HEADER VIRAL PROTEIN 08-AUG-25 9PYW TITLE SARS-COV-2 NSP7, NSP8 AND NSP12 BOUND TO A PRIMER-TEMPLATE PAIR WITH TITLE 2 INCORPORATED ARA-UMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE NSP12; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL,RDRP,NON-STRUCTURAL PROTEIN 12,NSP12; COMPND 5 EC: 2.7.7.48,2.7.7.50; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NON-STRUCTURAL PROTEIN 8; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: NSP8; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: NON-STRUCTURAL PROTEIN 7; COMPND 14 CHAIN: C; COMPND 15 SYNONYM: NSP7; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: PRIMER RNA; COMPND 19 CHAIN: P; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 5; COMPND 22 MOLECULE: TEMPLATE RNA; COMPND 23 CHAIN: T; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 10 2; SOURCE 11 ORGANISM_TAXID: 2697049; SOURCE 12 GENE: REP, 1A-1B; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 17 2; SOURCE 18 ORGANISM_TAXID: 2697049; SOURCE 19 GENE: REP, 1A-1B; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 MOL_ID: 4; SOURCE 23 SYNTHETIC: YES; SOURCE 24 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 25 2; SOURCE 26 ORGANISM_TAXID: 2697049; SOURCE 27 MOL_ID: 5; SOURCE 28 SYNTHETIC: YES; SOURCE 29 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 30 2; SOURCE 31 ORGANISM_TAXID: 2697049 KEYWDS RNA-DEPENDENT RNA POLYMERASE (RDRP), VIRAL RNA SYNTHESIS, ARABINOSE KEYWDS 2 UTP, NSP7, NSP8, NSP12, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Z.XIAO,R.N.KIRCHDEORFER REVDAT 1 17-SEP-25 9PYW 0 JRNL AUTH Z.XIAO,A.DAS,A.JAIN,T.K.ANDERSON,C.E.CAMERON,J.J.ARNOLD, JRNL AUTH 2 D.DULIN,R.N.KIRCHDOERFER JRNL TITL THE 2'-ENDO CONFORMATION OF ARABINOSE-CTP AND ARABINOSE-UTP JRNL TITL 2 INHIBIT VIRAL POLYMERASES BY INDUCING LONG PAUSES. JRNL REF BIORXIV 2025 JRNL REFN ISSN 2692-8205 JRNL PMID 40909592 JRNL DOI 10.1101/2025.08.26.672356 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, PHENIX, EPU, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 9BLF REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 621798 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9PYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1000296630. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SARS-COV-2 NSP7, NSP8 AND NSP12 REMARK 245 BOUND TO A PRIMER-TEMPLATE PAIR REMARK 245 WITH INCORPORATED ARA-UMP; RNA- REMARK 245 DEPENDENT RNA POLYMERASE; REMARK 245 REPLICATION FACTORS OF RNA- REMARK 245 DEPENDENT RNA POLYMERASE; RNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 8.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 3479 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 VAL A 930 REMARK 465 LEU A 931 REMARK 465 GLN A 932 REMARK 465 GLU A 933 REMARK 465 ASN A 934 REMARK 465 LEU A 935 REMARK 465 TYR A 936 REMARK 465 PHE A 937 REMARK 465 GLN A 938 REMARK 465 GLY A 939 REMARK 465 SER A 940 REMARK 465 TRP A 941 REMARK 465 SER A 942 REMARK 465 HIS A 943 REMARK 465 PRO A 944 REMARK 465 GLN A 945 REMARK 465 PHE A 946 REMARK 465 GLU A 947 REMARK 465 LYS A 948 REMARK 465 GLY A 949 REMARK 465 GLY A 950 REMARK 465 SER A 951 REMARK 465 GLY A 952 REMARK 465 SER A 953 REMARK 465 SER A 954 REMARK 465 TRP A 955 REMARK 465 SER A 956 REMARK 465 HIS A 957 REMARK 465 PRO A 958 REMARK 465 GLN A 959 REMARK 465 PHE A 960 REMARK 465 GLU A 961 REMARK 465 LYS A 962 REMARK 465 GLY B 0 REMARK 465 ALA B 1 REMARK 465 ILE B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 GLU B 5 REMARK 465 PHE B 6 REMARK 465 SER B 7 REMARK 465 SER B 8 REMARK 465 LEU B 9 REMARK 465 ASN B 192 REMARK 465 SER B 193 REMARK 465 ALA B 194 REMARK 465 VAL B 195 REMARK 465 LYS B 196 REMARK 465 LEU B 197 REMARK 465 GLN B 198 REMARK 465 GLY C 0 REMARK 465 GLU C 74 REMARK 465 MET C 75 REMARK 465 LEU C 76 REMARK 465 ASP C 77 REMARK 465 ASN C 78 REMARK 465 ARG C 79 REMARK 465 ALA C 80 REMARK 465 THR C 81 REMARK 465 LEU C 82 REMARK 465 GLN C 83 REMARK 465 GLY D 0 REMARK 465 ALA D 1 REMARK 465 ILE D 2 REMARK 465 ALA D 3 REMARK 465 SER D 4 REMARK 465 GLU D 5 REMARK 465 PHE D 6 REMARK 465 SER D 193 REMARK 465 ALA D 194 REMARK 465 VAL D 195 REMARK 465 LYS D 196 REMARK 465 LEU D 197 REMARK 465 GLN D 198 REMARK 465 C P 1 REMARK 465 A P 2 REMARK 465 U P 3 REMARK 465 U T 1 REMARK 465 U T 2 REMARK 465 U T 3 REMARK 465 U T 4 REMARK 465 A T 36 REMARK 465 U T 37 REMARK 465 G T 38 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 183 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 197 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 624 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 640 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 726 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 889 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 914 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 80 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 190 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG D 57 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG D 96 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 UAR P 30 O3' - P - OP2 ANGL. DEV. = 8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 133 52.14 -117.15 REMARK 500 ASN A 138 30.96 -141.17 REMARK 500 THR A 259 52.45 33.17 REMARK 500 ASP A 358 45.07 -105.65 REMARK 500 VAL A 398 -60.51 -91.43 REMARK 500 TYR A 456 8.31 -67.64 REMARK 500 ASP A 499 48.83 -90.54 REMARK 500 SER A 607 -126.52 46.68 REMARK 500 LEU A 663 -71.20 -112.43 REMARK 500 SER A 759 -129.76 54.87 REMARK 500 SER A 904 12.02 59.55 REMARK 500 ASP B 30 -128.67 43.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 295 ND1 REMARK 620 2 CYS A 301 SG 104.4 REMARK 620 3 CYS A 306 SG 106.7 99.7 REMARK 620 4 CYS A 310 SG 120.2 109.3 114.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 487 SG REMARK 620 2 HIS A 642 ND1 113.5 REMARK 620 3 CYS A 645 SG 107.3 97.7 REMARK 620 4 CYS A 646 SG 112.0 119.0 105.3 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9BLF RELATED DB: PDB REMARK 900 RELATED ID: 9PZ0 RELATED DB: PDB REMARK 900 SARS-COV-2 NSP7, NSP8 AND NSP12 BOUND TO A PRIMER-TEMPLATE PAIR REMARK 900 RELATED ID: 9PYZ RELATED DB: PDB REMARK 900 SARS-COV-2 NSP7, NSP8 AND NSP12 BOUND TO A PRIMER-TEMPLATE PAIR REMARK 900 WITH INCORPORATED ARA-UMP AND UTP REMARK 900 RELATED ID: EMD-72038 RELATED DB: EMDB REMARK 900 SARS-COV-2 NSP7, NSP8 AND NSP12 BOUND TO A PRIMER-TEMPLATE PAIR REMARK 900 WITH INCORPORATED ARA-UMP DBREF 9PYW A 1 932 UNP P0DTD1 R1AB_SARS2 4393 5324 DBREF 9PYW B 1 198 UNP P0DTD1 R1AB_SARS2 3943 4140 DBREF 9PYW C 1 83 UNP P0DTD1 R1AB_SARS2 3860 3942 DBREF 9PYW D 1 198 UNP P0DTD1 R1AB_SARS2 3943 4140 DBREF 9PYW P 1 30 PDB 9PYW 9PYW 1 30 DBREF 9PYW T 1 38 PDB 9PYW 9PYW 1 38 SEQADV 9PYW MET A -1 UNP P0DTD1 INITIATING METHIONINE SEQADV 9PYW GLY A 0 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW GLU A 933 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW ASN A 934 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW LEU A 935 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW TYR A 936 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW PHE A 937 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW GLN A 938 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW GLY A 939 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW SER A 940 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW TRP A 941 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW SER A 942 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW HIS A 943 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW PRO A 944 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW GLN A 945 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW PHE A 946 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW GLU A 947 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW LYS A 948 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW GLY A 949 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW GLY A 950 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW SER A 951 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW GLY A 952 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW SER A 953 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW SER A 954 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW TRP A 955 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW SER A 956 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW HIS A 957 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW PRO A 958 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW GLN A 959 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW PHE A 960 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW GLU A 961 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW LYS A 962 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW GLY B 0 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW GLY C 0 UNP P0DTD1 EXPRESSION TAG SEQADV 9PYW GLY D 0 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 964 MET GLY SER ALA ASP ALA GLN SER PHE LEU ASN ARG VAL SEQRES 2 A 964 CYS GLY VAL SER ALA ALA ARG LEU THR PRO CYS GLY THR SEQRES 3 A 964 GLY THR SER THR ASP VAL VAL TYR ARG ALA PHE ASP ILE SEQRES 4 A 964 TYR ASN ASP LYS VAL ALA GLY PHE ALA LYS PHE LEU LYS SEQRES 5 A 964 THR ASN CYS CYS ARG PHE GLN GLU LYS ASP GLU ASP ASP SEQRES 6 A 964 ASN LEU ILE ASP SER TYR PHE VAL VAL LYS ARG HIS THR SEQRES 7 A 964 PHE SER ASN TYR GLN HIS GLU GLU THR ILE TYR ASN LEU SEQRES 8 A 964 LEU LYS ASP CYS PRO ALA VAL ALA LYS HIS ASP PHE PHE SEQRES 9 A 964 LYS PHE ARG ILE ASP GLY ASP MET VAL PRO HIS ILE SER SEQRES 10 A 964 ARG GLN ARG LEU THR LYS TYR THR MET ALA ASP LEU VAL SEQRES 11 A 964 TYR ALA LEU ARG HIS PHE ASP GLU GLY ASN CYS ASP THR SEQRES 12 A 964 LEU LYS GLU ILE LEU VAL THR TYR ASN CYS CYS ASP ASP SEQRES 13 A 964 ASP TYR PHE ASN LYS LYS ASP TRP TYR ASP PHE VAL GLU SEQRES 14 A 964 ASN PRO ASP ILE LEU ARG VAL TYR ALA ASN LEU GLY GLU SEQRES 15 A 964 ARG VAL ARG GLN ALA LEU LEU LYS THR VAL GLN PHE CYS SEQRES 16 A 964 ASP ALA MET ARG ASN ALA GLY ILE VAL GLY VAL LEU THR SEQRES 17 A 964 LEU ASP ASN GLN ASP LEU ASN GLY ASN TRP TYR ASP PHE SEQRES 18 A 964 GLY ASP PHE ILE GLN THR THR PRO GLY SER GLY VAL PRO SEQRES 19 A 964 VAL VAL ASP SER TYR TYR SER LEU LEU MET PRO ILE LEU SEQRES 20 A 964 THR LEU THR ARG ALA LEU THR ALA GLU SER HIS VAL ASP SEQRES 21 A 964 THR ASP LEU THR LYS PRO TYR ILE LYS TRP ASP LEU LEU SEQRES 22 A 964 LYS TYR ASP PHE THR GLU GLU ARG LEU LYS LEU PHE ASP SEQRES 23 A 964 ARG TYR PHE LYS TYR TRP ASP GLN THR TYR HIS PRO ASN SEQRES 24 A 964 CYS VAL ASN CYS LEU ASP ASP ARG CYS ILE LEU HIS CYS SEQRES 25 A 964 ALA ASN PHE ASN VAL LEU PHE SER THR VAL PHE PRO PRO SEQRES 26 A 964 THR SER PHE GLY PRO LEU VAL ARG LYS ILE PHE VAL ASP SEQRES 27 A 964 GLY VAL PRO PHE VAL VAL SER THR GLY TYR HIS PHE ARG SEQRES 28 A 964 GLU LEU GLY VAL VAL HIS ASN GLN ASP VAL ASN LEU HIS SEQRES 29 A 964 SER SER ARG LEU SER PHE LYS GLU LEU LEU VAL TYR ALA SEQRES 30 A 964 ALA ASP PRO ALA MET HIS ALA ALA SER GLY ASN LEU LEU SEQRES 31 A 964 LEU ASP LYS ARG THR THR CYS PHE SER VAL ALA ALA LEU SEQRES 32 A 964 THR ASN ASN VAL ALA PHE GLN THR VAL LYS PRO GLY ASN SEQRES 33 A 964 PHE ASN LYS ASP PHE TYR ASP PHE ALA VAL SER LYS GLY SEQRES 34 A 964 PHE PHE LYS GLU GLY SER SER VAL GLU LEU LYS HIS PHE SEQRES 35 A 964 PHE PHE ALA GLN ASP GLY ASN ALA ALA ILE SER ASP TYR SEQRES 36 A 964 ASP TYR TYR ARG TYR ASN LEU PRO THR MET CYS ASP ILE SEQRES 37 A 964 ARG GLN LEU LEU PHE VAL VAL GLU VAL VAL ASP LYS TYR SEQRES 38 A 964 PHE ASP CYS TYR ASP GLY GLY CYS ILE ASN ALA ASN GLN SEQRES 39 A 964 VAL ILE VAL ASN ASN LEU ASP LYS SER ALA GLY PHE PRO SEQRES 40 A 964 PHE ASN LYS TRP GLY LYS ALA ARG LEU TYR TYR ASP SER SEQRES 41 A 964 MET SER TYR GLU ASP GLN ASP ALA LEU PHE ALA TYR THR SEQRES 42 A 964 LYS ARG ASN VAL ILE PRO THR ILE THR GLN MET ASN LEU SEQRES 43 A 964 LYS TYR ALA ILE SER ALA LYS ASN ARG ALA ARG THR VAL SEQRES 44 A 964 ALA GLY VAL SER ILE CYS SER THR MET THR ASN ARG GLN SEQRES 45 A 964 PHE HIS GLN LYS LEU LEU LYS SER ILE ALA ALA THR ARG SEQRES 46 A 964 GLY ALA THR VAL VAL ILE GLY THR SER LYS PHE TYR GLY SEQRES 47 A 964 GLY TRP HIS ASN MET LEU LYS THR VAL TYR SER ASP VAL SEQRES 48 A 964 GLU ASN PRO HIS LEU MET GLY TRP ASP TYR PRO LYS CYS SEQRES 49 A 964 ASP ARG ALA MET PRO ASN MET LEU ARG ILE MET ALA SER SEQRES 50 A 964 LEU VAL LEU ALA ARG LYS HIS THR THR CYS CYS SER LEU SEQRES 51 A 964 SER HIS ARG PHE TYR ARG LEU ALA ASN GLU CYS ALA GLN SEQRES 52 A 964 VAL LEU SER GLU MET VAL MET CYS GLY GLY SER LEU TYR SEQRES 53 A 964 VAL LYS PRO GLY GLY THR SER SER GLY ASP ALA THR THR SEQRES 54 A 964 ALA TYR ALA ASN SER VAL PHE ASN ILE CYS GLN ALA VAL SEQRES 55 A 964 THR ALA ASN VAL ASN ALA LEU LEU SER THR ASP GLY ASN SEQRES 56 A 964 LYS ILE ALA ASP LYS TYR VAL ARG ASN LEU GLN HIS ARG SEQRES 57 A 964 LEU TYR GLU CYS LEU TYR ARG ASN ARG ASP VAL ASP THR SEQRES 58 A 964 ASP PHE VAL ASN GLU PHE TYR ALA TYR LEU ARG LYS HIS SEQRES 59 A 964 PHE SER MET MET ILE LEU SER ASP ASP ALA VAL VAL CYS SEQRES 60 A 964 PHE ASN SER THR TYR ALA SER GLN GLY LEU VAL ALA SER SEQRES 61 A 964 ILE LYS ASN PHE LYS SER VAL LEU TYR TYR GLN ASN ASN SEQRES 62 A 964 VAL PHE MET SER GLU ALA LYS CYS TRP THR GLU THR ASP SEQRES 63 A 964 LEU THR LYS GLY PRO HIS GLU PHE CYS SER GLN HIS THR SEQRES 64 A 964 MET LEU VAL LYS GLN GLY ASP ASP TYR VAL TYR LEU PRO SEQRES 65 A 964 TYR PRO ASP PRO SER ARG ILE LEU GLY ALA GLY CYS PHE SEQRES 66 A 964 VAL ASP ASP ILE VAL LYS THR ASP GLY THR LEU MET ILE SEQRES 67 A 964 GLU ARG PHE VAL SER LEU ALA ILE ASP ALA TYR PRO LEU SEQRES 68 A 964 THR LYS HIS PRO ASN GLN GLU TYR ALA ASP VAL PHE HIS SEQRES 69 A 964 LEU TYR LEU GLN TYR ILE ARG LYS LEU HIS ASP GLU LEU SEQRES 70 A 964 THR GLY HIS MET LEU ASP MET TYR SER VAL MET LEU THR SEQRES 71 A 964 ASN ASP ASN THR SER ARG TYR TRP GLU PRO GLU PHE TYR SEQRES 72 A 964 GLU ALA MET TYR THR PRO HIS THR VAL LEU GLN GLU ASN SEQRES 73 A 964 LEU TYR PHE GLN GLY SER TRP SER HIS PRO GLN PHE GLU SEQRES 74 A 964 LYS GLY GLY SER GLY SER SER TRP SER HIS PRO GLN PHE SEQRES 75 A 964 GLU LYS SEQRES 1 B 199 GLY ALA ILE ALA SER GLU PHE SER SER LEU PRO SER TYR SEQRES 2 B 199 ALA ALA PHE ALA THR ALA GLN GLU ALA TYR GLU GLN ALA SEQRES 3 B 199 VAL ALA ASN GLY ASP SER GLU VAL VAL LEU LYS LYS LEU SEQRES 4 B 199 LYS LYS SER LEU ASN VAL ALA LYS SER GLU PHE ASP ARG SEQRES 5 B 199 ASP ALA ALA MET GLN ARG LYS LEU GLU LYS MET ALA ASP SEQRES 6 B 199 GLN ALA MET THR GLN MET TYR LYS GLN ALA ARG SER GLU SEQRES 7 B 199 ASP LYS ARG ALA LYS VAL THR SER ALA MET GLN THR MET SEQRES 8 B 199 LEU PHE THR MET LEU ARG LYS LEU ASP ASN ASP ALA LEU SEQRES 9 B 199 ASN ASN ILE ILE ASN ASN ALA ARG ASP GLY CYS VAL PRO SEQRES 10 B 199 LEU ASN ILE ILE PRO LEU THR THR ALA ALA LYS LEU MET SEQRES 11 B 199 VAL VAL ILE PRO ASP TYR ASN THR TYR LYS ASN THR CYS SEQRES 12 B 199 ASP GLY THR THR PHE THR TYR ALA SER ALA LEU TRP GLU SEQRES 13 B 199 ILE GLN GLN VAL VAL ASP ALA ASP SER LYS ILE VAL GLN SEQRES 14 B 199 LEU SER GLU ILE SER MET ASP ASN SER PRO ASN LEU ALA SEQRES 15 B 199 TRP PRO LEU ILE VAL THR ALA LEU ARG ALA ASN SER ALA SEQRES 16 B 199 VAL LYS LEU GLN SEQRES 1 C 84 GLY SER LYS MET SER ASP VAL LYS CYS THR SER VAL VAL SEQRES 2 C 84 LEU LEU SER VAL LEU GLN GLN LEU ARG VAL GLU SER SER SEQRES 3 C 84 SER LYS LEU TRP ALA GLN CYS VAL GLN LEU HIS ASN ASP SEQRES 4 C 84 ILE LEU LEU ALA LYS ASP THR THR GLU ALA PHE GLU LYS SEQRES 5 C 84 MET VAL SER LEU LEU SER VAL LEU LEU SER MET GLN GLY SEQRES 6 C 84 ALA VAL ASP ILE ASN LYS LEU CYS GLU GLU MET LEU ASP SEQRES 7 C 84 ASN ARG ALA THR LEU GLN SEQRES 1 D 199 GLY ALA ILE ALA SER GLU PHE SER SER LEU PRO SER TYR SEQRES 2 D 199 ALA ALA PHE ALA THR ALA GLN GLU ALA TYR GLU GLN ALA SEQRES 3 D 199 VAL ALA ASN GLY ASP SER GLU VAL VAL LEU LYS LYS LEU SEQRES 4 D 199 LYS LYS SER LEU ASN VAL ALA LYS SER GLU PHE ASP ARG SEQRES 5 D 199 ASP ALA ALA MET GLN ARG LYS LEU GLU LYS MET ALA ASP SEQRES 6 D 199 GLN ALA MET THR GLN MET TYR LYS GLN ALA ARG SER GLU SEQRES 7 D 199 ASP LYS ARG ALA LYS VAL THR SER ALA MET GLN THR MET SEQRES 8 D 199 LEU PHE THR MET LEU ARG LYS LEU ASP ASN ASP ALA LEU SEQRES 9 D 199 ASN ASN ILE ILE ASN ASN ALA ARG ASP GLY CYS VAL PRO SEQRES 10 D 199 LEU ASN ILE ILE PRO LEU THR THR ALA ALA LYS LEU MET SEQRES 11 D 199 VAL VAL ILE PRO ASP TYR ASN THR TYR LYS ASN THR CYS SEQRES 12 D 199 ASP GLY THR THR PHE THR TYR ALA SER ALA LEU TRP GLU SEQRES 13 D 199 ILE GLN GLN VAL VAL ASP ALA ASP SER LYS ILE VAL GLN SEQRES 14 D 199 LEU SER GLU ILE SER MET ASP ASN SER PRO ASN LEU ALA SEQRES 15 D 199 TRP PRO LEU ILE VAL THR ALA LEU ARG ALA ASN SER ALA SEQRES 16 D 199 VAL LYS LEU GLN SEQRES 1 P 30 C A U U C U C C U A A G A SEQRES 2 P 30 A G C U A U U A A A A U C SEQRES 3 P 30 A C A UAR SEQRES 1 T 38 U U U U C C C A A U G U G SEQRES 2 T 38 A U U U U A A U A G C U U SEQRES 3 T 38 C U U A G G A G A A U G HET UAR P 30 20 HET ZN A1001 1 HET ZN A1002 1 HET MG A1003 1 HETNAM UAR URACIL ARABINOSE-5'-PHOSPHATE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 5 UAR C9 H13 N2 O9 P FORMUL 7 ZN 2(ZN 2+) FORMUL 9 MG MG 2+ HELIX 1 AA1 ASP A 3 GLY A 13 1 11 HELIX 2 AA2 THR A 76 LYS A 91 1 16 HELIX 3 AA3 THR A 123 HIS A 133 1 11 HELIX 4 AA4 CYS A 139 TYR A 149 1 11 HELIX 5 AA5 ASP A 153 LYS A 159 5 7 HELIX 6 AA6 ASP A 170 ASN A 177 1 8 HELIX 7 AA7 LEU A 178 GLY A 200 1 23 HELIX 8 AA8 THR A 206 GLN A 210 5 5 HELIX 9 AA9 ASP A 218 PHE A 222 5 5 HELIX 10 AB1 VAL A 234 THR A 248 1 15 HELIX 11 AB2 ARG A 249 ASP A 260 5 12 HELIX 12 AB3 PHE A 275 PHE A 287 1 13 HELIX 13 AB4 ASN A 297 CYS A 301 5 5 HELIX 14 AB5 ASP A 303 SER A 318 1 16 HELIX 15 AB6 PRO A 322 PHE A 326 5 5 HELIX 16 AB7 SER A 367 ASP A 377 1 11 HELIX 17 AB8 ASP A 377 GLY A 385 1 9 HELIX 18 AB9 ASN A 416 LYS A 426 1 11 HELIX 19 AC1 ASN A 447 ASP A 454 1 8 HELIX 20 AC2 TYR A 455 ASN A 459 5 5 HELIX 21 AC3 ASP A 465 TYR A 479 1 15 HELIX 22 AC4 PRO A 505 TRP A 509 5 5 HELIX 23 AC5 LYS A 511 MET A 519 1 9 HELIX 24 AC6 SER A 520 LYS A 532 1 13 HELIX 25 AC7 SER A 561 THR A 582 1 22 HELIX 26 AC8 GLY A 596 SER A 607 1 12 HELIX 27 AC9 LYS A 621 MET A 626 1 6 HELIX 28 AD1 PRO A 627 ARG A 640 1 14 HELIX 29 AD2 LYS A 641 THR A 644 5 4 HELIX 30 AD3 SER A 647 LEU A 663 1 17 HELIX 31 AD4 THR A 686 SER A 709 1 24 HELIX 32 AD5 ASP A 717 ARG A 733 1 17 HELIX 33 AD6 ASP A 738 HIS A 752 1 15 HELIX 34 AD7 SER A 768 GLY A 774 1 7 HELIX 35 AD8 SER A 778 ASN A 790 1 13 HELIX 36 AD9 SER A 795 CYS A 799 5 5 HELIX 37 AE1 ASP A 804 GLY A 808 5 5 HELIX 38 AE2 ASP A 833 CYS A 842 1 10 HELIX 39 AE3 ILE A 847 LEU A 854 5 8 HELIX 40 AE4 MET A 855 TYR A 867 1 13 HELIX 41 AE5 PRO A 868 HIS A 872 5 5 HELIX 42 AE6 ASN A 874 SER A 904 1 31 HELIX 43 AE7 ASN A 909 GLU A 917 5 9 HELIX 44 AE8 PRO A 918 ALA A 923 1 6 HELIX 45 AE9 MET A 924 THR A 926 5 3 HELIX 46 AF1 SER B 11 GLY B 29 1 19 HELIX 47 AF2 SER B 31 LEU B 95 1 65 HELIX 48 AF3 ASP B 99 ALA B 110 1 12 HELIX 49 AF4 ASN B 118 ALA B 125 1 8 HELIX 50 AF5 ASP B 134 CYS B 142 1 9 HELIX 51 AF6 GLN B 168 ILE B 172 5 5 HELIX 52 AF7 ASN B 176 LEU B 180 5 5 HELIX 53 AF8 LYS C 2 LEU C 20 1 19 HELIX 54 AF9 ARG C 21 SER C 24 5 4 HELIX 55 AG1 SER C 25 ALA C 42 1 18 HELIX 56 AG2 ASP C 44 MET C 62 1 19 HELIX 57 AG3 ASP C 67 CYS C 72 1 6 HELIX 58 AG4 LEU D 9 GLY D 29 1 21 HELIX 59 AG5 SER D 31 LYS D 82 1 52 HELIX 60 AG6 LYS D 82 ASP D 99 1 18 HELIX 61 AG7 ASN D 100 GLY D 113 1 14 HELIX 62 AG8 ASP D 134 THR D 141 1 8 HELIX 63 AG9 ASN D 176 LEU D 180 5 5 SHEET 1 AA1 5 LEU A 19 PRO A 21 0 SHEET 2 AA1 5 CYS A 53 LYS A 59 -1 O GLN A 57 N THR A 20 SHEET 3 AA1 5 LEU A 65 ARG A 74 -1 O VAL A 72 N CYS A 54 SHEET 4 AA1 5 ASP A 109 LEU A 119 -1 O LEU A 119 N TYR A 69 SHEET 5 AA1 5 HIS A 99 ILE A 106 -1 N PHE A 102 O HIS A 113 SHEET 1 AA2 2 VAL A 31 TYR A 38 0 SHEET 2 AA2 2 ALA A 43 LYS A 50 -1 O LYS A 50 N VAL A 31 SHEET 1 AA3 3 ILE A 223 GLN A 224 0 SHEET 2 AA3 3 ILE A 201 VAL A 204 -1 N VAL A 202 O ILE A 223 SHEET 3 AA3 3 VAL A 231 VAL A 233 1 O VAL A 231 N GLY A 203 SHEET 1 AA4 4 GLY A 352 HIS A 355 0 SHEET 2 AA4 4 VAL A 338 PHE A 348 -1 N PHE A 348 O GLY A 352 SHEET 3 AA4 4 GLY A 327 VAL A 335 -1 N LEU A 329 O THR A 344 SHEET 4 AA4 4 HIS A 362 SER A 363 1 O SER A 363 N PHE A 334 SHEET 1 AA5 4 GLY A 352 HIS A 355 0 SHEET 2 AA5 4 VAL A 338 PHE A 348 -1 N PHE A 348 O GLY A 352 SHEET 3 AA5 4 GLY A 327 VAL A 335 -1 N LEU A 329 O THR A 344 SHEET 4 AA5 4 CYS B 114 PRO B 116 -1 O VAL B 115 N VAL A 330 SHEET 1 AA610 THR A 556 VAL A 560 0 SHEET 2 AA610 ILE A 539 LEU A 544 -1 N GLN A 541 O GLY A 559 SHEET 3 AA610 GLU A 665 CYS A 669 1 O MET A 668 N THR A 540 SHEET 4 AA610 SER A 672 LYS A 676 -1 O TYR A 674 N VAL A 667 SHEET 5 AA610 SER A 397 ALA A 400 -1 N ALA A 399 O LEU A 673 SHEET 6 AA610 ASN A 386 ASP A 390 -1 N ASN A 386 O ALA A 400 SHEET 7 AA610 LYS B 127 ILE B 132 1 O MET B 129 N LEU A 389 SHEET 8 AA610 LEU B 184 ARG B 190 -1 O LEU B 184 N ILE B 132 SHEET 9 AA610 ALA B 152 VAL B 160 -1 N VAL B 160 O ILE B 185 SHEET 10 AA610 THR B 146 TYR B 149 -1 N PHE B 147 O TRP B 154 SHEET 1 AA7 2 ASN A 414 PHE A 415 0 SHEET 2 AA7 2 PHE A 843 VAL A 844 -1 O VAL A 844 N ASN A 414 SHEET 1 AA8 4 PHE A 753 LEU A 758 0 SHEET 2 AA8 4 ASP A 761 ASN A 767 -1 O CYS A 765 N SER A 754 SHEET 3 AA8 4 PRO A 612 GLY A 616 -1 N MET A 615 O VAL A 764 SHEET 4 AA8 4 TRP A 800 GLU A 802 -1 O GLU A 802 N LEU A 614 SHEET 1 AA9 2 HIS A 816 GLN A 822 0 SHEET 2 AA9 2 ASP A 825 TYR A 831 -1 O ASP A 825 N GLN A 822 SHEET 1 AB1 5 LYS D 127 ILE D 132 0 SHEET 2 AB1 5 LEU D 184 ALA D 191 -1 O LEU D 184 N ILE D 132 SHEET 3 AB1 5 ALA D 152 VAL D 160 -1 N VAL D 160 O ILE D 185 SHEET 4 AB1 5 THR D 146 TYR D 149 -1 N PHE D 147 O TRP D 154 SHEET 5 AB1 5 CYS D 142 ASP D 143 -1 N ASP D 143 O THR D 146 SHEET 1 AB2 4 LYS D 127 ILE D 132 0 SHEET 2 AB2 4 LEU D 184 ALA D 191 -1 O LEU D 184 N ILE D 132 SHEET 3 AB2 4 ALA D 152 VAL D 160 -1 N VAL D 160 O ILE D 185 SHEET 4 AB2 4 ILE D 166 VAL D 167 -1 O VAL D 167 N VAL D 159 LINK O3' A P 29 P UAR P 30 1555 1555 1.61 LINK ND1 HIS A 295 ZN ZN A1001 1555 1555 1.89 LINK SG CYS A 301 ZN ZN A1001 1555 1555 2.45 LINK SG CYS A 306 ZN ZN A1001 1555 1555 2.39 LINK SG CYS A 310 ZN ZN A1001 1555 1555 2.12 LINK SG CYS A 487 ZN ZN A1002 1555 1555 2.09 LINK ND1 HIS A 642 ZN ZN A1002 1555 1555 1.88 LINK SG CYS A 645 ZN ZN A1002 1555 1555 2.71 LINK SG CYS A 646 ZN ZN A1002 1555 1555 2.26 LINK OD1 ASP A 761 MG MG A1003 1555 1555 1.92 CISPEP 1 PHE A 504 PRO A 505 0 -8.20 CISPEP 2 TRP B 182 PRO B 183 0 3.15 CISPEP 3 TRP D 182 PRO D 183 0 -1.88 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 241412119 CONECT 245912119 CONECT 250012119 CONECT 253212119 CONECT 394012120 CONECT 517012120 CONECT 519312120 CONECT 519912120 CONECT 610512121 CONECT1142711441 CONECT1144111427114421144311444 CONECT1144211441 CONECT1144311441 CONECT114441144111445 CONECT114451144411446 CONECT11446114451144711448 CONECT114471144611452 CONECT11448114461144911450 CONECT1144911448 CONECT11450114481145111452 CONECT1145111450 CONECT11452114471145011453 CONECT11453114521145411460 CONECT11454114531145511456 CONECT1145511454 CONECT114561145411457 CONECT11457114561145811459 CONECT1145811457 CONECT114591145711460 CONECT114601145311459 CONECT12119 2414 2459 2500 2532 CONECT12120 3940 5170 5193 5199 CONECT12121 6105 MASTER 285 0 4 63 45 0 0 612115 6 33 120 END