HIS K 11 VAL K 15 AA6 5 HIS N 11 ? VAL N 15 ? HIS N 11 VAL N 15 AA7 1 LEU B 18 ? VAL B 21 ? LEU B 18 VAL B 21 AA7 2 LEU E 18 ? VAL E 21 ? LEU E 18 VAL E 21 AA7 3 LEU H 18 ? VAL H 21 ? LEU H 18 VAL H 21 AA7 4 LEU K 18 ? PHE K 23 ? LEU K 18 PHE K 23 AA7 5 VAL N 21 ? PHE N 23 ? VAL N 21 PHE N 23 AA8 1 GLN B 28 ? GLN B 29 ? GLN B 28 GLN B 29 AA8 2 GLN E 28 ? GLN E 29 ? GLN E 28 GLN E 29 AA8 3 GLN H 28 ? GLN H 29 ? GLN H 28 GLN H 29 AA8 4 GLN K 28 ? GLN K 29 ? GLN K 28 GLN K 29 AA8 5 GLN N 28 ? GLN N 29 ? GLN N 28 GLN N 29 AA9 1 LEU C 2 ? GLN C 4 ? LEU C 2 GLN C 4 AA9 2 LEU F 2 ? GLN F 4 ? LEU F 2 GLN F 4 AA9 3 LEU I 2 ? GLN I 4 ? LEU I 2 GLN I 4 AA9 4 LEU L 2 ? GLN L 4 ? LEU L 2 GLN L 4 AA9 5 LEU O 2 ? GLN O 4 ? LEU O 2 GLN O 4 AB1 1 HIS C 7 ? GLN C 8 ? HIS C 7 GLN C 8 AB1 2 HIS F 7 ? GLN F 8 ? HIS F 7 GLN F 8 AB2 1 HIS C 11 ? LEU C 12 ? HIS C 11 LEU C 12 AB2 2 HIS F 11 ? VAL F 15 ? HIS F 11 VAL F 15 AB2 3 HIS I 11 ? VAL I 15 ? HIS I 11 VAL I 15 AB2 4 HIS L 11 ? VAL L 15 ? HIS L 11 VAL L 15 AB2 5 HIS O 11 ? VAL O 15 ? HIS O 11 VAL O 15 AB3 1 LEU C 18 ? PHE C 23 ? LEU C 18 PHE C 23 AB3 2 LEU F 18 ? PHE F 23 ? LEU F 18 PHE F 23 AB3 3 LEU I 18 ? PHE I 23 ? LEU I 18 PHE I 23 AB3 4 LEU L 18 ? PHE L 23 ? LEU L 18 PHE L 23 AB3 5 VAL O 21 ? PHE O 23 ? VAL O 21 PHE O 23 AB4 1 GLN C 28 ? GLN C 29 ? GLN C 28 GLN C 29 AB4 2 GLN F 28 ? GLN F 29 ? GLN F 28 GLN F 29 AB4 3 HIS I 26 ? GLN I 29 ? HIS I 26 GLN I 29 AB4 4 HIS L 26 ? GLN L 29 ? HIS L 26 GLN L 29 AB4 5 HIS O 26 ? GLN O 29 ? HIS O 26 GLN O 29 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N HIS A 3 ? N HIS A 3 O LEU D 2 ? O LEU D 2 AA1 2 3 N HIS D 3 ? N HIS D 3 O LEU G 2 ? O LEU G 2 AA1 3 4 N HIS G 3 ? N HIS G 3 O LEU J 2 ? O LEU J 2 AA1 4 5 N HIS J 3 ? N HIS J 3 O LEU M 2 ? O LEU M 2 AA2 1 2 N HIS A 11 ? N HIS A 11 O LEU D 12 ? O LEU D 12 AA2 2 3 N HIS D 11 ? N HIS D 11 O LEU G 12 ? O LEU G 12 AA2 3 4 N HIS G 11 ? N HIS G 11 O LEU J 12 ? O LEU J 12 AA2 4 5 N HIS J 11 ? N HIS J 11 O LEU M 12 ? O LEU M 12 AA3 1 2 N GLN A 20 ? N GLN A 20 O VAL D 21 ? O VAL D 21 AA3 2 3 N GLN D 20 ? N GLN D 20 O VAL G 21 ? O VAL G 21 AA3 3 4 N GLN G 20 ? N GLN G 20 O VAL J 21 ? O VAL J 21 AA3 4 5 N GLN J 20 ? N GLN J 20 O VAL M 21 ? O VAL M 21 AA4 1 2 N GLN A 28 ? N GLN A 28 O GLN D 29 ? O GLN D 29 AA4 2 3 N GLN D 28 ? N GLN D 28 O GLN G 29 ? O GLN G 29 AA4 3 4 N GLN G 28 ? N GLN G 28 O GLN J 29 ? O GLN J 29 AA4 4 5 N GLN J 28 ? N GLN J 28 O GLN M 29 ? O GLN M 29 AA5 1 2 N HIS B 3 ? N HIS B 3 O LEU E 2 ? O LEU E 2 AA5 2 3 N HIS E 3 ? N HIS E 3 O LEU H 2 ? O LEU H 2 AA5 3 4 N HIS H 3 ? N HIS H 3 O LEU K 2 ? O LEU K 2 AA5 4 5 N HIS K 3 ? N HIS K 3 O LEU N 2 ? O LEU N 2 AA6 1 2 N HIS B 11 ? N HIS B 11 O LEU E 12 ? O LEU E 12 AA6 2 3 N HIS E 11 ? N HIS E 11 O LEU H 12 ? O LEU H 12 AA6 3 4 N HIS H 11 ? N HIS H 11 O LEU K 12 ? O LEU K 12 AA6 4 5 N HIS K 11 ? N HIS K 11 O LEU N 12 ? O LEU N 12 AA7 1 2 N GLN B 20 ? N GLN B 20 O VAL E 21 ? O VAL E 21 AA7 2 3 N GLN E 20 ? N GLN E 20 O VAL H 21 ? O VAL H 21 AA7 3 4 N GLN H 20 ? N GLN H 20 O VAL K 21 ? O VAL K 21 AA7 4 5 N GLN K 20 ? N GLN K 20 O VAL N 21 ? O VAL N 21 AA8 1 2 N GLN B 28 ? N GLN B 28 O GLN E 29 ? O GLN E 29 AA8 2 3 N GLN E 28 ? N GLN E 28 O GLN H 29 ? O GLN H 29 AA8 3 4 N GLN H 28 ? N GLN H 28 O GLN K 29 ? O GLN K 29 AA8 4 5 N GLN K 28 ? N GLN K 28 O GLN N 29 ? O GLN N 29 AA9 1 2 N HIS C 3 ? N HIS C 3 O LEU F 2 ? O LEU F 2 AA9 2 3 N HIS F 3 ? N HIS F 3 O LEU I 2 ? O LEU I 2 AA9 3 4 N HIS I 3 ? N HIS I 3 O LEU L 2 ? O LEU L 2 AA9 4 5 N HIS L 3 ? N HIS L 3 O LEU O 2 ? O LEU O 2 AB1 1 2 N HIS C 7 ? N HIS C 7 O GLN F 8 ? O GLN F 8 AB2 1 2 N HIS C 11 ? N HIS C 11 O LEU F 12 ? O LEU F 12 AB2 2 3 N HIS F 11 ? N HIS F 11 O LEU I 12 ? O LEU I 12 AB2 3 4 N HIS I 11 ? N HIS I 11 O LEU L 12 ? O LEU L 12 AB2 4 5 N HIS L 11 ? N HIS L 11 O LEU O 12 ? O LEU O 12 AB3 1 2 N GLN C 22 ? N GLN C 22 O PHE F 23 ? O PHE F 23 AB3 2 3 N GLN F 22 ? N GLN F 22 O VAL I 21 ? O VAL I 21 AB3 3 4 N GLN I 22 ? N GLN I 22 O VAL L 21 ? O VAL L 21 AB3 4 5 N GLN L 22 ? N GLN L 22 O VAL O 21 ? O VAL O 21 AB4 1 2 N GLN C 28 ? N GLN C 28 O GLN F 29 ? O GLN F 29 AB4 2 3 N GLN F 28 ? N GLN F 28 O GLN I 29 ? O GLN I 29 AB4 3 4 N GLN I 28 ? N GLN I 28 O GLN L 27 ? O GLN L 27 AB4 4 5 N GLN L 28 ? N GLN L 28 O GLN O 29 ? O GLN O 29 # _pdbx_entry_details.entry_id 9PX8 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN C 27 ? ? -172.15 142.53 2 1 GLN F 27 ? ? -170.77 137.07 3 1 GLN H 27 ? ? -172.11 143.29 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9PX8 _em_3d_fitting.method ? _em_3d_fitting.target_criteria 'Cross Correlation Coefficient' _em_3d_fitting.details 'Initial model fitting was performed using Coot and Phenix, with final adjustments completed in ChimeraX.' _em_3d_fitting.overall_b_value 5817 _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id . _em_3d_fitting_list.pdb_chain_id . _em_3d_fitting_list.pdb_chain_residue_range . _em_3d_fitting_list.details ;Initial model generated automatically using ModelAngelo from the experimental cryo-EM map. Model was further manually inspected and refined using Coot and Phenix. ; _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name Other _em_3d_fitting_list.type 'in silico model' _em_3d_fitting_list.accession_code ? _em_3d_fitting_list.initial_refinement_model_id ? # _em_3d_reconstruction.entry_id 9PX8 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 58092 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 3 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '10mM HEPES, 75mM NaCl, 2% glycerol, 2mM MgCl2, 10mM KCl' _em_buffer.pH 7.15 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Cryo-EM structure of designed Orb2 amyloid (LVLVF; polymorph 1)' _em_entity_assembly.details 'Orb2 Amyloid peptide are chemically synthesized.' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9PX8 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2400 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 50 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9PX8 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 95 _em_vitrification.temp ? _em_vitrification.chamber_temperature 291.15 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'Vitrification Carried out in liquid Nitrogen atmosphere' # _em_experiment.entry_id 9PX8 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9PX8 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal GLN N N N N 1 GLN CA C N S 2 GLN C C N N 3 GLN O O N N 4 GLN CB C N N 5 GLN CG C N N 6 GLN CD C N N 7 GLN OE1 O N N 8 GLN NE2 N N N 9 GLN OXT O N N 10 GLN H H N N 11 GLN H2 H N N 12 GLN HA H N N 13 GLN HB2 H N N 14 GLN HB3 H N N 15 GLN HG2 H N N 16 GLN HG3 H N N 17 GLN HE21 H N N 18 GLN HE22 H N N 19 GLN HXT H N N 20 HIS N N N N 21 HIS CA C N S 22 HIS C C N N 23 HIS O O N N 24 HIS CB C N N 25 HIS CG C Y N 26 HIS ND1 N Y N 27 HIS CD2 C Y N 28 HIS CE1 C Y N 29 HIS NE2 N Y N 30 HIS OXT O N N 31 HIS H H N N 32 HIS H2 H N N 33 HIS HA H N N 34 HIS HB2 H N N 35 HIS HB3 H N N 36 HIS HD1 H N N 37 HIS HD2 H N N 38 HIS HE1 H N N 39 HIS HE2 H N N 40 HIS HXT H N N 41 LEU N N N N 42 LEU CA C N S 43 LEU C C N N 44 LEU O O N N 45 LEU CB C N N 46 LEU CG C N N 47 LEU CD1 C N N 48 LEU CD2 C N N 49 LEU OXT O N N 50 LEU H H N N 51 LEU H2 H N N 52 LEU HA H N N 53 LEU HB2 H N N 54 LEU HB3 H N N 55 LEU HG H N N 56 LEU HD11 H N N 57 LEU HD12 H N N 58 LEU HD13 H N N 59 LEU HD21 H N N 60 LEU HD22 H N N 61 LEU HD23 H N N 62 LEU HXT H N N 63 PHE N N N N 64 PHE CA C N S 65 PHE C C N N 66 PHE O O N N 67 PHE CB C N N 68 PHE CG C Y N 69 PHE CD1 C Y N 70 PHE CD2 C Y N 71 PHE CE1 C Y N 72 PHE CE2 C Y N 73 PHE CZ C Y N 74 PHE OXT O N N 75 PHE H H N N 76 PHE H2 H N N 77 PHE HA H N N 78 PHE HB2 H N N 79 PHE HB3 H N N 80 PHE HD1 H N N 81 PHE HD2 H N N 82 PHE HE1 H N N 83 PHE HE2 H N N 84 PHE HZ H N N 85 PHE HXT H N N 86 SER N N N N 87 SER CA C N S 88 SER C C N N 89 SER O O N N 90 SER CB C N N 91 SER OG O N N 92 SER OXT O N N 93 SER H H N N 94 SER H2 H N N 95 SER HA H N N 96 SER HB2 H N N 97 SER HB3 H N N 98 SER HG H N N 99 SER HXT H N N 100 VAL N N N N 101 VAL CA C N S 102 VAL C C N N 103 VAL O O N N 104 VAL CB C N N 105 VAL CG1 C N N 106 VAL CG2 C N N 107 VAL OXT O N N 108 VAL H H N N 109 VAL H2 H N N 110 VAL HA H N N 111 VAL HB H N N 112 VAL HG11 H N N 113 VAL HG12 H N N 114 VAL HG13 H N N 115 VAL HG21 H N N 116 VAL HG22 H N N 117 VAL HG23 H N N 118 VAL HXT H N N 119 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLN N CA sing N N 1 GLN N H sing N N 2 GLN N H2 sing N N 3 GLN CA C sing N N 4 GLN CA CB sing N N 5 GLN CA HA sing N N 6 GLN C O doub N N 7 GLN C OXT sing N N 8 GLN CB CG sing N N 9 GLN CB HB2 sing N N 10 GLN CB HB3 sing N N 11 GLN CG CD sing N N 12 GLN CG HG2 sing N N 13 GLN CG HG3 sing N N 14 GLN CD OE1 doub N N 15 GLN CD NE2 sing N N 16 GLN NE2 HE21 sing N N 17 GLN NE2 HE22 sing N N 18 GLN OXT HXT sing N N 19 HIS N CA sing N N 20 HIS N H sing N N 21 HIS N H2 sing N N 22 HIS CA C sing N N 23 HIS CA CB sing N N 24 HIS CA HA sing N N 25 HIS C O doub N N 26 HIS C OXT sing N N 27 HIS CB CG sing N N 28 HIS CB HB2 sing N N 29 HIS CB HB3 sing N N 30 HIS CG ND1 sing Y N 31 HIS CG CD2 doub Y N 32 HIS ND1 CE1 doub Y N 33 HIS ND1 HD1 sing N N 34 HIS CD2 NE2 sing Y N 35 HIS CD2 HD2 sing N N 36 HIS CE1 NE2 sing Y N 37 HIS CE1 HE1 sing N N 38 HIS NE2 HE2 sing N N 39 HIS OXT HXT sing N N 40 LEU N CA sing N N 41 LEU N H sing N N 42 LEU N H2 sing N N 43 LEU CA C sing N N 44 LEU CA CB sing N N 45 LEU CA HA sing N N 46 LEU C O doub N N 47 LEU C OXT sing N N 48 LEU CB CG sing N N 49 LEU CB HB2 sing N N 50 LEU CB HB3 sing N N 51 LEU CG CD1 sing N N 52 LEU CG CD2 sing N N 53 LEU CG HG sing N N 54 LEU CD1 HD11 sing N N 55 LEU CD1 HD12 sing N N 56 LEU CD1 HD13 sing N N 57 LEU CD2 HD21 sing N N 58 LEU CD2 HD22 sing N N 59 LEU CD2 HD23 sing N N 60 LEU OXT HXT sing N N 61 PHE N CA sing N N 62 PHE N H sing N N 63 PHE N H2 sing N N 64 PHE CA C sing N N 65 PHE CA CB sing N N 66 PHE CA HA sing N N 67 PHE C O doub N N 68 PHE C OXT sing N N 69 PHE CB CG sing N N 70 PHE CB HB2 sing N N 71 PHE CB HB3 sing N N 72 PHE CG CD1 doub Y N 73 PHE CG CD2 sing Y N 74 PHE CD1 CE1 sing Y N 75 PHE CD1 HD1 sing N N 76 PHE CD2 CE2 doub Y N 77 PHE CD2 HD2 sing N N 78 PHE CE1 CZ doub Y N 79 PHE CE1 HE1 sing N N 80 PHE CE2 CZ sing Y N 81 PHE CE2 HE2 sing N N 82 PHE CZ HZ sing N N 83 PHE OXT HXT sing N N 84 SER N CA sing N N 85 SER N H sing N N 86 SER N H2 sing N N 87 SER CA C sing N N 88 SER CA CB sing N N 89 SER CA HA sing N N 90 SER C O doub N N 91 SER C OXT sing N N 92 SER CB OG sing N N 93 SER CB HB2 sing N N 94 SER CB HB3 sing N N 95 SER OG HG sing N N 96 SER OXT HXT sing N N 97 VAL N CA sing N N 98 VAL N H sing N N 99 VAL N H2 sing N N 100 VAL CA C sing N N 101 VAL CA CB sing N N 102 VAL CA HA sing N N 103 VAL C O doub N N 104 VAL C OXT sing N N 105 VAL CB CG1 sing N N 106 VAL CB CG2 sing N N 107 VAL CB HB sing N N 108 VAL CG1 HG11 sing N N 109 VAL CG1 HG12 sing N N 110 VAL CG1 HG13 sing N N 111 VAL CG2 HG21 sing N N 112 VAL CG2 HG22 sing N N 113 VAL CG2 HG23 sing N N 114 VAL OXT HXT sing N N 115 # _em_admin.current_status REL _em_admin.deposition_date 2025-08-05 _em_admin.deposition_site RCSB _em_admin.entry_id 9PX8 _em_admin.last_update 2026-08-12 _em_admin.map_release_date 2026-08-12 _em_admin.title 'Cryo-EM structure of designed Orb2 amyloid (LVLVF; polymorph 1)' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 10 mM C8H18N2O4S 1 HEPES 1 75 mM NaCl 2 'Sodium Chloride' 1 20 mg/ml C3H8O3 3 Glycerol 1 2 mM MgCl2 4 'Magnesium Chloride' 1 10 mM KCl 5 'Potassium Chloride' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 4 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 7227 _em_entity_assembly_naturalsource.organism 'Drosophila melanogaster' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 6.25 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TFS FALCON 4i (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 5994 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 10 _em_imaging_optics.energyfilter_name 'TFS Selectris' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 2713980 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' GUI 1 1 ? ? RELION 5.0-Beta-1 ? 'IMAGE ACQUISITION' ? 2 ? ? 1 SerialEM 4.0 ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' GUI 4 1 ? ? CTFFIND ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot 0.9.8.96 ? OTHER ? 8 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? PHENIX 1.21 ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 5.0-beta-1-commit-b75b38 ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? RELION 5.0-beta-1-commit-b75b38 ? CLASSIFICATION ? 12 1 ? ? RELION 5.0-beta-1-commit-b75b38 ? RECONSTRUCTION ? 13 1 ? ? RELION 5.0-beta-1-commit-b75b38 ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration 0.5 _em_specimen.details Homogenous _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Chan Zuckerberg Initiative' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number CP2-1-0000000296 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9PX8 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_ #