HEADER LYASE 18-AUG-25 9Q3I TITLE CRYO-EM STRUCTURE OF THE CLASS II CYCLASE DOMAIN IN THE BIFUNCTIONAL TITLE 2 COPALYL DIPHOSPHATE SYNTHASE FROM PENICILLIUM VERRUCULOSUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPALYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CPS,BIFUNCTIONAL DITERPENE SYNTHASE PVCPS; COMPND 5 EC: 5.5.1.12,2.5.1.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TALAROMYCES VERRUCULOSUS; SOURCE 3 ORGANISM_TAXID: 198730; SOURCE 4 GENE: PVCPS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TERPENE, NATURAL PRODUCTS, CYCLIZATION, LYASE EXPDTA ELECTRON MICROSCOPY AUTHOR M.N.GAYNES,D.W.CHRISTIANSON REVDAT 1 24-SEP-25 9Q3I 0 JRNL AUTH M.N.GAYNES,K.SCHULTZ,E.S.WENGER,R.MARMORSTEIN, JRNL AUTH 2 D.W.CHRISTIANSON JRNL TITL CRYO-EM STRUCTURE OF THE CYCLASE DOMAIN AND EVALUATION OF JRNL TITL 2 SUBSTRATE CHANNELING IN A BIFUNCTIONAL CLASS II TERPENE JRNL TITL 3 SYNTHASE. JRNL REF BIORXIV 2025 JRNL REFN ISSN 2692-8205 JRNL PMID 40894651 JRNL DOI 10.1101/2025.08.20.671325 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : TOPAZ, CRYOSPARC, UCSF CHIMERAX, REMARK 3 RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.900 REMARK 3 NUMBER OF PARTICLES : 381049 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9Q3I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1000299142. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COPALYL DIPHOSPHATE SYNTHASE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 4100 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3300.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 GLY A -22 REMARK 465 SER A -21 REMARK 465 SER A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 GLY A -11 REMARK 465 GLU A -10 REMARK 465 ASN A -9 REMARK 465 LEU A -8 REMARK 465 TYR A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 GLY A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 MET A 4 REMARK 465 ASP A 5 REMARK 465 VAL A 130 REMARK 465 ASP A 131 REMARK 465 SER A 132 REMARK 465 THR A 133 REMARK 465 LEU A 134 REMARK 465 HIS A 135 REMARK 465 VAL A 136 REMARK 465 GLY A 137 REMARK 465 PHE A 156 REMARK 465 ALA A 157 REMARK 465 PHE A 158 REMARK 465 LYS A 169 REMARK 465 GLN A 170 REMARK 465 LYS A 171 REMARK 465 LEU A 172 REMARK 465 SER A 173 REMARK 465 LYS A 174 REMARK 465 PHE A 175 REMARK 465 LYS A 176 REMARK 465 ALA A 177 REMARK 465 GLY A 247 REMARK 465 LYS A 248 REMARK 465 GLY A 249 REMARK 465 SER A 250 REMARK 465 ALA A 281 REMARK 465 PRO A 282 REMARK 465 SER A 348 REMARK 465 GLN A 349 REMARK 465 GLU A 350 REMARK 465 ARG A 351 REMARK 465 ASN A 352 REMARK 465 PRO A 353 REMARK 465 THR A 429 REMARK 465 LEU A 430 REMARK 465 ARG A 431 REMARK 465 ASP A 432 REMARK 465 PRO A 456 REMARK 465 GLY A 457 REMARK 465 GLY A 458 REMARK 465 GLU A 506 REMARK 465 ARG A 507 REMARK 465 THR A 508 REMARK 465 MET A 509 REMARK 465 GLN A 510 REMARK 465 SER A 511 REMARK 465 ASP A 545 REMARK 465 GLU A 546 REMARK 465 ASN A 547 REMARK 465 ALA A 548 REMARK 465 GLU A 549 REMARK 465 ALA A 550 REMARK 465 ALA A 551 REMARK 465 PRO A 552 REMARK 465 VAL A 553 REMARK 465 ILE A 554 REMARK 465 ASN A 555 REMARK 465 GLY A 556 REMARK 465 ILE A 557 REMARK 465 SER A 558 REMARK 465 THR A 559 REMARK 465 ASN A 560 REMARK 465 GLY A 561 REMARK 465 PHE A 562 REMARK 465 GLU A 563 REMARK 465 HIS A 564 REMARK 465 THR A 565 REMARK 465 ASP A 566 REMARK 465 ARG A 567 REMARK 465 ILE A 568 REMARK 465 ASN A 569 REMARK 465 GLY A 570 REMARK 465 LYS A 571 REMARK 465 LEU A 572 REMARK 465 LYS A 573 REMARK 465 VAL A 574 REMARK 465 ASN A 575 REMARK 465 GLY A 576 REMARK 465 THR A 577 REMARK 465 ASN A 578 REMARK 465 GLY A 579 REMARK 465 THR A 580 REMARK 465 ASN A 581 REMARK 465 GLY A 582 REMARK 465 SER A 583 REMARK 465 HIS A 584 REMARK 465 GLU A 585 REMARK 465 THR A 586 REMARK 465 ASN A 587 REMARK 465 GLY A 588 REMARK 465 ILE A 589 REMARK 465 ASN A 590 REMARK 465 GLY A 591 REMARK 465 THR A 592 REMARK 465 HIS A 593 REMARK 465 GLU A 594 REMARK 465 ILE A 595 REMARK 465 GLU A 596 REMARK 465 GLN A 597 REMARK 465 ILE A 598 REMARK 465 ASN A 599 REMARK 465 GLY A 600 REMARK 465 VAL A 601 REMARK 465 ASN A 602 REMARK 465 GLY A 603 REMARK 465 THR A 604 REMARK 465 ASN A 605 REMARK 465 GLY A 606 REMARK 465 HIS A 607 REMARK 465 SER A 608 REMARK 465 ASP A 609 REMARK 465 VAL A 610 REMARK 465 PRO A 611 REMARK 465 HIS A 612 REMARK 465 ASP A 613 REMARK 465 THR A 614 REMARK 465 ASN A 615 REMARK 465 GLY A 616 REMARK 465 TRP A 617 REMARK 465 VAL A 618 REMARK 465 GLU A 619 REMARK 465 GLU A 620 REMARK 465 PRO A 621 REMARK 465 THR A 622 REMARK 465 ALA A 623 REMARK 465 ILE A 624 REMARK 465 ASN A 625 REMARK 465 GLU A 626 REMARK 465 THR A 627 REMARK 465 ASN A 628 REMARK 465 GLY A 629 REMARK 465 HIS A 630 REMARK 465 TYR A 631 REMARK 465 VAL A 632 REMARK 465 ASN A 633 REMARK 465 GLY A 634 REMARK 465 THR A 635 REMARK 465 ASN A 636 REMARK 465 HIS A 637 REMARK 465 GLU A 638 REMARK 465 THR A 639 REMARK 465 PRO A 640 REMARK 465 LEU A 641 REMARK 465 THR A 642 REMARK 465 ASN A 643 REMARK 465 GLY A 644 REMARK 465 ILE A 645 REMARK 465 SER A 646 REMARK 465 ASN A 647 REMARK 465 GLY A 648 REMARK 465 ASP A 649 REMARK 465 SER A 650 REMARK 465 VAL A 651 REMARK 465 SER A 652 REMARK 465 VAL A 653 REMARK 465 HIS A 654 REMARK 465 THR A 655 REMARK 465 ASP A 656 REMARK 465 HIS A 657 REMARK 465 SER A 658 REMARK 465 ASP A 659 REMARK 465 SER A 660 REMARK 465 TYR A 661 REMARK 465 TYR A 662 REMARK 465 GLN A 663 REMARK 465 ARG A 664 REMARK 465 SER A 665 REMARK 465 ASP A 666 REMARK 465 TRP A 667 REMARK 465 THR A 668 REMARK 465 ALA A 669 REMARK 465 ASP A 670 REMARK 465 GLU A 671 REMARK 465 GLU A 672 REMARK 465 GLN A 673 REMARK 465 ILE A 674 REMARK 465 LEU A 675 REMARK 465 LEU A 676 REMARK 465 GLY A 677 REMARK 465 PRO A 678 REMARK 465 PHE A 679 REMARK 465 ASP A 680 REMARK 465 TYR A 681 REMARK 465 LEU A 682 REMARK 465 GLU A 683 REMARK 465 SER A 684 REMARK 465 LEU A 685 REMARK 465 PRO A 686 REMARK 465 GLY A 687 REMARK 465 LYS A 688 REMARK 465 ASN A 689 REMARK 465 MET A 690 REMARK 465 ARG A 691 REMARK 465 SER A 692 REMARK 465 GLN A 693 REMARK 465 LEU A 694 REMARK 465 ILE A 695 REMARK 465 GLN A 696 REMARK 465 SER A 697 REMARK 465 PHE A 698 REMARK 465 ASN A 699 REMARK 465 THR A 700 REMARK 465 TRP A 701 REMARK 465 LEU A 702 REMARK 465 LYS A 703 REMARK 465 VAL A 704 REMARK 465 PRO A 705 REMARK 465 THR A 706 REMARK 465 GLU A 707 REMARK 465 SER A 708 REMARK 465 LEU A 709 REMARK 465 ASP A 710 REMARK 465 VAL A 711 REMARK 465 ILE A 712 REMARK 465 ILE A 713 REMARK 465 LYS A 714 REMARK 465 VAL A 715 REMARK 465 ILE A 716 REMARK 465 SER A 717 REMARK 465 MET A 718 REMARK 465 LEU A 719 REMARK 465 HIS A 720 REMARK 465 THR A 721 REMARK 465 ALA A 722 REMARK 465 SER A 723 REMARK 465 LEU A 724 REMARK 465 LEU A 725 REMARK 465 ILE A 726 REMARK 465 ASP A 727 REMARK 465 ASP A 728 REMARK 465 ILE A 729 REMARK 465 GLN A 730 REMARK 465 ASP A 731 REMARK 465 GLN A 732 REMARK 465 SER A 733 REMARK 465 ILE A 734 REMARK 465 LEU A 735 REMARK 465 ARG A 736 REMARK 465 ARG A 737 REMARK 465 GLY A 738 REMARK 465 GLN A 739 REMARK 465 PRO A 740 REMARK 465 VAL A 741 REMARK 465 ALA A 742 REMARK 465 HIS A 743 REMARK 465 SER A 744 REMARK 465 ILE A 745 REMARK 465 PHE A 746 REMARK 465 GLY A 747 REMARK 465 THR A 748 REMARK 465 ALA A 749 REMARK 465 GLN A 750 REMARK 465 ALA A 751 REMARK 465 MET A 752 REMARK 465 ASN A 753 REMARK 465 SER A 754 REMARK 465 GLY A 755 REMARK 465 ASN A 756 REMARK 465 TYR A 757 REMARK 465 VAL A 758 REMARK 465 TYR A 759 REMARK 465 PHE A 760 REMARK 465 LEU A 761 REMARK 465 ALA A 762 REMARK 465 LEU A 763 REMARK 465 ARG A 764 REMARK 465 GLU A 765 REMARK 465 VAL A 766 REMARK 465 GLN A 767 REMARK 465 LYS A 768 REMARK 465 LEU A 769 REMARK 465 GLN A 770 REMARK 465 ASN A 771 REMARK 465 PRO A 772 REMARK 465 LYS A 773 REMARK 465 ALA A 774 REMARK 465 ILE A 775 REMARK 465 SER A 776 REMARK 465 ILE A 777 REMARK 465 TYR A 778 REMARK 465 VAL A 779 REMARK 465 ASP A 780 REMARK 465 SER A 781 REMARK 465 LEU A 782 REMARK 465 ILE A 783 REMARK 465 ASP A 784 REMARK 465 LEU A 785 REMARK 465 HIS A 786 REMARK 465 ARG A 787 REMARK 465 GLY A 788 REMARK 465 GLN A 789 REMARK 465 GLY A 790 REMARK 465 MET A 791 REMARK 465 GLU A 792 REMARK 465 LEU A 793 REMARK 465 PHE A 794 REMARK 465 TRP A 795 REMARK 465 ARG A 796 REMARK 465 ASP A 797 REMARK 465 SER A 798 REMARK 465 LEU A 799 REMARK 465 MET A 800 REMARK 465 CYS A 801 REMARK 465 PRO A 802 REMARK 465 THR A 803 REMARK 465 GLU A 804 REMARK 465 GLU A 805 REMARK 465 GLN A 806 REMARK 465 TYR A 807 REMARK 465 LEU A 808 REMARK 465 ASP A 809 REMARK 465 MET A 810 REMARK 465 VAL A 811 REMARK 465 ALA A 812 REMARK 465 ASN A 813 REMARK 465 LYS A 814 REMARK 465 THR A 815 REMARK 465 GLY A 816 REMARK 465 GLY A 817 REMARK 465 LEU A 818 REMARK 465 PHE A 819 REMARK 465 CYS A 820 REMARK 465 LEU A 821 REMARK 465 ALA A 822 REMARK 465 ILE A 823 REMARK 465 GLN A 824 REMARK 465 LEU A 825 REMARK 465 MET A 826 REMARK 465 GLN A 827 REMARK 465 ALA A 828 REMARK 465 GLU A 829 REMARK 465 ALA A 830 REMARK 465 THR A 831 REMARK 465 ILE A 832 REMARK 465 GLN A 833 REMARK 465 VAL A 834 REMARK 465 ASP A 835 REMARK 465 PHE A 836 REMARK 465 ILE A 837 REMARK 465 PRO A 838 REMARK 465 LEU A 839 REMARK 465 VAL A 840 REMARK 465 ARG A 841 REMARK 465 LEU A 842 REMARK 465 LEU A 843 REMARK 465 GLY A 844 REMARK 465 ILE A 845 REMARK 465 ILE A 846 REMARK 465 PHE A 847 REMARK 465 GLN A 848 REMARK 465 ILE A 849 REMARK 465 CYS A 850 REMARK 465 ASP A 851 REMARK 465 ASP A 852 REMARK 465 TYR A 853 REMARK 465 LEU A 854 REMARK 465 ASN A 855 REMARK 465 LEU A 856 REMARK 465 LYS A 857 REMARK 465 SER A 858 REMARK 465 THR A 859 REMARK 465 ALA A 860 REMARK 465 TYR A 861 REMARK 465 THR A 862 REMARK 465 ASP A 863 REMARK 465 ASN A 864 REMARK 465 LYS A 865 REMARK 465 GLY A 866 REMARK 465 LEU A 867 REMARK 465 CYS A 868 REMARK 465 GLU A 869 REMARK 465 ASP A 870 REMARK 465 LEU A 871 REMARK 465 THR A 872 REMARK 465 GLU A 873 REMARK 465 GLY A 874 REMARK 465 LYS A 875 REMARK 465 PHE A 876 REMARK 465 SER A 877 REMARK 465 PHE A 878 REMARK 465 PRO A 879 REMARK 465 ILE A 880 REMARK 465 ILE A 881 REMARK 465 HIS A 882 REMARK 465 SER A 883 REMARK 465 ILE A 884 REMARK 465 ARG A 885 REMARK 465 SER A 886 REMARK 465 ASN A 887 REMARK 465 PRO A 888 REMARK 465 GLY A 889 REMARK 465 ASN A 890 REMARK 465 ARG A 891 REMARK 465 GLN A 892 REMARK 465 LEU A 893 REMARK 465 ILE A 894 REMARK 465 ASN A 895 REMARK 465 ILE A 896 REMARK 465 LEU A 897 REMARK 465 LYS A 898 REMARK 465 GLN A 899 REMARK 465 LYS A 900 REMARK 465 PRO A 901 REMARK 465 ARG A 902 REMARK 465 GLU A 903 REMARK 465 ASP A 904 REMARK 465 ASP A 905 REMARK 465 ILE A 906 REMARK 465 LYS A 907 REMARK 465 ARG A 908 REMARK 465 TYR A 909 REMARK 465 ALA A 910 REMARK 465 LEU A 911 REMARK 465 SER A 912 REMARK 465 TYR A 913 REMARK 465 MET A 914 REMARK 465 GLU A 915 REMARK 465 SER A 916 REMARK 465 THR A 917 REMARK 465 ASN A 918 REMARK 465 SER A 919 REMARK 465 PHE A 920 REMARK 465 GLU A 921 REMARK 465 TYR A 922 REMARK 465 THR A 923 REMARK 465 ARG A 924 REMARK 465 GLY A 925 REMARK 465 VAL A 926 REMARK 465 VAL A 927 REMARK 465 ARG A 928 REMARK 465 LYS A 929 REMARK 465 LEU A 930 REMARK 465 LYS A 931 REMARK 465 THR A 932 REMARK 465 GLU A 933 REMARK 465 ALA A 934 REMARK 465 ILE A 935 REMARK 465 ASP A 936 REMARK 465 THR A 937 REMARK 465 ILE A 938 REMARK 465 GLN A 939 REMARK 465 GLY A 940 REMARK 465 LEU A 941 REMARK 465 GLU A 942 REMARK 465 LYS A 943 REMARK 465 HIS A 944 REMARK 465 GLY A 945 REMARK 465 LEU A 946 REMARK 465 GLU A 947 REMARK 465 GLU A 948 REMARK 465 ASN A 949 REMARK 465 ILE A 950 REMARK 465 GLY A 951 REMARK 465 ILE A 952 REMARK 465 ARG A 953 REMARK 465 LYS A 954 REMARK 465 ILE A 955 REMARK 465 LEU A 956 REMARK 465 ALA A 957 REMARK 465 ARG A 958 REMARK 465 MET A 959 REMARK 465 SER A 960 REMARK 465 LEU A 961 REMARK 465 GLU A 962 REMARK 465 LEU A 963 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 6 CG CD1 CD2 REMARK 470 GLN A 7 CG CD OE1 NE2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 VAL A 14 CG1 CG2 REMARK 470 LEU A 17 CG CD1 CD2 REMARK 470 ARG A 20 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 27 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 29 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 ASP A 48 CG OD1 OD2 REMARK 470 ASP A 49 CG OD1 OD2 REMARK 470 GLN A 50 CG CD OE1 NE2 REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 THR A 103 OG1 CG2 REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 ASP A 109 CG OD1 OD2 REMARK 470 ASN A 115 CG OD1 ND2 REMARK 470 GLN A 118 CG CD OE1 NE2 REMARK 470 PHE A 138 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 159 OG REMARK 470 ARG A 161 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 LEU A 165 CG CD1 CD2 REMARK 470 ILE A 167 CG1 CG2 CD1 REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 GLN A 178 CG CD OE1 NE2 REMARK 470 TYR A 179 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 182 CG CD1 CD2 REMARK 470 ILE A 184 CG1 CG2 CD1 REMARK 470 LEU A 192 CG CD1 CD2 REMARK 470 ILE A 199 CG1 CG2 CD1 REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 GLN A 229 CG CD OE1 NE2 REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 ASP A 277 CG OD1 OD2 REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 ILE A 287 CG1 CG2 CD1 REMARK 470 ASP A 293 CG OD1 OD2 REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 THR A 305 OG1 CG2 REMARK 470 ASP A 313 CG OD1 OD2 REMARK 470 ASP A 314 CG OD1 OD2 REMARK 470 LEU A 325 CG CD1 CD2 REMARK 470 ASN A 326 CG OD1 ND2 REMARK 470 ASP A 332 CG OD1 OD2 REMARK 470 LEU A 335 CG CD1 CD2 REMARK 470 LYS A 336 CG CD CE NZ REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 GLU A 340 CG CD OE1 OE2 REMARK 470 GLU A 341 CG CD OE1 OE2 REMARK 470 GLU A 370 CG CD OE1 OE2 REMARK 470 LYS A 387 CG CD CE NZ REMARK 470 GLN A 388 CG CD OE1 NE2 REMARK 470 GLU A 393 CG CD OE1 OE2 REMARK 470 ARG A 397 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 398 CG OD1 OD2 REMARK 470 THR A 412 OG1 CG2 REMARK 470 LYS A 423 CG CD CE NZ REMARK 470 LYS A 426 CG CD CE NZ REMARK 470 LYS A 437 CG CD CE NZ REMARK 470 LEU A 443 CG CD1 CD2 REMARK 470 PHE A 444 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 445 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 GLU A 468 CG CD OE1 OE2 REMARK 470 ILE A 475 CG1 CG2 CD1 REMARK 470 ASP A 483 CG OD1 OD2 REMARK 470 GLU A 487 CG CD OE1 OE2 REMARK 470 ASP A 492 CG OD1 OD2 REMARK 470 LYS A 494 CG CD CE NZ REMARK 470 GLU A 498 CG CD OE1 OE2 REMARK 470 GLU A 526 CG CD OE1 OE2 REMARK 470 GLU A 530 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 75 -87.03 59.31 REMARK 500 TYR A 100 -125.13 43.45 REMARK 500 ILE A 154 113.59 45.32 REMARK 500 ARG A 163 -32.43 -130.42 REMARK 500 LEU A 165 51.70 -93.22 REMARK 500 ALA A 215 9.90 59.40 REMARK 500 LYS A 336 43.61 -92.34 REMARK 500 HIS A 342 -2.43 68.06 REMARK 500 TYR A 374 36.22 -98.28 REMARK 500 GLU A 519 157.30 179.78 REMARK 500 LYS A 520 -40.81 -27.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-72194 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE CLASS II CYCLASE DOMAIN IN THE REMARK 900 BIFUNCTIONAL COPALYL DIPHOSPHATE SYNTHASE FROM PENICILLIUM REMARK 900 VERRUCULOSUM DBREF1 9Q3I A 1 963 UNP PVCPS_TALVE DBREF2 9Q3I A A0A348FUE1 1 963 SEQADV 9Q3I MET A -23 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I GLY A -22 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I SER A -21 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I SER A -20 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I HIS A -19 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I HIS A -18 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I HIS A -17 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I HIS A -16 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I HIS A -15 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I HIS A -14 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I SER A -13 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I SER A -12 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I GLY A -11 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I GLU A -10 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I ASN A -9 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I LEU A -8 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I TYR A -7 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I PHE A -6 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I GLN A -5 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I GLY A -4 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I HIS A -3 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I MET A -2 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I ALA A -1 UNP A0A348FUE EXPRESSION TAG SEQADV 9Q3I SER A 0 UNP A0A348FUE EXPRESSION TAG SEQRES 1 A 987 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 987 GLU ASN LEU TYR PHE GLN GLY HIS MET ALA SER MET SER SEQRES 3 A 987 PRO MET ASP LEU GLN GLU SER ALA ALA ALA LEU VAL ARG SEQRES 4 A 987 GLN LEU GLY GLU ARG VAL GLU ASP ARG ARG GLY PHE GLY SEQRES 5 A 987 PHE MET SER PRO ALA ILE TYR ASP THR ALA TRP VAL SER SEQRES 6 A 987 MET ILE SER LYS THR ILE ASP ASP GLN LYS THR TRP LEU SEQRES 7 A 987 PHE ALA GLU CYS PHE GLN TYR ILE LEU SER HIS GLN LEU SEQRES 8 A 987 GLU ASP GLY GLY TRP ALA MET TYR ALA SER GLU ILE ASP SEQRES 9 A 987 ALA ILE LEU ASN THR SER ALA SER LEU LEU SER LEU LYS SEQRES 10 A 987 ARG HIS LEU SER ASN PRO TYR GLN ILE THR SER ILE THR SEQRES 11 A 987 GLN GLU ASP LEU SER ALA ARG ILE ASN ARG ALA GLN ASN SEQRES 12 A 987 ALA LEU GLN LYS LEU LEU ASN GLU TRP ASN VAL ASP SER SEQRES 13 A 987 THR LEU HIS VAL GLY PHE GLU ILE LEU VAL PRO ALA LEU SEQRES 14 A 987 LEU ARG TYR LEU GLU ASP GLU GLY ILE ALA PHE ALA PHE SEQRES 15 A 987 SER GLY ARG GLU ARG LEU LEU GLU ILE GLU LYS GLN LYS SEQRES 16 A 987 LEU SER LYS PHE LYS ALA GLN TYR LEU TYR LEU PRO ILE SEQRES 17 A 987 LYS VAL THR ALA LEU HIS SER LEU GLU ALA PHE ILE GLY SEQRES 18 A 987 ALA ILE GLU PHE ASP LYS VAL SER HIS HIS LYS VAL SER SEQRES 19 A 987 GLY ALA PHE MET ALA SER PRO SER SER THR ALA ALA TYR SEQRES 20 A 987 MET MET HIS ALA THR GLN TRP ASP ASP GLU CYS GLU ASP SEQRES 21 A 987 TYR LEU ARG HIS VAL ILE ALA HIS ALA SER GLY LYS GLY SEQRES 22 A 987 SER GLY GLY VAL PRO SER ALA PHE PRO SER THR ILE PHE SEQRES 23 A 987 GLU SER VAL TRP PRO LEU SER THR LEU LEU LYS VAL GLY SEQRES 24 A 987 TYR ASP LEU ASN SER ALA PRO PHE ILE GLU LYS ILE ARG SEQRES 25 A 987 SER TYR LEU HIS ASP ALA TYR ILE ALA GLU LYS GLY ILE SEQRES 26 A 987 LEU GLY PHE THR PRO PHE VAL GLY ALA ASP ALA ASP ASP SEQRES 27 A 987 THR ALA THR THR ILE LEU VAL LEU ASN LEU LEU ASN GLN SEQRES 28 A 987 PRO VAL SER VAL ASP ALA MET LEU LYS GLU PHE GLU GLU SEQRES 29 A 987 GLU HIS HIS PHE LYS THR TYR SER GLN GLU ARG ASN PRO SEQRES 30 A 987 SER PHE SER ALA ASN CYS ASN VAL LEU LEU ALA LEU LEU SEQRES 31 A 987 TYR SER GLN GLU PRO SER LEU TYR SER ALA GLN ILE GLU SEQRES 32 A 987 LYS ALA ILE ARG PHE LEU TYR LYS GLN PHE THR ASP SER SEQRES 33 A 987 GLU MET ASP VAL ARG ASP LYS TRP ASN LEU SER PRO TYR SEQRES 34 A 987 TYR SER TRP MET LEU MET THR GLN ALA ILE THR ARG LEU SEQRES 35 A 987 THR THR LEU GLN LYS THR SER LYS LEU SER THR LEU ARG SEQRES 36 A 987 ASP ASP SER ILE SER LYS GLY LEU ILE SER LEU LEU PHE SEQRES 37 A 987 ARG ILE ALA SER THR VAL VAL LYS ASP GLN LYS PRO GLY SEQRES 38 A 987 GLY SER TRP GLY THR ARG ALA SER LYS GLU GLU THR ALA SEQRES 39 A 987 TYR ALA VAL LEU ILE LEU THR TYR ALA PHE TYR LEU ASP SEQRES 40 A 987 GLU VAL THR GLU SER LEU ARG HIS ASP ILE LYS ILE ALA SEQRES 41 A 987 ILE GLU ASN GLY CYS SER PHE LEU SER GLU ARG THR MET SEQRES 42 A 987 GLN SER ASP SER GLU TRP LEU TRP VAL GLU LYS VAL THR SEQRES 43 A 987 TYR LYS SER GLU VAL LEU SER GLU ALA TYR ILE LEU ALA SEQRES 44 A 987 ALA LEU LYS ARG ALA ALA ASP LEU PRO ASP GLU ASN ALA SEQRES 45 A 987 GLU ALA ALA PRO VAL ILE ASN GLY ILE SER THR ASN GLY SEQRES 46 A 987 PHE GLU HIS THR ASP ARG ILE ASN GLY LYS LEU LYS VAL SEQRES 47 A 987 ASN GLY THR ASN GLY THR ASN GLY SER HIS GLU THR ASN SEQRES 48 A 987 GLY ILE ASN GLY THR HIS GLU ILE GLU GLN ILE ASN GLY SEQRES 49 A 987 VAL ASN GLY THR ASN GLY HIS SER ASP VAL PRO HIS ASP SEQRES 50 A 987 THR ASN GLY TRP VAL GLU GLU PRO THR ALA ILE ASN GLU SEQRES 51 A 987 THR ASN GLY HIS TYR VAL ASN GLY THR ASN HIS GLU THR SEQRES 52 A 987 PRO LEU THR ASN GLY ILE SER ASN GLY ASP SER VAL SER SEQRES 53 A 987 VAL HIS THR ASP HIS SER ASP SER TYR TYR GLN ARG SER SEQRES 54 A 987 ASP TRP THR ALA ASP GLU GLU GLN ILE LEU LEU GLY PRO SEQRES 55 A 987 PHE ASP TYR LEU GLU SER LEU PRO GLY LYS ASN MET ARG SEQRES 56 A 987 SER GLN LEU ILE GLN SER PHE ASN THR TRP LEU LYS VAL SEQRES 57 A 987 PRO THR GLU SER LEU ASP VAL ILE ILE LYS VAL ILE SER SEQRES 58 A 987 MET LEU HIS THR ALA SER LEU LEU ILE ASP ASP ILE GLN SEQRES 59 A 987 ASP GLN SER ILE LEU ARG ARG GLY GLN PRO VAL ALA HIS SEQRES 60 A 987 SER ILE PHE GLY THR ALA GLN ALA MET ASN SER GLY ASN SEQRES 61 A 987 TYR VAL TYR PHE LEU ALA LEU ARG GLU VAL GLN LYS LEU SEQRES 62 A 987 GLN ASN PRO LYS ALA ILE SER ILE TYR VAL ASP SER LEU SEQRES 63 A 987 ILE ASP LEU HIS ARG GLY GLN GLY MET GLU LEU PHE TRP SEQRES 64 A 987 ARG ASP SER LEU MET CYS PRO THR GLU GLU GLN TYR LEU SEQRES 65 A 987 ASP MET VAL ALA ASN LYS THR GLY GLY LEU PHE CYS LEU SEQRES 66 A 987 ALA ILE GLN LEU MET GLN ALA GLU ALA THR ILE GLN VAL SEQRES 67 A 987 ASP PHE ILE PRO LEU VAL ARG LEU LEU GLY ILE ILE PHE SEQRES 68 A 987 GLN ILE CYS ASP ASP TYR LEU ASN LEU LYS SER THR ALA SEQRES 69 A 987 TYR THR ASP ASN LYS GLY LEU CYS GLU ASP LEU THR GLU SEQRES 70 A 987 GLY LYS PHE SER PHE PRO ILE ILE HIS SER ILE ARG SER SEQRES 71 A 987 ASN PRO GLY ASN ARG GLN LEU ILE ASN ILE LEU LYS GLN SEQRES 72 A 987 LYS PRO ARG GLU ASP ASP ILE LYS ARG TYR ALA LEU SER SEQRES 73 A 987 TYR MET GLU SER THR ASN SER PHE GLU TYR THR ARG GLY SEQRES 74 A 987 VAL VAL ARG LYS LEU LYS THR GLU ALA ILE ASP THR ILE SEQRES 75 A 987 GLN GLY LEU GLU LYS HIS GLY LEU GLU GLU ASN ILE GLY SEQRES 76 A 987 ILE ARG LYS ILE LEU ALA ARG MET SER LEU GLU LEU HELIX 1 AA1 LEU A 6 ARG A 20 1 15 HELIX 2 AA2 VAL A 21 ASP A 23 5 3 HELIX 3 AA3 ALA A 33 SER A 41 1 9 HELIX 4 AA4 PHE A 55 HIS A 65 1 11 HELIX 5 AA5 SER A 77 ASN A 98 1 22 HELIX 6 AA6 GLU A 108 TRP A 128 1 21 HELIX 7 AA7 ILE A 140 ASP A 151 1 12 HELIX 8 AA8 VAL A 186 HIS A 190 5 5 HELIX 9 AA9 SER A 191 PHE A 195 5 5 HELIX 10 AB1 GLU A 200 SER A 205 1 6 HELIX 11 AB2 SER A 216 ALA A 227 1 12 HELIX 12 AB3 ASP A 231 ALA A 245 1 15 HELIX 13 AB4 SER A 259 VAL A 274 1 16 HELIX 14 AB5 ILE A 284 GLU A 298 1 15 HELIX 15 AB6 ASP A 311 LEU A 325 1 15 HELIX 16 AB7 VAL A 331 LYS A 336 1 6 HELIX 17 AB8 PHE A 355 TYR A 367 1 13 HELIX 18 AB9 TYR A 374 SER A 392 1 19 HELIX 19 AC1 SER A 403 THR A 424 1 22 HELIX 20 AC2 SER A 434 ASP A 453 1 20 HELIX 21 AC3 SER A 465 TYR A 478 1 14 HELIX 22 AC4 THR A 486 SER A 505 1 20 HELIX 23 AC5 SER A 525 ASP A 542 1 18 SHEET 1 AA1 2 SER A 44 ILE A 47 0 SHEET 2 AA1 2 GLN A 50 TRP A 53 -1 O THR A 52 N LYS A 45 CISPEP 1 PHE A 257 PRO A 258 0 4.69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 3636 PRO A 544 MASTER 718 0 0 23 2 0 0 6 3635 1 0 76 END